Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063275.t1 | KEH20992.1 | 97.3 | 663 | 13 | 1 | 65 | 722 | 66 | 728 | 0.00E+00 | 1287.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063275.t1 | F4JRS4 | 70.0 | 496 | 131 | 6 | 70 | 559 | 86 | 569 | 9.2e-201 | 701.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063275.t1 | A0A072TU88 | 97.3 | 663 | 13 | 1 | 65 | 722 | 66 | 728 | 0.0e+00 | 1287.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene063275 | 0.811609 | 6.43E-51 | -1.69E-46 |
| MS.gene050439 | MS.gene063275 | 0.804254 | 2.36E-49 | -1.69E-46 |
| MS.gene050654 | MS.gene063275 | 0.801147 | 1.03E-48 | -1.69E-46 |
| MS.gene052434 | MS.gene063275 | 0.807822 | 4.19E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene063275 | 0.810897 | 9.17E-51 | -1.69E-46 |
| MS.gene055311 | MS.gene063275 | 0.820804 | 5.65E-53 | -1.69E-46 |
| MS.gene055313 | MS.gene063275 | 0.839206 | 1.82E-57 | -1.69E-46 |
| MS.gene055314 | MS.gene063275 | 0.818006 | 2.46E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene063275 | 0.812309 | 4.52E-51 | -1.69E-46 |
| MS.gene055864 | MS.gene063275 | 0.842402 | 2.64E-58 | -1.69E-46 |
| MS.gene056181 | MS.gene063275 | 0.804626 | 1.97E-49 | -1.69E-46 |
| MS.gene057360 | MS.gene063275 | 0.810098 | 1.36E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene063275 | 0.828052 | 1.11E-54 | -1.69E-46 |
| MS.gene058289 | MS.gene063275 | 0.818379 | 2.02E-52 | -1.69E-46 |
| MS.gene058758 | MS.gene063275 | 0.811994 | 5.30E-51 | -1.69E-46 |
| MS.gene059170 | MS.gene063275 | 0.811368 | 7.25E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063275.t1 | MTR_8g096410 | 96.380 | 801 | 23 | 2 | 1 | 795 | 1 | 801 | 0.0 | 1526 |
| MS.gene063275.t1 | MTR_8g096410 | 93.633 | 801 | 22 | 3 | 1 | 795 | 1 | 778 | 0.0 | 1468 |
| MS.gene063275.t1 | MTR_8g096410 | 93.383 | 801 | 22 | 3 | 1 | 795 | 1 | 776 | 0.0 | 1464 |
| MS.gene063275.t1 | MTR_8g096410 | 92.884 | 801 | 22 | 3 | 1 | 795 | 1 | 772 | 0.0 | 1455 |
| MS.gene063275.t1 | MTR_3g077540 | 50.691 | 434 | 195 | 10 | 123 | 552 | 97 | 515 | 1.81e-135 | 417 |
| MS.gene063275.t1 | MTR_4g105530 | 42.266 | 556 | 260 | 18 | 122 | 664 | 90 | 597 | 8.53e-125 | 390 |
| MS.gene063275.t1 | MTR_8g076590 | 46.133 | 362 | 173 | 6 | 213 | 567 | 1 | 347 | 7.31e-108 | 340 |
| MS.gene063275.t1 | MTR_8g076580 | 61.728 | 81 | 31 | 0 | 123 | 203 | 55 | 135 | 7.41e-28 | 109 |
| MS.gene063275.t1 | MTR_5g024810 | 25.600 | 500 | 290 | 20 | 89 | 557 | 120 | 568 | 1.31e-22 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063275.t1 | AT5G50780 | 52.709 | 812 | 293 | 14 | 26 | 795 | 25 | 787 | 0.0 | 780 |
| MS.gene063275.t1 | AT5G50780 | 51.753 | 827 | 293 | 15 | 26 | 795 | 25 | 802 | 0.0 | 771 |
| MS.gene063275.t1 | AT4G24970 | 70.140 | 499 | 125 | 6 | 70 | 559 | 86 | 569 | 0.0 | 721 |
