Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062817.t1 | XP_013464389.2 | 89.5 | 505 | 34 | 1 | 6 | 491 | 1 | 505 | 4.40E-263 | 916.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062817.t1 | Q9FWZ1 | 22.8 | 486 | 276 | 17 | 19 | 462 | 15 | 443 | 1.3e-13 | 79.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062817.t1 | A0A396JBM2 | 89.5 | 505 | 34 | 1 | 6 | 491 | 1 | 505 | 3.2e-263 | 916.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene047136 | MS.gene062817 | PPI |
| MS.gene062817 | MS.gene033695 | PPI |
| MS.gene01653 | MS.gene062817 | PPI |
| MS.gene072000 | MS.gene062817 | PPI |
| MS.gene78164 | MS.gene062817 | PPI |
| MS.gene51793 | MS.gene062817 | PPI |
| MS.gene54960 | MS.gene062817 | PPI |
| MS.gene062817 | MS.gene024262 | PPI |
| MS.gene033694 | MS.gene062817 | PPI |
| MS.gene072003 | MS.gene062817 | PPI |
| MS.gene062817 | MS.gene045772 | PPI |
| MS.gene065373 | MS.gene062817 | PPI |
| MS.gene002112 | MS.gene062817 | PPI |
| MS.gene071257 | MS.gene062817 | PPI |
| MS.gene062817 | MS.gene51795 | PPI |
| MS.gene047137 | MS.gene062817 | PPI |
| MS.gene54959 | MS.gene062817 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062817.t1 | MTR_2g070780 | 87.097 | 341 | 25 | 1 | 6 | 327 | 1 | 341 | 0.0 | 593 |
| MS.gene062817.t1 | MTR_6g034190 | 55.962 | 520 | 186 | 5 | 6 | 491 | 1 | 511 | 0.0 | 550 |
| MS.gene062817.t1 | MTR_2g072240 | 48.733 | 513 | 171 | 9 | 6 | 491 | 1 | 448 | 1.57e-151 | 440 |
| MS.gene062817.t1 | MTR_2g071700 | 67.160 | 338 | 88 | 3 | 6 | 320 | 1 | 338 | 4.90e-144 | 417 |
| MS.gene062817.t1 | MTR_2g071720 | 78.453 | 181 | 23 | 1 | 327 | 491 | 1 | 181 | 1.71e-97 | 291 |
| MS.gene062817.t1 | MTR_2g070820 | 89.189 | 111 | 12 | 0 | 261 | 371 | 1 | 111 | 8.63e-64 | 203 |
| MS.gene062817.t1 | MTR_2g070660 | 54.822 | 197 | 55 | 3 | 6 | 198 | 1 | 167 | 1.12e-56 | 186 |
| MS.gene062817.t1 | MTR_2g070810 | 91.489 | 47 | 4 | 0 | 6 | 52 | 49 | 95 | 8.73e-22 | 90.1 |
| MS.gene062817.t1 | MTR_2g047858 | 23.788 | 433 | 277 | 13 | 18 | 438 | 111 | 502 | 1.57e-14 | 76.3 |
| MS.gene062817.t1 | MTR_8g468470 | 24.664 | 446 | 281 | 19 | 21 | 438 | 13 | 431 | 2.81e-11 | 65.9 |
| MS.gene062817.t1 | MTR_1g016310 | 28.137 | 263 | 155 | 9 | 16 | 268 | 14 | 252 | 5.09e-11 | 65.1 |
| MS.gene062817.t1 | MTR_1g016310 | 28.137 | 263 | 155 | 9 | 16 | 268 | 14 | 252 | 6.64e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062817.t1 | AT1G80960 | 29.123 | 285 | 161 | 10 | 22 | 289 | 11 | 271 | 1.84e-18 | 88.2 |
| MS.gene062817.t1 | AT1G80960 | 29.123 | 285 | 161 | 10 | 22 | 289 | 50 | 310 | 2.62e-18 | 87.8 |
| MS.gene062817.t1 | AT1G80960 | 29.123 | 285 | 161 | 10 | 22 | 289 | 50 | 310 | 2.62e-18 | 87.8 |
| MS.gene062817.t1 | AT1G80960 | 29.123 | 285 | 161 | 10 | 22 | 289 | 50 | 310 | 2.62e-18 | 87.8 |
| MS.gene062817.t1 | AT1G80960 | 29.492 | 295 | 164 | 11 | 22 | 299 | 50 | 317 | 2.67e-18 | 87.4 |
| MS.gene062817.t1 | AT1G80960 | 29.123 | 285 | 161 | 10 | 22 | 289 | 50 | 310 | 2.72e-18 | 87.8 |
| MS.gene062817.t1 | AT3G59190 | 24.023 | 512 | 294 | 25 | 21 | 469 | 11 | 490 | 4.94e-14 | 74.7 |
| MS.gene062817.t1 | AT3G58860 | 23.776 | 429 | 272 | 12 | 19 | 427 | 4 | 397 | 4.83e-13 | 71.6 |
| MS.gene062817.t1 | AT3G59190 | 24.935 | 385 | 221 | 17 | 21 | 365 | 11 | 367 | 2.17e-11 | 65.9 |
| MS.gene062817.t1 | AT1G67390 | 25.430 | 291 | 178 | 9 | 7 | 283 | 27 | 292 | 9.68e-11 | 64.3 |
Find 103 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAATCTTAATATATTTA+AGG | 0.083479 | 2.4:+24604529 | None:intergenic |
| GTTAAGTACTTAATATTAAA+TGG | 0.208632 | 2.4:-24603070 | MS.gene062817:CDS |
