AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062454


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062454.t1 MTR_7g024390 98.765 648 8 0 1 648 1 648 0.0 1318
MS.gene062454.t1 MTR_7g099680 93.837 649 39 1 1 648 1 649 0.0 1256
MS.gene062454.t1 MTR_7g024580 92.638 652 41 3 1 648 1 649 0.0 1238
MS.gene062454.t1 MTR_4g063710 92.000 650 49 2 1 648 1 649 0.0 1221
MS.gene062454.t1 MTR_4g063720 91.859 651 48 2 1 648 1 649 0.0 1220
MS.gene062454.t1 MTR_4g130540 86.391 654 82 2 1 648 1 653 0.0 1149
MS.gene062454.t1 MTR_6g033850 67.642 615 198 1 1 615 1 614 0.0 855
MS.gene062454.t1 MTR_7g025760 66.023 621 207 3 1 619 1 619 0.0 838
MS.gene062454.t1 MTR_6g033760 66.721 616 204 1 1 616 1 615 0.0 837
MS.gene062454.t1 MTR_7g026030 65.862 621 207 4 1 619 1 618 0.0 833
MS.gene062454.t1 MTR_2g017730 67.107 605 179 3 9 607 8 598 0.0 826
MS.gene062454.t1 MTR_7g021440 65.528 615 208 3 1 613 1 613 0.0 823
MS.gene062454.t1 MTR_5g066800 64.490 628 208 4 1 615 1 626 0.0 822
MS.gene062454.t1 MTR_2g038260 66.559 619 200 6 1 615 1 616 0.0 822
MS.gene062454.t1 MTR_2g032550 66.069 613 204 3 6 615 7 618 0.0 817
MS.gene062454.t1 MTR_8g032650 65.862 621 207 4 1 619 1 618 0.0 815
MS.gene062454.t1 MTR_7g025820 66.667 597 195 3 1 595 1 595 0.0 811
MS.gene062454.t1 MTR_7g025720 64.734 621 214 4 1 619 1 618 0.0 809
MS.gene062454.t1 MTR_7g451380 64.563 618 215 3 1 615 1 617 0.0 808
MS.gene062454.t1 MTR_7g026110 63.695 617 218 5 1 615 1 613 0.0 804
MS.gene062454.t1 MTR_7g025790 64.563 618 214 4 1 616 1 615 0.0 801
MS.gene062454.t1 MTR_8g099795 65.472 614 206 4 7 618 36 645 0.0 801
MS.gene062454.t1 MTR_8g099945 65.309 614 207 4 7 618 36 645 0.0 801
MS.gene062454.t1 MTR_7g025620 64.918 610 209 4 1 608 1 607 0.0 797
MS.gene062454.t1 MTR_7g024030 64.812 611 210 4 1 609 1 608 0.0 797
MS.gene062454.t1 MTR_7g025630 64.251 621 203 6 1 619 1 604 0.0 791
MS.gene062454.t1 MTR_7g026090 64.390 615 213 3 1 613 1 611 0.0 788
MS.gene062454.t1 MTR_7g078190 64.000 625 216 7 1 619 1 622 0.0 787
MS.gene062454.t1 MTR_7g029415 64.332 614 211 7 6 615 13 622 0.0 786
MS.gene062454.t1 MTR_6g033870 63.242 623 222 3 5 621 6 627 0.0 784
MS.gene062454.t1 MTR_2g022050 65.049 618 212 3 1 615 1 617 0.0 783
MS.gene062454.t1 MTR_4g079590 63.502 611 218 4 1 608 1 609 0.0 783
MS.gene062454.t1 MTR_7g025740 63.328 619 213 6 1 608 1 616 0.0 782
MS.gene062454.t1 MTR_7g025770 62.783 618 225 4 1 615 1 616 0.0 779
MS.gene062454.t1 MTR_8g103930 62.141 626 206 6 4 616 6 613 0.0 778
MS.gene062454.t1 MTR_7g011590 64.019 617 205 5 1 615 1 602 0.0 776
MS.gene062454.t1 MTR_6g033955 62.300 626 230 2 1 621 1 625 0.0 776
MS.gene062454.t1 MTR_2g437440 63.107 618 206 4 1 615 1 599 0.0 776
MS.gene062454.t1 MTR_7g078210 63.782 624 218 6 1 619 1 621 0.0 775
MS.gene062454.t1 MTR_7g026170 63.328 619 220 6 1 615 1 616 0.0 775
MS.gene062454.t1 MTR_6g033820 61.199 634 240 2 1 629 1 633 0.0 771
MS.gene062454.t1 MTR_2g038270 61.146 628 228 7 1 615 1 625 0.0 763
MS.gene062454.t1 MTR_7g074460 62.783 618 208 4 1 616 1 598 0.0 750
MS.gene062454.t1 MTR_7g026130 63.124 621 217 7 1 613 1 617 0.0 749
MS.gene062454.t1 MTR_2g032580 62.197 619 197 6 1 615 1 586 0.0 743
MS.gene062454.t1 MTR_4g027145 59.905 631 234 8 1 615 1 628 0.0 736
MS.gene062454.t1 MTR_7g026140 60.420 619 220 8 1 614 1 599 0.0 733
MS.gene062454.t1 MTR_7g025260 62.478 573 211 3 49 619 21 591 0.0 723
MS.gene062454.t1 MTR_1g017130 59.411 611 203 7 1 608 1 569 0.0 717
MS.gene062454.t1 MTR_7g451360 58.937 621 190 7 1 617 1 560 0.0 701
MS.gene062454.t1 MTR_6g033800 65.209 526 180 2 90 615 1 523 0.0 697
MS.gene062454.t1 MTR_2g040260 83.000 400 66 1 1 400 1030 1427 0.0 689
MS.gene062454.t1 MTR_2g040370 87.047 386 48 1 4 389 1024 1407 0.0 689
MS.gene062454.t1 MTR_2g040370 85.195 385 54 2 4 387 1408 1790 0.0 652
MS.gene062454.t1 MTR_2g040370 87.047 386 48 1 4 389 1024 1407 0.0 689
MS.gene062454.t1 MTR_2g040370 85.233 386 54 2 4 388 1408 1791 0.0 654
MS.gene062454.t1 MTR_2g040160 82.500 400 68 1 1 400 1101 1498 0.0 677
MS.gene062454.t1 MTR_7g007000 56.704 619 217 7 1 614 1 573 0.0 676
MS.gene062454.t1 MTR_7g035155 56.149 618 212 7 1 615 1 562 0.0 662
MS.gene062454.t1 MTR_4g063720 90.411 365 29 3 287 648 217 578 0.0 654
MS.gene062454.t1 MTR_4g063720 91.518 224 19 0 1 224 1 224 3.55e-143 429
MS.gene062454.t1 MTR_2g040220 73.128 454 104 4 1 436 1010 1463 0.0 651
MS.gene062454.t1 MTR_2g040220 56.872 211 34 4 446 648 1397 1558 1.76e-55 205
MS.gene062454.t1 MTR_2g040350 79.449 399 76 3 6 400 1035 1431 0.0 645
MS.gene062454.t1 MTR_1g041565 55.700 614 195 10 6 615 2 542 0.0 645
MS.gene062454.t1 MTR_2g040350 79.449 399 76 3 6 400 817 1213 0.0 644
MS.gene062454.t1 MTR_2g032160 73.333 375 98 1 1 373 1 375 0.0 582
MS.gene062454.t1 MTR_2g032160 42.424 99 56 1 519 616 365 463 2.66e-12 69.7
MS.gene062454.t1 MTR_2g010020 52.249 578 249 10 10 580 58 615 0.0 566
