AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062695

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062695.t1 MTR_6g039440 68.841 552 172 0 4 555 1 552 0.0 817
MS.gene062695.t1 MTR_6g008560 68.165 556 176 1 1 555 1 556 0.0 814
MS.gene062695.t1 MTR_5g062230 69.910 555 164 1 1 555 1 552 0.0 810
MS.gene062695.t1 MTR_4g048460 68.354 553 175 0 3 555 8 560 0.0 793
MS.gene062695.t1 MTR_3g464190 67.027 555 182 1 1 554 1 555 0.0 789
MS.gene062695.t1 MTR_5g073200 66.360 544 182 1 12 554 4 547 0.0 749
MS.gene062695.t1 MTR_5g073260 63.914 557 193 3 1 555 1 551 0.0 744
MS.gene062695.t1 MTR_5g094620 63.243 555 185 2 1 555 1 536 0.0 742
MS.gene062695.t1 MTR_4g081460 57.374 556 234 2 2 555 7 561 0.0 665
MS.gene062695.t1 MTR_4g048460 67.615 457 148 0 3 459 8 464 0.0 639
MS.gene062695.t1 MTR_6g008560 68.250 400 127 0 156 555 1 400 0.0 593
MS.gene062695.t1 MTR_2g082010 44.286 560 304 7 1 554 9 566 4.37e-176 509
MS.gene062695.t1 MTR_2g081980 44.872 546 293 7 15 554 12 555 2.74e-173 502
MS.gene062695.t1 MTR_8g007515 45.803 548 289 6 13 554 9 554 1.12e-170 495
MS.gene062695.t1 MTR_2g082060 42.883 562 300 9 1 554 3 551 1.63e-161 472
MS.gene062695.t1 MTR_4g019550 41.489 564 305 9 2 554 7 556 2.31e-145 431
MS.gene062695.t1 MTR_2g082050 40.039 507 245 8 53 556 9 459 1.24e-126 379
MS.gene062695.t1 MTR_4g045810 34.799 546 345 4 13 554 41 579 2.04e-114 352
MS.gene062695.t1 MTR_2g064425 35.675 541 338 6 17 555 53 585 1.29e-107 334
MS.gene062695.t1 MTR_2g089120 35.922 515 307 9 49 556 67 565 1.99e-107 333
MS.gene062695.t1 MTR_2g089130 34.442 511 317 6 49 555 67 563 6.43e-105 327
MS.gene062695.t1 MTR_8g057020 33.333 549 357 6 9 555 47 588 3.88e-98 310
MS.gene062695.t1 MTR_2g064425 34.011 541 332 7 17 555 53 570 1.97e-97 307
MS.gene062695.t1 MTR_2g065450 32.605 549 357 6 10 555 51 589 8.44e-95 301
MS.gene062695.t1 MTR_7g010710 31.183 558 373 7 1 553 1 552 6.66e-88 282
MS.gene062695.t1 MTR_2g064425 43.251 363 194 7 17 376 53 406 6.38e-87 276
MS.gene062695.t1 MTR_4g092020 31.977 516 336 7 44 554 64 569 2.88e-85 276
MS.gene062695.t1 MTR_4g092010 30.909 550 367 10 5 548 14 556 6.44e-85 275
MS.gene062695.t1 MTR_7g057340 67.251 171 56 0 385 555 1 171 1.88e-83 257
MS.gene062695.t1 MTR_7g057390 66.082 171 55 1 385 555 1 168 2.87e-78 244
MS.gene062695.t1 MTR_5g094530 59.361 219 51 4 166 381 1 184 6.05e-78 244
MS.gene062695.t1 MTR_2g064425 40.771 363 188 8 17 376 53 391 1.36e-76 248
MS.gene062695.t1 MTR_2g010960 29.143 525 345 9 42 547 2 518 1.79e-74 246
MS.gene062695.t1 MTR_6g064980 30.200 500 324 9 54 538 13 502 1.09e-70 236
MS.gene062695.t1 MTR_3g063170 29.485 485 329 8 54 529 13 493 7.00e-68 228
MS.gene062695.t1 MTR_3g465090 29.592 490 332 7 54 534 13 498 1.74e-67 227
MS.gene062695.t1 MTR_3g063120 28.657 499 329 9 68 550 1 488 2.37e-66 224
MS.gene062695.t1 MTR_3g063140 29.637 496 324 9 54 534 13 498 3.03e-66 224
MS.gene062695.t1 MTR_3g052120 29.608 510 336 9 54 550 13 512 7.68e-65 220
MS.gene062695.t1 MTR_7g050990 61.446 166 53 2 199 364 27 181 1.14e-58 210
MS.gene062695.t1 MTR_6g065040 28.889 405 270 7 138 534 2 396 1.30e-54 190
MS.gene062695.t1 MTR_3g015080 45.614 171 55 2 385 555 1 133 2.22e-43 151
MS.gene062695.t1 MTR_3g063160 31.636 275 172 5 63 328 21 288 5.94e-36 136
MS.gene062695.t1 MTR_2g012870 24.433 573 393 16 10 554 194 754 2.80e-34 138
MS.gene062695.t1 MTR_3g058160 25.813 523 332 17 70 554 65 569 1.13e-33 135
MS.gene062695.t1 MTR_2g064295 24.612 516 347 15 70 554 256 760 1.21e-33 136
MS.gene062695.t1 MTR_3g058160 25.813 523 332 17 70 554 269 773 2.56e-33 135
MS.gene062695.t1 MTR_3g058160 25.813 523 332 17 70 554 256 760 2.59e-33 135
MS.gene062695.t1 MTR_3g058160 25.813 523 332 17 70 554 276 780 2.72e-33 135
MS.gene062695.t1 MTR_2g012900 25.145 517 336 17 10 486 194 699 5.77e-32 131
MS.gene062695.t1 MTR_3g058160 25.184 544 330 18 70 554 276 801 1.18e-30 127
MS.gene062695.t1 MTR_7g094970 28.832 274 165 7 68 313 206 477 7.00e-26 112
MS.gene062695.t1 MTR_7g011663 30.909 275 156 7 68 310 344 616 2.40e-25 111
MS.gene062695.t1 MTR_5g030050 30.189 265 150 8 73 312 3 257 8.35e-24 102
MS.gene062695.t1 MTR_7g011770 30.068 296 176 8 68 334 240 533 4.48e-23 103
MS.gene062695.t1 MTR_5g081730 37.273 110 64 1 153 257 2 111 1.33e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062695.t1 AT5G23960 40.293 546 319 5 13 555 3 544 3.13e-151 445
MS.gene062695.t1 AT5G23960 40.328 548 318 6 13 555 3 546 1.97e-150 443
MS.gene062695.t1 AT1G70080 37.634 558 338 7 5 554 54 609 8.21e-128 387
MS.gene062695.t1 AT3G14490 37.912 546 327 7 17 555 60 600 3.29e-122 372
MS.gene062695.t1 AT3G14520 36.667 540 332 6 22 555 68 603 4.58e-122 372