| CCTCACCCTCTAGGTCAATT+TGG | 0.227733 | 2.4:-24603239 | MS.gene062817:intron |
| CAAAATGTCTGAAGAAATAA+TGG | 0.265099 | 2.4:-24605651 | None:intergenic |
| TGTGAACGAGCGTAGGATTT+TGG | 0.266869 | 2.4:-24604505 | MS.gene062817:CDS |
| CCTAAAGAATGTTTGTATAA+AGG | 0.274042 | 2.4:-24603125 | MS.gene062817:CDS |
| CCTTTATACAAACATTCTTT+AGG | 0.276237 | 2.4:+24603125 | None:intergenic |
| TGAAATTTGTGGTGGCATTT+TGG | 0.276341 | 2.4:-24604310 | MS.gene062817:intron |
| TCAGATCAATGGATAATTTC+GGG | 0.278682 | 2.4:+24602951 | None:intergenic |
| TTCAGATCAATGGATAATTT+CGG | 0.284966 | 2.4:+24602950 | None:intergenic |
| CTTACCCCGGAGGTTTGTTT+TGG | 0.286540 | 2.4:-24603183 | MS.gene062817:CDS |
| TTATAAATAATATTACAATT+TGG | 0.289042 | 2.4:-24603042 | MS.gene062817:CDS |
| GCACGTAGAACCCGAAGTTT+TGG | 0.308366 | 2.4:+24604408 | None:intergenic |
| CTAAAGAATGTTTGTATAAA+GGG | 0.314320 | 2.4:-24603124 | MS.gene062817:CDS |
| TTTGTCTTTGGTCAAAATTA+AGG | 0.326399 | 2.4:+24605459 | None:intergenic |
| ACGACTTTAACATTTGTCTT+TGG | 0.326707 | 2.4:+24605447 | None:intergenic |
| TGAATCTTCAAATAAATAAC+CGG | 0.337383 | 2.4:-24603390 | MS.gene062817:CDS |
| ATAGAGTATATAAGAAAATA+TGG | 0.344916 | 2.4:-24602920 | MS.gene062817:CDS |
| TACAATAATGTTCAAATGCT+TGG | 0.353231 | 2.4:-24604384 | MS.gene062817:CDS |
| AACTTCTACCTTGCAGTGAC+TGG | 0.364847 | 2.4:-24605392 | MS.gene062817:CDS |
| CTTAGAGGCCCCAAAACTTC+GGG | 0.365917 | 2.4:-24604418 | MS.gene062817:CDS |
| TTGTGCAAGTGGGGATGTTG+TGG | 0.396215 | 2.4:-24604905 | MS.gene062817:CDS |
| ATCTTAATATATTTAAGGCT+TGG | 0.397703 | 2.4:+24604534 | None:intergenic |
| AGGGATATTATTGAAATTTG+TGG | 0.398913 | 2.4:-24604321 | MS.gene062817:CDS |
| TGTGCAAGTGGGGATGTTGT+GGG | 0.402090 | 2.4:-24604904 | MS.gene062817:CDS |
| CAACTCAAGAACCTTAAAAC+TGG | 0.403099 | 2.4:+24604741 | None:intergenic |
| TTATTTGAAGATTCATTAGT+TGG | 0.403722 | 2.4:+24603398 | None:intergenic |
| TCATGAAGATCTGATCTTAG+AGG | 0.415542 | 2.4:-24604433 | MS.gene062817:CDS |
| TATTTGAAGATTCATTAGTT+GGG | 0.418765 | 2.4:+24603399 | None:intergenic |
| TCAAATATTGACAATCATAT+TGG | 0.420752 | 2.4:-24604967 | MS.gene062817:CDS |
| GTTCTCGCGACTTCCGTGTA+AGG | 0.425313 | 2.4:+24605530 | None:intergenic |
| TACAAACATTCTTTAGGTTG+TGG | 0.433648 | 2.4:+24603131 | None:intergenic |
| GGGATGTTGTGGGGTGGATG+AGG | 0.442773 | 2.4:-24604894 | MS.gene062817:CDS |
| TTTCAGCCAAAACAAACCTC+CGG | 0.449764 | 2.4:+24603177 | None:intergenic |
| CCACAATGATTCACATCGCT+TGG | 0.458316 | 2.4:+24605496 | None:intergenic |
| TATCCCAGGTTTCAGATCAA+TGG | 0.467659 | 2.4:+24602940 | None:intergenic |
| TCTAATGCTACAACTCTTCA+AGG | 0.468328 | 2.4:+24604942 | None:intergenic |
| TCCCCACTTGCACAACTCTC+AGG | 0.473005 | 2.4:+24604913 | None:intergenic |
| CAAAACAAACCTCCGGGGTA+AGG | 0.473251 | 2.4:+24603184 | None:intergenic |
| TGCAAGGTAGAAGTTTAGTC+TGG | 0.473542 | 2.4:+24605400 | None:intergenic |
| GCATTCCTTTCAATCAAGTC+TGG | 0.476075 | 2.4:+24604799 | None:intergenic |
| TTATCCATTGATCTGAAACC+TGG | 0.478986 | 2.4:-24602944 | MS.gene062817:CDS |
| AGGGACACAAATCAAAGTTA+TGG | 0.481343 | 2.4:-24605618 | MS.gene062817:CDS |
| TTCAGCCAAAACAAACCTCC+GGG | 0.483549 | 2.4:+24603178 | None:intergenic |
| CATTTCTCCACTTCCTTACA+CGG | 0.495992 | 2.4:-24605543 | MS.gene062817:CDS |
| GATTCATGTGATTATCGTTA+CGG | 0.496220 | 2.4:-24604829 | MS.gene062817:CDS |
| GTGCAAGTGGGGATGTTGTG+GGG | 0.497345 | 2.4:-24604903 | MS.gene062817:CDS |
| TCTTAGAGGCCCCAAAACTT+CGG | 0.498004 | 2.4:-24604419 | MS.gene062817:CDS |
| GCGACTTCCGTGTAAGGAAG+TGG | 0.499175 | 2.4:+24605536 | None:intergenic |