MS.gene062454.t1 MTR_2g010020 52.249 578 249 10 10 580 57 614 0.0 566
MS.gene062454.t1 MTR_4g092920 51.730 578 253 9 10 578 54 614 0.0 558
MS.gene062454.t1 MTR_2g005690 47.649 638 296 12 10 637 72 681 0.0 533
MS.gene062454.t1 MTR_6g034005 49.360 547 254 8 80 615 2 536 1.25e-166 493
MS.gene062454.t1 MTR_4g092920 51.710 497 215 8 90 578 1 480 2.43e-163 479
MS.gene062454.t1 MTR_1g077230 74.823 282 69 1 1 280 1 282 2.80e-152 441
MS.gene062454.t1 MTR_4g088515 55.814 430 102 7 9 436 276 619 9.62e-146 437
MS.gene062454.t1 MTR_6g033810 59.337 332 85 3 86 415 8 291 3.66e-126 375
MS.gene062454.t1 MTR_7g026050 51.872 374 151 3 243 615 1 346 1.35e-125 375
MS.gene062454.t1 MTR_7g026080 71.138 246 69 1 1 244 1 246 1.67e-122 364
MS.gene062454.t1 MTR_6g033855 52.493 381 93 5 86 464 8 302 4.19e-120 360
MS.gene062454.t1 MTR_2g040355 47.289 461 82 10 187 646 2 302 7.30e-110 333
MS.gene062454.t1 MTR_2g031670 69.778 225 66 1 21 243 43 267 2.49e-108 331
MS.gene062454.t1 MTR_2g031670 74.627 67 16 1 342 408 275 340 2.59e-21 96.3
MS.gene062454.t1 MTR_5g006180 35.388 503 284 11 9 494 29 507 9.02e-89 287
MS.gene062454.t1 MTR_1g077240 54.209 297 126 4 320 615 1 288 1.59e-87 275
MS.gene062454.t1 MTR_2g102180 34.932 438 269 4 10 434 4 438 2.75e-84 283
MS.gene062454.t1 MTR_4g012050 34.932 438 269 4 10 434 4 438 4.99e-83 279
MS.gene062454.t1 MTR_1207s0010 71.591 176 49 1 106 281 1 175 1.00e-81 256
MS.gene062454.t1 MTR_5g097190 54.545 253 66 4 4 254 153 358 1.32e-79 257
MS.gene062454.t1 MTR_6g478100 60.849 212 69 2 36 247 10 207 9.72e-79 253
MS.gene062454.t1 MTR_6g478100 40.000 95 56 1 515 608 208 302 4.17e-12 68.2
MS.gene062454.t1 MTR_5g092570 34.660 427 270 4 10 430 4 427 1.96e-76 260
MS.gene062454.t1 MTR_3g051300 33.333 420 275 4 10 428 4 419 1.13e-75 258
MS.gene062454.t1 MTR_5g090110 33.874 493 273 13 9 482 28 486 5.37e-74 247
MS.gene062454.t1 MTR_4g115780 34.774 509 306 10 9 496 140 643 7.73e-70 240
MS.gene062454.t1 MTR_5g005870 41.718 326 178 5 265 587 35 351 1.30e-68 229
MS.gene062454.t1 MTR_4g107920 32.143 504 307 14 10 496 21 506 1.20e-67 231
MS.gene062454.t1 MTR_3g081170 27.947 526 334 13 10 498 27 544 1.08e-57 209
MS.gene062454.t1 MTR_6g033910 47.186 231 59 4 72 300 19 188 2.36e-55 187
MS.gene062454.t1 MTR_7g074540 48.756 201 102 1 416 616 1 200 3.96e-54 184
MS.gene062454.t1 MTR_1g116250 44.000 275 111 5 342 615 56 288 4.23e-54 187
MS.gene062454.t1 MTR_7g026180 75.630 119 29 0 74 192 21 139 2.89e-53 186
MS.gene062454.t1 MTR_7g026180 35.023 217 108 4 401 615 144 329 1.45e-27 114
MS.gene062454.t1 MTR_2g017710 43.077 260 63 6 223 480 17 193 5.24e-48 170
MS.gene062454.t1 MTR_7g451390 48.634 183 92 2 436 617 10 191 1.49e-47 166
MS.gene062454.t1 MTR_5g005890 38.326 227 89 4 72 297 5 181 1.20e-42 152
MS.gene062454.t1 MTR_1g068900 51.316 152 66 4 426 573 23 170 4.14e-38 139
MS.gene062454.t1 MTR_6g033805 77.465 71 16 0 1 71 1 71 8.53e-33 121
MS.gene062454.t1 MTR_4g027235 73.333 75 18 1 1 73 1 75 5.46e-30 113
MS.gene062454.t1 MTR_4g027085 73.333 75 18 1 1 73 1 75 5.46e-30 113
MS.gene062454.t1 MTR_7g026190 57.447 94 31 2 286 379 9 93 8.06e-28 111
MS.gene062454.t1 MTR_7g026190 39.496 119 69 2 498 616 94 209 1.70e-15 76.3
MS.gene062454.t1 MTR_2g040375 76.667 60 14 0 398 457 51 110 6.09e-23 94.7
MS.gene062454.t1 MTR_4g115860 46.739 92 49 0 396 487 29 120 2.25e-22 93.2
MS.gene062454.t1 MTR_6g033815 54.930 71 32 0 524 594 1 71 4.05e-20 86.3
MS.gene062454.t1 MTR_7g021430 52.000 75 36 0 213 287 1 75 2.04e-18 84.3
MS.gene062454.t1 MTR_7g026095 45.652 92 50 0 482 573 256 347 5.52e-18 86.3
MS.gene062454.t1 MTR_7g026095 50.000 88 28 2 86 173 189 260 8.70e-17 82.8
MS.gene062454.t1 MTR_7g026160 37.500 120 49 4 296 389 72 191 2.69e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062454.t1 AT3G12580 93.088 651 41 3 1 648 1 650 0.0 1226
MS.gene062454.t1 AT5G02500 91.398 651 53 1 1 648 1 651 0.0 1225
MS.gene062454.t1 AT3G09440 91.680 649 53 1 1 648 1 649 0.0 1223
MS.gene062454.t1 AT3G09440 91.680 649 53 1 1 648 1 649 0.0 1223
MS.gene062454.t1 AT3G09440 91.680 649 53 1 1 648 1 649 0.0 1223
MS.gene062454.t1 AT3G09440 91.680 649 53 1 1 648 1 649 0.0 1223
MS.gene062454.t1 AT5G02490 89.740 653 62 2 1 648 1 653 0.0 1200
MS.gene062454.t1 AT1G56410 87.722 619 74 1 1 619 1 617 0.0 1122
MS.gene062454.t1 AT1G16030 83.231 650 103 3 1 648 1 646 0.0 1118
MS.gene062454.t1 AT5G42020 65.064 624 211 5 7 627 35 654 0.0 830
MS.gene062454.t1 AT5G42020 65.064 624 211 5 7 627 40 659 0.0 830
MS.gene062454.t1 AT5G28540 65.635 614 205 4 7 618 35 644 0.0 827
MS.gene062454.t1 AT1G09080 62.440 623 225 4 1 618 40 658 0.0 788
MS.gene062454.t1 AT1G09080 62.440 623 225 4 1 618 30 648 0.0 788
MS.gene062454.t1 AT5G02500 93.401 394 26 0 1 394 1 394 0.0 773
MS.gene062454.t1 AT5G02500 77.206 136 28 1 516 648 386 521 5.63e-57 201
MS.gene062454.t1 AT5G42020 58.974 624 194 10 7 627 35 599 0.0 701
MS.gene062454.t1 AT5G09590 52.931 580 243 10 10 580 60 618 0.0 560