MS.gene062695.t1 AT1G31950 36.111 540 335 5 22 555 70 605 9.22e-121 369
MS.gene062695.t1 AT1G31950 36.044 541 335 6 22 555 70 606 3.92e-120 367
MS.gene062695.t1 AT3G14540 36.920 539 332 4 22 555 65 600 4.91e-120 367
MS.gene062695.t1 AT5G44630 35.221 565 345 8 1 554 1 555 8.51e-115 352
MS.gene062695.t1 AT1G33750 35.019 534 341 4 24 555 73 602 3.15e-114 352
MS.gene062695.t1 AT3G32030 34.815 540 344 6 22 556 68 604 1.12e-112 348
MS.gene062695.t1 AT4G13300 36.617 538 328 7 25 554 20 552 6.42e-112 344
MS.gene062695.t1 AT3G29410 34.502 542 349 5 17 555 64 602 2.66e-111 344
MS.gene062695.t1 AT4G20210 34.249 546 346 7 17 554 58 598 5.29e-109 338
MS.gene062695.t1 AT4G20200 35.521 518 316 9 48 554 92 602 9.81e-107 332
MS.gene062695.t1 AT4G13280 36.194 536 329 7 27 554 22 552 2.19e-106 330
MS.gene062695.t1 AT3G29190 34.393 535 325 9 38 555 75 600 2.99e-106 331
MS.gene062695.t1 AT4G15870 34.657 554 336 10 9 554 61 596 4.66e-106 330
MS.gene062695.t1 AT3G29410 34.800 500 320 4 59 555 1 497 2.69e-105 325
MS.gene062695.t1 AT3G14540 37.444 446 272 3 22 463 65 507 1.78e-100 313
MS.gene062695.t1 AT1G31950 36.105 457 281 6 22 471 70 522 2.68e-100 313
MS.gene062695.t1 AT4G20230 32.679 560 352 10 6 552 66 613 3.13e-100 316
MS.gene062695.t1 AT4G20230 32.679 560 352 10 6 552 54 601 4.02e-100 315
MS.gene062695.t1 AT4G16730 31.793 541 352 7 28 555 2 538 1.31e-98 310
MS.gene062695.t1 AT3G29110 34.312 545 347 9 17 554 55 595 7.92e-97 306
MS.gene062695.t1 AT2G23230 33.516 546 348 9 16 551 55 595 8.18e-97 307
MS.gene062695.t1 AT4G13280 35.075 536 305 9 27 554 22 522 5.15e-95 300
MS.gene062695.t1 AT4G16730 32.121 495 321 5 73 555 1 492 1.38e-94 298
MS.gene062695.t1 AT2G23230 33.333 546 344 10 16 551 55 590 3.49e-94 300
MS.gene062695.t1 AT1G66020 32.169 544 360 6 17 554 56 596 3.96e-93 297
MS.gene062695.t1 AT1G48800 31.319 546 359 9 17 552 63 602 3.10e-91 292
MS.gene062695.t1 AT2G24210 31.362 558 364 9 10 555 39 589 7.20e-91 291
MS.gene062695.t1 AT4G16740 31.712 555 356 10 12 555 21 563 1.24e-90 290
MS.gene062695.t1 AT3G25830 31.541 558 356 12 15 555 45 593 8.81e-88 283
MS.gene062695.t1 AT3G25820 31.541 558 356 12 15 555 45 593 8.81e-88 283
MS.gene062695.t1 AT3G25810 31.794 563 351 12 15 555 45 596 9.13e-88 283
MS.gene062695.t1 AT1G61680 31.238 541 348 7 1 534 34 557 5.91e-87 280
MS.gene062695.t1 AT1G61680 30.869 541 343 8 1 534 34 550 1.49e-83 271
MS.gene062695.t1 AT5G48110 37.647 340 207 5 216 554 2 337 1.84e-83 263
MS.gene062695.t1 AT1G48820 30.612 539 324 11 17 549 63 557 6.04e-80 261
MS.gene062695.t1 AT4G16740 35.955 356 210 6 12 357 21 368 3.42e-70 231
MS.gene062695.t1 AT3G25820 32.902 386 240 8 15 389 45 422 7.69e-66 221
MS.gene062695.t1 AT1G66020 33.875 369 235 6 17 379 56 421 9.21e-64 215
MS.gene062695.t1 AT4G16740 35.866 329 193 6 12 330 21 341 3.47e-62 209
MS.gene062695.t1 AT4G16740 35.866 329 193 6 12 330 21 341 3.47e-62 209
MS.gene062695.t1 AT3G25820 34.251 327 196 8 15 330 45 363 1.41e-56 195
MS.gene062695.t1 AT3G25820 34.251 327 196 8 15 330 45 363 1.41e-56 195
MS.gene062695.t1 AT1G61120 24.125 514 346 13 68 554 286 782 5.87e-29 122
MS.gene062695.t1 AT1G79460 23.507 519 348 19 70 554 274 777 5.62e-27 116
MS.gene062695.t1 AT4G02780 30.651 261 151 7 68 300 329 587 4.53e-24 107

Find 93 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTACTTACGTTGGCAAAAT+TGG 0.135143 6.4:-45342679 MS.gene062695:CDS
ATTCTATTTCTGTGCTATTT+AGG 0.140011 6.4:-45343681 MS.gene062695:CDS
TTCTATTTCTGTGCTATTTA+GGG 0.183039 6.4:-45343680 MS.gene062695:CDS
CTGCTGTTCATTGCAGGCTT+AGG 0.241228 6.4:-45341149 MS.gene062695:CDS
AGCCTACATCAAAAGGAATT+TGG 0.257080 6.4:-45342639 MS.gene062695:CDS
ACGTAAGTAGAATTTCATTA+TGG 0.259315 6.4:+45342691 None:intergenic
GATTCATGGTGAGAAAATTT+TGG 0.259321 6.4:-45342877 MS.gene062695:CDS
TCCGTATGCTTCAGAATCTT+TGG 0.269105 6.4:-45344430 MS.gene062695:intron
GTCATCAATGTATGATAAAA+TGG 0.271835 6.4:+45342369 None:intergenic
ATGCTGCTGCTGTTCATTGC+AGG 0.286868 6.4:-45341155 MS.gene062695:CDS
CAGATTTCCACCCTAGCGTT+TGG 0.305039 6.4:-45344467 MS.gene062695:CDS
AGATTTCCACCCTAGCGTTT+GGG 0.318717 6.4:-45344466 MS.gene062695:CDS
AGACGAAATTAATCAAGTTT+TGG 0.321368 6.4:-45343761 MS.gene062695:CDS
TTCCTTGCTTGTCCTTGAAT+TGG 0.334271 6.4:+45342967 None:intergenic
TAGTTGTTTGGATGATCTTC+CGG 0.341349 6.4:-45342021 MS.gene062695:CDS
GAGTAGTAGAATGTTGCTTT+TGG 0.347068 6.4:-45342456 MS.gene062695:CDS
TTATATGAGGGAATATGATA+TGG 0.360767 6.4:-45340799 MS.gene062695:CDS
CCAATTGAAGATATCATTTG+TGG 0.372281 6.4:+45341203 None:intergenic
TTCATGTACTCCTCTGTTGT+TGG 0.374525 6.4:+45341294 None:intergenic
TGCTGTTCATTGCAGGCTTA+GGG 0.376798 6.4:-45341148 MS.gene062695:CDS
