Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063093.t1 | XP_003604056.2 | 97 | 270 | 8 | 0 | 42 | 311 | 1 | 270 | 7.80E-144 | 520 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063093.t1 | P49227 | 80.7 | 270 | 52 | 0 | 42 | 311 | 1 | 270 | 1.7e-123 | 443.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063093.t1 | G7J8J8 | 97.0 | 270 | 8 | 0 | 42 | 311 | 1 | 270 | 5.6e-144 | 520.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049361 | MS.gene063093 | 0.801818 | 7.52E-49 | -1.69E-46 |
| MS.gene050134 | MS.gene063093 | 0.86514 | 7.33E-65 | -1.69E-46 |
| MS.gene050791 | MS.gene063093 | 0.824123 | 9.57E-54 | -1.69E-46 |
| MS.gene051984 | MS.gene063093 | 0.801747 | 7.78E-49 | -1.69E-46 |
| MS.gene053224 | MS.gene063093 | 0.841858 | 3.68E-58 | -1.69E-46 |
| MS.gene057272 | MS.gene063093 | 0.843089 | 1.74E-58 | -1.69E-46 |
| MS.gene057643 | MS.gene063093 | 0.812723 | 3.67E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063093.t1 | MTR_3g118030 | 97.037 | 270 | 8 | 0 | 42 | 311 | 1 | 270 | 0.0 | 536 |
| MS.gene063093.t1 | MTR_8g028125 | 89.630 | 270 | 28 | 0 | 42 | 311 | 1 | 270 | 0.0 | 507 |
| MS.gene063093.t1 | MTR_4g016680 | 49.306 | 144 | 34 | 1 | 168 | 311 | 8 | 112 | 1.45e-34 | 123 |
| MS.gene063093.t1 | MTR_2g435940 | 73.611 | 72 | 14 | 1 | 219 | 285 | 24 | 95 | 5.53e-27 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063093.t1 | AT5G39740 | 80.741 | 270 | 52 | 0 | 42 | 311 | 1 | 270 | 1.94e-164 | 460 |
| MS.gene063093.t1 | AT5G39740 | 80.741 | 270 | 52 | 0 | 42 | 311 | 1 | 270 | 1.94e-164 | 460 |
| MS.gene063093.t1 | AT3G25520 | 80.741 | 270 | 52 | 0 | 42 | 311 | 1 | 270 | 4.45e-163 | 456 |
| MS.gene063093.t1 | AT3G25520 | 80.741 | 270 | 52 | 0 | 42 | 311 | 1 | 270 | 4.45e-163 | 456 |
| MS.gene063093.t1 | AT3G25520 | 79.747 | 158 | 32 | 0 | 154 | 311 | 2 | 159 | 1.99e-88 | 263 |
Find 88 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGAACAACGTAACGGTATT+TGG | 0.124401 | 3.3:+95790879 | None:intergenic |
| TGCACCAAAGACCCGGTTTC+CGG | 0.261045 | 3.3:+95790333 | None:intergenic |
| TCCTTTGGTGGCTGCTTCTC+AGG | 0.295727 | 3.3:+95789832 | None:intergenic |
| TTATTGCACTGGTCTCCTTT+TGG | 0.304693 | 3.3:-95790571 | MS.gene063093:CDS |
| TATGATTATTGTTAATCTTC+CGG | 0.311733 | 3.3:-95791613 | MS.gene063093:CDS |
| GCTTGATATATTCACTGAAA+TGG | 0.313676 | 3.3:+95789935 | None:intergenic |
| GGCTTCAGGGAGCTTTGGAC+GGG | 0.327426 | 3.3:-95790227 | MS.gene063093:intron |
| ACCACCGGAAACCGGGTCTT+TGG | 0.336386 | 3.3:-95790337 | MS.gene063093:CDS |
| ATTGTCTCTGCTACCATTGC+TGG | 0.361362 | 3.3:-95790758 | MS.gene063093:CDS |
| AGTTCTTAAAACTCTTGAAA+TGG | 0.366221 | 3.3:-95790541 | MS.gene063093:CDS |
| TGATACCTCTTGTGTTCCTT+TGG | 0.367997 | 3.3:+95789817 | None:intergenic |
| CTTGATATATTCACTGAAAT+GGG | 0.374691 | 3.3:+95789936 | None:intergenic |
| AATCGAGGAACTATACAAAA+AGG | 0.377398 | 3.3:-95789893 | MS.gene063093:CDS |
| CACAGCGACAAAAGGTTTGC+TGG | 0.383857 | 3.3:-95790189 | MS.gene063093:CDS |
| CGAACAACGTAACGGTATTT+GGG | 0.383918 | 3.3:+95790880 | None:intergenic |
| TTAAGACCACCACCGGAAAC+CGG | 0.405019 | 3.3:-95790345 | MS.gene063093:CDS |
| TGTTTGGCTTCAGGGAGCTT+TGG | 0.408256 | 3.3:-95790232 | MS.gene063093:intron |
| CTTACATTCGGGTCGGACTC+TGG | 0.414262 | 3.3:+95791564 | None:intergenic |
| TACCTCTTGTGTTCCTTTGG+TGG | 0.421148 | 3.3:+95789820 | None:intergenic |
| CCGAATGGGTGGTGGGTGAT+TGG | 0.423400 | 3.3:+95791123 | None:intergenic |