MS.gene062454.t1 AT4G24280 49.186 614 286 11 10 617 81 674 0.0 539
MS.gene062454.t1 AT5G49910 48.644 627 295 11 10 628 81 688 0.0 538
MS.gene062454.t1 AT4G37910 51.730 578 253 9 10 578 55 615 0.0 531
MS.gene062454.t1 AT4G37910 51.730 578 253 9 10 578 55 615 0.0 531
MS.gene062454.t1 AT1G79930 29.468 733 416 14 10 648 4 729 6.36e-91 300
MS.gene062454.t1 AT2G32120 34.961 512 305 9 9 508 30 525 3.75e-90 291
MS.gene062454.t1 AT2G32120 34.961 512 305 9 9 508 30 525 3.75e-90 291
MS.gene062454.t1 AT1G79930 29.059 733 419 15 10 648 4 729 1.09e-88 293
MS.gene062454.t1 AT1G79920 35.845 438 265 4 10 434 4 438 1.20e-86 286
MS.gene062454.t1 AT1G79920 35.845 438 265 4 10 434 4 438 1.80e-86 286
MS.gene062454.t1 AT1G79920 35.845 438 265 4 10 434 4 438 1.80e-86 286
MS.gene062454.t1 AT1G79920 35.845 438 265 4 10 434 4 438 1.80e-86 286
MS.gene062454.t1 AT1G11660 27.111 675 405 11 10 619 4 656 3.16e-83 278
MS.gene062454.t1 AT1G11660 27.111 675 405 11 10 619 4 656 3.16e-83 278
MS.gene062454.t1 AT1G11660 27.111 675 405 11 10 619 4 656 3.16e-83 278
MS.gene062454.t1 AT1G11660 27.187 640 379 11 45 619 2 619 4.22e-75 255
MS.gene062454.t1 AT4G16660 25.802 717 420 18 3 612 44 755 1.37e-61 221
MS.gene062454.t1 AT4G16660 25.941 717 419 18 3 612 20 731 5.48e-61 219

Find 147 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGGAAAATTCGAGCTTTC+CGG 0.198288 7.3:-75614188 MS.gene062454:CDS
GGTTCAAGATTTGTTGCTTT+TGG 0.218491 7.3:-75614393 MS.gene062454:CDS
TAATCGACTTCTTCAATCTT+AGG 0.232445 7.3:+75613648 None:intergenic
TCTTAAACTCTTGAACAAAA+TGG 0.275265 7.3:+75614837 None:intergenic
AGAGAAAACTTGCTCCTTCT+TGG 0.282443 7.3:+75614289 None:intergenic
GTTCATGATGTTGTTCTTGT+TGG 0.297305 7.3:-75614563 MS.gene062454:CDS
TTACCGAAAACGGTGTTAAC+AGG 0.308664 7.3:+75616067 None:intergenic
CGTTCGGTTTCCTTGATCAT+TGG 0.309046 7.3:+75616165 None:intergenic
CGTATTCGTGTGTTGGAGTA+TGG 0.309119 7.3:-75616213 MS.gene062454:CDS
CAAAGTTCAGCAACTGTTGC+AGG 0.317428 7.3:-75614522 MS.gene062454:CDS
TGCTGAAGAAATTTCATCTA+TGG 0.318039 7.3:-75615215 MS.gene062454:CDS
GGACCAGCAGTAACCTTAAA+AGG 0.319176 7.3:+75615292 None:intergenic
CGATCAACAATGGCCGTAAA+AGG 0.321693 7.3:-75616271 None:intergenic
TGCAACAGTTGCTGAACTTT+GGG 0.329904 7.3:+75614524 None:intergenic
TGATACATCTTAGCAATGAT+TGG 0.339938 7.3:+75613741 None:intergenic
TCCCAACAAGTTGTTGTCTC+TGG 0.342182 7.3:+75614205 None:intergenic
CTCTCTCACCTTCATAAACT+TGG 0.342869 7.3:+75614234 None:intergenic
CTGCAACAGTTGCTGAACTT+TGG 0.347466 7.3:+75614523 None:intergenic
GATGTCACTCCATTGTCTCT+TGG 0.351591 7.3:-75614371 MS.gene062454:CDS
CTCCTTCTTGGTTGGAATTG+TGG 0.361148 7.3:+75614301 None:intergenic
CCATATGCAACAGCCTCGTC+TGG 0.361349 7.3:+75614461 None:intergenic
AAGGATGCCGGTGTTATTGC+TGG 0.363539 7.3:-75615085 MS.gene062454:CDS
AACTTAACATGGATCTGTTC+AGG 0.378060 7.3:-75614643 MS.gene062454:CDS
ACAGATGCTAAACGTTTGAT+TGG 0.381796 7.3:-75615361 MS.gene062454:intron
CCTCCAGCAGCAGGTGGTGC+TGG 0.395029 7.3:-75613672 MS.gene062454:CDS
TGCGTATGGTCTTGACAAAA+AGG 0.402154 7.3:-75615017 MS.gene062454:CDS
TCCATACCACCAGCCATATC+AGG 0.402194 7.3:+75613705 None:intergenic
GTTGGAATTGTGGTGTTCCT+TGG 0.407304 7.3:+75614311 None:intergenic
GGTTGATGCAAAGAATGCTT+TGG 0.410300 7.3:-75613949 MS.gene062454:CDS
TGAGATTGATTCTTTGTTTG+AGG 0.412145 7.3:-75614708 MS.gene062454:CDS
TCCTGCGATTGGAATAGATC+TGG 0.413134 7.3:-75616242 MS.gene062454:CDS
AGGTGGAGGTGCTCCTGATA+TGG 0.414427 7.3:-75613718 MS.gene062454:CDS
CGACAAAGGAAGGTTGTCTA+AGG 0.418046 7.3:-75614039 MS.gene062454:CDS
TCTGCTGAGGACAAAACAAC+TGG 0.419349 7.3:-75614089 MS.gene062454:CDS
TCCTGATATGGCTGGTGGTA+TGG 0.425793 7.3:-75613706 MS.gene062454:CDS
CTTGTAGTTAACACCAATCA+TGG 0.433031 7.3:+75615258 None:intergenic
CATGATGTTGTTCTTGTTGG+TGG 0.435475 7.3:-75614560 MS.gene062454:CDS
GAGATTGCCGAAGCTTATCT+TGG 0.435979 7.3:-75615175 MS.gene062454:CDS
TCTCTCAAACACTTCTCAAC+AGG 0.442304 7.3:+75614608 None:intergenic
TTTAAGGTTACTGCTGGTCC+TGG 0.442913 7.3:-75615289 MS.gene062454:CDS
AATAACACCGGCATCCTTTG+TGG 0.457869 7.3:+75615090 None:intergenic
AAAACTTGCTCCTTCTTGGT+TGG 0.457926 7.3:+75614293 None:intergenic
CTCAATCTCCGAAGTGCTCT+AGG 0.460918 7.3:+75614785 None:intergenic
ACGATTAAAGACGAGAAGAT+TGG 0.464209 7.3:-75613900 MS.gene062454:CDS
TAAGGAAGAAATTGAGAAGA+TGG 0.466344 7.3:-75614021 MS.gene062454:CDS
CCAGACGAGGCTGTTGCATA+TGG 0.468251 7.3:-75614461 MS.gene062454:CDS
AACCAGAGACAACAACTTGT+TGG 0.470053 7.3:-75614207 MS.gene062454:CDS
ACTCATCAGCCTCTGCCAAC+TGG 0.471841 7.3:+75613802 None:intergenic
CGGTGATGCTGCTAAGAATC+AGG 0.474840 7.3:-75616101 MS.gene062454:CDS
GGACCAGCACCACCTGCTGC+TGG 0.476038 7.3:+75613669 None:intergenic
CAAAATCTTCGCCACCAAGA+TGG 0.476601 7.3:+75614876 None:intergenic
GTGTTTGAGAGATGCTAAGA+TGG 0.478571 7.3:-75614597 MS.gene062454:CDS
ACTGCTGGTGATACCCATCT+TGG 0.479477 7.3:-75614890 MS.gene062454:CDS