| MS.gene063275.t1 | AT5G50780 | 54.502 | 633 | 218 | 9 | 192 | 795 | 1 | 592 | 0.0 | 651 |
| MS.gene063275.t1 | AT5G13130 | 47.585 | 704 | 286 | 13 | 120 | 812 | 73 | 704 | 0.0 | 614 |
| MS.gene063275.t1 | AT5G13130 | 59.129 | 482 | 165 | 6 | 120 | 572 | 73 | 551 | 0.0 | 592 |
| MS.gene063275.t1 | AT4G36290 | 49.195 | 435 | 208 | 6 | 122 | 554 | 58 | 481 | 1.34e-142 | 436 |
| MS.gene063275.t1 | AT1G19100 | 49.885 | 435 | 202 | 7 | 122 | 556 | 86 | 504 | 3.82e-142 | 436 |
| MS.gene063275.t1 | AT4G36280 | 49.078 | 434 | 206 | 7 | 122 | 552 | 50 | 471 | 1.35e-140 | 430 |
| MS.gene063275.t1 | AT4G36270 | 43.681 | 364 | 153 | 9 | 212 | 554 | 1 | 333 | 2.47e-88 | 289 |
Find 178 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACATCATATTGATGTTTC+AGG | 0.166512 | 4.2:+7183204 | MS.gene063275:CDS |
| TTAAGGGTTGTAAGCAGTTT+TGG | 0.256234 | 4.2:+7179133 | MS.gene063275:CDS |
| GTCTTTGCCTGCGCCGGAAT+GGG | 0.273806 | 4.2:+7179068 | MS.gene063275:CDS |
| GCTTCTGAGTGGTGCATCTA+TGG | 0.274397 | 4.2:+7187268 | MS.gene063275:CDS |
| GAGAAGAAAGAGGAAGAAAT+AGG | 0.291504 | 4.2:+7185418 | MS.gene063275:CDS |
| AAGTGTTAGCTTTAGTCTTA+AGG | 0.295181 | 4.2:+7179116 | MS.gene063275:CDS |
| TCTTCTTTGTCTTCTTCTTT+CGG | 0.295574 | 4.2:-7178824 | None:intergenic |
| CTGTTCTAGAGATGATAAAT+TGG | 0.331733 | 4.2:-7185250 | None:intergenic |
| TACAAATGCAGAAAACTTAC+TGG | 0.338578 | 4.2:+7183886 | MS.gene063275:CDS |
| TGTCTTTGCCTGCGCCGGAA+TGG | 0.339469 | 4.2:+7179067 | MS.gene063275:CDS |
| GGAGCTAACTGCGATAAAAT+TGG | 0.343638 | 4.2:+7184010 | MS.gene063275:CDS |
| TCTAGTGCTGGAAAGTCATT+TGG | 0.345463 | 4.2:+7184421 | MS.gene063275:CDS |
| GGGTAATTATATACAATCTC+TGG | 0.353194 | 4.2:+7182374 | MS.gene063275:CDS |
| AGTGTTAGCTTTAGTCTTAA+GGG | 0.357857 | 4.2:+7179117 | MS.gene063275:CDS |
| AGAGATGATAAATTGGCTAT+TGG | 0.364119 | 4.2:-7185243 | None:intergenic |
| GATTGAGATGATTCTGGAAC+AGG | 0.365934 | 4.2:-7184166 | None:intergenic |
| TTCAGCCATTCTGGAGGATC+TGG | 0.376798 | 4.2:+7183656 | MS.gene063275:intron |
| AGGTCGGCCTCATCAGAAAA+TGG | 0.381078 | 4.2:-7182166 | None:intergenic |
| CCTTGTTAACTGCATTCATT+TGG | 0.383595 | 4.2:+7187246 | MS.gene063275:CDS |
| ATCTAAATCAACATCGGAAT+CGG | 0.397122 | 4.2:-7178899 | None:intergenic |
| CAGTTGGTATGGATCATGTC+AGG | 0.399359 | 4.2:+7179740 | MS.gene063275:intron |
| AAGTTTGAGAAAGAAGCTTC+AGG | 0.402778 | 4.2:+7186678 | MS.gene063275:CDS |
| GAAAGATAAGTGCAAATCTC+TGG | 0.403187 | 4.2:+7185468 | MS.gene063275:CDS |
| AGTTAAGAAGTGAGTAGAGT+TGG | 0.406267 | 4.2:-7182605 | None:intergenic |
| AGTGGTGGCCGTGGGGTCAT+AGG | 0.407424 | 4.2:+7183691 | MS.gene063275:CDS |
| CTTTCCCACGAAGAATAATT+CGG | 0.409523 | 4.2:-7182965 | None:intergenic |
| AGCAAGATGGCAAATACAAT+TGG | 0.421977 | 4.2:+7180749 | MS.gene063275:CDS |