| GAGAGCACGGAATGGCCTCC+TGG | 0.423509 | 3.3:+95790384 | None:intergenic |
| ATTTGAACATACCTTCATAT+AGG | 0.435520 | 3.3:+95790095 | None:intergenic |
| TTCCGATTCCGAATGGGTGG+TGG | 0.437998 | 3.3:+95791115 | None:intergenic |
| TGGCTTCAGGGAGCTTTGGA+CGG | 0.456348 | 3.3:-95790228 | MS.gene063093:intron |
| CATAGTTAGTAAGGCCTACA+TGG | 0.460963 | 3.3:+95790684 | None:intergenic |
| CCTCACTTTGGCCTCCATGT+AGG | 0.463629 | 3.3:-95790698 | MS.gene063093:CDS |
| AAAGACCCGGTTTCCGGTGG+TGG | 0.468463 | 3.3:+95790339 | None:intergenic |
| ACCCACCACCCATTCGGAAT+CGG | 0.470171 | 3.3:-95791117 | MS.gene063093:CDS |
| TTCCGTGCTCTCCTTGATGT+TGG | 0.475927 | 3.3:-95790373 | MS.gene063093:CDS |
| TCTTATATTACTCAGGCAAC+CGG | 0.479611 | 3.3:-95790436 | MS.gene063093:intron |
| TTCTTCAGGTTGTACCTGCT+CGG | 0.487421 | 3.3:+95789636 | None:intergenic |
| GCTTCAGGGAGCTTTGGACG+GGG | 0.489494 | 3.3:-95790226 | MS.gene063093:intron |
| ATACCGTTACGTTGTTCGAT+TGG | 0.490656 | 3.3:-95790875 | MS.gene063093:intron |
| TACCTGCAGCATAGTTAGTA+AGG | 0.490657 | 3.3:+95790675 | None:intergenic |
| GCGTTGTTTGTCTTCCGAGC+AGG | 0.491279 | 3.3:-95789650 | MS.gene063093:CDS |
| CTTCAGGGAGCTTTGGACGG+GGG | 0.497730 | 3.3:-95790225 | MS.gene063093:intron |
| TAAGAACTCGGCGAGCCAAA+AGG | 0.499289 | 3.3:+95790556 | None:intergenic |
| ACTCAAGACGCTAACAAATA+CGG | 0.500093 | 3.3:-95790907 | MS.gene063093:CDS |
| CCAATCACCCACCACCCATT+CGG | 0.501475 | 3.3:-95791123 | MS.gene063093:CDS |
| GAAATTCAAGAGAAGAAGAG+AGG | 0.503110 | 3.3:-95790965 | MS.gene063093:CDS |
| ACAGCCGCGGTCGAAGGTGC+GGG | 0.506236 | 3.3:-95791150 | MS.gene063093:CDS |
| AGCTTGATGCTGAGGTTCAC+CGG | 0.506705 | 3.3:-95790146 | MS.gene063093:CDS |
| GCCTGAGAAGCAGCCACCAA+AGG | 0.507172 | 3.3:-95789833 | MS.gene063093:CDS |
| ATATTCCTCACAGCGACAAA+AGG | 0.513989 | 3.3:-95790197 | MS.gene063093:CDS |
| GTACCATTCCGATTCCGAAT+GGG | 0.517511 | 3.3:+95791109 | None:intergenic |
| ATGTTACCAGCTTATTGCAC+TGG | 0.517859 | 3.3:-95790582 | MS.gene063093:intron |
| CTGTGGAACCAGCTGACTCC+AGG | 0.519286 | 3.3:-95790402 | MS.gene063093:CDS |
| GTTGATTCAGGCATTTGTGA+AGG | 0.519616 | 3.3:-95791025 | MS.gene063093:intron |
| GACAGCCGCGGTCGAAGGTG+CGG | 0.523616 | 3.3:-95791151 | MS.gene063093:CDS |
| CCGGGTCTTTGGTGCACTCA+AGG | 0.524232 | 3.3:-95790326 | MS.gene063093:intron |
| AAATTCAAGAGAAGAAGAGA+GGG | 0.524882 | 3.3:-95790964 | MS.gene063093:CDS |
| AATGGCCTCCTGGAGTCAGC+TGG | 0.528100 | 3.3:+95790394 | None:intergenic |
| CACCAGACAGCCGCGGTCGA+AGG | 0.530457 | 3.3:-95791156 | MS.gene063093:intron |
| TTGAGTAATCAAACGAACTC+TGG | 0.530507 | 3.3:+95790924 | None:intergenic |
| GCACATGAGCTTCCTCACTT+TGG | 0.534108 | 3.3:-95790710 | MS.gene063093:CDS |
| GAAATGGATGATCAGTATGA+AGG | 0.545359 | 3.3:-95790525 | MS.gene063093:CDS |
| GGTCTTGTTAAGACCACCAC+CGG | 0.557334 | 3.3:-95790352 | MS.gene063093:CDS |
| TTCCACAGAATAATCCTCTC+CGG | 0.558152 | 3.3:+95790417 | None:intergenic |
| CCTTGAGTGCACCAAAGACC+CGG | 0.561480 | 3.3:+95790326 | None:intergenic |
| TCCGATTCCGAATGGGTGGT+GGG | 0.565668 | 3.3:+95791116 | None:intergenic |
| GGCCTTACTAACTATGCTGC+AGG | 0.566671 | 3.3:-95790677 | MS.gene063093:intron |
| TAAGACCACCACCGGAAACC+GGG | 0.570064 | 3.3:-95790344 | MS.gene063093:CDS |
| TACATTACTTACATTCGGGT+CGG | 0.570559 | 3.3:+95791557 | None:intergenic |
| ACATGTTGCTGCCTATATGA+AGG | 0.573009 | 3.3:-95790106 | MS.gene063093:intron |
| GATTGAGGGATCTGCACGAA+TGG | 0.575419 | 3.3:+95789861 | None:intergenic |
| CGTACCATTCCGATTCCGAA+TGG | 0.575768 | 3.3:+95791108 | None:intergenic |
