Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062408.t1 | KEH33752.1 | 38.5 | 213 | 97 | 5 | 57 | 235 | 241 | 453 | 3.80E-18 | 102.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062408.t1 | A0A072UVW7 | 38.5 | 213 | 97 | 5 | 57 | 235 | 241 | 453 | 2.8e-18 | 102.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049435 | MS.gene062408 | 0.805207 | 1.49E-49 | -1.69E-46 |
| MS.gene051388 | MS.gene062408 | 0.805564 | 1.26E-49 | -1.69E-46 |
| MS.gene052611 | MS.gene062408 | 0.805801 | 1.12E-49 | -1.69E-46 |
| MS.gene052612 | MS.gene062408 | 0.800635 | 1.31E-48 | -1.69E-46 |
| MS.gene054236 | MS.gene062408 | 0.826191 | 3.11E-54 | -1.69E-46 |
| MS.gene054467 | MS.gene062408 | 0.809683 | 1.68E-50 | -1.69E-46 |
| MS.gene054468 | MS.gene062408 | 0.80203 | 6.81E-49 | -1.69E-46 |
| MS.gene055357 | MS.gene062408 | 0.823139 | 1.63E-53 | -1.69E-46 |
| MS.gene055818 | MS.gene062408 | 0.80314 | 4.02E-49 | -1.69E-46 |
| MS.gene056050 | MS.gene062408 | 0.806075 | 9.81E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062408.t1 | MTR_3g452170 | 35.135 | 259 | 127 | 7 | 16 | 235 | 197 | 453 | 5.21e-26 | 105 |
| MS.gene062408.t1 | MTR_7g110100 | 50.495 | 101 | 43 | 2 | 23 | 118 | 204 | 302 | 7.50e-20 | 88.2 |
| MS.gene062408.t1 | MTR_1g105785 | 65.574 | 61 | 21 | 0 | 58 | 118 | 242 | 302 | 1.22e-18 | 84.7 |
| MS.gene062408.t1 | MTR_7g051400 | 63.934 | 61 | 22 | 0 | 58 | 118 | 220 | 280 | 6.41e-18 | 82.8 |
| MS.gene062408.t1 | MTR_3g046650 | 51.667 | 60 | 29 | 0 | 59 | 118 | 78 | 137 | 1.05e-12 | 65.9 |
| MS.gene062408.t1 | MTR_8g064300 | 51.429 | 70 | 34 | 0 | 164 | 233 | 240 | 309 | 1.45e-11 | 63.5 |
| MS.gene062408.t1 | MTR_5g093790 | 52.174 | 69 | 33 | 0 | 165 | 233 | 315 | 383 | 2.49e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 61 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATCTTCGACCTCCTTTA+TGG | 0.158996 | 7.3:-74764288 | None:intergenic |
| AGCTTCTTCTTCGTCGCTTT+TGG | 0.185005 | 7.3:+74762869 | MS.gene062408:CDS |
| GCAAGAACCAACGTTATTTC+TGG | 0.219123 | 7.3:+74763373 | MS.gene062408:CDS |
| TGTGGTGACTCCACCAAGTC+TGG | 0.319329 | 7.3:+74764188 | MS.gene062408:CDS |
| TTTATCAGTGCGGCAGCAAT+AGG | 0.374847 | 7.3:+74763039 | MS.gene062408:CDS |
| GTCTTCAATGGTCATCCATT+TGG | 0.395333 | 7.3:-74763150 | None:intergenic |
| AAAGGGAGTGCTTTCGCACT+TGG | 0.408825 | 7.3:+74762683 | MS.gene062408:CDS |
| ACTTGGACTTCATGCTGTTA+AGG | 0.408894 | 7.3:+74762700 | MS.gene062408:CDS |
| TAGTGTGGGGTCTGCCATAA+AGG | 0.411905 | 7.3:+74764274 | MS.gene062408:CDS |
| ATAATCAGTGCAAGATTTGA+TGG | 0.422356 | 7.3:+74763606 | MS.gene062408:intron |
| TGCGGCAGCAATAGGATTGA+TGG | 0.424355 | 7.3:+74763047 | MS.gene062408:CDS |
| GCAGCAAAGTTGTTGGTAAG+AGG | 0.445485 | 7.3:+74764243 | MS.gene062408:CDS |