CCACAAATGATATCTTCAAT+TGG 0.377027 6.4:-45341203 MS.gene062695:CDS
CGTAAGTAGAATTTCATTAT+GGG 0.378944 6.4:+45342692 None:intergenic
AAACGTAATGGAACTTTAGT+TGG 0.382677 6.4:+45340699 None:intergenic
TAGGTGGGATATTAGTTGTT+TGG 0.387739 6.4:-45342033 MS.gene062695:CDS
GGATGAATCTTGCTCATAGA+TGG 0.390050 6.4:+45342713 None:intergenic
GATTGACTCAATATGTCGTT+TGG 0.390339 6.4:-45343803 MS.gene062695:CDS
CATACTTGGAATGTTATATG+AGG 0.398446 6.4:-45340812 MS.gene062695:CDS
AGGACATGTTGCTTCATACT+TGG 0.399041 6.4:-45340826 MS.gene062695:CDS
ATATAAATGAGGAATGTCTT+AGG 0.410838 6.4:-45340722 MS.gene062695:CDS
TCGCAAGAGAAGGACTCAAT+TGG 0.412353 6.4:+45342808 None:intergenic
AAAAGAAAATTGACAATGCT+TGG 0.419595 6.4:-45340749 MS.gene062695:CDS
TAGAGAAACTTCATGTAATC+CGG 0.427919 6.4:+45342002 None:intergenic
GTTTCTCTATAAACCACTCT+TGG 0.439981 6.4:-45341988 MS.gene062695:CDS
GCTCCAAAGCCTACATCAAA+AGG 0.450495 6.4:-45342646 MS.gene062695:CDS
TACGACTTCTTACATTGGAA+TGG 0.454510 6.4:-45341235 MS.gene062695:CDS
CACAAATGATATCTTCAATT+GGG 0.456797 6.4:-45341202 MS.gene062695:CDS
ACTACTCTGTCCCGTGCATA+AGG 0.457542 6.4:+45342472 None:intergenic
ACGACTTCTTACATTGGAAT+GGG 0.460983 6.4:-45341234 MS.gene062695:CDS
TTCCTTGCTTGACAATATTG+AGG 0.465049 6.4:+45342412 None:intergenic
GCCTCACATATGATGATTCA+TGG 0.465433 6.4:-45342891 MS.gene062695:CDS
ACCAAAATCAATGCTCATGT+TGG 0.473653 6.4:+45340555 None:intergenic
ATTGACTCAATATGTCGTTT+GGG 0.473862 6.4:-45343802 MS.gene062695:CDS
AGATGTATTCAACCAATTCA+AGG 0.477088 6.4:-45342979 MS.gene062695:CDS
GAGCAAGAAGTGAAGAAAGA+AGG 0.477567 6.4:-45341948 MS.gene062695:CDS
CGCAAGAGAAGGACTCAATT+GGG 0.484801 6.4:+45342809 None:intergenic
AACATTGATCATAGATGTTG+AGG 0.496538 6.4:-45342934 MS.gene062695:CDS
AACAATATCAAGTGGTTACC+CGG 0.513550 6.4:-45341265 MS.gene062695:CDS
ATCAATGCTCATGTTGGGAT+GGG 0.522554 6.4:+45340561 None:intergenic
CATGGTCTTTACGTTTCACC+TGG 0.523602 6.4:-45343646 MS.gene062695:intron
ATATAGGTGGTGGAAGGAGT+TGG 0.524102 6.4:-45342512 MS.gene062695:intron
AGCCTCAATATTGTCAAGCA+AGG 0.528176 6.4:-45342414 MS.gene062695:CDS
CTGTGCTATTTAGGGTGTTG+AGG 0.528533 6.4:-45343672 MS.gene062695:CDS
AATCAATGCTCATGTTGGGA+TGG 0.533171 6.4:+45340560 None:intergenic
TGGCCTCACTCATGTAAGCT+TGG 0.536408 6.4:+45341340 None:intergenic
ATCAAGTGGTTACCCGGTGT+TGG 0.539295 6.4:-45341259 MS.gene062695:CDS
GATTTCCACCCTAGCGTTTG+GGG 0.542721 6.4:-45344465 MS.gene062695:CDS
CCAAAATCAATGCTCATGTT+GGG 0.544647 6.4:+45340556 None:intergenic
TTGTCAAGCAAGGAAAATGA+TGG 0.545763 6.4:-45342404 MS.gene062695:CDS
GCAAATTGATAAACTAAAAG+AGG 0.546970 6.4:-45343881 MS.gene062695:CDS
TAGCTTCTTGCCTCTAGCCT+AGG 0.554871 6.4:+45342741 None:intergenic
ATACTTGGAATGTTATATGA+GGG 0.559157 6.4:-45340811 MS.gene062695:CDS
GACAAGCAAATCATTAATGT+AGG 0.560101 6.4:+45340587 None:intergenic
TTGACTTGTGTCGCAAGAGA+AGG 0.560387 6.4:+45342798 None:intergenic
GGAATTTGATATAAATATTG+CGG 0.567112 6.4:-45343905 MS.gene062695:CDS
CTTGCGACACAAGTCAAACA+TGG 0.567322 6.4:-45342792 MS.gene062695:CDS
TTTAGGGTGTTGAGGCAACA+TGG 0.568035 6.4:-45343664 MS.gene062695:CDS
AATGGAGAAATAACTCTCAA+AGG 0.571243 6.4:-45343712 MS.gene062695:CDS
TTGGCTACGACTTCTTACAT+TGG 0.575246 6.4:-45341240 MS.gene062695:CDS
AAGCTTACATGAGTGAGGCC+AGG 0.576657 6.4:-45341338 MS.gene062695:CDS
ATAGCACAGAAATAGAATGA+AGG 0.580450 6.4:+45343686 None:intergenic
ACATTGATCATAGATGTTGA+GGG 0.583676 6.4:-45342933 MS.gene062695:CDS
GATGACACGTATGATGCATA+CGG 0.587584 6.4:-45342352 MS.gene062695:CDS
TAAGAAGTCGTAGCCAACAC+CGG 0.589439 6.4:+45341246 None:intergenic
AAGAAGTCGTAGCCAACACC+GGG 0.590372 6.4:+45341247 None:intergenic
ACCAAAGATTCTGAAGCATA+CGG 0.593001 6.4:+45344429 None:intergenic
ATTGGGTTGCAATTGACTCA+AGG 0.594526 6.4:+45342826 None:intergenic
AACACATCAACAATATCAAG+TGG 0.595383 6.4:-45341273 MS.gene062695:CDS
TCTTCATAAACATCCAAGAG+TGG 0.597368 6.4:+45341975 None:intergenic
GACAACTACACACATTCTGA+AGG 0.603730 6.4:-45340621 MS.gene062695:CDS
TTTCCACCCTAGCGTTTGGG+GGG 0.604138 6.4:-45344463 MS.gene062695:CDS
TAATGAAATTCTACTTACGT+TGG 0.604203 6.4:-45342688 MS.gene062695:CDS
AACCAATTCAAGGACAAGCA+AGG 0.604565 6.4:-45342969 MS.gene062695:CDS
CTTTATATATAGGTGGTGGA+AGG 0.614852 6.4:-45342518 MS.gene062695:intron
ATTTCCACCCTAGCGTTTGG+GGG 0.619288 6.4:-45344464 MS.gene062695:CDS
AAACCTCAATAAAACGCGAA+AGG 0.623927 6.4:+45340658 None:intergenic
TGCTTGGAAAGATATAAATG+AGG 0.630445 6.4:-45340733 MS.gene062695:CDS
ACCATGAATCATCATATGTG+AGG 0.641340 6.4:+45342890 None:intergenic
AATTGATAAACTAAAAGAGG+AGG 0.642973 6.4:-45343878 MS.gene062695:CDS
ATAGTTAACATTCAACCACC+TGG 0.654774 6.4:+45341320 None:intergenic