| AAACTGGAGAAAACCTCAAA+AGG | 0.499879 | 2.4:+24604757 | None:intergenic |
| ATCTTCATGATTACAAATAA+CGG | 0.505209 | 2.4:+24604446 | None:intergenic |
| TCAATTCAAAATCGAGGCAA+AGG | 0.505524 | 2.4:+24603470 | None:intergenic |
| ATATAAGCTAGAAGTGCATA+AGG | 0.505955 | 2.4:+24605566 | None:intergenic |
| CAAGTGGGGATGTTGTGGGG+TGG | 0.508240 | 2.4:-24604900 | MS.gene062817:CDS |
| GAAATAATGGGTGAAGGAGA+AGG | 0.509757 | 2.4:-24605638 | MS.gene062817:CDS |
| CTTTGGTCAAAATTAAGGCT+AGG | 0.519973 | 2.4:+24605464 | None:intergenic |
| AACCTCAAAAGGTAAATCAA+TGG | 0.528655 | 2.4:+24604768 | None:intergenic |
| AAAATGTCTGAAGAAATAAT+GGG | 0.529206 | 2.4:-24605650 | MS.gene062817:CDS |
| TTACGAAATCACATTTCTCA+AGG | 0.534571 | 2.4:+24604580 | None:intergenic |
| TTTCTTATATACTCTATCCC+AGG | 0.537281 | 2.4:+24602926 | None:intergenic |
| TATCCATTGATCTGAAACCT+GGG | 0.540917 | 2.4:-24602943 | MS.gene062817:CDS |
| ATTTGAAGATTCATTAGTTG+GGG | 0.541423 | 2.4:+24603400 | None:intergenic |
| TACCATTCAATTCAAAATCG+AGG | 0.544045 | 2.4:+24603464 | None:intergenic |
| AAATAATGGGTGAAGGAGAA+GGG | 0.545422 | 2.4:-24605637 | MS.gene062817:CDS |
| TGCAGTGACTGGGCAACGTA+AGG | 0.547546 | 2.4:-24605381 | MS.gene062817:intron |
| GATATTATTGAAATTTGTGG+TGG | 0.564526 | 2.4:-24604318 | MS.gene062817:CDS |
| CAATTCAAAATCGAGGCAAA+GGG | 0.566625 | 2.4:+24603471 | None:intergenic |
| ACTTCTACCTTGCAGTGACT+GGG | 0.567012 | 2.4:-24605391 | MS.gene062817:CDS |
| GTTTGTATAAAGGGATACAA+AGG | 0.571149 | 2.4:-24603115 | MS.gene062817:CDS |
| GAATACCAGACTTGATTGAA+AGG | 0.580687 | 2.4:-24604804 | MS.gene062817:CDS |
| CCAAGCGATGTGAATCATTG+TGG | 0.582416 | 2.4:-24605496 | MS.gene062817:CDS |
| TTTGGTTTCTGCATTTAACA+TGG | 0.582670 | 2.4:-24604487 | MS.gene062817:CDS |
| TCTGAAGAAATAATGGGTGA+AGG | 0.588283 | 2.4:-24605644 | MS.gene062817:CDS |
| GGTCATCGAGGTTCTAGCAT+GGG | 0.596942 | 2.4:-24603517 | MS.gene062817:CDS |
| GACACAAATCAAAGTTATGG+AGG | 0.600709 | 2.4:-24605615 | MS.gene062817:CDS |
| TGGTGGTAGCTTTGATGAGT+GGG | 0.600866 | 2.4:-24602900 | MS.gene062817:CDS |
| TTTGTGATGTGAACGAGCGT+AGG | 0.601006 | 2.4:-24604512 | MS.gene062817:CDS |
| AATATTTGATGTAATCATCA+TGG | 0.606995 | 2.4:+24604981 | None:intergenic |
| TACGTTGCCCAGTCACTGCA+AGG | 0.609512 | 2.4:+24605384 | None:intergenic |
| ATGTGATTTCGTAACAGATG+AGG | 0.611173 | 2.4:-24604571 | MS.gene062817:CDS |
| GAGTGCAAAAGAAAGAGCTA+TGG | 0.611287 | 2.4:+24603432 | None:intergenic |
| AAGTACTTAATATTAAATGG+AGG | 0.612207 | 2.4:-24603067 | MS.gene062817:CDS |
| CAGATCAATGGATAATTTCG+GGG | 0.612401 | 2.4:+24602952 | None:intergenic |
| TGTATAAAGGGATACAAAGG+TGG | 0.615243 | 2.4:-24603112 | MS.gene062817:CDS |
| GAATCTTCAAATAAATAACC+GGG | 0.615702 | 2.4:-24603389 | MS.gene062817:intron |
| TTGTGGCTGACACACCTACA+CGG | 0.616160 | 2.4:+24603148 | None:intergenic |
| TGCCTGAGAGTTGTGCAAGT+GGG | 0.620485 | 2.4:-24604915 | MS.gene062817:CDS |
| GCCTGAGAGTTGTGCAAGTG+GGG | 0.621594 | 2.4:-24604914 | MS.gene062817:CDS |
| ACAGGTAGATCTTGAAAGTG+AGG | 0.625502 | 2.4:-24605022 | MS.gene062817:intron |
| GGGTCATCGAGGTTCTAGCA+TGG | 0.629061 | 2.4:-24603518 | MS.gene062817:CDS |
| TGTGGCTGACACACCTACAC+GGG | 0.629776 | 2.4:+24603149 | None:intergenic |
| CTAATGCTACAACTCTTCAA+GGG | 0.636034 | 2.4:+24604943 | None:intergenic |
| GACTGTCTTCCTTACCCCGG+AGG | 0.641992 | 2.4:-24603193 | MS.gene062817:CDS |
| TCATGTGATTATCGTTACGG+AGG | 0.650111 | 2.4:-24604826 | MS.gene062817:CDS |
| GGCTGAAAAGAGACCCGTGT+AGG | 0.671792 | 2.4:-24603162 | MS.gene062817:CDS |
| ATGGTGGTAGCTTTGATGAG+TGG | 0.672519 | 2.4:-24602901 | MS.gene062817:CDS |
| TTGCCTGAGAGTTGTGCAAG+TGG | 0.675075 | 2.4:-24604916 | MS.gene062817:CDS |