| CAACAGTGCTTGCGGAAACC+TGG | 0.449018 | 7.3:-74763100 | None:intergenic |
| TAACGGTTCACCTCAGTCAA+TGG | 0.451911 | 7.3:-74764051 | None:intergenic |
| TTTGTAGGTGGCGGCATTGA+CGG | 0.454558 | 7.3:+74762903 | MS.gene062408:CDS |
| TTTGAACATGAGGTTGAGAA+AGG | 0.469351 | 7.3:+74762665 | MS.gene062408:CDS |
| ATCTTTCAACCCAGACTTGG+TGG | 0.472696 | 7.3:-74764198 | None:intergenic |
| AGGATATGCTACAGACCAAA+TGG | 0.486210 | 7.3:+74763135 | MS.gene062408:CDS |
| AAGAGGGCTGCTGATAGTGT+GGG | 0.487131 | 7.3:+74764260 | MS.gene062408:CDS |
| ACACCGTGCAGCAAAGTTGT+TGG | 0.490521 | 7.3:+74764236 | MS.gene062408:CDS |
| TGTTACACAAGGTGTTAGCC+AGG | 0.492193 | 7.3:+74763082 | MS.gene062408:CDS |
| ACAAATTCTGTTTGAACATG+AGG | 0.495179 | 7.3:+74762655 | MS.gene062408:CDS |
| AGAAATAACGTTGGTTCTTG+CGG | 0.495906 | 7.3:-74763371 | None:intergenic |
| GAGGAAAATGATTAGCTTGG+AGG | 0.509404 | 7.3:+74764009 | MS.gene062408:intron |
| CAGGAAAGGGTTATTGAGTG+TGG | 0.511387 | 7.3:+74764170 | MS.gene062408:intron |
| TAAGAGGGCTGCTGATAGTG+TGG | 0.513325 | 7.3:+74764259 | MS.gene062408:CDS |
| TGCCTTGGTTGCTACCATGA+TGG | 0.515525 | 7.3:+74764367 | MS.gene062408:CDS |
| TAGTGTTAGTAAGCATTTGT+GGG | 0.516009 | 7.3:+74763315 | MS.gene062408:CDS |
| GAAGTGTGTCAAACTTGAAA+AGG | 0.522461 | 7.3:+74764343 | MS.gene062408:CDS |
| GCCGCCACCTACAAAACCAT+TGG | 0.526590 | 7.3:-74762895 | None:intergenic |
| TGTATCTTTCAACCCAGACT+TGG | 0.529928 | 7.3:-74764201 | None:intergenic |
| GTGGGATCAAGCATGAGTAT+AGG | 0.530491 | 7.3:+74763333 | MS.gene062408:CDS |
| CAGCAAAGTTGTTGGTAAGA+GGG | 0.538148 | 7.3:+74764244 | MS.gene062408:CDS |
| TGATTCAATCAAGTCTTCAA+TGG | 0.540088 | 7.3:-74763162 | None:intergenic |
| ATAGTGTTAGTAAGCATTTG+TGG | 0.541520 | 7.3:+74763314 | MS.gene062408:CDS |
| TGTGTTTGTTGAATGATCCA+AGG | 0.543597 | 7.3:+74762350 | None:intergenic |
| GTGGAAGGTGTAACCAGTGT+AGG | 0.546738 | 7.3:+74763407 | MS.gene062408:CDS |
| CAAACTTGAAAAGGATGCCT+TGG | 0.548971 | 7.3:+74764352 | MS.gene062408:CDS |
| GTTGGTTCTTGCGGCACACA+TGG | 0.556424 | 7.3:-74763362 | None:intergenic |
| TGGGGACTGCATTCCTACAC+TGG | 0.559021 | 7.3:-74763420 | None:intergenic |
| TGTAGCATATCCTCTGGTAA+AGG | 0.560978 | 7.3:-74763125 | None:intergenic |
| TTGGTCTGTAGCATATCCTC+TGG | 0.565831 | 7.3:-74763131 | None:intergenic |
| GCAAGATTTGATGGATGTGC+AGG | 0.571300 | 7.3:+74763615 | MS.gene062408:CDS |
| GTGGTGACTCCACCAAGTCT+GGG | 0.571676 | 7.3:+74764189 | MS.gene062408:CDS |
| TAAAAGCTATAAATCCATCA+TGG | 0.583271 | 7.3:-74764381 | None:intergenic |
| TTGAACATGAGGTTGAGAAA+GGG | 0.585782 | 7.3:+74762666 | MS.gene062408:CDS |
| TTACCAACAACTTTGCTGCA+CGG | 0.589838 | 7.3:-74764239 | None:intergenic |
| CACTGTTGTACCTTTACCAG+AGG | 0.597569 | 7.3:+74763115 | MS.gene062408:CDS |