| TAATCAAACGAACTCTGGCT+CGG | 0.582000 | 3.3:+95790929 | None:intergenic |
| AAGAACAATATCACCAGCAA+TGG | 0.583771 | 3.3:+95790745 | None:intergenic |
| CCACCCATTCGGAATCGGAA+TGG | 0.587704 | 3.3:-95791112 | MS.gene063093:intron |
| TTCAGTGAATATATCAAGCG+TGG | 0.592838 | 3.3:-95789931 | MS.gene063093:CDS |
| AAGCGTGGAATTGAAGCGGA+TGG | 0.593465 | 3.3:-95789916 | MS.gene063093:CDS |
| TTCTCTGCACCAGACAGCCG+CGG | 0.593497 | 3.3:-95791163 | MS.gene063093:intron |
| GACCAACATCAAGGAGAGCA+CGG | 0.604422 | 3.3:+95790371 | None:intergenic |
| TTACCAATCGAACAACGTAA+CGG | 0.610329 | 3.3:+95790872 | None:intergenic |
| TCTTAACAAGACCAACATCA+AGG | 0.618405 | 3.3:+95790362 | None:intergenic |
| ACTGCCCGCACCTTCGACCG+CGG | 0.619628 | 3.3:+95791146 | None:intergenic |
| ACCAAAGACCCGGTTTCCGG+TGG | 0.622290 | 3.3:+95790336 | None:intergenic |
| TATCAAGCGTGGAATTGAAG+CGG | 0.625635 | 3.3:-95789920 | MS.gene063093:CDS |
| CCATTCCGATTCCGAATGGG+TGG | 0.629206 | 3.3:+95791112 | None:intergenic |
| AATTGAAGCGGATGGAATCG+AGG | 0.652387 | 3.3:-95789908 | MS.gene063093:CDS |
| ACATCAAGGAGAGCACGGAA+TGG | 0.653230 | 3.3:+95790376 | None:intergenic |
| AGCCACCAAAGGAACACAAG+AGG | 0.664029 | 3.3:-95789822 | MS.gene063093:intron |
| TATTACTCAGGCAACCGGAG+AGG | 0.678581 | 3.3:-95790431 | MS.gene063093:intron |
| TGGAACCAGCTGACTCCAGG+AGG | 0.680812 | 3.3:-95790399 | MS.gene063093:CDS |
| CCTACATGGAGGCCAAAGTG+AGG | 0.682005 | 3.3:+95790698 | None:intergenic |
| AGTTAGTAAGGCCTACATGG+AGG | 0.688944 | 3.3:+95790687 | None:intergenic |
| AACCGGAGAGGATTATTCTG+TGG | 0.701124 | 3.3:-95790419 | MS.gene063093:CDS |
| TCAGTATGAAGGCAATGTTG+AGG | 0.719344 | 3.3:-95790514 | MS.gene063093:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAAATTAAAAAAATGAAA+AGG | + | chr3.3:95791199-95791218 | None:intergenic | 10.0% |
| !!! | TTTCATTTTTTTAATTTGTA+AGG | - | chr3.3:95791199-95791218 | MS.gene063093:intron | 10.0% |
| !! | TGACATTGATATTTATTAAT+CGG | - | chr3.3:95790994-95791013 | MS.gene063093:CDS | 15.0% |
| !!! | CGATTAATTTGATAATTATA+TGG | + | chr3.3:95790643-95790662 | None:intergenic | 15.0% |
| !!! | TAATTATATGGATTAAAAAG+AGG | + | chr3.3:95790631-95790650 | None:intergenic | 15.0% |
| !! | AAATACTACTAATTCAAACA+GGG | + | chr3.3:95791511-95791530 | None:intergenic | 20.0% |
| !! | GACATTGATATTTATTAATC+GGG | - | chr3.3:95790995-95791014 | MS.gene063093:CDS | 20.0% |
| !! | GTTCAAATAATGTCTTTATT+GGG | - | chr3.3:95791172-95791191 | MS.gene063093:intron | 20.0% |
| !! | TGTTCAAATAATGTCTTTAT+TGG | - | chr3.3:95791171-95791190 | MS.gene063093:intron | 20.0% |
| !!! | AGTTAAAAGAGAGTTTTTTA+GGG | + | chr3.3:95790042-95790061 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTGTAGACATTGA+TGG | - | chr3.3:95791269-95791288 | MS.gene063093:intron | 20.0% |
| ! | AGTTCTTAAAACTCTTGAAA+TGG | - | chr3.3:95790711-95790730 | MS.gene063093:CDS | 25.0% |
| ! | ATTTGAACATACCTTCATAT+AGG | + | chr3.3:95791160-95791179 | None:intergenic | 25.0% |
| ! | CTTGATATATTCACTGAAAT+GGG | + | chr3.3:95791319-95791338 | None:intergenic | 25.0% |
| ! | GAAATACTACTAATTCAAAC+AGG | + | chr3.3:95791512-95791531 | None:intergenic | 25.0% |
| ! | GAGTAATATAAGACATACAA+AGG | + | chr3.3:95790809-95790828 | None:intergenic | 25.0% |
| ! | GTTAGTTAGTTAGTTAAAAG+AGG | + | chr3.3:95790195-95790214 | None:intergenic | 25.0% |
| ! | TAGGGATTGAAAATTAAGTA+TGG | + | chr3.3:95790424-95790443 | None:intergenic | 25.0% |