| GAGTATATAAGAAAATATGG+TGG | 0.676614 | 2.4:-24602917 | MS.gene062817:CDS |
| AATGACTGTCTTCCTTACCC+CGG | 0.683541 | 2.4:-24603196 | MS.gene062817:CDS |
| TGATTGTCTTAGGGTCATCG+AGG | 0.689894 | 2.4:-24603529 | MS.gene062817:intron |
| AGACTTGATTGAAAGGAATG+CGG | 0.704028 | 2.4:-24604797 | MS.gene062817:CDS |
| TTTGAAGATTCATTAGTTGG+GGG | 0.726871 | 2.4:+24603401 | None:intergenic |
| TCAGCCAAAACAAACCTCCG+GGG | 0.730392 | 2.4:+24603179 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATAAAATTTAATATA+TGG | - | chr2.4:24604388-24604407 | MS.gene062817:CDS | 0.0% |
| !! | TATATATATATATATATTAT+TGG | - | chr2.4:24603473-24603492 | MS.gene062817:CDS | 0.0% |
| !! | TATATAAAGAATTGAAATAT+TGG | - | chr2.4:24604906-24604925 | MS.gene062817:CDS | 10.0% |
| !! | ATAGAGTATATAAGAAAATA+TGG | - | chr2.4:24605610-24605629 | MS.gene062817:CDS | 15.0% |
| !! | CAATAATTAGATTAATCAAA+CGG | - | chr2.4:24603331-24603350 | MS.gene062817:intron | 15.0% |
| !! | CACAAATCTTAATATATTTA+AGG | + | chr2.4:24604004-24604023 | None:intergenic | 15.0% |
| !! | GTTAAGTACTTAATATTAAA+TGG | - | chr2.4:24605460-24605479 | MS.gene062817:CDS | 15.0% |
| !!! | ATAATAAAACTTGTTGTTTA+TGG | - | chr2.4:24604626-24604645 | MS.gene062817:CDS | 15.0% |
| !!! | CATCTATTTTATTAGAAAAA+TGG | + | chr2.4:24603420-24603439 | None:intergenic | 15.0% |
| !!! | TAATATTACAATTTGGTTTT+TGG | - | chr2.4:24605495-24605514 | MS.gene062817:CDS | 15.0% |
| !!! | TATATTTTATGATTGTCTTA+GGG | - | chr2.4:24604992-24605011 | MS.gene062817:CDS | 15.0% |
| !!! | TGTTTTTTACTATAAACTTT+AGG | - | chr2.4:24603208-24603227 | MS.gene062817:CDS | 15.0% |
| !!! | TTATATTTTATGATTGTCTT+AGG | - | chr2.4:24604991-24605010 | MS.gene062817:CDS | 15.0% |
| !! | AAATTAATTATAAGCATACC+CGG | + | chr2.4:24605162-24605181 | None:intergenic | 20.0% |
| !! | AAGTACTTAATATTAAATGG+AGG | - | chr2.4:24605463-24605482 | MS.gene062817:CDS | 20.0% |
| !! | AATATTTGATGTAATCATCA+TGG | + | chr2.4:24603552-24603571 | None:intergenic | 20.0% |
| !! | ATCTTCATGATTACAAATAA+CGG | + | chr2.4:24604087-24604106 | None:intergenic | 20.0% |
| !! | CTAAAGAATGTTTGTATAAA+GGG | - | chr2.4:24605406-24605425 | MS.gene062817:CDS | 20.0% |
| !! | TATTTGAAGATTCATTAGTT+GGG | + | chr2.4:24605134-24605153 | None:intergenic | 20.0% |
| !! | TCAAATATTGACAATCATAT+TGG | - | chr2.4:24603563-24603582 | MS.gene062817:intron | 20.0% |
| !! | TGAATCTTCAAATAAATAAC+CGG | - | chr2.4:24605140-24605159 | MS.gene062817:intron | 20.0% |
| !! | TTATTTGAAGATTCATTAGT+TGG | + | chr2.4:24605135-24605154 | None:intergenic | 20.0% |
| !!! | ATCTTAATATATTTAAGGCT+TGG | + | chr2.4:24603999-24604018 | None:intergenic | 20.0% |
| !!! | GGTTTTATTACTATTCAATA+TGG | + | chr2.4:24604709-24604728 | None:intergenic | 20.0% |
| !!! | TTTTTGTGAAGATTATCTAA+TGG | + | chr2.4:24603298-24603317 | None:intergenic | 20.0% |
| ! | AAACAATAGATACTCATGAT+AGG | + | chr2.4:24604840-24604859 | None:intergenic | 25.0% |
| ! | ACTAATTGAGTAATTGTGAT+AGG | - | chr2.4:24604603-24604622 | MS.gene062817:CDS | 25.0% |
| ! | AGGGATATTATTGAAATTTG+TGG | - | chr2.4:24604209-24604228 | MS.gene062817:intron | 25.0% |
| ! | AGTTCATAGCTTATTATATG+TGG | - | chr2.4:24604580-24604599 | MS.gene062817:CDS | 25.0% |
| ! | ATCATATTTGAAAAGCCTTT+AGG | + | chr2.4:24603452-24603471 | None:intergenic | 25.0% |
| ! | ATGCAAACATTAAGATTAAC+AGG | - | chr2.4:24604453-24604472 | MS.gene062817:CDS | 25.0% |
| ! | ATGGTATCTATTTAATGCTT+AGG | - | chr2.4:24604645-24604664 | MS.gene062817:CDS | 25.0% |
| ! | ATTTGAAGATTCATTAGTTG+GGG | + | chr2.4:24605133-24605152 | None:intergenic | 25.0% |