| GAACCAACGTTATTTCTGGA+AGG | 0.597740 | 7.3:+74763377 | MS.gene062408:CDS |
| ATAAAGGAGGTCGAAGATGT+TGG | 0.601348 | 7.3:+74764290 | MS.gene062408:CDS |
| ATCCATCATGGTAGCAACCA+AGG | 0.604137 | 7.3:-74764369 | None:intergenic |
| AGTGTAGGAATGCAGTCCCC+AGG | 0.607215 | 7.3:+74763422 | MS.gene062408:CDS |
| TAAAGGTACAACAGTGCTTG+CGG | 0.616448 | 7.3:-74763108 | None:intergenic |
| AGAGGGCTGCTGATAGTGTG+GGG | 0.621274 | 7.3:+74764261 | MS.gene062408:CDS |
| TAGGATTGATGGAGCAGATG+TGG | 0.634420 | 7.3:+74763058 | MS.gene062408:CDS |
| CATCCTTCCAGAAATAACGT+TGG | 0.640371 | 7.3:-74763380 | None:intergenic |
| TGTGGGGTCTGCCATAAAGG+AGG | 0.670373 | 7.3:+74764277 | MS.gene062408:CDS |
| TGATGCTGAGCCATTGACTG+AGG | 0.690205 | 7.3:+74764041 | MS.gene062408:CDS |
| TAGCGTTTAGTTTATCAGTG+CGG | 0.699980 | 7.3:+74763029 | MS.gene062408:intron |
| GCAGATGTGGTTGTTACACA+AGG | 0.718123 | 7.3:+74763071 | MS.gene062408:CDS |
| TGGGTTGAAAGATACAGTTG+AGG | 0.753945 | 7.3:+74764208 | MS.gene062408:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAATGAAAAAAAATTTAA+CGG | - | chr7.3:74763258-74763277 | None:intergenic | 10.0% |
| !! | TAGAAAAATTTAATGTAAAT+TGG | + | chr7.3:74764086-74764105 | MS.gene062408:intron | 10.0% |
| !! | AGAATGAAAAAAAATTTAAC+GGG | - | chr7.3:74763257-74763276 | None:intergenic | 15.0% |
| !! | TAATAGTATATATACATATC+AGG | + | chr7.3:74763500-74763519 | MS.gene062408:intron | 15.0% |
| !!! | AAGTATATAATGGAATTTTT+TGG | + | chr7.3:74762926-74762945 | MS.gene062408:intron | 15.0% |
| !! | ATAAAATTATCAAGTTCAGA+TGG | - | chr7.3:74763748-74763767 | None:intergenic | 20.0% |
| !! | GACTCATATTCATATATTAA+AGG | - | chr7.3:74762633-74762652 | None:intergenic | 20.0% |
| !! | GATAATTAGAAATTTCAAGA+AGG | - | chr7.3:74763925-74763944 | None:intergenic | 20.0% |
| !!! | ACATTAAATTTTTCTAGAAC+AGG | - | chr7.3:74764082-74764101 | None:intergenic | 20.0% |
| !!! | ATTTTATGAATTTTCTCTCA+AGG | + | chr7.3:74762768-74762787 | MS.gene062408:intron | 20.0% |
| !!! | TATATAATGGAATTTTTTGG+TGG | + | chr7.3:74762929-74762948 | MS.gene062408:intron | 20.0% |
| !!! | TCTGAACTTGATAATTTTAT+TGG | + | chr7.3:74763748-74763767 | MS.gene062408:intron | 20.0% |
| !!! | TCTTAACAAAAAAAGTGTTA+GGG | - | chr7.3:74762381-74762400 | None:intergenic | 20.0% |
| !!! | TTCTTAACAAAAAAAGTGTT+AGG | - | chr7.3:74762382-74762401 | None:intergenic | 20.0% |
| ! | AATAAACAAATCTGACAATG+AGG | - | chr7.3:74762751-74762770 | None:intergenic | 25.0% |
| ! | ATAAACAAATCTGACAATGA+GGG | - | chr7.3:74762750-74762769 | None:intergenic | 25.0% |
| ! | GCATAATTTCATTTACTTGT+TGG | - | chr7.3:74764118-74764137 | None:intergenic | 25.0% |
| ! | GTTGTTAAAGGTTGAAATTA+CGG | + | chr7.3:74763780-74763799 | MS.gene062408:intron | 25.0% |