| ! | TGTCATACATTACTTACATT+CGG | + | chr3.3:95789703-95789722 | None:intergenic | 25.0% |
| ! | TTGTATGTCTTATATTACTC+AGG | - | chr3.3:95790809-95790828 | MS.gene063093:intron | 25.0% |
| ! | TTGTCTACAAGTAGTAATAA+TGG | + | chr3.3:95790454-95790473 | None:intergenic | 25.0% |
| !! | ACAAGTAGTAATAATGGTTT+TGG | + | chr3.3:95790448-95790467 | None:intergenic | 25.0% |
| !! | ATTTATTAATCGGGTTTGTT+TGG | - | chr3.3:95791004-95791023 | MS.gene063093:CDS | 25.0% |
| !! | CTAAAAAACTCTCTTTTAAC+TGG | - | chr3.3:95790041-95790060 | MS.gene063093:intron | 25.0% |
| !! | GACTATTTACTATTGATGAT+TGG | - | chr3.3:95791473-95791492 | MS.gene063093:intron | 25.0% |
| !!! | AAATGGGTTTGATATTTTTC+AGG | + | chr3.3:95791303-95791322 | None:intergenic | 25.0% |
| !!! | AGTAATAATGGTTTTGGTTA+GGG | + | chr3.3:95790442-95790461 | None:intergenic | 25.0% |
| !!! | CAGTTAAAAGAGAGTTTTTT+AGG | + | chr3.3:95790043-95790062 | None:intergenic | 25.0% |
| !!! | GAGTCTATTTTTATAATGGA+TGG | - | chr3.3:95789874-95789893 | MS.gene063093:CDS | 25.0% |
| !!! | TAAAGAATGTTTGTTGATTC+AGG | - | chr3.3:95790215-95790234 | MS.gene063093:CDS | 25.0% |
| !!! | TAGTAATAATGGTTTTGGTT+AGG | + | chr3.3:95790443-95790462 | None:intergenic | 25.0% |
| !!! | TATTTTTATAATGGATGGAG+TGG | - | chr3.3:95789879-95789898 | MS.gene063093:CDS | 25.0% |
| !!! | TTTCAAGAGTTTTAAGAACT+CGG | + | chr3.3:95790711-95790730 | None:intergenic | 25.0% |
| AAATTCAAGAGAAGAAGAGA+GGG | - | chr3.3:95790288-95790307 | MS.gene063093:intron | 30.0% | |
| AATCGAGGAACTATACAAAA+AGG | - | chr3.3:95791359-95791378 | MS.gene063093:intron | 30.0% | |
| GCTTGATATATTCACTGAAA+TGG | + | chr3.3:95791320-95791339 | None:intergenic | 30.0% | |
| GTCATACATTACTTACATTC+GGG | + | chr3.3:95789702-95789721 | None:intergenic | 30.0% | |
| GTTAGTTAGTTAAAAGAGGA+TGG | + | chr3.3:95790191-95790210 | None:intergenic | 30.0% | |
| TATCAATGTCACAAGAATAG+AGG | + | chr3.3:95790985-95791004 | None:intergenic | 30.0% | |
| TGAAAATTAAGTATGGAGTG+TGG | + | chr3.3:95790417-95790436 | None:intergenic | 30.0% | |
| ! | CTACACTTTTCATTTCTATG+TGG | - | chr3.3:95790775-95790794 | MS.gene063093:CDS | 30.0% |
| !!! | AGTTTTTTAGGGTTTCTCTT+GGG | + | chr3.3:95790031-95790050 | None:intergenic | 30.0% |
| !!! | GGTGGAGTCTATTTTTATAA+TGG | - | chr3.3:95789870-95789889 | MS.gene063093:CDS | 30.0% |
| AAAAAAGTCTCAAACTCCAC+AGG | + | chr3.3:95791232-95791251 | None:intergenic | 35.0% | |
| AAGAACAATATCACCAGCAA+TGG | + | chr3.3:95790510-95790529 | None:intergenic | 35.0% | |
| ACTCAAGACGCTAACAAATA+CGG | - | chr3.3:95790345-95790364 | MS.gene063093:CDS | 35.0% | |
| ATAGAAAAATGTGCCTGCAT+TGG | - | chr3.3:95789952-95789971 | MS.gene063093:CDS | 35.0% | |
| GAAATGGATGATCAGTATGA+AGG | - | chr3.3:95790727-95790746 | MS.gene063093:CDS | 35.0% | |
| GAAATTCAAGAGAAGAAGAG+AGG | - | chr3.3:95790287-95790306 | MS.gene063093:intron | 35.0% | |
| TACATTACTTACATTCGGGT+CGG | + | chr3.3:95789698-95789717 | None:intergenic | 35.0% | |
| TCTTAACAAGACCAACATCA+AGG | + | chr3.3:95790893-95790912 | None:intergenic | 35.0% | |
| TCTTATATTACTCAGGCAAC+CGG | - | chr3.3:95790816-95790835 | MS.gene063093:intron | 35.0% | |
| TGAAAAAGTTGTACTGCTTG+AGG | - | chr3.3:95789842-95789861 | MS.gene063093:CDS | 35.0% | |
| TTACCAATCGAACAACGTAA+CGG | + | chr3.3:95790383-95790402 | None:intergenic | 35.0% | |
| TTCAGTGAATATATCAAGCG+TGG | - | chr3.3:95791321-95791340 | MS.gene063093:intron | 35.0% | |
| TTGAGTAATCAAACGAACTC+TGG | + | chr3.3:95790331-95790350 | None:intergenic | 35.0% | |