GGATGAAATTGTGTCTAGCG+AGG 0.663791 6.4:-45341127 MS.gene062695:intron
AGTCCAAGCTTACATGAGTG+AGG 0.665674 6.4:-45341343 MS.gene062695:CDS
CTTACATGAGTGAGGCCAGG+TGG 0.678940 6.4:-45341335 MS.gene062695:CDS
TAACTATATACCAACAACAG+AGG 0.706002 6.4:-45341304 MS.gene062695:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAAATATATATATTACA+AGG + chr6.4:45341061-45341080 None:intergenic 10.0%
!!! AATTTAATTTTAAATTAAGG+AGG + chr6.4:45342512-45342531 None:intergenic 10.0%
!!! ATTTAATTTTAAATTAAGGA+GGG + chr6.4:45342511-45342530 None:intergenic 10.0%
!!! TTATAATGAAAATGAATTTT+AGG - chr6.4:45343042-45343061 MS.gene062695:intron 10.0%
!!! TTTTATCATATATTTATACA+CGG - chr6.4:45342985-45343004 MS.gene062695:intron 10.0%
!! AATATAATAAGATGACATAA+TGG - chr6.4:45344140-45344159 MS.gene062695:intron 15.0%
!! AATATAGTAGAATTGTTAAT+AGG + chr6.4:45343705-45343724 None:intergenic 15.0%
!! ATTATATTTGTGATATCATT+AGG - chr6.4:45341902-45341921 MS.gene062695:intron 15.0%
!! CATATTTACAAAAAATACAT+AGG - chr6.4:45343664-45343683 MS.gene062695:CDS 15.0%
!! GAATCATTAATATAAATAAG+TGG + chr6.4:45341485-45341504 None:intergenic 15.0%
!! TATTATATTAACTCTTAAGA+CGG + chr6.4:45344129-45344148 None:intergenic 15.0%
!! TTCACGTAAAAAAAAAAAAA+GGG + chr6.4:45340703-45340722 None:intergenic 15.0%
!!! AATTTTTTAACTTTGATCAT+GGG - chr6.4:45341623-45341642 MS.gene062695:intron 15.0%
!!! ATTAAATAATAACTTTTAGG+TGG - chr6.4:45342921-45342940 MS.gene062695:CDS 15.0%
!!! TAATATAAACCTCTAAAAAA+TGG - chr6.4:45341653-45341672 MS.gene062695:intron 15.0%
!!! TAATTTTTTAACTTTGATCA+TGG - chr6.4:45341622-45341641 MS.gene062695:intron 15.0%
!!! TATTTTTGGTCTTTATATAT+AGG - chr6.4:45342566-45342585 MS.gene062695:intron 15.0%
!!! TGATTGTTTTTACATAAAAT+AGG - chr6.4:45341790-45341809 MS.gene062695:intron 15.0%
!!! TGTTATCAGAATAAAATTTT+AGG - chr6.4:45343294-45343313 MS.gene062695:intron 15.0%
!! AATTAAGATAATGTATAGTG+TGG + chr6.4:45341986-45342005 None:intergenic 20.0%
!! ATAAAGACCAAAAATATCAT+AGG + chr6.4:45342562-45342581 None:intergenic 20.0%
!! GGAATTTGATATAAATATTG+CGG - chr6.4:45341189-45341208 MS.gene062695:CDS 20.0%
!! GTTCACGTAAAAAAAAAAAA+AGG + chr6.4:45340704-45340723 None:intergenic 20.0%
!! TATGTTATGAAAAGTGATTA+AGG - chr6.4:45340762-45340781 MS.gene062695:CDS 20.0%
!!! AATGAAAATGAATTTTAGGT+GGG - chr6.4:45343046-45343065 MS.gene062695:intron 20.0%
!!! ACACTTAATTGTTATTTGAA+AGG + chr6.4:45341121-45341140 None:intergenic 20.0%
!!! ATAATTGCCTATGATATTTT+TGG - chr6.4:45342552-45342571 MS.gene062695:intron 20.0%
!!! ATACTTAAACCATTTTTTAG+AGG + chr6.4:45341665-45341684 None:intergenic 20.0%
!!! ATTGTTCATTTTTGTAAACA+AGG - chr6.4:45344056-45344075 MS.gene062695:intron 20.0%
!!! ATTTTTTAACTTTGATCATG+GGG - chr6.4:45341624-45341643 MS.gene062695:intron 20.0%
!!! GTTTTTCTATCTCTAAATTT+TGG + chr6.4:45342857-45342876 None:intergenic 20.0%
!!! TAATGAAAATGAATTTTAGG+TGG - chr6.4:45343045-45343064 MS.gene062695:intron 20.0%
!!! TGTTTTTACATAAAATAGGA+AGG - chr6.4:45341794-45341813 MS.gene062695:intron 20.0%
!!! TTGTGATTAGAACATTTTTA+GGG - chr6.4:45343370-45343389 MS.gene062695:intron 20.0%
!!! TTTTGTTGAACTATTATCTA+CGG + chr6.4:45343624-45343643 None:intergenic 20.0%
! AAAAGAAAATTGACAATGCT+TGG - chr6.4:45344345-45344364 MS.gene062695:intron 25.0%
! AATTGATAAACTAAAAGAGG+AGG - chr6.4:45341216-45341235 MS.gene062695:CDS 25.0%
! ACGTAAGTAGAATTTCATTA+TGG + chr6.4:45342406-45342425 None:intergenic 25.0%
! ATACTTGGAATGTTATATGA+GGG - chr6.4:45344283-45344302 MS.gene062695:intron 25.0%
! ATATAAATGAGGAATGTCTT+AGG - chr6.4:45344372-45344391 MS.gene062695:intron 25.0%
! ATTTCACACAATATTCTTTG+TGG - chr6.4:45344013-45344032 MS.gene062695:intron 25.0%
! CACAAATGATATCTTCAATT+GGG - chr6.4:45343892-45343911 MS.gene062695:CDS 25.0%
! CGTAAGTAGAATTTCATTAT+GGG + chr6.4:45342405-45342424 None:intergenic 25.0%
! CGTTGTTACTAAAAATGTAA+AGG + chr6.4:45341691-45341710 None:intergenic 25.0%
! GAATAAAACCAAGAGAAAAT+AGG - chr6.4:45340822-45340841 MS.gene062695:CDS 25.0%
! GATCTATGTATGTATCTATA+CGG + chr6.4:45343340-45343359 None:intergenic 25.0%
! GCAAATTGATAAACTAAAAG+AGG - chr6.4:45341213-45341232 MS.gene062695:CDS 25.0%
! GCAATGTTAGTAATATTAAG+TGG + chr6.4:45341005-45341024 None:intergenic 25.0%
! GTCAAAAGATCCTATATTAT+TGG + chr6.4:45341089-45341108 None:intergenic 25.0%
! GTCATCAATGTATGATAAAA+TGG + chr6.4:45342728-45342747 None:intergenic 25.0%
! TAATGAAATTCTACTTACGT+TGG - chr6.4:45342406-45342425 MS.gene062695:CDS 25.0%
! TTAATTATACGATCAAAGTG+TGG + chr6.4:45340978-45340997 None:intergenic 25.0%
! TTATATGAGGGAATATGATA+TGG - chr6.4:45344295-45344314 MS.gene062695:intron 25.0%
! TTCAAGAATGCCAATAATAT+AGG - chr6.4:45341076-45341095 MS.gene062695:intron 25.0%