| ! | CACAAAAAATCACACTTATT+GGG | - | chr2.4:24604540-24604559 | MS.gene062817:CDS | 25.0% |
| ! | CCTAAAGAATGTTTGTATAA+AGG | - | chr2.4:24605405-24605424 | MS.gene062817:CDS | 25.0% |
| ! | CCTTTATACAAACATTCTTT+AGG | + | chr2.4:24605408-24605427 | None:intergenic | 25.0% |
| ! | GAATCTTCAAATAAATAACC+GGG | - | chr2.4:24605141-24605160 | MS.gene062817:intron | 25.0% |
| ! | GAGTATATAAGAAAATATGG+TGG | - | chr2.4:24605613-24605632 | MS.gene062817:CDS | 25.0% |
| ! | GATATTATTGAAATTTGTGG+TGG | - | chr2.4:24604212-24604231 | MS.gene062817:intron | 25.0% |
| ! | GGTTCATATTCAATTACAAT+TGG | - | chr2.4:24604409-24604428 | MS.gene062817:CDS | 25.0% |
| ! | TAATCAATATTTGTAGCATG+AGG | + | chr2.4:24604734-24604753 | None:intergenic | 25.0% |
| ! | TACAATAATGTTCAAATGCT+TGG | - | chr2.4:24604146-24604165 | MS.gene062817:intron | 25.0% |
| ! | TAGATGAACTTTAATCCTAA+AGG | - | chr2.4:24603434-24603453 | MS.gene062817:CDS | 25.0% |
| ! | TCACAAAAAATCACACTTAT+TGG | - | chr2.4:24604539-24604558 | MS.gene062817:CDS | 25.0% |
| ! | TTCAGATCAATGGATAATTT+CGG | + | chr2.4:24605583-24605602 | None:intergenic | 25.0% |
| ! | TTTGTCTTTGGTCAAAATTA+AGG | + | chr2.4:24603074-24603093 | None:intergenic | 25.0% |
| !!! | ATAAGTGTGATTTTTTGTGA+TGG | + | chr2.4:24604539-24604558 | None:intergenic | 25.0% |
| !!! | CATTTCTTTCTAGTTAATAG+AGG | - | chr2.4:24604314-24604333 | MS.gene062817:CDS | 25.0% |
| !!! | GGACAAAATGTTTTTATAGA+TGG | - | chr2.4:24604167-24604186 | MS.gene062817:intron | 25.0% |
| !!! | GGGAAGTATCTTTAAAAATT+TGG | - | chr2.4:24605033-24605052 | MS.gene062817:intron | 25.0% |
| AACCTCAAAAGGTAAATCAA+TGG | + | chr2.4:24603765-24603784 | None:intergenic | 30.0% | |
| ACGACTTTAACATTTGTCTT+TGG | + | chr2.4:24603086-24603105 | None:intergenic | 30.0% | |
| ATCAAACGGTTCATATGTAA+TGG | - | chr2.4:24603345-24603364 | MS.gene062817:intron | 30.0% | |
| CACACACACACATATATATA+TGG | + | chr2.4:24605187-24605206 | None:intergenic | 30.0% | |
| GAGAATGAACTAGGAAAAAT+TGG | - | chr2.4:24603367-24603386 | MS.gene062817:intron | 30.0% | |
| GAGGAACTTACTAGAAAAAA+GGG | - | chr2.4:24603655-24603674 | MS.gene062817:intron | 30.0% | |
| GATTCATGTGATTATCGTTA+CGG | - | chr2.4:24603701-24603720 | MS.gene062817:intron | 30.0% | |
| GTTTGTATAAAGGGATACAA+AGG | - | chr2.4:24605415-24605434 | MS.gene062817:CDS | 30.0% | |
| TACCATTCAATTCAAAATCG+AGG | + | chr2.4:24605069-24605088 | None:intergenic | 30.0% | |
| TATTGGAATTTATGCGTAAC+AGG | - | chr2.4:24603490-24603509 | MS.gene062817:CDS | 30.0% | |
| TCAGATCAATGGATAATTTC+GGG | + | chr2.4:24605582-24605601 | None:intergenic | 30.0% | |
| TGAGGAACTTACTAGAAAAA+AGG | - | chr2.4:24603654-24603673 | MS.gene062817:intron | 30.0% | |
| TTACGAAATCACATTTCTCA+AGG | + | chr2.4:24603953-24603972 | None:intergenic | 30.0% | |
| TTTCTTATATACTCTATCCC+AGG | + | chr2.4:24605607-24605626 | None:intergenic | 30.0% | |
| TTTGAAGATTCATTAGTTGG+GGG | + | chr2.4:24605132-24605151 | None:intergenic | 30.0% | |
| ! | ACTATTCAATATGGTGTTGA+TGG | + | chr2.4:24604700-24604719 | None:intergenic | 30.0% |
| ! | AGAGTATTCAAAATCTGTTG+GGG | + | chr2.4:24603852-24603871 | None:intergenic | 30.0% |
| ! | ATATAAGCTAGAAGTGCATA+AGG | + | chr2.4:24602967-24602986 | None:intergenic | 30.0% |
| ! | TATGTAATGGAGAATGAACT+AGG | - | chr2.4:24603358-24603377 | MS.gene062817:intron | 30.0% |
| ! | TTTGGTTTCTGCATTTAACA+TGG | - | chr2.4:24604043-24604062 | MS.gene062817:intron | 30.0% |
| !! | GAGAGTATTCAAAATCTGTT+GGG | + | chr2.4:24603853-24603872 | None:intergenic | 30.0% |
| !! | TACAAACATTCTTTAGGTTG+TGG | + | chr2.4:24605402-24605421 | None:intergenic | 30.0% |