| TTGTACTCAAGTCGTTAATG+AGG | + | chr3.3:95789766-95789785 | None:intergenic | 35.0% | |
| ! | TACTATTGATGATTGGCAAG+TGG | - | chr3.3:95791480-95791499 | MS.gene063093:intron | 35.0% |
| !! | AACACAAGAGGTATCACATT+AGG | - | chr3.3:95791442-95791461 | MS.gene063093:intron | 35.0% |
| !! | ATCTTCCGGTTTTTAGAGAA+AGG | - | chr3.3:95789653-95789672 | MS.gene063093:CDS | 35.0% |
| !! | TATAATGGATGGAGTGGATT+GGG | - | chr3.3:95789885-95789904 | MS.gene063093:CDS | 35.0% |
| !! | TCTTCCGGTTTTTAGAGAAA+GGG | - | chr3.3:95789654-95789673 | MS.gene063093:CDS | 35.0% |
| !! | TTATAATGGATGGAGTGGAT+TGG | - | chr3.3:95789884-95789903 | MS.gene063093:CDS | 35.0% |
| !! | TTCACCGGAAGTACATTTTT+GGG | - | chr3.3:95791121-95791140 | MS.gene063093:CDS | 35.0% |
| !! | TTCTCAGGCTTTTTGATTGA+GGG | + | chr3.3:95791408-95791427 | None:intergenic | 35.0% |
| !!! | GAGTTTTTTAGGGTTTCTCT+TGG | + | chr3.3:95790032-95790051 | None:intergenic | 35.0% |
| ACAAGAATAGAGGACATAGG+TGG | + | chr3.3:95790975-95790994 | None:intergenic | 40.0% | |
| ACATGTTGCTGCCTATATGA+AGG | - | chr3.3:95791146-95791165 | MS.gene063093:CDS | 40.0% | |
| AGTTGTACTGCTTGAGGAAA+AGG | - | chr3.3:95789848-95789867 | MS.gene063093:CDS | 40.0% | |
| ATACCGTTACGTTGTTCGAT+TGG | - | chr3.3:95790377-95790396 | MS.gene063093:CDS | 40.0% | |
| ATATTCCTCACAGCGACAAA+AGG | - | chr3.3:95791055-95791074 | MS.gene063093:intron | 40.0% | |
| ATGTTACCAGCTTATTGCAC+TGG | - | chr3.3:95790670-95790689 | MS.gene063093:intron | 40.0% | |
| CAAGAATAGAGGACATAGGT+GGG | + | chr3.3:95790974-95790993 | None:intergenic | 40.0% | |
| CATAGTTAGTAAGGCCTACA+TGG | + | chr3.3:95790571-95790590 | None:intergenic | 40.0% | |
| CGAACAACGTAACGGTATTT+GGG | + | chr3.3:95790375-95790394 | None:intergenic | 40.0% | |
| GAAAAAAGAGCTTGATGCTG+AGG | - | chr3.3:95791098-95791117 | MS.gene063093:intron | 40.0% | |
| GTCACAAGAATAGAGGACAT+AGG | + | chr3.3:95790978-95790997 | None:intergenic | 40.0% | |
| GTTGTACTGCTTGAGGAAAA+GGG | - | chr3.3:95789849-95789868 | MS.gene063093:CDS | 40.0% | |
| TAATCAAACGAACTCTGGCT+CGG | + | chr3.3:95790326-95790345 | None:intergenic | 40.0% | |
| TACCTGCAGCATAGTTAGTA+AGG | + | chr3.3:95790580-95790599 | None:intergenic | 40.0% | |
| TATCAAGCGTGGAATTGAAG+CGG | - | chr3.3:95791332-95791351 | MS.gene063093:intron | 40.0% | |
| TCAGTATGAAGGCAATGTTG+AGG | - | chr3.3:95790738-95790757 | MS.gene063093:CDS | 40.0% | |
| TCGAACAACGTAACGGTATT+TGG | + | chr3.3:95790376-95790395 | None:intergenic | 40.0% | |
| TGATACCTCTTGTGTTCCTT+TGG | + | chr3.3:95791438-95791457 | None:intergenic | 40.0% | |
| TTCCACAGAATAATCCTCTC+CGG | + | chr3.3:95790838-95790857 | None:intergenic | 40.0% | |
| ! | ATCCCCCTTTCTCTAAAAAC+CGG | + | chr3.3:95789661-95789680 | None:intergenic | 40.0% |
| ! | GTTGATTCAGGCATTTGTGA+AGG | - | chr3.3:95790227-95790246 | MS.gene063093:intron | 40.0% |
| ! | TTTGTAAGGCATTCATCCTG+TGG | - | chr3.3:95791213-95791232 | MS.gene063093:intron | 40.0% |
| !! | ATAATGGATGGAGTGGATTG+GGG | - | chr3.3:95789886-95789905 | MS.gene063093:CDS | 40.0% |
| !! | CTTCCGGTTTTTAGAGAAAG+GGG | - | chr3.3:95789655-95789674 | MS.gene063093:CDS | 40.0% |
| !! | CTTCTCAGGCTTTTTGATTG+AGG | + | chr3.3:95791409-95791428 | None:intergenic | 40.0% |
| !! | GTTCACCGGAAGTACATTTT+TGG | - | chr3.3:95791120-95791139 | MS.gene063093:CDS | 40.0% |
| !! | TCACCGGAAGTACATTTTTG+GGG | - | chr3.3:95791122-95791141 | MS.gene063093:CDS | 40.0% |
| !! | TTATTGCACTGGTCTCCTTT+TGG | - | chr3.3:95790681-95790700 | MS.gene063093:CDS | 40.0% |