| ! | TATATCATCCAATCTGTTTA+TGG | + | chr7.3:74763212-74763231 | MS.gene062408:intron | 25.0% |
| ! | TGGTAAGAAAATGTTGTTAA+AGG | + | chr7.3:74763768-74763787 | MS.gene062408:intron | 25.0% |
| !! | AATTTCATTTACTTGTTGGA+AGG | - | chr7.3:74764114-74764133 | None:intergenic | 25.0% |
| !! | ATTGCTATTATAGATAGAAG+TGG | + | chr7.3:74762458-74762477 | MS.gene062408:intron | 25.0% |
| !!! | TGCTTTTGCTTTATTTGTTT+AGG | + | chr7.3:74763969-74763988 | MS.gene062408:intron | 25.0% |
| !!! | TTTGTTTTGATGCTATTTAC+AGG | + | chr7.3:74764151-74764170 | MS.gene062408:intron | 25.0% |
| !!! | TTTTTGTTATAGCAATGTCA+TGG | + | chr7.3:74763290-74763309 | MS.gene062408:intron | 25.0% |
| AAGAATGATTCCGATTATGT+CGG | + | chr7.3:74763583-74763602 | MS.gene062408:intron | 30.0% | |
| AATTGTTTGCATAACAAGCA+CGG | + | chr7.3:74763712-74763731 | MS.gene062408:intron | 30.0% | |
| ACAAATTCTGTTTGAACATG+AGG | + | chr7.3:74762655-74762674 | MS.gene062408:CDS | 30.0% | |
| ATAATCAGTGCAAGATTTGA+TGG | + | chr7.3:74763606-74763625 | MS.gene062408:intron | 30.0% | |
| ATAGTGTTAGTAAGCATTTG+TGG | + | chr7.3:74763314-74763333 | MS.gene062408:CDS | 30.0% | |
| GATGTTCTACATCAGTATTA+GGG | - | chr7.3:74762411-74762430 | None:intergenic | 30.0% | |
| TAATCGCAACTACAAAATCA+GGG | + | chr7.3:74762504-74762523 | MS.gene062408:intron | 30.0% | |
| TAGTGTTAGTAAGCATTTGT+GGG | + | chr7.3:74763315-74763334 | MS.gene062408:CDS | 30.0% | |
| TGAAGAAACCATAAACAGAT+TGG | - | chr7.3:74763223-74763242 | None:intergenic | 30.0% | |
| TGATCTGCATTGAATTTCTA+TGG | + | chr7.3:74763672-74763691 | MS.gene062408:intron | 30.0% | |
| TGATGTAGAACATCAACTAT+TGG | + | chr7.3:74762417-74762436 | MS.gene062408:intron | 30.0% | |
| TGATGTTCTACATCAGTATT+AGG | - | chr7.3:74762412-74762431 | None:intergenic | 30.0% | |
| TGATTCAATCAAGTCTTCAA+TGG | - | chr7.3:74763165-74763184 | None:intergenic | 30.0% | |
| TTAAAGGTTGAAATTACGGA+CGG | + | chr7.3:74763784-74763803 | MS.gene062408:intron | 30.0% | |
| ! | CTTGTTATGCAAACAATTAG+AGG | - | chr7.3:74763710-74763729 | None:intergenic | 30.0% |
| ! | TTGATGCTATTTACAGGAAA+GGG | + | chr7.3:74764157-74764176 | MS.gene062408:intron | 30.0% |
| ! | TTTGATGCTATTTACAGGAA+AGG | + | chr7.3:74764156-74764175 | MS.gene062408:intron | 30.0% |
| !! | ATTTTGATATCACATACCTG+GGG | - | chr7.3:74763441-74763460 | None:intergenic | 30.0% |
| !! | CATCTTTGCATGTTTTGTTA+TGG | - | chr7.3:74764324-74764343 | None:intergenic | 30.0% |
| !! | GATTTTGATATCACATACCT+GGG | - | chr7.3:74763442-74763461 | None:intergenic | 30.0% |
| !! | TTCTAGAACAGGTTTCTTAA+CGG | - | chr7.3:74764071-74764090 | None:intergenic | 30.0% |
| ACAATGAGGGAATAGAGAAA+AGG | - | chr7.3:74762737-74762756 | None:intergenic | 35.0% | |
| CTTGTCAAACAAAATGAAGC+TGG | - | chr7.3:74763566-74763585 | None:intergenic | 35.0% | |