| !! | TGAGAGTATTCAAAATCTGT+TGG | + | chr2.4:24603854-24603873 | None:intergenic | 30.0% |
| !!! | AACCATTGATTTACCTTTTG+AGG | - | chr2.4:24603760-24603779 | MS.gene062817:intron | 30.0% |
| !!! | ATTTTTTGTGATGGCTCAAA+AGG | + | chr2.4:24604530-24604549 | None:intergenic | 30.0% |
| !!! | CTCTGTGCAATTTGATTTTT+TGG | - | chr2.4:24604765-24604784 | MS.gene062817:CDS | 30.0% |
| !!! | TTTTTTGTGATGGCTCAAAA+GGG | + | chr2.4:24604529-24604548 | None:intergenic | 30.0% |
| AAACTGGAGAAAACCTCAAA+AGG | + | chr2.4:24603776-24603795 | None:intergenic | 35.0% | |
| AAGGGAATCATACTTGCATT+AGG | + | chr2.4:24604511-24604530 | None:intergenic | 35.0% | |
| ACTAGAAAAAAGGGTGATGA+AGG | - | chr2.4:24603664-24603683 | MS.gene062817:intron | 35.0% | |
| AGACTTGATTGAAAGGAATG+CGG | - | chr2.4:24603733-24603752 | MS.gene062817:intron | 35.0% | |
| AGGGAATCATACTTGCATTA+GGG | + | chr2.4:24604510-24604529 | None:intergenic | 35.0% | |
| AGGGACACAAATCAAAGTTA+TGG | - | chr2.4:24602912-24602931 | MS.gene062817:CDS | 35.0% | |
| AGTAATCCAAATTGACCTAG+AGG | + | chr2.4:24605300-24605319 | None:intergenic | 35.0% | |
| ATGTGATTTCGTAACAGATG+AGG | - | chr2.4:24603959-24603978 | MS.gene062817:intron | 35.0% | |
| CAAAATCTGTTGGGGATTAA+GGG | + | chr2.4:24603844-24603863 | None:intergenic | 35.0% | |
| CAACTCAAGAACCTTAAAAC+TGG | + | chr2.4:24603792-24603811 | None:intergenic | 35.0% | |
| CAATATTTGTAGCATGAGGA+AGG | + | chr2.4:24604730-24604749 | None:intergenic | 35.0% | |
| CAATTCAAAATCGAGGCAAA+GGG | + | chr2.4:24605062-24605081 | None:intergenic | 35.0% | |
| CAGATCAATGGATAATTTCG+GGG | + | chr2.4:24605581-24605600 | None:intergenic | 35.0% | |
| CTAATGCTACAACTCTTCAA+GGG | + | chr2.4:24603590-24603609 | None:intergenic | 35.0% | |
| CTTTGGTCAAAATTAAGGCT+AGG | + | chr2.4:24603069-24603088 | None:intergenic | 35.0% | |
| GAATACCAGACTTGATTGAA+AGG | - | chr2.4:24603726-24603745 | MS.gene062817:intron | 35.0% | |
| GACACAAATCAAAGTTATGG+AGG | - | chr2.4:24602915-24602934 | MS.gene062817:CDS | 35.0% | |
| GCATACTATAGGTTACCAAT+TGG | + | chr2.4:24604678-24604697 | None:intergenic | 35.0% | |
| GGCTTGTCTAGAGATATAAA+GGG | + | chr2.4:24603277-24603296 | None:intergenic | 35.0% | |
| GTAATCCAAATTGACCTAGA+GGG | + | chr2.4:24605299-24605318 | None:intergenic | 35.0% | |
| TCAAAATCTGTTGGGGATTA+AGG | + | chr2.4:24603845-24603864 | None:intergenic | 35.0% | |
| TCAATTCAAAATCGAGGCAA+AGG | + | chr2.4:24605063-24605082 | None:intergenic | 35.0% | |
| TCATGAAGATCTGATCTTAG+AGG | - | chr2.4:24604097-24604116 | MS.gene062817:intron | 35.0% | |
| TCTAATGCTACAACTCTTCA+AGG | + | chr2.4:24603591-24603610 | None:intergenic | 35.0% | |
| TGCTGCATTACAATTCTACT+AGG | - | chr2.4:24604364-24604383 | MS.gene062817:CDS | 35.0% | |
| TGTATAAAGGGATACAAAGG+TGG | - | chr2.4:24605418-24605437 | MS.gene062817:CDS | 35.0% | |
| TTCCAAGTGAAGTATAGTAG+AGG | + | chr2.4:24604255-24604274 | None:intergenic | 35.0% | |
| TTCCTCTACTATACTTCACT+TGG | - | chr2.4:24604250-24604269 | MS.gene062817:intron | 35.0% | |
| ! | ATGCAAGCTTTTGACAACAA+GGG | - | chr2.4:24604190-24604209 | MS.gene062817:intron | 35.0% |
| ! | TATCCATTGATCTGAAACCT+GGG | - | chr2.4:24605587-24605606 | MS.gene062817:CDS | 35.0% |
| ! | TGAAATTTGTGGTGGCATTT+TGG | - | chr2.4:24604220-24604239 | MS.gene062817:intron | 35.0% |
| ! | TGAGGTTTTCTCCAGTTTTA+AGG | - | chr2.4:24603778-24603797 | MS.gene062817:intron | 35.0% |
| ! | TGCCTCGATTTTGAATTGAA+TGG | - | chr2.4:24605064-24605083 | MS.gene062817:intron | 35.0% |
| ! | TGGCTTGTCTAGAGATATAA+AGG | + | chr2.4:24603278-24603297 | None:intergenic | 35.0% |