!! AGACGAAATTAATCAAGTTT+TGG - chr6.4:45341333-45341352 MS.gene062695:CDS 25.0%
!! CTTGTGATTAGAACATTTTT+AGG - chr6.4:45343369-45343388 MS.gene062695:intron 25.0%
!! TGAGTTAGAACTTTTTACTA+AGG - chr6.4:45342774-45342793 MS.gene062695:CDS 25.0%
!! TTTTTACTAAGGCAATTGAA+AGG - chr6.4:45342785-45342804 MS.gene062695:CDS 25.0%
!!! AAGCATTGTCAATTTTCTTT+TGG + chr6.4:45344346-45344365 None:intergenic 25.0%
!!! ATTCTATTTCTGTGCTATTT+AGG - chr6.4:45341413-45341432 MS.gene062695:intron 25.0%
!!! TGTGATTAGAACATTTTTAG+GGG - chr6.4:45343371-45343390 MS.gene062695:intron 25.0%
!!! TTCATGTTTTGATTACATAC+AGG - chr6.4:45341168-45341187 MS.gene062695:CDS 25.0%
!!! TTCTATTTCTGTGCTATTTA+GGG - chr6.4:45341414-45341433 MS.gene062695:intron 25.0%
!!! TTCTTTTAAGAAGTGGTTAA+TGG + chr6.4:45343183-45343202 None:intergenic 25.0%
!!! TTTTGGTCTTTATATATAGG+TGG - chr6.4:45342569-45342588 MS.gene062695:intron 25.0%
AACACATCAACAATATCAAG+TGG - chr6.4:45343821-45343840 MS.gene062695:CDS 30.0%
AACATTGATCATAGATGTTG+AGG - chr6.4:45342160-45342179 MS.gene062695:intron 30.0%
AAGGTTCTTCCTTAATAAGA+TGG + chr6.4:45341948-45341967 None:intergenic 30.0%
AATGGAGAAATAACTCTCAA+AGG - chr6.4:45341382-45341401 MS.gene062695:intron 30.0%
ACATTGATCATAGATGTTGA+GGG - chr6.4:45342161-45342180 MS.gene062695:intron 30.0%
AGATGTATTCAACCAATTCA+AGG - chr6.4:45342115-45342134 MS.gene062695:intron 30.0%
ATAGCACAGAAATAGAATGA+AGG + chr6.4:45341411-45341430 None:intergenic 30.0%
CAAAAAATACATAGGAGTTC+AGG - chr6.4:45343672-45343691 MS.gene062695:CDS 30.0%
CATACTTGGAATGTTATATG+AGG - chr6.4:45344282-45344301 MS.gene062695:intron 30.0%
CCAATTGAAGATATCATTTG+TGG + chr6.4:45343894-45343913 None:intergenic 30.0%
CCACAAATGATATCTTCAAT+TGG - chr6.4:45343891-45343910 MS.gene062695:CDS 30.0%
CTAAAAAACTACCTTATGCA+CGG - chr6.4:45342611-45342630 MS.gene062695:intron 30.0%
GACAAGCAAATCATTAATGT+AGG + chr6.4:45344510-45344529 None:intergenic 30.0%
GATAACATTACACGGATAAT+GGG + chr6.4:45341851-45341870 None:intergenic 30.0%
GCAATGTGTAATATCTATGT+CGG + chr6.4:45340948-45340967 None:intergenic 30.0%
TAAAAAACTACCTTATGCAC+GGG - chr6.4:45342612-45342631 MS.gene062695:intron 30.0%
TAACTATATACCAACAACAG+AGG - chr6.4:45343790-45343809 MS.gene062695:CDS 30.0%
TAAGTGGAGATATAAATACC+AGG + chr6.4:45341469-45341488 None:intergenic 30.0%
TAGAGAAACTTCATGTAATC+CGG + chr6.4:45343095-45343114 None:intergenic 30.0%
TATTTGTGATATCATTAGGC+CGG - chr6.4:45341906-45341925 MS.gene062695:intron 30.0%
TGCTTGGAAAGATATAAATG+AGG - chr6.4:45344361-45344380 MS.gene062695:intron 30.0%
TTGAGTAAAACAAACTTGTG+TGG - chr6.4:45341533-45341552 MS.gene062695:intron 30.0%
! AAACGTAATGGAACTTTAGT+TGG + chr6.4:45344398-45344417 None:intergenic 30.0%
! AGGATTTCCAACATTTTTGA+GGG - chr6.4:45340912-45340931 MS.gene062695:intron 30.0%
! ATTGACTCAATATGTCGTTT+GGG - chr6.4:45341292-45341311 MS.gene062695:CDS 30.0%
! ATTTTAAATTAAGGAGGGTG+TGG + chr6.4:45342506-45342525 None:intergenic 30.0%
! GATTCATGGTGAGAAAATTT+TGG - chr6.4:45342217-45342236 MS.gene062695:intron 30.0%
! GTTGGTTATTTGTTAGCAAT+AGG - chr6.4:45340871-45340890 MS.gene062695:intron 30.0%
! TAGGATTTCCAACATTTTTG+AGG - chr6.4:45340911-45340930 MS.gene062695:intron 30.0%
! TTCCAAATTCCTTTTGATGT+AGG + chr6.4:45342460-45342479 None:intergenic 30.0%
! TTCTAATCACAAGATTTGCT+AGG + chr6.4:45343362-45343381 None:intergenic 30.0%
! TTTCTTTTGGCATTCTTGAA+TGG + chr6.4:45344333-45344352 None:intergenic 30.0%
!! CTCTTACTTCTTTTAAGAAG+TGG + chr6.4:45343190-45343209 None:intergenic 30.0%
!! GGATAATGGGTTGTTTAATA+TGG + chr6.4:45341838-45341857 None:intergenic 30.0%
!!! AATCAAGTTGACTTTTTCCA+AGG + chr6.4:45341275-45341294 None:intergenic 30.0%
!!! AGTAGTAGAATGTTGCTTTT+GGG - chr6.4:45342639-45342658 MS.gene062695:CDS 30.0%
!!! ATCAAGTTGACTTTTTCCAA+GGG + chr6.4:45341274-45341293 None:intergenic 30.0%
AAAATAGGAAGGATCATCGT+AGG - chr6.4:45341805-45341824 MS.gene062695:intron 35.0%
AAACAGTTCGAGCAAAAAAG+AGG - chr6.4:45344248-45344267 MS.gene062695:intron 35.0%
AAACCTCAATAAAACGCGAA+AGG + chr6.4:45344439-45344458 None:intergenic 35.0%
AACAATATCAAGTGGTTACC+CGG - chr6.4:45343829-45343848 MS.gene062695:CDS 35.0%
ACACACGTCAAAAAACGTAA+TGG + chr6.4:45344410-45344429 None:intergenic 35.0%
ACCATGAATCATCATATGTG+AGG + chr6.4:45342207-45342226 None:intergenic 35.0%
ACGACTTCTTACATTGGAAT+GGG - chr6.4:45343860-45343879 MS.gene062695:CDS 35.0%
AGCCTACATCAAAAGGAATT+TGG - chr6.4:45342455-45342474 MS.gene062695:CDS 35.0%
ATAGGGTAGCCATCTTATTA+AGG - chr6.4:45341936-45341955 MS.gene062695:CDS 35.0%
ATAGTTAACATTCAACCACC+TGG + chr6.4:45343777-45343796 None:intergenic 35.0%
ATGATTGTTCAACATTGTCG+TGG - chr6.4:45342074-45342093 MS.gene062695:intron 35.0%