GAGATTGATTCTTTGTTTGA+GGG 0.481259 7.3:-75614707 MS.gene062454:CDS
AGCTGAACCAAGATAAGCTT+CGG 0.483247 7.3:+75615168 None:intergenic
AAGAACAAGAAGGATATTAG+TGG 0.486274 7.3:-75614812 MS.gene062454:CDS
TTGCTGGTTTGAATGTTATG+AGG 0.486524 7.3:-75615069 MS.gene062454:CDS
ACCAGAGACAACAACTTGTT+GGG 0.487350 7.3:-75614206 MS.gene062454:CDS
CTGTTGCAGGACTTCTTCAA+TGG 0.487768 7.3:-75614509 MS.gene062454:CDS
GAGATCATCGCCAATGATCA+AGG 0.487997 7.3:-75616175 MS.gene062454:CDS
CAACGTAAGACGGCGTCGTT+CGG 0.492610 7.3:+75616149 None:intergenic
CCTTCCTTTGTCGTTGGTGA+TGG 0.494022 7.3:+75614049 None:intergenic
AAAATCTTCGCCACCAAGAT+GGG 0.495980 7.3:+75614877 None:intergenic
GGATCTGTTCAGGAAGTGTA+TGG 0.496195 7.3:-75614633 MS.gene062454:CDS
TTTGAAGTTAAGGCCACTGC+TGG 0.497920 7.3:-75614905 MS.gene062454:CDS
GGAGGTGCTCCTGATATGGC+TGG 0.498862 7.3:-75613714 MS.gene062454:CDS
ACGGGGAGCTGGAGGAATGC+CGG 0.501984 7.3:+75614169 None:intergenic
TGAGGAACACCACGGGGAGC+TGG 0.503287 7.3:+75614158 None:intergenic
AGAAATTGAGAAGATGGTTG+AGG 0.504892 7.3:-75614015 MS.gene062454:CDS
AATCACCCGTGCTAGGTTTG+AGG 0.506158 7.3:-75614666 MS.gene062454:CDS
AAAGGAGAAGGTCCTGCGAT+TGG 0.507290 7.3:-75616253 MS.gene062454:CDS
TGACGCTGCAATTCAGTGGT+TGG 0.507402 7.3:-75613832 MS.gene062454:CDS
ATCATTGCTAAGATGTATCA+AGG 0.508198 7.3:-75613738 MS.gene062454:CDS
ATGCTAAACGTTTGATTGGA+AGG 0.508528 7.3:-75615357 MS.gene062454:CDS
TCGAAGCAAACTGTGATTTG+AGG 0.510318 7.3:+75614140 None:intergenic
AATCGAAATCTTACCGAAAA+CGG 0.511172 7.3:+75616057 None:intergenic
GCAGGACTTCTTCAATGGTA+AGG 0.512874 7.3:-75614504 MS.gene062454:CDS
GATGAAGTTCCTCCAGCAGC+AGG 0.518012 7.3:-75613681 MS.gene062454:CDS
AAACAAAGAATCAATCTCAA+TGG 0.529138 7.3:+75614712 None:intergenic
CATGATTGGTGTTAACTACA+AGG 0.531338 7.3:-75615257 MS.gene062454:CDS
TGCTTCGACATTGATGCCAA+TGG 0.532548 7.3:-75614125 MS.gene062454:CDS
CCCAGATCTATTCCAATCGC+AGG 0.533456 7.3:+75616241 None:intergenic
GAGTGGTGAAGGAAATGAGA+AGG 0.541225 7.3:-75614414 MS.gene062454:CDS
TGAGTTTGAAGATAAGATGA+AGG 0.542099 7.3:-75613784 MS.gene062454:CDS
CGTCAAGCCACAAAGGATGC+CGG 0.544853 7.3:-75615097 MS.gene062454:CDS
ACACCACAATCACCCGTGCT+AGG 0.544924 7.3:-75614673 MS.gene062454:CDS
AGACAACCTTCCTTTGTCGT+TGG 0.545078 7.3:+75614043 None:intergenic
CCTGGTGAAAAGCCCATGAT+TGG 0.545365 7.3:-75615271 MS.gene062454:CDS
ACTGATAGTGAACGATTGAT+CGG 0.545823 7.3:-75616121 MS.gene062454:CDS
TCTCTTGGTCTAGAAACTGC+TGG 0.546967 7.3:-75614356 MS.gene062454:CDS
CCTGCGATTGGAATAGATCT+GGG 0.553696 7.3:-75616241 MS.gene062454:CDS
TCATGACTGTATTGATTCCA+AGG 0.554072 7.3:-75614328 MS.gene062454:CDS
AAACCTAGCACGGGTGATTG+TGG 0.557012 7.3:+75614670 None:intergenic
TGAGAGTCGTTGAAGTAAGC+TGG 0.557282 7.3:+75615121 None:intergenic
GAAATACAAGGCTGAAGATG+AGG 0.560874 7.3:-75613985 MS.gene062454:CDS
GCTGGTGATACCCATCTTGG+TGG 0.562989 7.3:-75614887 MS.gene062454:CDS
GTCTCTTCTTACTATTGAAG+AGG 0.563002 7.3:-75614933 MS.gene062454:CDS
TCAGTAAAAGCAACGTAAGA+CGG 0.567446 7.3:+75616139 None:intergenic
GTTTAAGAGGAAGAACAAGA+AGG 0.567567 7.3:-75614822 MS.gene062454:CDS
ACTGCAGCAGCTATTGCGTA+TGG 0.568324 7.3:-75615031 MS.gene062454:CDS
GTTTCTAGACCAAGAGACAA+TGG 0.570014 7.3:+75614362 None:intergenic
GGAACAACGTATTCGTGTGT+TGG 0.576773 7.3:-75616220 MS.gene062454:CDS
TCAATCTCCGAAGTGCTCTA+GGG 0.579128 7.3:+75614786 None:intergenic
GGACAGTAACCAGTTGGCAG+AGG 0.580101 7.3:-75613811 MS.gene062454:CDS
TAGCAATGATTGGATTGCAA+AGG 0.581264 7.3:+75613751 None:intergenic
CACCACAATTCCAACCAAGA+AGG 0.583129 7.3:-75614303 MS.gene062454:CDS
TAAGTTCCTCAAACCTAGCA+CGG 0.587266 7.3:+75614660 None:intergenic
TCTCTTCTTACTATTGAAGA+GGG 0.590747 7.3:-75614932 MS.gene062454:CDS
CATATGCAACAGCCTCGTCT+GGG 0.593425 7.3:+75614462 None:intergenic
CCAGCACCACCTGCTGCTGG+AGG 0.596593 7.3:+75613672 None:intergenic
GTGTTGATCCAAGTTTATGA+AGG 0.601048 7.3:-75614242 MS.gene062454:CDS
AGAGACATTCAAGATACCAT+TGG 0.601087 7.3:+75614109 None:intergenic
CCATCACCAACGACAAAGGA+AGG 0.602128 7.3:-75614049 MS.gene062454:CDS
GCTAAGATGTATCAAGGTGG+AGG 0.602520 7.3:-75613732 MS.gene062454:CDS
CTCTCAGCGTCAAGCCACAA+AGG 0.604101 7.3:-75615104 MS.gene062454:CDS
CAAAATCGCTGCTTGTACAG+CGG 0.607717 7.3:+75614436 None:intergenic
GTGGTTGGACAGTAACCAGT+TGG 0.608307 7.3:-75613817 MS.gene062454:CDS
AAGTTCCTCAAACCTAGCAC+GGG 0.609404 7.3:+75614661 None:intergenic
TTGTAGTTAACACCAATCAT+GGG 0.609538 7.3:+75615259 None:intergenic
TGTGATTTGAGGAACACCAC+GGG 0.611264 7.3:+75614151 None:intergenic
TACCGAAAACGGTGTTAACA+GGG 0.612530 7.3:+75616068 None:intergenic
ATTACCATCACCAACGACAA+AGG 0.613058 7.3:-75614053 MS.gene062454:CDS
ACAATGGCCGTAAAAGGAGA+AGG 0.621518 7.3:-75616265 MS.gene062454:CDS
TTCAGAGTGACATGAAGTTG+TGG 0.623777 7.3:-75615315 MS.gene062454:CDS
AAAACTACGCTTACAACATG+AGG 0.626171 7.3:-75613926 MS.gene062454:CDS
TAGGTTTGAGGAACTTAACA+TGG 0.627754 7.3:-75614654 MS.gene062454:CDS
GGAACACCACGGGGAGCTGG+AGG 0.631612 7.3:+75614161 None:intergenic