| ! | TTATCCATTGATCTGAAACC+TGG | - | chr2.4:24605586-24605605 | MS.gene062817:CDS | 35.0% |
| !! | AAATAATGGGTGAAGGAGAA+GGG | - | chr2.4:24602893-24602912 | MS.gene062817:CDS | 35.0% |
| !! | TCTGAAGAAATAATGGGTGA+AGG | - | chr2.4:24602886-24602905 | MS.gene062817:CDS | 35.0% |
| ACAGGTAGATCTTGAAAGTG+AGG | - | chr2.4:24603508-24603527 | MS.gene062817:CDS | 40.0% | |
| CATTTCTCCACTTCCTTACA+CGG | - | chr2.4:24602987-24603006 | MS.gene062817:CDS | 40.0% | |
| GAGTGCAAAAGAAAGAGCTA+TGG | + | chr2.4:24605101-24605120 | None:intergenic | 40.0% | |
| GCATTCCTTTCAATCAAGTC+TGG | + | chr2.4:24603734-24603753 | None:intergenic | 40.0% | |
| TAAGATTAACAGGCGAGTCA+AGG | - | chr2.4:24604463-24604482 | MS.gene062817:CDS | 40.0% | |
| TATCCCAGGTTTCAGATCAA+TGG | + | chr2.4:24605593-24605612 | None:intergenic | 40.0% | |
| TCATGTGATTATCGTTACGG+AGG | - | chr2.4:24603704-24603723 | MS.gene062817:intron | 40.0% | |
| TGCAAGGTAGAAGTTTAGTC+TGG | + | chr2.4:24603133-24603152 | None:intergenic | 40.0% | |
| TGCTTAGGATGAACTCCAAT+TGG | - | chr2.4:24604660-24604679 | MS.gene062817:CDS | 40.0% | |
| TTTCAGCCAAAACAAACCTC+CGG | + | chr2.4:24605356-24605375 | None:intergenic | 40.0% | |
| ! | GATGCAAGCTTTTGACAACA+AGG | - | chr2.4:24604189-24604208 | MS.gene062817:intron | 40.0% |
| !! | GAAATAATGGGTGAAGGAGA+AGG | - | chr2.4:24602892-24602911 | MS.gene062817:CDS | 40.0% |
| !! | GTTTTTGGATGACTGCTCAT+GGG | - | chr2.4:24605510-24605529 | MS.gene062817:CDS | 40.0% |
| !! | TGGTGTTGATGGCATACTAT+AGG | + | chr2.4:24604689-24604708 | None:intergenic | 40.0% |
| AACTTCTACCTTGCAGTGAC+TGG | - | chr2.4:24603138-24603157 | MS.gene062817:CDS | 45.0% | |
| AAGATTCATTAGTTGGGGGC+AGG | + | chr2.4:24605128-24605147 | None:intergenic | 45.0% | |
| AATCTGTTGGGGATTAAGGG+AGG | + | chr2.4:24603841-24603860 | None:intergenic | 45.0% | |
| AATGACTGTCTTCCTTACCC+CGG | - | chr2.4:24605334-24605353 | MS.gene062817:intron | 45.0% | |
| ACATTTAACCCTCACCCTCT+AGG | - | chr2.4:24605282-24605301 | MS.gene062817:intron | 45.0% | |
| ACTTCTACCTTGCAGTGACT+GGG | - | chr2.4:24603139-24603158 | MS.gene062817:CDS | 45.0% | |
| ATCTGTTGGGGATTAAGGGA+GGG | + | chr2.4:24603840-24603859 | None:intergenic | 45.0% | |
| CAAATTGACCTAGAGGGTGA+GGG | + | chr2.4:24605293-24605312 | None:intergenic | 45.0% | |
| CCAAGCGATGTGAATCATTG+TGG | - | chr2.4:24603034-24603053 | MS.gene062817:CDS | 45.0% | |
| CCACAATGATTCACATCGCT+TGG | + | chr2.4:24603037-24603056 | None:intergenic | 45.0% | |
| TCTTAGAGGCCCCAAAACTT+CGG | - | chr2.4:24604111-24604130 | MS.gene062817:intron | 45.0% | |
| TGATTGTCTTAGGGTCATCG+AGG | - | chr2.4:24605001-24605020 | MS.gene062817:CDS | 45.0% | |
| TTCAGCCAAAACAAACCTCC+GGG | + | chr2.4:24605355-24605374 | None:intergenic | 45.0% | |
| TTTGTGATGTGAACGAGCGT+AGG | - | chr2.4:24604018-24604037 | MS.gene062817:intron | 45.0% | |
| ! | ACGTAGAACCCGAAGTTTTG+GGG | + | chr2.4:24604123-24604142 | None:intergenic | 45.0% |
| ! | CACGTAGAACCCGAAGTTTT+GGG | + | chr2.4:24604124-24604143 | None:intergenic | 45.0% |
| ! | TGTGAACGAGCGTAGGATTT+TGG | - | chr2.4:24604025-24604044 | MS.gene062817:intron | 45.0% |
| !! | ATGGTGGTAGCTTTGATGAG+TGG | - | chr2.4:24605629-24605648 | MS.gene062817:CDS | 45.0% |
| !! | GGTTTTTGGATGACTGCTCA+TGG | - | chr2.4:24605509-24605528 | MS.gene062817:CDS | 45.0% |
| !! | TGGTGGTAGCTTTGATGAGT+GGG | - | chr2.4:24605630-24605649 | MS.gene062817:CDS | 45.0% |
| !! | AATTCTTTATATAAATTATT+TGG | + | chr2.4:24604899-24604918 | None:intergenic | 5.0% |
| !! | TTATAAATAATATTACAATT+TGG | - | chr2.4:24605488-24605507 | MS.gene062817:CDS | 5.0% |