| !! | TTCCGGTTTTTAGAGAAAGG+GGG | - | chr3.3:95789656-95789675 | MS.gene063093:CDS | 40.0% |
| !! | TTTTTAGAGAAAGGGGGATC+TGG | - | chr3.3:95789662-95789681 | MS.gene063093:CDS | 40.0% |
| !!! | AAGGTTTGCTGGTTTTGACA+AGG | - | chr3.3:95791074-95791093 | MS.gene063093:intron | 40.0% |
| AACCGGAGAGGATTATTCTG+TGG | - | chr3.3:95790833-95790852 | MS.gene063093:intron | 45.0% | |
| AATTGAAGCGGATGGAATCG+AGG | - | chr3.3:95791344-95791363 | MS.gene063093:intron | 45.0% | |
| AGTGTCCACATAAAGTGACG+AGG | - | chr3.3:95789988-95790007 | MS.gene063093:intron | 45.0% | |
| AGTTAGTAAGGCCTACATGG+AGG | + | chr3.3:95790568-95790587 | None:intergenic | 45.0% | |
| ATTGTCTCTGCTACCATTGC+TGG | - | chr3.3:95790494-95790513 | MS.gene063093:intron | 45.0% | |
| GTACCATTCCGATTCCGAAT+GGG | + | chr3.3:95790146-95790165 | None:intergenic | 45.0% | |
| GTCCCCCAAAAATGTACTTC+CGG | + | chr3.3:95791128-95791147 | None:intergenic | 45.0% | |
| TACCTCTTGTGTTCCTTTGG+TGG | + | chr3.3:95791435-95791454 | None:intergenic | 45.0% | |
| ! | AATCGGGTTTGTTTGGCTTC+AGG | - | chr3.3:95791011-95791030 | MS.gene063093:CDS | 45.0% |
| ! | ATCGGGTTTGTTTGGCTTCA+GGG | - | chr3.3:95791012-95791031 | MS.gene063093:CDS | 45.0% |
| !! | CACCGGAAGTACATTTTTGG+GGG | - | chr3.3:95791123-95791142 | MS.gene063093:CDS | 45.0% |
| !! | TAATGGATGGAGTGGATTGG+GGG | - | chr3.3:95789887-95789906 | MS.gene063093:CDS | 45.0% |
| AAGCGTGGAATTGAAGCGGA+TGG | - | chr3.3:95791336-95791355 | MS.gene063093:intron | 50.0% | |
| AGCCACCAAAGGAACACAAG+AGG | - | chr3.3:95791430-95791449 | MS.gene063093:intron | 50.0% | |
| AGCTTGATGCTGAGGTTCAC+CGG | - | chr3.3:95791106-95791125 | MS.gene063093:intron | 50.0% | |
| AGGAGACCAGTGCAATAAGC+TGG | + | chr3.3:95790679-95790698 | None:intergenic | 50.0% | |
| CACAGCGACAAAAGGTTTGC+TGG | - | chr3.3:95791063-95791082 | MS.gene063093:intron | 50.0% | |
| CGTACCATTCCGATTCCGAA+TGG | + | chr3.3:95790147-95790166 | None:intergenic | 50.0% | |
| GACCAACATCAAGGAGAGCA+CGG | + | chr3.3:95790884-95790903 | None:intergenic | 50.0% | |
| GATTGAGGGATCTGCACGAA+TGG | + | chr3.3:95791394-95791413 | None:intergenic | 50.0% | |
| GCACATGAGCTTCCTCACTT+TGG | - | chr3.3:95790542-95790561 | MS.gene063093:CDS | 50.0% | |
| GGCCTTACTAACTATGCTGC+AGG | - | chr3.3:95790575-95790594 | MS.gene063093:CDS | 50.0% | |
| GTACTGCTTGAGGAAAAGGG+TGG | - | chr3.3:95789852-95789871 | MS.gene063093:CDS | 50.0% | |
| TAAGAACTCGGCGAGCCAAA+AGG | + | chr3.3:95790699-95790718 | None:intergenic | 50.0% | |
| TATTACTCAGGCAACCGGAG+AGG | - | chr3.3:95790821-95790840 | MS.gene063093:intron | 50.0% | |
| TTAAGACCACCACCGGAAAC+CGG | - | chr3.3:95790907-95790926 | MS.gene063093:CDS | 50.0% | |
| TTCCGTGCTCTCCTTGATGT+TGG | - | chr3.3:95790879-95790898 | MS.gene063093:CDS | 50.0% | |
| ! | ACATCAAGGAGAGCACGGAA+TGG | + | chr3.3:95790879-95790898 | None:intergenic | 50.0% |
| ! | GCAAACCTTTTGTCGCTGTG+AGG | + | chr3.3:95791063-95791082 | None:intergenic | 50.0% |
| ! | TGTTTGGCTTCAGGGAGCTT+TGG | - | chr3.3:95791020-95791039 | MS.gene063093:intron | 50.0% |
| !! | AATGGATGGAGTGGATTGGG+GGG | - | chr3.3:95789888-95789907 | MS.gene063093:CDS | 50.0% |
| !! | GGTCTTGTTAAGACCACCAC+CGG | - | chr3.3:95790900-95790919 | MS.gene063093:CDS | 50.0% |
| !!! | CTGCTGCTTTTCTCCAATGC+AGG | + | chr3.3:95789968-95789987 | None:intergenic | 50.0% |
| ACCCACCACCCATTCGGAAT+CGG | - | chr3.3:95790135-95790154 | MS.gene063093:CDS | 55.0% | |