CTAACAAATAACCAACCCTT+TGG + chr6.4:45340867-45340886 None:intergenic 35.0%
GGATAACATTACACGGATAA+TGG + chr6.4:45341852-45341871 None:intergenic 35.0%
GTTTCTCTATAAACCACTCT+TGG - chr6.4:45343106-45343125 MS.gene062695:intron 35.0%
TAATAAGATGGCTACCCTAT+AGG + chr6.4:45341936-45341955 None:intergenic 35.0%
TACGACTTCTTACATTGGAA+TGG - chr6.4:45343859-45343878 MS.gene062695:CDS 35.0%
TAGGTGGGATATTAGTTGTT+TGG - chr6.4:45343061-45343080 MS.gene062695:intron 35.0%
TAGTTGTTTGGATGATCTTC+CGG - chr6.4:45343073-45343092 MS.gene062695:intron 35.0%
TATCCGTGTAATGTTATCCT+CGG - chr6.4:45341853-45341872 MS.gene062695:intron 35.0%
TCTACTTACGTTGGCAAAAT+TGG - chr6.4:45342415-45342434 MS.gene062695:CDS 35.0%
TCTTCATAAACATCCAAGAG+TGG + chr6.4:45343122-45343141 None:intergenic 35.0%
TGGTCTTTATATATAGGTGG+TGG - chr6.4:45342572-45342591 MS.gene062695:intron 35.0%
TTAGCAATAGGAATGAAACC+TGG - chr6.4:45340883-45340902 MS.gene062695:intron 35.0%
TTATACGATCAAAGTGTGGT+TGG + chr6.4:45340974-45340993 None:intergenic 35.0%
TTCCTTGCTTGACAATATTG+AGG + chr6.4:45342685-45342704 None:intergenic 35.0%
TTGTCAAGCAAGGAAAATGA+TGG - chr6.4:45342690-45342709 MS.gene062695:CDS 35.0%
! ATTCCTTTTGATGTAGGCTT+TGG + chr6.4:45342454-45342473 None:intergenic 35.0%
! CACAGGGATTTTGTTCAAAA+TGG - chr6.4:45341364-45341383 MS.gene062695:intron 35.0%
! CATTTTGAACAAAATCCCTG+TGG + chr6.4:45341366-45341385 None:intergenic 35.0%
! GATTGACTCAATATGTCGTT+TGG - chr6.4:45341291-45341310 MS.gene062695:CDS 35.0%
! GCAGCAGCATTAACAATTTT+CGG + chr6.4:45343929-45343948 None:intergenic 35.0%
! TCCTTTTCCCTCAAAAATGT+TGG + chr6.4:45340922-45340941 None:intergenic 35.0%
!! ACCAAAGATTCTGAAGCATA+CGG + chr6.4:45340668-45340687 None:intergenic 35.0%
!! CTTTATATATAGGTGGTGGA+AGG - chr6.4:45342576-45342595 MS.gene062695:intron 35.0%
!! GAAAATTTTGGAAGAGGCAT+TGG - chr6.4:45342229-45342248 MS.gene062695:intron 35.0%
!! GTGGTTCTAGAGTATGAAAA+AGG + chr6.4:45341967-45341986 None:intergenic 35.0%
!! TAGCTCTACCTATTTTCTCT+TGG + chr6.4:45340833-45340852 None:intergenic 35.0%
!! TCCAACATTTTTGAGGGAAA+AGG - chr6.4:45340918-45340937 MS.gene062695:intron 35.0%
!! TGGTGAGAAAATTTTGGAAG+AGG - chr6.4:45342223-45342242 MS.gene062695:intron 35.0%
!!! AAGTTTTGGAAGATATCCAC+AGG - chr6.4:45341347-45341366 MS.gene062695:CDS 35.0%
!!! AGTTTTGGAAGATATCCACA+GGG - chr6.4:45341348-45341367 MS.gene062695:CDS 35.0%
!!! ATGTTGCTTTTGGGTTATGA+CGG - chr6.4:45342648-45342667 MS.gene062695:CDS 35.0%
!!! GAGTAGTAGAATGTTGCTTT+TGG - chr6.4:45342638-45342657 MS.gene062695:CDS 35.0%
AACCAATTCAAGGACAAGCA+AGG - chr6.4:45342125-45342144 MS.gene062695:intron 40.0%
ACTAACATTGCACACTCCAA+AGG - chr6.4:45341014-45341033 MS.gene062695:intron 40.0%
AGCCTCAATATTGTCAAGCA+AGG - chr6.4:45342680-45342699 MS.gene062695:CDS 40.0%
AGCTATAGCAAACACTCCAA+AGG - chr6.4:45340848-45340867 MS.gene062695:intron 40.0%
CTAACATTGCACACTCCAAA+GGG - chr6.4:45341015-45341034 MS.gene062695:intron 40.0%
CTCAAAAACAGAGAAACCCT+TGG - chr6.4:45341255-45341274 MS.gene062695:CDS 40.0%
GAACCGAGGATAACATTACA+CGG + chr6.4:45341859-45341878 None:intergenic 40.0%
GACAACTACACACATTCTGA+AGG - chr6.4:45344473-45344492 MS.gene062695:CDS 40.0%
GAGCAAGAAGTGAAGAAAGA+AGG - chr6.4:45343146-45343165 MS.gene062695:intron 40.0%
GATGACACGTATGATGCATA+CGG - chr6.4:45342742-45342761 MS.gene062695:CDS 40.0%
GCCTCACATATGATGATTCA+TGG - chr6.4:45342203-45342222 MS.gene062695:intron 40.0%
GCGAATAATGTAAAGAACCG+AGG + chr6.4:45341873-45341892 None:intergenic 40.0%
GCTATAGCAAACACTCCAAA+GGG - chr6.4:45340849-45340868 MS.gene062695:intron 40.0%
GGATGAATCTTGCTCATAGA+TGG + chr6.4:45342384-45342403 None:intergenic 40.0%
GTATGTATCTATACGGAGAG+TGG + chr6.4:45343333-45343352 None:intergenic 40.0%
GTGAGTAACTTGAATCCCTT+TGG + chr6.4:45341033-45341052 None:intergenic 40.0%
GTTGGAAATCCTAAAACACC+AGG + chr6.4:45340904-45340923 None:intergenic 40.0%
TCCGTATGCTTCAGAATCTT+TGG - chr6.4:45340664-45340683 MS.gene062695:CDS 40.0%
TTCATGTACTCCTCTGTTGT+TGG + chr6.4:45343803-45343822 None:intergenic 40.0%
TTCCTTGCTTGTCCTTGAAT+TGG + chr6.4:45342130-45342149 None:intergenic 40.0%
TTGGCTACGACTTCTTACAT+TGG - chr6.4:45343854-45343873 MS.gene062695:CDS 40.0%
! AGGACATGTTGCTTCATACT+TGG - chr6.4:45344268-45344287 MS.gene062695:intron 40.0%
! ATTAGGCCGGTTTACCTATA+GGG - chr6.4:45341919-45341938 MS.gene062695:CDS 40.0%
! ATTGGGTTGCAATTGACTCA+AGG + chr6.4:45342271-45342290 None:intergenic 40.0%
! GGAATGAAACCTGGTGTTTT+AGG - chr6.4:45340892-45340911 MS.gene062695:intron 40.0%
!! CAACCTTTCGCGTTTTATTG+AGG - chr6.4:45344433-45344452 MS.gene062695:CDS 40.0%
AGATTTCCACCCTAGCGTTT+GGG - chr6.4:45340628-45340647 MS.gene062695:CDS 45.0%