| CAAAACAAACCTCCGGGGTA+AGG | + | chr2.4:24605349-24605368 | None:intergenic | 50.0% | |
| CCAAATTGACCTAGAGGGTG+AGG | + | chr2.4:24605294-24605313 | None:intergenic | 50.0% | |
| CCTCACCCTCTAGGTCAATT+TGG | - | chr2.4:24605291-24605310 | MS.gene062817:intron | 50.0% | |
| CTTAGAGGCCCCAAAACTTC+GGG | - | chr2.4:24604112-24604131 | MS.gene062817:intron | 50.0% | |
| TCAGCCAAAACAAACCTCCG+GGG | + | chr2.4:24605354-24605373 | None:intergenic | 50.0% | |
| TGCCTGAGAGTTGTGCAAGT+GGG | - | chr2.4:24603615-24603634 | MS.gene062817:intron | 50.0% | |
| TGTGCAAGTGGGGATGTTGT+GGG | - | chr2.4:24603626-24603645 | MS.gene062817:intron | 50.0% | |
| TTGCCTGAGAGTTGTGCAAG+TGG | - | chr2.4:24603614-24603633 | MS.gene062817:intron | 50.0% | |
| TTGTGCAAGTGGGGATGTTG+TGG | - | chr2.4:24603625-24603644 | MS.gene062817:intron | 50.0% | |
| TTGTGGCTGACACACCTACA+CGG | + | chr2.4:24605385-24605404 | None:intergenic | 50.0% | |
| ! | GCACGTAGAACCCGAAGTTT+TGG | + | chr2.4:24604125-24604144 | None:intergenic | 50.0% |
| ! | GGTCATCGAGGTTCTAGCAT+GGG | - | chr2.4:24605013-24605032 | MS.gene062817:CDS | 50.0% |
| !! | CTTACCCCGGAGGTTTGTTT+TGG | - | chr2.4:24605347-24605366 | MS.gene062817:intron | 50.0% |
| GCCTGAGAGTTGTGCAAGTG+GGG | - | chr2.4:24603616-24603635 | MS.gene062817:intron | 55.0% | |
| GCGACTTCCGTGTAAGGAAG+TGG | + | chr2.4:24602997-24603016 | None:intergenic | 55.0% | |
| GGCTGAAAAGAGACCCGTGT+AGG | - | chr2.4:24605368-24605387 | MS.gene062817:intron | 55.0% | |
| GTGCAAGTGGGGATGTTGTG+GGG | - | chr2.4:24603627-24603646 | MS.gene062817:intron | 55.0% | |
| GTTCTCGCGACTTCCGTGTA+AGG | + | chr2.4:24603003-24603022 | None:intergenic | 55.0% | |
| TACGTTGCCCAGTCACTGCA+AGG | + | chr2.4:24603149-24603168 | None:intergenic | 55.0% | |
| TCCCCACTTGCACAACTCTC+AGG | + | chr2.4:24603620-24603639 | None:intergenic | 55.0% | |
| TGCAGTGACTGGGCAACGTA+AGG | - | chr2.4:24603149-24603168 | MS.gene062817:CDS | 55.0% | |
| TGTGGCTGACACACCTACAC+GGG | + | chr2.4:24605384-24605403 | None:intergenic | 55.0% | |
| ! | GGGTCATCGAGGTTCTAGCA+TGG | - | chr2.4:24605012-24605031 | MS.gene062817:CDS | 55.0% |
| CAAGTGGGGATGTTGTGGGG+TGG | - | chr2.4:24603630-24603649 | MS.gene062817:intron | 60.0% | |
| GACTGTCTTCCTTACCCCGG+AGG | - | chr2.4:24605337-24605356 | MS.gene062817:intron | 60.0% | |
| GGGATGTTGTGGGGTGGATG+AGG | - | chr2.4:24603636-24603655 | MS.gene062817:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 24602883 | 24605669 | 24602883 | ID=MS.gene062817 |
| chr2.4 | mRNA | 24602883 | 24605669 | 24602883 | ID=MS.gene062817.t1;Parent=MS.gene062817 |
| chr2.4 | exon | 24605382 | 24605669 | 24605382 | ID=MS.gene062817.t1.exon1;Parent=MS.gene062817.t1 |
| chr2.4 | CDS | 24605382 | 24605669 | 24605382 | ID=cds.MS.gene062817.t1;Parent=MS.gene062817.t1 |
| chr2.4 | exon | 24604753 | 24605040 | 24604753 | ID=MS.gene062817.t1.exon2;Parent=MS.gene062817.t1 |
| chr2.4 | CDS | 24604753 | 24605040 | 24604753 | ID=cds.MS.gene062817.t1;Parent=MS.gene062817.t1 |
| chr2.4 | exon | 24604311 | 24604694 | 24604311 | ID=MS.gene062817.t1.exon3;Parent=MS.gene062817.t1 |
| chr2.4 | CDS | 24604311 | 24604694 | 24604311 | ID=cds.MS.gene062817.t1;Parent=MS.gene062817.t1 |
| chr2.4 | exon | 24603390 | 24603539 | 24603390 | ID=MS.gene062817.t1.exon4;Parent=MS.gene062817.t1 |
| chr2.4 | CDS | 24603390 | 24603539 | 24603390 | ID=cds.MS.gene062817.t1;Parent=MS.gene062817.t1 |
| chr2.4 | exon | 24602883 | 24603248 | 24602883 | ID=MS.gene062817.t1.exon5;Parent=MS.gene062817.t1 |
| chr2.4 | CDS | 24602883 | 24603248 | 24602883 | ID=cds.MS.gene062817.t1;Parent=MS.gene062817.t1 |
| Gene Sequence |
| Protein sequence |