TGGTGTTAACTACAAGGGTG+AGG 0.634934 7.3:-75615251 MS.gene062454:CDS
CTGCTGAGGACAAAACAACT+GGG 0.640141 7.3:-75614088 MS.gene062454:CDS
GTGGTAACCCTAGAGCACTT+CGG 0.640725 7.3:-75614793 MS.gene062454:CDS
GGTGCTCCTGATATGGCTGG+TGG 0.645251 7.3:-75613711 MS.gene062454:CDS
TAAACTTGGATCAACACACC+TGG 0.648087 7.3:+75614248 None:intergenic
CAAGAGTATCAACCCAGACG+AGG 0.648278 7.3:-75614474 MS.gene062454:CDS
GAAGTTCCTCCAGCAGCAGG+TGG 0.652201 7.3:-75613678 MS.gene062454:CDS
CAATTGACGCTGCAATTCAG+TGG 0.657113 7.3:-75613836 MS.gene062454:CDS
ACATACTCAGACAATCAACC+AGG 0.659466 7.3:-75614266 MS.gene062454:CDS
AAGATGGGTATCACCAGCAG+TGG 0.661313 7.3:+75614892 None:intergenic
ATGATTGGTGTTAACTACAA+GGG 0.664773 7.3:-75615256 MS.gene062454:CDS
TGAGGAAGCAGAGAAATACA+AGG 0.667993 7.3:-75613997 MS.gene062454:CDS
CTGTGATTTGAGGAACACCA+CGG 0.668774 7.3:+75614150 None:intergenic
CTTGGTCTAGAAACTGCTGG+TGG 0.672600 7.3:-75614353 MS.gene062454:CDS
TACGCAATAGCTGCTGCAGT+AGG 0.675334 7.3:+75615034 None:intergenic
ATTCAAACCAGCAATAACAC+CGG 0.680140 7.3:+75615078 None:intergenic
GGCATTCCTCCAGCTCCCCG+TGG 0.680342 7.3:-75614167 MS.gene062454:CDS
TATCTTGAATGTCTCTGCTG+AGG 0.697510 7.3:-75614102 MS.gene062454:CDS
ATTGCTAAGATGTATCAAGG+TGG 0.733799 7.3:-75613735 MS.gene062454:CDS
GTGATTTGAGGAACACCACG+GGG 0.760451 7.3:+75614152 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAATAAATAATTAATCTA+GGG - chr7.3:75613992-75614011 MS.gene062454:CDS 10.0%
!! TGAAAATAAATAATTAATCT+AGG - chr7.3:75613991-75614010 MS.gene062454:CDS 10.0%
!! TTTATAATGATAGAACATTA+TGG - chr7.3:75614299-75614318 MS.gene062454:CDS 15.0%
!!! AATGTGTTGATTTTTGATTT+GGG - chr7.3:75614935-75614954 MS.gene062454:CDS 20.0%
!!! ACTTTTATTCTTATTGAATG+AGG - chr7.3:75614182-75614201 MS.gene062454:CDS 20.0%
!!! ATTTGTTTGTTTTTTTGAGT+TGG - chr7.3:75614264-75614283 MS.gene062454:CDS 20.0%
! AAACAAAGAATCAATCTCAA+TGG + chr7.3:75615200-75615219 None:intergenic 25.0%
! ATTAGATCCCTTATATTGAA+CGG - chr7.3:75614214-75614233 MS.gene062454:CDS 25.0%
! TCTTAAACTCTTGAACAAAA+TGG + chr7.3:75615075-75615094 None:intergenic 25.0%
!! ATTTTGTTCAAGAGTTTAAG+AGG - chr7.3:75615074-75615093 MS.gene062454:CDS 25.0%
!!! AATTAATCTAGGGTTTTATC+TGG - chr7.3:75614002-75614021 MS.gene062454:CDS 25.0%
!!! GAATGTGTTGATTTTTGATT+TGG - chr7.3:75614934-75614953 MS.gene062454:CDS 25.0%
!!! TTTGTTTTTTTGAGTTGGAT+TGG - chr7.3:75614269-75614288 MS.gene062454:CDS 25.0%
AAGAACAAGAAGGATATTAG+TGG - chr7.3:75615097-75615116 MS.gene062454:CDS 30.0%
AATCGAAATCTTACCGAAAA+CGG + chr7.3:75613855-75613874 None:intergenic 30.0%
ATCATTGCTAAGATGTATCA+AGG - chr7.3:75616171-75616190 MS.gene062454:CDS 30.0%
GAATTCACCGTTCAATATAA+GGG + chr7.3:75614224-75614243 None:intergenic 30.0%
TAAGGAAGAAATTGAGAAGA+TGG - chr7.3:75615888-75615907 MS.gene062454:intron 30.0%
TCTCTTCTTACTATTGAAGA+GGG - chr7.3:75614977-75614996 MS.gene062454:CDS 30.0%
TGAGTTTGAAGATAAGATGA+AGG - chr7.3:75616125-75616144 MS.gene062454:CDS 30.0%
TGATACATCTTAGCAATGAT+TGG + chr7.3:75616171-75616190 None:intergenic 30.0%
TGCTGAAGAAATTTCATCTA+TGG - chr7.3:75614694-75614713 MS.gene062454:CDS 30.0%
TTGTAGTTAACACCAATCAT+GGG + chr7.3:75614653-75614672 None:intergenic 30.0%
! AATCTTCTTTTTGTCATCAG+GGG + chr7.3:75616046-75616065 None:intergenic 30.0%
! CAATCTTCTTTTTGTCATCA+GGG + chr7.3:75616047-75616066 None:intergenic 30.0%
! GAGATTGATTCTTTGTTTGA+GGG - chr7.3:75615202-75615221 MS.gene062454:CDS 30.0%
! TAATCGACTTCTTCAATCTT+AGG + chr7.3:75616264-75616283 None:intergenic 30.0%
! TCAATCTTCTTTTTGTCATC+AGG + chr7.3:75616048-75616067 None:intergenic 30.0%
! TGAGATTGATTCTTTGTTTG+AGG - chr7.3:75615201-75615220 MS.gene062454:CDS 30.0%
! TTAGAAGTTTGTTTGCTCAT+TGG - chr7.3:75614503-75614522 MS.gene062454:CDS 30.0%
! TTGTTTGCTCATTGGTTATT+TGG - chr7.3:75614511-75614530 MS.gene062454:CDS 30.0%
!! ATGATTGGTGTTAACTACAA+GGG - chr7.3:75614653-75614672 MS.gene062454:CDS 30.0%
!! CGAAGATTTTGATAACAGAA+TGG - chr7.3:75615045-75615064 MS.gene062454:CDS 30.0%
!!! AGAGGGTATTTTTGAAGTTA+AGG - chr7.3:75614994-75615013 MS.gene062454:CDS 30.0%
!!! TTTTGAGTTGGATTGGAATA+TGG - chr7.3:75614276-75614295 MS.gene062454:CDS 30.0%
AAAACTACGCTTACAACATG+AGG - chr7.3:75615983-75616002 MS.gene062454:intron 35.0%
AACTTAACATGGATCTGTTC+AGG - chr7.3:75615266-75615285 MS.gene062454:CDS 35.0%
ACAGATGCTAAACGTTTGAT+TGG - chr7.3:75614548-75614567 MS.gene062454:CDS 35.0%
ACGATTAAAGACGAGAAGAT+TGG - chr7.3:75616009-75616028 MS.gene062454:intron 35.0%
AGAAATTGAGAAGATGGTTG+AGG - chr7.3:75615894-75615913 MS.gene062454:intron 35.0%
AGAGACATTCAAGATACCAT+TGG + chr7.3:75615803-75615822 None:intergenic 35.0%
AGATGAGGAACACAAAAAGA+AGG - chr7.3:75615939-75615958 MS.gene062454:intron 35.0%
ATGCTAAACGTTTGATTGGA+AGG - chr7.3:75614552-75614571 MS.gene062454:CDS 35.0%
ATTCAAACCAGCAATAACAC+CGG + chr7.3:75614834-75614853 None:intergenic 35.0%
ATTGCTAAGATGTATCAAGG+TGG - chr7.3:75616174-75616193 MS.gene062454:CDS 35.0%