AGGAAGGATCATCGTAGGAT+CGG - chr6.4:45341810-45341829 MS.gene062695:intron 45.0%
AGTCCAAGCTTACATGAGTG+AGG - chr6.4:45343751-45343770 MS.gene062695:CDS 45.0%
CAAAAACTTGCCTAGGCTAG+AGG - chr6.4:45342343-45342362 MS.gene062695:CDS 45.0%
CATGGTCTTTACGTTTCACC+TGG - chr6.4:45341448-45341467 MS.gene062695:intron 45.0%
CGCAAGAGAAGGACTCAATT+GGG + chr6.4:45342288-45342307 None:intergenic 45.0%
CTTGCGACACAAGTCAAACA+TGG - chr6.4:45342302-45342321 MS.gene062695:intron 45.0%
GCTCCAAAGCCTACATCAAA+AGG - chr6.4:45342448-45342467 MS.gene062695:CDS 45.0%
GGATGAAATTGTGTCTAGCG+AGG - chr6.4:45343967-45343986 MS.gene062695:intron 45.0%
TAAGAAGTCGTAGCCAACAC+CGG + chr6.4:45343851-45343870 None:intergenic 45.0%
TAGCAAACACTCCAAAGGGT+TGG - chr6.4:45340853-45340872 MS.gene062695:intron 45.0%
TCGCAAGAGAAGGACTCAAT+TGG + chr6.4:45342289-45342308 None:intergenic 45.0%
TGCTGTTCATTGCAGGCTTA+GGG - chr6.4:45343946-45343965 MS.gene062695:intron 45.0%
TGGCTACCCTATAGGTAAAC+CGG + chr6.4:45341928-45341947 None:intergenic 45.0%
! CATTAGGCCGGTTTACCTAT+AGG - chr6.4:45341918-45341937 MS.gene062695:CDS 45.0%
!! ATATAGGTGGTGGAAGGAGT+TGG - chr6.4:45342582-45342601 MS.gene062695:intron 45.0%
!! CTGTGCTATTTAGGGTGTTG+AGG - chr6.4:45341422-45341441 MS.gene062695:intron 45.0%
!! TTGACTTGTGTCGCAAGAGA+AGG + chr6.4:45342299-45342318 None:intergenic 45.0%
!! TTTAGGGTGTTGAGGCAACA+TGG - chr6.4:45341430-45341449 MS.gene062695:intron 45.0%
!!! GAGGCATTGGCTTTTACTTC+TGG - chr6.4:45342242-45342261 MS.gene062695:intron 45.0%
!! TTTAAAAAAAGATTATATAT+TGG - chr6.4:45343586-45343605 MS.gene062695:intron 5.0%
!!! AAAATTAAATAATAACTTTT+AGG - chr6.4:45342918-45342937 MS.gene062695:CDS 5.0%
!!! TCATTTTTTATATTTTAATT+TGG - chr6.4:45341503-45341522 MS.gene062695:intron 5.0%
!!! TTCAATTTAATTTTAAATTA+AGG + chr6.4:45342515-45342534 None:intergenic 5.0%
AAGAAGTCGTAGCCAACACC+GGG + chr6.4:45343850-45343869 None:intergenic 50.0%
AAGCTTACATGAGTGAGGCC+AGG - chr6.4:45343756-45343775 MS.gene062695:CDS 50.0%
ACTACTCTGTCCCGTGCATA+AGG + chr6.4:45342625-45342644 None:intergenic 50.0%
ATCAAGTGGTTACCCGGTGT+TGG - chr6.4:45343835-45343854 MS.gene062695:CDS 50.0%
ATGCTGCTGCTGTTCATTGC+AGG - chr6.4:45343939-45343958 MS.gene062695:intron 50.0%
ATTTCCACCCTAGCGTTTGG+GGG - chr6.4:45340630-45340649 MS.gene062695:CDS 50.0%
CAGATTTCCACCCTAGCGTT+TGG - chr6.4:45340627-45340646 MS.gene062695:CDS 50.0%
CTCTGCGCAAAAACTTGCCT+AGG - chr6.4:45342336-45342355 MS.gene062695:CDS 50.0%
CTGCTGTTCATTGCAGGCTT+AGG - chr6.4:45343945-45343964 MS.gene062695:intron 50.0%
GATTTCCACCCTAGCGTTTG+GGG - chr6.4:45340629-45340648 MS.gene062695:CDS 50.0%
TAGCTTCTTGCCTCTAGCCT+AGG + chr6.4:45342356-45342375 None:intergenic 50.0%
TGGCCTCACTCATGTAAGCT+TGG + chr6.4:45343757-45343776 None:intergenic 50.0%
! CTAGGCAAGTTTTTGCGCAG+AGG + chr6.4:45342338-45342357 None:intergenic 50.0%
AAGAAGTCCCCCCAAACGCT+AGG + chr6.4:45340641-45340660 None:intergenic 55.0%
AGAAGTCCCCCCAAACGCTA+GGG + chr6.4:45340640-45340659 None:intergenic 55.0%
CTTACATGAGTGAGGCCAGG+TGG - chr6.4:45343759-45343778 MS.gene062695:CDS 55.0%
TTTCCACCCTAGCGTTTGGG+GGG - chr6.4:45340631-45340650 MS.gene062695:CDS 55.0%
AGTCCCCCCAAACGCTAGGG+TGG + chr6.4:45340637-45340656 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 45340569 45344547 45340569 ID=MS.gene062695
chr6.4 mRNA 45340569 45344547 45340569 ID=MS.gene062695.t1;Parent=MS.gene062695
chr6.4 exon 45344431 45344547 45344431 ID=MS.gene062695.t1.exon1;Parent=MS.gene062695.t1
chr6.4 CDS 45344431 45344547 45344431 ID=cds.MS.gene062695.t1;Parent=MS.gene062695.t1
chr6.4 exon 45343647 45343926 45343647 ID=MS.gene062695.t1.exon2;Parent=MS.gene062695.t1
chr6.4 CDS 45343647 45343926 45343647 ID=cds.MS.gene062695.t1;Parent=MS.gene062695.t1
chr6.4 exon 45342627 45342999 45342627 ID=MS.gene062695.t1.exon3;Parent=MS.gene062695.t1
chr6.4 CDS 45342627 45342999 45342627 ID=cds.MS.gene062695.t1;Parent=MS.gene062695.t1
chr6.4 exon 45342310 45342528 45342310 ID=MS.gene062695.t1.exon4;Parent=MS.gene062695.t1
chr6.4 CDS 45342310 45342528 45342310 ID=cds.MS.gene062695.t1;Parent=MS.gene062695.t1
chr6.4 exon 45341914 45342052 45341914 ID=MS.gene062695.t1.exon5;Parent=MS.gene062695.t1
chr6.4 CDS 45341914 45342052 45341914 ID=cds.MS.gene062695.t1;Parent=MS.gene062695.t1
chr6.4 exon 45341128 45341376 45341128 ID=MS.gene062695.t1.exon6;Parent=MS.gene062695.t1
chr6.4 CDS 45341128 45341376 45341128 ID=cds.MS.gene062695.t1;Parent=MS.gene062695.t1
chr6.4 exon 45340569 45340862 45340569 ID=MS.gene062695.t1.exon7;Parent=MS.gene062695.t1
chr6.4 CDS 45340569 45340862 45340569 ID=cds.MS.gene062695.t1;Parent=MS.gene062695.t1
Gene Sequence

>MS.gene062695