| GAAGTGTGTCAAACTTGAAA+AGG | + | chr7.3:74764343-74764362 | MS.gene062408:CDS | 35.0% | |
| GAATTTCTATGGCTTACTCA+TGG | + | chr7.3:74763683-74763702 | MS.gene062408:intron | 35.0% | |
| GCTATTATAGATAGAAGTGG+TGG | + | chr7.3:74762461-74762480 | MS.gene062408:intron | 35.0% | |
| GTAATCGCAACTACAAAATC+AGG | + | chr7.3:74762503-74762522 | MS.gene062408:intron | 35.0% | |
| TTAAAGGAAAGAAAGCCAAG+TGG | - | chr7.3:74762617-74762636 | None:intergenic | 35.0% | |
| TTGAACATGAGGTTGAGAAA+GGG | + | chr7.3:74762666-74762685 | MS.gene062408:CDS | 35.0% | |
| TTTGAACATGAGGTTGAGAA+AGG | + | chr7.3:74762665-74762684 | MS.gene062408:CDS | 35.0% | |
| ! | CACTGATTATCCGACATAAT+CGG | - | chr7.3:74763596-74763615 | None:intergenic | 35.0% |
| ! | GCATTGACGGAAGTATATAA+TGG | + | chr7.3:74762916-74762935 | MS.gene062408:intron | 35.0% |
| ! | GTTGAGGAAAATGATTAGCT+TGG | + | chr7.3:74764006-74764025 | MS.gene062408:intron | 35.0% |
| ! | TAGCGTTTAGTTTATCAGTG+CGG | + | chr7.3:74763029-74763048 | MS.gene062408:intron | 35.0% |
| ! | TTTTTCTCTCAACATCCACT+TGG | + | chr7.3:74762599-74762618 | MS.gene062408:intron | 35.0% |
| !! | ACGGAAATTTGTTGCATAGT+TGG | + | chr7.3:74763803-74763822 | MS.gene062408:intron | 35.0% |
| !! | AGAAATAACGTTGGTTCTTG+CGG | - | chr7.3:74763374-74763393 | None:intergenic | 35.0% |
| !! | ATCTTGATGATGCTTGTGAA+GGG | - | chr7.3:74762540-74762559 | None:intergenic | 35.0% |
| !! | ATTTCTGGAAGGATGTTTTG+TGG | + | chr7.3:74763388-74763407 | MS.gene062408:CDS | 35.0% |
| !! | CGATTTTGATATCACATACC+TGG | - | chr7.3:74763443-74763462 | None:intergenic | 35.0% |
| !!! | TTGGATTCCAATGGTTTTGT+AGG | + | chr7.3:74762888-74762907 | MS.gene062408:CDS | 35.0% |
| AACATCTTCGACCTCCTTTA+TGG | - | chr7.3:74764291-74764310 | None:intergenic | 40.0% | |
| AAGAATAGCTCTTGACAGCA+AGG | + | chr7.3:74762566-74762585 | MS.gene062408:intron | 40.0% | |
| ACTTGGACTTCATGCTGTTA+AGG | + | chr7.3:74762700-74762719 | MS.gene062408:CDS | 40.0% | |
| AGAACATCAACTATTGGCGT+TGG | + | chr7.3:74762423-74762442 | MS.gene062408:intron | 40.0% | |
| AGGATATGCTACAGACCAAA+TGG | + | chr7.3:74763135-74763154 | MS.gene062408:CDS | 40.0% | |
| ATAAAGGAGGTCGAAGATGT+TGG | + | chr7.3:74764290-74764309 | MS.gene062408:CDS | 40.0% | |
| ATGAGGGAATAGAGAAAAGG+TGG | - | chr7.3:74762734-74762753 | None:intergenic | 40.0% | |
| CAAACTTGAAAAGGATGCCT+TGG | + | chr7.3:74764352-74764371 | MS.gene062408:CDS | 40.0% | |
| CATCCTTCCAGAAATAACGT+TGG | - | chr7.3:74763383-74763402 | None:intergenic | 40.0% | |
| GGTTTCTAACGATGAAGTTG+AGG | + | chr7.3:74763990-74764009 | MS.gene062408:intron | 40.0% | |
| GTCAAACAAAATGAAGCTGG+TGG | - | chr7.3:74763563-74763582 | None:intergenic | 40.0% | |
| GTCTTCAATGGTCATCCATT+TGG | - | chr7.3:74763153-74763172 | None:intergenic | 40.0% | |