CGAATTCACCGTTCAATATA+AGG + chr7.3:75614225-75614244 None:intergenic 35.0%
CTTGTAGTTAACACCAATCA+TGG + chr7.3:75614654-75614673 None:intergenic 35.0%
GTCTCTTCTTACTATTGAAG+AGG - chr7.3:75614976-75614995 MS.gene062454:CDS 35.0%
GTTCATGATGTTGTTCTTGT+TGG - chr7.3:75615346-75615365 MS.gene062454:CDS 35.0%
GTTTAAGAGGAAGAACAAGA+AGG - chr7.3:75615087-75615106 MS.gene062454:CDS 35.0%
TAGCAATGATTGGATTGCAA+AGG + chr7.3:75616161-75616180 None:intergenic 35.0%
TAGGTTTGAGGAACTTAACA+TGG - chr7.3:75615255-75615274 MS.gene062454:CDS 35.0%
TCAGTAAAAGCAACGTAAGA+CGG + chr7.3:75613773-75613792 None:intergenic 35.0%
! ACTGATAGTGAACGATTGAT+CGG - chr7.3:75613788-75613807 MS.gene062454:CDS 35.0%
! GTGTTGATCCAAGTTTATGA+AGG - chr7.3:75615667-75615686 MS.gene062454:intron 35.0%
!! CATGATTGGTGTTAACTACA+AGG - chr7.3:75614652-75614671 MS.gene062454:CDS 35.0%
!! TCATGACTGTATTGATTCCA+AGG - chr7.3:75615581-75615600 MS.gene062454:intron 35.0%
!! TTGCTGGTTTGAATGTTATG+AGG - chr7.3:75614840-75614859 MS.gene062454:CDS 35.0%
!!! GGTTCAAGATTTGTTGCTTT+TGG - chr7.3:75615516-75615535 MS.gene062454:intron 35.0%
!!! GTGTTGATTTTTGATTTGGG+AGG - chr7.3:75614938-75614957 MS.gene062454:CDS 35.0%
!!! TTGATTTTTGATTTGGGAGG+TGG - chr7.3:75614941-75614960 MS.gene062454:CDS 35.0%
AAAATCTTCGCCACCAAGAT+GGG + chr7.3:75615035-75615054 None:intergenic 40.0%
AAACCTTACCCCACTCAATT+GGG + chr7.3:75614347-75614366 None:intergenic 40.0%
AACCAGAGACAACAACTTGT+TGG - chr7.3:75615702-75615721 MS.gene062454:intron 40.0%
ACATACTCAGACAATCAACC+AGG - chr7.3:75615643-75615662 MS.gene062454:intron 40.0%
AGCTGAACCAAGATAAGCTT+CGG + chr7.3:75614744-75614763 None:intergenic 40.0%
ATTACCATCACCAACGACAA+AGG - chr7.3:75615856-75615875 MS.gene062454:intron 40.0%
CATGATGTTGTTCTTGTTGG+TGG - chr7.3:75615349-75615368 MS.gene062454:CDS 40.0%
CTCTCTCACCTTCATAAACT+TGG + chr7.3:75615678-75615697 None:intergenic 40.0%
GAAATACAAGGCTGAAGATG+AGG - chr7.3:75615924-75615943 MS.gene062454:intron 40.0%
GTGTTTGAGAGATGCTAAGA+TGG - chr7.3:75615312-75615331 MS.gene062454:CDS 40.0%
TAAACTTGGATCAACACACC+TGG + chr7.3:75615664-75615683 None:intergenic 40.0%
TAAGTTCCTCAAACCTAGCA+CGG + chr7.3:75615252-75615271 None:intergenic 40.0%
TATCTTGAATGTCTCTGCTG+AGG - chr7.3:75615807-75615826 MS.gene062454:intron 40.0%
TCGAAGCAAACTGTGATTTG+AGG + chr7.3:75615772-75615791 None:intergenic 40.0%
TCTCTCAAACACTTCTCAAC+AGG + chr7.3:75615304-75615323 None:intergenic 40.0%
TGAGGAAGCAGAGAAATACA+AGG - chr7.3:75615912-75615931 MS.gene062454:intron 40.0%
TGCAACAGTTGCTGAACTTT+GGG + chr7.3:75615388-75615407 None:intergenic 40.0%
TTCAGAGTGACATGAAGTTG+TGG - chr7.3:75614594-75614613 MS.gene062454:CDS 40.0%
TTGGGAAAATTCGAGCTTTC+CGG - chr7.3:75615721-75615740 MS.gene062454:intron 40.0%
! AAAACTTGCTCCTTCTTGGT+TGG + chr7.3:75615619-75615638 None:intergenic 40.0%
! AACCCTGTTAACACCGTTTT+CGG - chr7.3:75613839-75613858 MS.gene062454:CDS 40.0%
! ACCAGAGACAACAACTTGTT+GGG - chr7.3:75615703-75615722 MS.gene062454:intron 40.0%
! AGAGAAAACTTGCTCCTTCT+TGG + chr7.3:75615623-75615642 None:intergenic 40.0%
! CATGAAGTTGTGGCCTTTTA+AGG - chr7.3:75614604-75614623 MS.gene062454:CDS 40.0%
! GGTTGATGCAAAGAATGCTT+TGG - chr7.3:75615960-75615979 MS.gene062454:intron 40.0%
! GTTTCTAGACCAAGAGACAA+TGG + chr7.3:75615550-75615569 None:intergenic 40.0%
! TACCGAAAACGGTGTTAACA+GGG + chr7.3:75613844-75613863 None:intergenic 40.0%
! TGCGTATGGTCTTGACAAAA+AGG - chr7.3:75614892-75614911 MS.gene062454:CDS 40.0%
! TTACCGAAAACGGTGTTAAC+AGG + chr7.3:75613845-75613864 None:intergenic 40.0%
AAGTTCCTCAAACCTAGCAC+GGG + chr7.3:75615251-75615270 None:intergenic 45.0%
AATAACACCGGCATCCTTTG+TGG + chr7.3:75614822-75614841 None:intergenic 45.0%
AGACAACCTTCCTTTGTCGT+TGG + chr7.3:75615869-75615888 None:intergenic 45.0%
CAAAATCGCTGCTTGTACAG+CGG + chr7.3:75615476-75615495 None:intergenic 45.0%
CAAAATCTTCGCCACCAAGA+TGG + chr7.3:75615036-75615055 None:intergenic 45.0%
CAAACCTTACCCCACTCAAT+TGG + chr7.3:75614348-75614367 None:intergenic 45.0%
CAAAGTTCAGCAACTGTTGC+AGG - chr7.3:75615387-75615406 MS.gene062454:intron 45.0%
CAATTGACGCTGCAATTCAG+TGG - chr7.3:75616073-75616092 MS.gene062454:CDS 45.0%
CAATTGAGTGGGGTAAGGTT+TGG - chr7.3:75614346-75614365 MS.gene062454:CDS 45.0%
CACCACAATTCCAACCAAGA+AGG - chr7.3:75615606-75615625 MS.gene062454:intron 45.0%
CCTGCGATTGGAATAGATCT+GGG - chr7.3:75613668-75613687 MS.gene062454:CDS 45.0%
CGACAAAGGAAGGTTGTCTA+AGG - chr7.3:75615870-75615889 MS.gene062454:intron 45.0%
CGTATTCGTGTGTTGGAGTA+TGG - chr7.3:75613696-75613715 MS.gene062454:CDS 45.0%
CGTTCGGTTTCCTTGATCAT+TGG + chr7.3:75613747-75613766 None:intergenic 45.0%
CTCCTTCTTGGTTGGAATTG+TGG + chr7.3:75615611-75615630 None:intergenic 45.0%
CTGCAACAGTTGCTGAACTT+TGG + chr7.3:75615389-75615408 None:intergenic 45.0%
CTGCTGAGGACAAAACAACT+GGG - chr7.3:75615821-75615840 MS.gene062454:intron 45.0%
CTGTGATTTGAGGAACACCA+CGG + chr7.3:75615762-75615781 None:intergenic 45.0%