ATGTCTGCAGTAGCTAGCTTCAATCATAACGAGAAATCAGTTTTGCAAAGAAATGTTGCAGATTTCCACCCTAGCGTTTGGGGGGACTTCTTCATTCCGTATGCTTCAGAATCTTTGGTACGTATAGAATGCCCTTTTTTTTTTTTTACGTGAACAACAATGATTTTTTTTTTAAAGATCAACAACAATGATATATGTTATGAAAAGTGATTAAGGAGTTCTAGAAACACTATCTTTCTCATATTTCACTCTAGAATAAAACCAAGAGAAAATAGGTAGAGCTATAGCAAACACTCCAAAGGGTTGGTTATTTGTTAGCAATAGGAATGAAACCTGGTGTTTTAGGATTTCCAACATTTTTGAGGGAAAAGGATTTCCGACATAGATATTACACATTGCACACCAACCACACTTTGATCGTATAATTAATAAACCACTTAATATTACTAACATTGCACACTCCAAAGGGATTCAAGTTACTCACATTTACCTTGTAATATATATATTTTCAAGAATGCCAATAATATAGGATCTTTTGACTAAATGCATCCTTTCAAATAACAATTAAGTGTCATTTATCAATTAATTTTAAAATCATATTCATGTTTTGATTACATACAGGAATTTGATATAAATATTGCGGCGCAAATTGATAAACTAAAAGAGGAGGTTAGACAAATGCTTGTCTCAAAAACAGAGAAACCCTTGGAAAAAGTCAACTTGATTGACTCAATATGTCGTTTGGGTGTGAGCTATTATTTTGAAGACGAAATTAATCAAGTTTTGGAAGATATCCACAGGGATTTTGTTCAAAATGGAGAAATAACTCTCAAAGGCAACCTTCATTCTATTTCTGTGCTATTTAGGGTGTTGAGGCAACATGGTCTTTACGTTTCACCTGGTATTTATATCTCCACTTATTTATATTAATGATTCATTTTTTATATTTTAATTTGGATCACTATTGAGTAAAACAAACTTGTGTGGTAGTTTTTAGTTTTTTTTTTTTTTTTTTAAATTCTAATCGTCAAATTAATACTTTAATTTACAACATAATTTTTTAACTTTGATCATGGGGAGTATCTAATATAAACCTCTAAAAAATGGTTTAAGTATAGACCTTTACATTTTTAGTAACAACGAGAGTTTTATAATACTAAAAATTAAAGAATAACATAAGTATTTAACTTTTTCTTGCATTAAAAAAAAAAAAAAAAAAGATGATTGTTTTTACATAAAATAGGAAGGATCATCGTAGGATCGGATCCATATTAAACAACCCATTATCCGTGTAATGTTATCCTCGGTTCTTTACATTATTCGCTTTTACATAATTATATTTGTGATATCATTAGGCCGGTTTACCTATAGGGTAGCCATCTTATTAAGGAAGAACCTTTTTCATACTCTAGAACCACACTATACATTATCTTAATTGCTTATTGAATTTTTTAATCTTGTTTTAGTTTCTTATTTACGTATACTTATAAATTAAAACATCTCTAATGATTGTTCAACATTGTCGTGGTTTTCTAATAAAAATATTAGATGTATTCAACCAATTCAAGGACAAGCAAGGAAATTTTAGTCAAACATTGATCATAGATGTTGAGGGCATGTTAAACTTGTATGAAGCCTCACATATGATGATTCATGGTGAGAAAATTTTGGAAGAGGCATTGGCTTTTACTTCTGGTCACCTTGAGTCAATTGCAACCCAATTGAGTCCTTCTCTTGCGACACAAGTCAAACATGGCTTAAGACATCCTCTGCGCAAAAACTTGCCTAGGCTAGAGGCAAGAAGCTACATTTCCATCTATGAGCAAGATTCATCCCATAATGAAATTCTACTTACGTTGGCAAAATTGGATTTTAATATGCTCCAAAGCCTACATCAAAAGGAATTTGGAAACATTTGCAAGTAAGCACTATATCCACACCCTCCTTAATTTAAAATTAAATTGAATTCAAAAACTAACTACTATAATTGCCTATGATATTTTTGGTCTTTATATATAGGTGGTGGAAGGAGTTGGACATTGCTAAAAAACTACCTTATGCACGGGACAGAGTAGTAGAATGTTGCTTTTGGGTTATGACGGTATATTTTGAGCCTCAATATTGTCAAGCAAGGAAAATGATGGCAAAAGTAATCTCCATTTTATCATACATTGATGACACGTATGATGCATACGGAACAATTGATGAGTTAGAACTTTTTACTAAGGCAATTGAAAGGTTAGCACATCATATAAACTCAATAGAAAAAATAATCAAATAAGCAACCAAAATTTAGAGATAGAAAAACTTGAAATTTATCTGTATTTAGTATTGAAATTAAGTGATGATAAAATTAAATAATAACTTTTAGGTGGTTGCTAATTCTATTTTTTTTAAAAAATAAAATAGACTTTTTTTTTATCATATATTTATACACGGTCTAATTTTGTCAACAAAAGTGTAACAATTAATATTATAATGAAAATGAATTTTAGGTGGGATATTAGTTGTTTGGATGATCTTCCGGATTACATGAAGTTTCTCTATAAACCACTCTTGGATGTTTATGAAGAAATTGAGCAAGAAGTGAAGAAAGAAGGAAGAGTATATGCCATTAACCACTTCTTAAAAGAAGTAAGAGTTTTATTTTATTGATAAAATTTGTTTCTTTTATTGATTTAATTTATTAAACAAACAAACAAATATTTCATTTTCAATTTTATCTTGTTATCAGAATAAAATTTTAGGATTTAATTTGCATCCACTCTCCGTATAGATACATACATAGATCCTAGCAAATCTTGTGATTAGAACATTTTTAGGGGTTTTGTTGAAATTGACATTATAGAGTATCAACATGATGTTATTTGATTGAAAGTAAATGTTAAACATATTTATACTATCAATGCATAAAAACTAGTTTAAATAACTTTTTATTAGTTGTTTTATGAACTCAATTTGTAGTAATTACTATAAGAAATTTTGTTTTGTCAGAATTAGCTTTTTTGTAATTTTAATTTAAAAAAAGATTATATATTGGCAGTTTAATTAACCGTAGATAATAGTTCAACAAAATTTCGAATACAATTTGACATCATATTTACAAAAAATACATAGGAGTTCAGGTACATAACCTATTAACAATTCTACTATATTTTATAACAATGACAGTTCAAAAATATAGTCCAAGCTTACATGAGTGAGGCCAGGTGGTTGAATGTTAACTATATACCAACAACAGAGGAGTACATGAACACATCAACAATATCAAGTGGTTACCCGGTGTTGGCTACGACTTCTTACATTGGAATGGGAAACATAGCCACAAATGATATCTTCAATTGGGTAACTAGTCATCCGAAAATTGTTAATGCTGCTGCTGTTCATTGCAGGCTTAGGGATGAAATTGTGTCTAGCGAGGTATTTTTTTTATCTAAATATATAATTTCACACAATATTCTTTGTGGCTAATATATAAGAGATAATTATTGTTCATTTTTGTAAACAAGGTTAACACAACTGTCTAATTACAATTTACAAAGTTGATATTTTTGTAACCGTCTTAAGAGTTAATATAATAAGATGACATAATGGTGAAATGTGACTTTTACACTGTAACTGCATAGTCATTAAACTATTGATATATCTATTGTATCTCATAGTGTATATATTTTTTGATAAACAGTTCGAGCAAAAAAGAGGACATGTTGCTTCATACTTGGAATGTTATATGAGGGAATATGATATGGATAGAGAAGCTGCCATTCAAGAATGCCAAAAGAAAATTGACAATGCTTGGAAAGATATAAATGAGGAATGTCTTAGGCCAACTAAAGTTCCATTACGTTTTTTGACGTGTGTTCTCAACCTTTCGCGTTTTATTGAGGTTTTTTACAAAGATGAAGACAACTACACACATTCTGAAGGACTAATGAAGACCTACATTAATGATTTGCTTGTCAATCCCATCCCAACATGA
Protein sequence

>MS.gene062695.t1

MSAVASFNHNEKSVLQRNVADFHPSVWGDFFIPYASESLEFDINIAAQIDKLKEEVRQMLVSKTEKPLEKVNLIDSICRLGVSYYFEDEINQVLEDIHRDFVQNGEITLKGNLHSISVLFRVLRQHGLYVSPDVFNQFKDKQGNFSQTLIIDVEGMLNLYEASHMMIHGEKILEEALAFTSGHLESIATQLSPSLATQVKHGLRHPLRKNLPRLEARSYISIYEQDSSHNEILLTLAKLDFNMLQSLHQKEFGNICKWWKELDIAKKLPYARDRVVECCFWVMTVYFEPQYCQARKMMAKVISILSYIDDTYDAYGTIDELELFTKAIERWDISCLDDLPDYMKFLYKPLLDVYEEIEQEVKKEGRVYAINHFLKEFKNIVQAYMSEARWLNVNYIPTTEEYMNTSTISSGYPVLATTSYIGMGNIATNDIFNWVTSHPKIVNAAAVHCRLRDEIVSSEFEQKRGHVASYLECYMREYDMDREAAIQECQKKIDNAWKDINEECLRPTKVPLRFLTCVLNLSRFIEVFYKDEDNYTHSEGLMKTYINDLLVNPIPT