| TGTAGCATATCCTCTGGTAA+AGG | - | chr7.3:74763128-74763147 | None:intergenic | 40.0% | |
| TGTATCTTTCAACCCAGACT+TGG | - | chr7.3:74764204-74764223 | None:intergenic | 40.0% | |
| TTACCAACAACTTTGCTGCA+CGG | - | chr7.3:74764242-74764261 | None:intergenic | 40.0% | |
| ! | ATAGATAGAAGTGGTGGTGA+AGG | + | chr7.3:74762467-74762486 | MS.gene062408:intron | 40.0% |
| ! | CAAGCTTCATGTTCAGGTTA+TGG | + | chr7.3:74763525-74763544 | MS.gene062408:intron | 40.0% |
| ! | CAGCAAAGTTGTTGGTAAGA+GGG | + | chr7.3:74764244-74764263 | MS.gene062408:CDS | 40.0% |
| ! | GCAAGAACCAACGTTATTTC+TGG | + | chr7.3:74763373-74763392 | MS.gene062408:CDS | 40.0% |
| ! | TAAAGGTACAACAGTGCTTG+CGG | - | chr7.3:74763111-74763130 | None:intergenic | 40.0% |
| ! | TAGATAGAAGTGGTGGTGAA+GGG | + | chr7.3:74762468-74762487 | MS.gene062408:intron | 40.0% |
| ! | TGGGTTGAAAGATACAGTTG+AGG | + | chr7.3:74764208-74764227 | MS.gene062408:CDS | 40.0% |
| !! | CATCTTGATGATGCTTGTGA+AGG | - | chr7.3:74762541-74762560 | None:intergenic | 40.0% |
| !! | GAACCAACGTTATTTCTGGA+AGG | + | chr7.3:74763377-74763396 | MS.gene062408:CDS | 40.0% |
| !! | GAGGAAAATGATTAGCTTGG+AGG | + | chr7.3:74764009-74764028 | MS.gene062408:intron | 40.0% |
| !!! | GATTCCAATGGTTTTGTAGG+TGG | + | chr7.3:74762891-74762910 | MS.gene062408:CDS | 40.0% |
| ATCCATCATGGTAGCAACCA+AGG | - | chr7.3:74764372-74764391 | None:intergenic | 45.0% | |
| ATCTTTCAACCCAGACTTGG+TGG | - | chr7.3:74764201-74764220 | None:intergenic | 45.0% | |
| CACTGTTGTACCTTTACCAG+AGG | + | chr7.3:74763115-74763134 | MS.gene062408:CDS | 45.0% | |
| CAGGAAAGGGTTATTGAGTG+TGG | + | chr7.3:74764170-74764189 | MS.gene062408:intron | 45.0% | |
| CAGGTTCAAGCTTCATGTTC+AGG | + | chr7.3:74763519-74763538 | MS.gene062408:intron | 45.0% | |
| GCAGATGTGGTTGTTACACA+AGG | + | chr7.3:74763071-74763090 | MS.gene062408:CDS | 45.0% | |
| GTGGGATCAAGCATGAGTAT+AGG | + | chr7.3:74763333-74763352 | MS.gene062408:CDS | 45.0% | |
| GTTTGCATAACAAGCACGGT+GGG | + | chr7.3:74763716-74763735 | MS.gene062408:intron | 45.0% | |
| TAACGGTTCACCTCAGTCAA+TGG | - | chr7.3:74764054-74764073 | None:intergenic | 45.0% | |
| TAGGATTGATGGAGCAGATG+TGG | + | chr7.3:74763058-74763077 | MS.gene062408:CDS | 45.0% | |
| TGTTTGCATAACAAGCACGG+TGG | + | chr7.3:74763715-74763734 | MS.gene062408:intron | 45.0% | |
| TTGGTCTGTAGCATATCCTC+TGG | - | chr7.3:74763134-74763153 | None:intergenic | 45.0% | |
| TTTATCAGTGCGGCAGCAAT+AGG | + | chr7.3:74763039-74763058 | MS.gene062408:CDS | 45.0% | |
| TTTGCATAACAAGCACGGTG+GGG | + | chr7.3:74763717-74763736 | MS.gene062408:intron | 45.0% | |
| ! | AAAGTGTTAGGGTCGAACCT+TGG | - | chr7.3:74762370-74762389 | None:intergenic | 45.0% |
| ! | CTGGAAGGATGTTTTGTGGA+AGG | + | chr7.3:74763392-74763411 | MS.gene062408:CDS | 45.0% |