CTGTTGCAGGACTTCTTCAA+TGG - chr7.3:75615400-75615419 MS.gene062454:intron 45.0%
GACAAAAAGGCGACAAGTGT+TGG - chr7.3:75614905-75614924 MS.gene062454:CDS 45.0%
GAGATCATCGCCAATGATCA+AGG - chr7.3:75613734-75613753 MS.gene062454:CDS 45.0%
GAGATTGCCGAAGCTTATCT+TGG - chr7.3:75614734-75614753 MS.gene062454:CDS 45.0%
GAGTGGTGAAGGAAATGAGA+AGG - chr7.3:75615495-75615514 MS.gene062454:intron 45.0%
GATGTCACTCCATTGTCTCT+TGG - chr7.3:75615538-75615557 MS.gene062454:intron 45.0%
GCAGGACTTCTTCAATGGTA+AGG - chr7.3:75615405-75615424 MS.gene062454:intron 45.0%
GCTAAGATGTATCAAGGTGG+AGG - chr7.3:75616177-75616196 MS.gene062454:CDS 45.0%
GGAACAACGTATTCGTGTGT+TGG - chr7.3:75613689-75613708 MS.gene062454:CDS 45.0%
GGACCAGCAGTAACCTTAAA+AGG + chr7.3:75614620-75614639 None:intergenic 45.0%
GTTGGAATTGTGGTGTTCCT+TGG + chr7.3:75615601-75615620 None:intergenic 45.0%
TCCCAACAAGTTGTTGTCTC+TGG + chr7.3:75615707-75615726 None:intergenic 45.0%
TCCTGCGATTGGAATAGATC+TGG - chr7.3:75613667-75613686 MS.gene062454:CDS 45.0%
TCTCTTGGTCTAGAAACTGC+TGG - chr7.3:75615553-75615572 MS.gene062454:intron 45.0%
TCTGCTGAGGACAAAACAAC+TGG - chr7.3:75615820-75615839 MS.gene062454:intron 45.0%
TGAGAGTCGTTGAAGTAAGC+TGG + chr7.3:75614791-75614810 None:intergenic 45.0%
TGCTTCGACATTGATGCCAA+TGG - chr7.3:75615784-75615803 MS.gene062454:intron 45.0%
TGTGATTTGAGGAACACCAC+GGG + chr7.3:75615761-75615780 None:intergenic 45.0%
! GGATCTGTTCAGGAAGTGTA+TGG - chr7.3:75615276-75615295 MS.gene062454:CDS 45.0%
! GTACAAGCAGCGATTTTGAG+TGG - chr7.3:75615478-75615497 MS.gene062454:intron 45.0%
! TCAATCTCCGAAGTGCTCTA+GGG + chr7.3:75615126-75615145 None:intergenic 45.0%
! TGGTGTTAACTACAAGGGTG+AGG - chr7.3:75614658-75614677 MS.gene062454:CDS 45.0%
! TTTAAGGTTACTGCTGGTCC+TGG - chr7.3:75614620-75614639 MS.gene062454:CDS 45.0%
! TTTGAAGTTAAGGCCACTGC+TGG - chr7.3:75615004-75615023 MS.gene062454:CDS 45.0%
!!! TGGCCTTTTAAGGTTACTGC+TGG - chr7.3:75614614-75614633 MS.gene062454:CDS 45.0%
!!! TTTTTATATTGAAATTTAAT+TGG - chr7.3:75614475-75614494 MS.gene062454:CDS 5.0%
AAACCTAGCACGGGTGATTG+TGG + chr7.3:75615242-75615261 None:intergenic 50.0%
AAAGGAGAAGGTCCTGCGAT+TGG - chr7.3:75613656-75613675 MS.gene062454:CDS 50.0%
AAGATGGGTATCACCAGCAG+TGG + chr7.3:75615020-75615039 None:intergenic 50.0%
AATCACCCGTGCTAGGTTTG+AGG - chr7.3:75615243-75615262 MS.gene062454:CDS 50.0%
ACTGCAGCAGCTATTGCGTA+TGG - chr7.3:75614878-75614897 MS.gene062454:CDS 50.0%
ACTGCTGGTGATACCCATCT+TGG - chr7.3:75615019-75615038 MS.gene062454:CDS 50.0%
ATGTAGCCGACCCAATTGAG+TGG - chr7.3:75614334-75614353 MS.gene062454:CDS 50.0%
CATATGCAACAGCCTCGTCT+GGG + chr7.3:75615450-75615469 None:intergenic 50.0%
CCATCACCAACGACAAAGGA+AGG - chr7.3:75615860-75615879 MS.gene062454:intron 50.0%
CCCAGATCTATTCCAATCGC+AGG + chr7.3:75613671-75613690 None:intergenic 50.0%
CCTGGTGAAAAGCCCATGAT+TGG - chr7.3:75614638-75614657 MS.gene062454:CDS 50.0%
CGGTGATGCTGCTAAGAATC+AGG - chr7.3:75613808-75613827 MS.gene062454:CDS 50.0%
CTTACCCCACTCAATTGGGT+CGG + chr7.3:75614343-75614362 None:intergenic 50.0%
CTTGGTCTAGAAACTGCTGG+TGG - chr7.3:75615556-75615575 MS.gene062454:intron 50.0%
GTGATTTGAGGAACACCACG+GGG + chr7.3:75615760-75615779 None:intergenic 50.0%
GTGGTTGGACAGTAACCAGT+TGG - chr7.3:75616092-75616111 MS.gene062454:CDS 50.0%
TACGCAATAGCTGCTGCAGT+AGG + chr7.3:75614878-75614897 None:intergenic 50.0%
TCCATACCACCAGCCATATC+AGG + chr7.3:75616207-75616226 None:intergenic 50.0%
TCCTGATATGGCTGGTGGTA+TGG - chr7.3:75616203-75616222 MS.gene062454:CDS 50.0%
TGACGCTGCAATTCAGTGGT+TGG - chr7.3:75616077-75616096 MS.gene062454:CDS 50.0%
TGTAGCCGACCCAATTGAGT+GGG - chr7.3:75614335-75614354 MS.gene062454:CDS 50.0%
! CCAATCATGGGCTTTTCACC+AGG + chr7.3:75614641-75614660 None:intergenic 50.0%
! CCTTCCTTTGTCGTTGGTGA+TGG + chr7.3:75615863-75615882 None:intergenic 50.0%
! CGCAGGACCTTCTCCTTTTA+CGG + chr7.3:75613654-75613673 None:intergenic 50.0%
! CTCAATCTCCGAAGTGCTCT+AGG + chr7.3:75615127-75615146 None:intergenic 50.0%
! GTGGTAACCCTAGAGCACTT+CGG - chr7.3:75615116-75615135 MS.gene062454:CDS 50.0%
!! AAGGATGCCGGTGTTATTGC+TGG - chr7.3:75614824-75614843 MS.gene062454:CDS 50.0%
!! CAAGAGTATCAACCCAGACG+AGG - chr7.3:75615435-75615454 MS.gene062454:intron 50.0%
!! GCAGCGATTTTGAGTGGTGA+AGG - chr7.3:75615484-75615503 MS.gene062454:intron 50.0%
ACACCACAATCACCCGTGCT+AGG - chr7.3:75615236-75615255 MS.gene062454:CDS 55.0%
ACTCATCAGCCTCTGCCAAC+TGG + chr7.3:75616110-75616129 None:intergenic 55.0%
CAACGTAAGACGGCGTCGTT+CGG + chr7.3:75613763-75613782 None:intergenic 55.0%
CCAGACGAGGCTGTTGCATA+TGG - chr7.3:75615448-75615467 MS.gene062454:intron 55.0%
CCATATGCAACAGCCTCGTC+TGG + chr7.3:75615451-75615470 None:intergenic 55.0%
CGACCCAATTGAGTGGGGTA+AGG - chr7.3:75614341-75614360 MS.gene062454:CDS 55.0%
CGTCAAGCCACAAAGGATGC+CGG - chr7.3:75614812-75614831 MS.gene062454:CDS 55.0%
CTCTCAGCGTCAAGCCACAA+AGG - chr7.3:75614805-75614824 MS.gene062454:CDS 55.0%