| CATAAAGTGACGAGGCCCGT+AGG | - | chr3.3:95789996-95790015 | MS.gene063093:intron | 55.0% | |
| CCAATCACCCACCACCCATT+CGG | - | chr3.3:95790129-95790148 | MS.gene063093:CDS | 55.0% | |
| CCACCCATTCGGAATCGGAA+TGG | - | chr3.3:95790140-95790159 | MS.gene063093:CDS | 55.0% | |
| CCATTCCGATTCCGAATGGG+TGG | + | chr3.3:95790143-95790162 | None:intergenic | 55.0% | |
| CCTACATGGAGGCCAAAGTG+AGG | + | chr3.3:95790557-95790576 | None:intergenic | 55.0% | |
| CCTCACTTTGGCCTCCATGT+AGG | - | chr3.3:95790554-95790573 | MS.gene063093:CDS | 55.0% | |
| CCTTGAGTGCACCAAAGACC+CGG | + | chr3.3:95790929-95790948 | None:intergenic | 55.0% | |
| CTTACATTCGGGTCGGACTC+TGG | + | chr3.3:95789691-95789710 | None:intergenic | 55.0% | |
| GCGTTGTTTGTCTTCCGAGC+AGG | - | chr3.3:95791602-95791621 | MS.gene063093:CDS | 55.0% | |
| TAAGACCACCACCGGAAACC+GGG | - | chr3.3:95790908-95790927 | MS.gene063093:CDS | 55.0% | |
| TCCGATTCCGAATGGGTGGT+GGG | + | chr3.3:95790139-95790158 | None:intergenic | 55.0% | |
| TCTTGGGCTGCCTTTGCCTA+CGG | + | chr3.3:95790015-95790034 | None:intergenic | 55.0% | |
| TGCACCAAAGACCCGGTTTC+CGG | + | chr3.3:95790922-95790941 | None:intergenic | 55.0% | |
| TTCCGATTCCGAATGGGTGG+TGG | + | chr3.3:95790140-95790159 | None:intergenic | 55.0% | |
| ! | ACGGGCCTCGTCACTTTATG+TGG | + | chr3.3:95789996-95790015 | None:intergenic | 55.0% |
| ! | TCCTTTGGTGGCTGCTTCTC+AGG | + | chr3.3:95791423-95791442 | None:intergenic | 55.0% |
| !! | ATGGATGGAGTGGATTGGGG+GGG | - | chr3.3:95789889-95789908 | MS.gene063093:CDS | 55.0% |
| !! | TGGCTTCAGGGAGCTTTGGA+CGG | - | chr3.3:95791024-95791043 | MS.gene063093:intron | 55.0% |
| AAAGACCCGGTTTCCGGTGG+TGG | + | chr3.3:95790916-95790935 | None:intergenic | 60.0% | |
| AATGGCCTCCTGGAGTCAGC+TGG | + | chr3.3:95790861-95790880 | None:intergenic | 60.0% | |
| ACCAAAGACCCGGTTTCCGG+TGG | + | chr3.3:95790919-95790938 | None:intergenic | 60.0% | |
| ACCACCGGAAACCGGGTCTT+TGG | - | chr3.3:95790915-95790934 | MS.gene063093:CDS | 60.0% | |
| CTTGGGCTGCCTTTGCCTAC+GGG | + | chr3.3:95790014-95790033 | None:intergenic | 60.0% | |
| GCCTGAGAAGCAGCCACCAA+AGG | - | chr3.3:95791419-95791438 | MS.gene063093:intron | 60.0% | |
| TTCTCTGCACCAGACAGCCG+CGG | - | chr3.3:95790089-95790108 | MS.gene063093:intron | 60.0% | |
| ! | CCGGGTCTTTGGTGCACTCA+AGG | - | chr3.3:95790926-95790945 | MS.gene063093:CDS | 60.0% |
| ! | CTGTGGAACCAGCTGACTCC+AGG | - | chr3.3:95790850-95790869 | MS.gene063093:intron | 60.0% |
| ! | TGGAACCAGCTGACTCCAGG+AGG | - | chr3.3:95790853-95790872 | MS.gene063093:intron | 60.0% |
| !! | CCGAATGGGTGGTGGGTGAT+TGG | + | chr3.3:95790132-95790151 | None:intergenic | 60.0% |
| !! | CTTCAGGGAGCTTTGGACGG+GGG | - | chr3.3:95791027-95791046 | MS.gene063093:intron | 60.0% |
| !! | GCTTCAGGGAGCTTTGGACG+GGG | - | chr3.3:95791026-95791045 | MS.gene063093:intron | 60.0% |
| !! | GGCTTCAGGGAGCTTTGGAC+GGG | - | chr3.3:95791025-95791044 | MS.gene063093:intron | 60.0% |
| !! | TGGATGGAGTGGATTGGGGG+GGG | - | chr3.3:95789890-95789909 | MS.gene063093:CDS | 60.0% |
| GTGACGAGGCCCGTAGGCAA+AGG | - | chr3.3:95790002-95790021 | MS.gene063093:intron | 65.0% | |
| ! | GAGAGCACGGAATGGCCTCC+TGG | + | chr3.3:95790871-95790890 | None:intergenic | 65.0% |
| !! | ATGGAGTGGATTGGGGGGGG+GGG | - | chr3.3:95789893-95789912 | MS.gene063093:CDS | 65.0% |
| !! | GATGGAGTGGATTGGGGGGG+GGG | - | chr3.3:95789892-95789911 | MS.gene063093:CDS | 65.0% |
| !! | GGATGGAGTGGATTGGGGGG+GGG | - | chr3.3:95789891-95789910 | MS.gene063093:CDS | 65.0% |