| ! | GCAAGATTTGATGGATGTGC+AGG | + | chr7.3:74763615-74763634 | MS.gene062408:CDS | 45.0% |
| ! | GCAGCAAAGTTGTTGGTAAG+AGG | + | chr7.3:74764243-74764262 | MS.gene062408:CDS | 45.0% |
| ! | TCAACTATTGGCGTTGGAGA+AGG | + | chr7.3:74762429-74762448 | MS.gene062408:intron | 45.0% |
| ! | TGTTACACAAGGTGTTAGCC+AGG | + | chr7.3:74763082-74763101 | MS.gene062408:CDS | 45.0% |
| !! | AGCTTCTTCTTCGTCGCTTT+TGG | + | chr7.3:74762869-74762888 | MS.gene062408:CDS | 45.0% |
| !! | TTGATGATGCTTGTGAAGGG+AGG | - | chr7.3:74762537-74762556 | None:intergenic | 45.0% |
| !! | TTTTTGGTGGTCGCTGGTTA+AGG | + | chr7.3:74762942-74762961 | MS.gene062408:intron | 45.0% |
| !!! | TCCAATGGTTTTGTAGGTGG+CGG | + | chr7.3:74762894-74762913 | MS.gene062408:CDS | 45.0% |
| !!! | TCGTCGCTTTTGGATTCCAA+TGG | + | chr7.3:74762879-74762898 | MS.gene062408:CDS | 45.0% |
| !!! | TGGAATTTTTTGGTGGTCGC+TGG | + | chr7.3:74762936-74762955 | MS.gene062408:intron | 45.0% |
| ACACCGTGCAGCAAAGTTGT+TGG | + | chr7.3:74764236-74764255 | MS.gene062408:CDS | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr7.3:74762825-74762844 | None:intergenic | 50.0% | |
| TAGTGTGGGGTCTGCCATAA+AGG | + | chr7.3:74764274-74764293 | MS.gene062408:CDS | 50.0% | |
| TGCCTTGGTTGCTACCATGA+TGG | + | chr7.3:74764367-74764386 | MS.gene062408:CDS | 50.0% | |
| TGCGGCAGCAATAGGATTGA+TGG | + | chr7.3:74763047-74763066 | MS.gene062408:CDS | 50.0% | |
| ! | AAGAGGGCTGCTGATAGTGT+GGG | + | chr7.3:74764260-74764279 | MS.gene062408:CDS | 50.0% |
| ! | CAAAATGAAGCTGGTGGACC+CGG | - | chr7.3:74763557-74763576 | None:intergenic | 50.0% |
| ! | GTGGAAGGTGTAACCAGTGT+AGG | + | chr7.3:74763407-74763426 | MS.gene062408:CDS | 50.0% |
| ! | GTTCAGGTTATGGACAGCAC+CGG | + | chr7.3:74763535-74763554 | MS.gene062408:intron | 50.0% |
| ! | TAAGAGGGCTGCTGATAGTG+TGG | + | chr7.3:74764259-74764278 | MS.gene062408:CDS | 50.0% |
| ! | TGATGCTGAGCCATTGACTG+AGG | + | chr7.3:74764041-74764060 | MS.gene062408:CDS | 50.0% |
| ! | TTCAGGTTATGGACAGCACC+GGG | + | chr7.3:74763536-74763555 | MS.gene062408:intron | 50.0% |
| ! | TTTGTAGGTGGCGGCATTGA+CGG | + | chr7.3:74762903-74762922 | MS.gene062408:CDS | 50.0% |
| !! | AAAGGGAGTGCTTTCGCACT+TGG | + | chr7.3:74762683-74762702 | MS.gene062408:CDS | 50.0% |
| AGTGTAGGAATGCAGTCCCC+AGG | + | chr7.3:74763422-74763441 | MS.gene062408:CDS | 55.0% | |
| CAACAGTGCTTGCGGAAACC+TGG | - | chr7.3:74763103-74763122 | None:intergenic | 55.0% | |
| GCCGCCACCTACAAAACCAT+TGG | - | chr7.3:74762898-74762917 | None:intergenic | 55.0% | |
| GCTGGTTAAGGAGGTGGTGA+CGG | + | chr7.3:74762954-74762973 | MS.gene062408:intron | 55.0% | |
| GTGGTGACTCCACCAAGTCT+GGG | + | chr7.3:74764189-74764208 | MS.gene062408:CDS | 55.0% | |