GATGAAGTTCCTCCAGCAGC+AGG - chr7.3:75616228-75616247 MS.gene062454:CDS 55.0%
GCTGGTGATACCCATCTTGG+TGG - chr7.3:75615022-75615041 MS.gene062454:CDS 55.0%
GGACAGTAACCAGTTGGCAG+AGG - chr7.3:75616098-75616117 MS.gene062454:CDS 55.0%
GTAGCCGACCCAATTGAGTG+GGG - chr7.3:75614336-75614355 MS.gene062454:CDS 55.0%
!! AGGTGGAGGTGCTCCTGATA+TGG - chr7.3:75616191-75616210 MS.gene062454:CDS 55.0%
GAAGTTCCTCCAGCAGCAGG+TGG - chr7.3:75616231-75616250 MS.gene062454:CDS 60.0%
GGTGCTCCTGATATGGCTGG+TGG - chr7.3:75616198-75616217 MS.gene062454:CDS 60.0%
!! GGAGGTGCTCCTGATATGGC+TGG - chr7.3:75616195-75616214 MS.gene062454:CDS 60.0%
ACGGGGAGCTGGAGGAATGC+CGG + chr7.3:75615743-75615762 None:intergenic 65.0%
TGAGGAACACCACGGGGAGC+TGG + chr7.3:75615754-75615773 None:intergenic 65.0%
CCAGCACCACCTGCTGCTGG+AGG + chr7.3:75616240-75616259 None:intergenic 70.0%
CCTCCAGCAGCAGGTGGTGC+TGG - chr7.3:75616237-75616256 MS.gene062454:CDS 70.0%
GGAACACCACGGGGAGCTGG+AGG + chr7.3:75615751-75615770 None:intergenic 70.0%
GGACCAGCACCACCTGCTGC+TGG + chr7.3:75616243-75616262 None:intergenic 70.0%
GGCATTCCTCCAGCTCCCCG+TGG - chr7.3:75615742-75615761 MS.gene062454:intron 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 75613647 75616284 75613647 ID=MS.gene062454
chr7.3 mRNA 75613647 75616284 75613647 ID=MS.gene062454.t1;Parent=MS.gene062454
chr7.3 exon 75616071 75616284 75616071 ID=MS.gene062454.t1.exon1;Parent=MS.gene062454.t1
chr7.3 CDS 75616071 75616284 75616071 ID=cds.MS.gene062454.t1;Parent=MS.gene062454.t1
chr7.3 exon 75613647 75615379 75613647 ID=MS.gene062454.t1.exon2;Parent=MS.gene062454.t1
chr7.3 CDS 75613647 75615379 75613647 ID=cds.MS.gene062454.t1;Parent=MS.gene062454.t1
Gene Sequence

>MS.gene062454

ATGGCCGTAAAAGGAGAAGGTCCTGCGATTGGAATAGATCTGGGAACAACGTATTCGTGTGTTGGAGTATGGCAACACGATCGTGTTGAGATCATCGCCAATGATCAAGGAAACCGAACGACGCCGTCTTACGTTGCTTTTACTGATAGTGAACGATTGATCGGTGATGCTGCTAAGAATCAGGTTGCGATGAACCCTGTTAACACCGTTTTCGGTAAGATTTCGATTCTGAACATTCACATTATTAAAGTTTTGATTTTGATATGCAGATTGTGATTTCATTGTTATATGTACAGCATTGTCGTTATTACGTTATATTGTACATTGTAATTTTTTTTTATTGTTGAAAATAAATAATTAATCTAGGGTTTTATCTGGTTAATTTTCAATTATTTGTTTGTTGTGATTTGAAGCTTGTGAGTTCTTTAATGTATATGATGATGTTTGTTAAATTAAATAATTAATTATTGAACATTATAACTTTTGTTGATAGAATGAACATTATTATATCATTATATGCTGTTATATTATATTTACTTTTATTCTTATTGAATGAGGTTTAGAATAATTAGATCCCTTATATTGAACGGTGAATTCGTAGTCATTTACTGAGTGTAATTTGTTTGTTTTTTTGAGTTGGATTGGAATATGGTTTATAATGATAGAACATTATGGTGTAATTTGATCATGTAGCCGACCCAATTGAGTGGGGTAAGGTTTGGTTGTTGTTGTTGATGATGAATGAGTCTGTGTCTTAATTAAATAGTATCATGCAAAAGATTGATTTAATATGATGATATTTGATAAGCTTGATTGTTATTTATTTATTTTTTATATTGAAATTTAATTGGTTTATTTAGAAGTTTGTTTGCTCATTGGTTATTTGGATGTGTATGATAAAACAGATGCTAAACGTTTGATTGGAAGGAGAGTTTCTGATGCATCTGTTCAGAGTGACATGAAGTTGTGGCCTTTTAAGGTTACTGCTGGTCCTGGTGAAAAGCCCATGATTGGTGTTAACTACAAGGGTGAGGACAAGCAATTTGCTGCTGAAGAAATTTCATCTATGGTGCTCATGAAGATGCGTGAGATTGCCGAAGCTTATCTTGGTTCAGCTGTGAAGAATGCTGTTGTTACAGTTCCAGCTTACTTCAACGACTCTCAGCGTCAAGCCACAAAGGATGCCGGTGTTATTGCTGGTTTGAATGTTATGAGGATTATCAATGAGCCTACTGCAGCAGCTATTGCGTATGGTCTTGACAAAAAGGCGACAAGTGTTGGCGAGAAGAATGTGTTGATTTTTGATTTGGGAGGTGGTACTTTTGATGTGTCTCTTCTTACTATTGAAGAGGGTATTTTTGAAGTTAAGGCCACTGCTGGTGATACCCATCTTGGTGGCGAAGATTTTGATAACAGAATGGTTAACCATTTTGTTCAAGAGTTTAAGAGGAAGAACAAGAAGGATATTAGTGGTAACCCTAGAGCACTTCGGAGATTGAGAACTGCTTGTGAGAGAGCGAAGAGAACTCTCTCATCTACTGCACAAACTACCATTGAGATTGATTCTTTGTTTGAGGGTGTTGATTTTTACACCACAATCACCCGTGCTAGGTTTGAGGAACTTAACATGGATCTGTTCAGGAAGTGTATGGAGCCTGTTGAGAAGTGTTTGAGAGATGCTAAGATGGATAAGAACTCTGTTCATGATGTTGTTCTTGTTGGTGGTTCAACTAGAATTCCCAAAGTTCAGCAACTGTTGCAGGACTTCTTCAATGGTAAGGAGCTTTGCAAGAGTATCAACCCAGACGAGGCTGTTGCATATGGTGCCGCTGTACAAGCAGCGATTTTGAGTGGTGAAGGAAATGAGAAGGTTCAAGATTTGTTGCTTTTGGATGTCACTCCATTGTCTCTTGGTCTAGAAACTGCTGGTGGTGTCATGACTGTATTGATTCCAAGGAACACCACAATTCCAACCAAGAAGGAGCAAGTTTTCTCTACATACTCAGACAATCAACCAGGTGTGTTGATCCAAGTTTATGAAGGTGAGAGAGCAAGAACCAGAGACAACAACTTGTTGGGAAAATTCGAGCTTTCCGGCATTCCTCCAGCTCCCCGTGGTGTTCCTCAAATCACAGTTTGCTTCGACATTGATGCCAATGGTATCTTGAATGTCTCTGCTGAGGACAAAACAACTGGGCAGAAGAACAAGATTACCATCACCAACGACAAAGGAAGGTTGTCTAAGGAAGAAATTGAGAAGATGGTTGAGGAAGCAGAGAAATACAAGGCTGAAGATGAGGAACACAAAAAGAAGGTTGATGCAAAGAATGCTTTGGAAAACTACGCTTACAACATGAGGAACACGATTAAAGACGAGAAGATTGGATCAAAGCTTTCCCCTGATGACAAAAAGAAGATTGATGATGCAATTGACGCTGCAATTCAGTGGTTGGACAGTAACCAGTTGGCAGAGGCTGATGAGTTTGAAGATAAGATGAAGGAACTTGAGAGCCTTTGCAATCCAATCATTGCTAAGATGTATCAAGGTGGAGGTGCTCCTGATATGGCTGGTGGTATGGATGATGAAGTTCCTCCAGCAGCAGGTGGTGCTGGTCCTAAGATTGAAGAAGTCGATTAA

Protein sequence

>MS.gene062454.t1

MAVKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPVNTVFDAKRLIGRRVSDASVQSDMKLWPFKVTAGPGEKPMIGVNYKGEDKQFAAEEISSMVLMKMREIAEAYLGSAVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFEGVDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKNSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVEEAEKYKAEDEEHKKKVDAKNALENYAYNMRNTIKDEKIGSKLSPDDKKKIDDAIDAAIQWLDSNQLAEADEFEDKMKELESLCNPIIAKMYQGGGAPDMAGGMDDEVPPAAGGAGPKIEEVD