| ACTGCCCGCACCTTCGACCG+CGG | + | chr3.3:95790109-95790128 | None:intergenic | 70.0% | |
| CACCAGACAGCCGCGGTCGA+AGG | - | chr3.3:95790096-95790115 | MS.gene063093:intron | 70.0% | |
| CACCTTCGACCGCGGCTGTC+TGG | + | chr3.3:95790101-95790120 | None:intergenic | 70.0% | |
| GACAGCCGCGGTCGAAGGTG+CGG | - | chr3.3:95790101-95790120 | MS.gene063093:intron | 70.0% | |
| ! | ACAGCCGCGGTCGAAGGTGC+GGG | - | chr3.3:95790102-95790121 | MS.gene063093:intron | 70.0% |
| !! | GGGAGCTTTGGACGGGGGTC+TGG | - | chr3.3:95791032-95791051 | MS.gene063093:intron | 70.0% |
| !! | TGGAGTGGATTGGGGGGGGG+GGG | - | chr3.3:95789894-95789913 | MS.gene063093:CDS | 70.0% |
| !! | AGTGGATTGGGGGGGGGGGG+GGG | - | chr3.3:95789897-95789916 | MS.gene063093:CDS | 75.0% |
| !! | GAGTGGATTGGGGGGGGGGG+GGG | - | chr3.3:95789896-95789915 | MS.gene063093:CDS | 75.0% |
| !! | GGAGTGGATTGGGGGGGGGG+GGG | - | chr3.3:95789895-95789914 | MS.gene063093:CDS | 75.0% |
| !! | TGGATTGGGGGGGGGGGGGG+GGG | - | chr3.3:95789899-95789918 | MS.gene063093:CDS | 80.0% |
| !!! | GTGGATTGGGGGGGGGGGGG+GGG | - | chr3.3:95789898-95789917 | MS.gene063093:CDS | 80.0% |
| ! | ATTGGGGGGGGGGGGGGGGG+GGG | - | chr3.3:95789902-95789921 | MS.gene063093:CDS | 85.0% |
| ! | GATTGGGGGGGGGGGGGGGG+GGG | - | chr3.3:95789901-95789920 | MS.gene063093:CDS | 85.0% |
| ! | GGATTGGGGGGGGGGGGGGG+GGG | - | chr3.3:95789900-95789919 | MS.gene063093:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 95789640 | 95791634 | 95789640 | ID=MS.gene063093 |
| chr3.3 | mRNA | 95789640 | 95791634 | 95789640 | ID=MS.gene063093.t1;Parent=MS.gene063093 |
| chr3.3 | exon | 95791569 | 95791634 | 95791569 | ID=MS.gene063093.t1.exon1;Parent=MS.gene063093.t1 |
| chr3.3 | CDS | 95791569 | 95791634 | 95791569 | ID=cds.MS.gene063093.t1;Parent=MS.gene063093.t1 |
| chr3.3 | exon | 95791113 | 95791172 | 95791113 | ID=MS.gene063093.t1.exon2;Parent=MS.gene063093.t1 |
| chr3.3 | CDS | 95791113 | 95791172 | 95791113 | ID=cds.MS.gene063093.t1;Parent=MS.gene063093.t1 |
| chr3.3 | exon | 95790876 | 95791037 | 95790876 | ID=MS.gene063093.t1.exon3;Parent=MS.gene063093.t1 |
| chr3.3 | CDS | 95790876 | 95791037 | 95790876 | ID=cds.MS.gene063093.t1;Parent=MS.gene063093.t1 |
| chr3.3 | exon | 95790678 | 95790804 | 95790678 | ID=MS.gene063093.t1.exon4;Parent=MS.gene063093.t1 |
| chr3.3 | CDS | 95790678 | 95790804 | 95790678 | ID=cds.MS.gene063093.t1;Parent=MS.gene063093.t1 |
| chr3.3 | exon | 95790515 | 95790594 | 95790515 | ID=MS.gene063093.t1.exon5;Parent=MS.gene063093.t1 |
| chr3.3 | CDS | 95790515 | 95790594 | 95790515 | ID=cds.MS.gene063093.t1;Parent=MS.gene063093.t1 |
| chr3.3 | exon | 95790327 | 95790443 | 95790327 | ID=MS.gene063093.t1.exon6;Parent=MS.gene063093.t1 |
| chr3.3 | CDS | 95790327 | 95790443 | 95790327 | ID=cds.MS.gene063093.t1;Parent=MS.gene063093.t1 |
| chr3.3 | exon | 95790107 | 95790241 | 95790107 | ID=MS.gene063093.t1.exon7;Parent=MS.gene063093.t1 |
| chr3.3 | CDS | 95790107 | 95790241 | 95790107 | ID=cds.MS.gene063093.t1;Parent=MS.gene063093.t1 |
| chr3.3 | exon | 95789823 | 95789992 | 95789823 | ID=MS.gene063093.t1.exon8;Parent=MS.gene063093.t1 |
| chr3.3 | CDS | 95789823 | 95789992 | 95789823 | ID=cds.MS.gene063093.t1;Parent=MS.gene063093.t1 |
| chr3.3 | exon | 95789640 | 95789691 | 95789640 | ID=MS.gene063093.t1.exon9;Parent=MS.gene063093.t1 |
| chr3.3 | CDS | 95789640 | 95789691 | 95789640 | ID=cds.MS.gene063093.t1;Parent=MS.gene063093.t1 |
| Gene Sequence |
| Protein sequence |