| TGGGGACTGCATTCCTACAC+TGG | - | chr7.3:74763423-74763442 | None:intergenic | 55.0% | |
| TGTGGGGTCTGCCATAAAGG+AGG | + | chr7.3:74764277-74764296 | MS.gene062408:CDS | 55.0% | |
| TGTGGTGACTCCACCAAGTC+TGG | + | chr7.3:74764188-74764207 | MS.gene062408:CDS | 55.0% | |
| ! | AGAGGGCTGCTGATAGTGTG+GGG | + | chr7.3:74764261-74764280 | MS.gene062408:CDS | 55.0% |
| ! | GTGACGGTCTGTTCTGGATC+AGG | + | chr7.3:74762970-74762989 | MS.gene062408:intron | 55.0% |
| ! | GTTGGTTCTTGCGGCACACA+TGG | - | chr7.3:74763365-74763384 | None:intergenic | 55.0% |
| ! | TTGGTGGTCGCTGGTTAAGG+AGG | + | chr7.3:74762945-74762964 | MS.gene062408:intron | 55.0% |
| GCATAACAAGCACGGTGGGG+AGG | + | chr7.3:74763720-74763739 | MS.gene062408:intron | 60.0% | |
| ! | GTGGTCGCTGGTTAAGGAGG+TGG | + | chr7.3:74762948-74762967 | MS.gene062408:intron | 60.0% |
| !! | GAGGTGGTGACGGTCTGTTC+TGG | + | chr7.3:74762964-74762983 | MS.gene062408:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 74762362 | 74764397 | 74762362 | ID=MS.gene062408 |
| chr7.3 | mRNA | 74762362 | 74764397 | 74762362 | ID=MS.gene062408.t1;Parent=MS.gene062408 |
| chr7.3 | exon | 74762362 | 74762371 | 74762362 | ID=MS.gene062408.t1.exon1;Parent=MS.gene062408.t1 |
| chr7.3 | CDS | 74762362 | 74762371 | 74762362 | ID=cds.MS.gene062408.t1;Parent=MS.gene062408.t1 |
| chr7.3 | exon | 74762651 | 74762721 | 74762651 | ID=MS.gene062408.t1.exon2;Parent=MS.gene062408.t1 |
| chr7.3 | CDS | 74762651 | 74762721 | 74762651 | ID=cds.MS.gene062408.t1;Parent=MS.gene062408.t1 |
| chr7.3 | exon | 74762858 | 74762927 | 74762858 | ID=MS.gene062408.t1.exon3;Parent=MS.gene062408.t1 |
| chr7.3 | CDS | 74762858 | 74762927 | 74762858 | ID=cds.MS.gene062408.t1;Parent=MS.gene062408.t1 |
| chr7.3 | exon | 74763039 | 74763190 | 74763039 | ID=MS.gene062408.t1.exon4;Parent=MS.gene062408.t1 |
| chr7.3 | CDS | 74763039 | 74763190 | 74763039 | ID=cds.MS.gene062408.t1;Parent=MS.gene062408.t1 |
| chr7.3 | exon | 74763302 | 74763443 | 74763302 | ID=MS.gene062408.t1.exon5;Parent=MS.gene062408.t1 |
| chr7.3 | CDS | 74763302 | 74763443 | 74763302 | ID=cds.MS.gene062408.t1;Parent=MS.gene062408.t1 |
| chr7.3 | exon | 74763614 | 74763636 | 74763614 | ID=MS.gene062408.t1.exon6;Parent=MS.gene062408.t1 |
| chr7.3 | CDS | 74763614 | 74763636 | 74763614 | ID=cds.MS.gene062408.t1;Parent=MS.gene062408.t1 |
| chr7.3 | exon | 74764024 | 74764062 | 74764024 | ID=MS.gene062408.t1.exon7;Parent=MS.gene062408.t1 |
| chr7.3 | CDS | 74764024 | 74764062 | 74764024 | ID=cds.MS.gene062408.t1;Parent=MS.gene062408.t1 |
| chr7.3 | exon | 74764173 | 74764397 | 74764173 | ID=MS.gene062408.t1.exon8;Parent=MS.gene062408.t1 |
| chr7.3 | CDS | 74764173 | 74764397 | 74764173 | ID=cds.MS.gene062408.t1;Parent=MS.gene062408.t1 |
| Gene Sequence |
| Protein sequence |