| TCCTGTTGTCAAGGAAAAGA+TGG | 0.427027 | 4.2:+7180918 | MS.gene063275:CDS |
| TAACCTTCTCAAGCAGCTCT+TGG | 0.427108 | 4.2:-7187171 | None:intergenic |
| CCAGCAGGAAGTGGTGGCCG+TGG | 0.429566 | 4.2:+7183682 | MS.gene063275:CDS |
| TGTAAAATCTGCAGTTGGTA+TGG | 0.432769 | 4.2:+7179729 | MS.gene063275:intron |
| TTCGATGTAGAAGCCCATTC+CGG | 0.434024 | 4.2:-7179081 | None:intergenic |
| CCCTAAATACCTGGCTAAGA+AGG | 0.442608 | 4.2:-7182186 | None:intergenic |
| ACAAGTCATAAGTGGGCTCT+TGG | 0.442932 | 4.2:+7179793 | MS.gene063275:CDS |
| CATTAGAATGTAGAAACTTC+GGG | 0.444015 | 4.2:-7179768 | None:intergenic |
| CCACGGCCACCACTTCCTGC+TGG | 0.444540 | 4.2:-7183682 | None:intergenic |
| TTCGACTATCACCCTTTGCT+TGG | 0.448771 | 4.2:-7184393 | None:intergenic |
| TTCCGATGTTGATTTAGATT+CGG | 0.450695 | 4.2:+7178903 | MS.gene063275:CDS |
| AACATCATATTGATGTTTCA+GGG | 0.452962 | 4.2:+7183205 | MS.gene063275:CDS |
| GTTCTGCTGGTAAAGGTTTG+AGG | 0.453189 | 4.2:+7184068 | MS.gene063275:CDS |
| AAAAGAGAATCACGAGTTGA+AGG | 0.455380 | 4.2:+7185278 | MS.gene063275:CDS |
| CTGAGTTCGATGACCGAGTC+AGG | 0.456678 | 4.2:-7178871 | None:intergenic |
| TCCAGGATGCTGCTAGTAGA+AGG | 0.456812 | 4.2:+7180114 | MS.gene063275:CDS |
| AAGCCTTGCTTGTCATGGGC+AGG | 0.460834 | 4.2:-7183822 | None:intergenic |
| ATGATTGTTCTGATGAACTT+TGG | 0.471626 | 4.2:-7184321 | None:intergenic |
| AACGGTAGTTCTGCTGGTAA+AGG | 0.471738 | 4.2:+7184061 | MS.gene063275:CDS |
| AAAACAAGTACCATGAGGCT+TGG | 0.472120 | 4.2:+7180876 | MS.gene063275:CDS |
| GATGATTCTGGAACAGGATC+GGG | 0.472289 | 4.2:-7184160 | None:intergenic |
| AATACGTCAATGCATGTCAC+TGG | 0.472415 | 4.2:+7180712 | MS.gene063275:CDS |
| GTTAAGAAGTGAGTAGAGTT+GGG | 0.473939 | 4.2:-7182604 | None:intergenic |
| GCGTCGACGCCTGTCAATAA+TGG | 0.474195 | 4.2:+7179039 | MS.gene063275:CDS |
| CCTCAATCTGGAGTTGCTGA+TGG | 0.476860 | 4.2:+7183047 | MS.gene063275:CDS |
| AAGGAAGTCTTCAAGTCAAA+TGG | 0.478030 | 4.2:+7187204 | MS.gene063275:CDS |
| TTCAGATAACGGCGGTGGGA+TGG | 0.482461 | 4.2:+7180679 | MS.gene063275:intron |
| GGAGGATGACCAAGGTCAGC+TGG | 0.482744 | 4.2:+7182396 | MS.gene063275:CDS |
| GAGTAGAGTTGGGATAATCT+TGG | 0.482817 | 4.2:-7182594 | None:intergenic |
| GTCACGTACAGACCTCAATC+TGG | 0.483714 | 4.2:+7183035 | MS.gene063275:CDS |
| GTTCAAAGCCTTGCTTGTCA+TGG | 0.485219 | 4.2:-7183827 | None:intergenic |
| TTCGGTTGTTGCTGCCGCTA+CGG | 0.486910 | 4.2:+7178921 | MS.gene063275:CDS |
| AGTTGCTGATGGGCTTCTAA+AGG | 0.487290 | 4.2:+7183058 | MS.gene063275:CDS |
| ACCTTCTACTAGCAGCATCC+TGG | 0.488031 | 4.2:-7180115 | None:intergenic |
| AGTAGAGTTGGGATAATCTT+GGG | 0.488491 | 4.2:-7182593 | None:intergenic |
| AGATACAGTGAACACAGAAA+TGG | 0.489155 | 4.2:+7184283 | MS.gene063275:CDS |
| TGGTGCATCTATGGTGGCAT+TGG | 0.489972 | 4.2:+7187277 | MS.gene063275:CDS |
| GGTGCATCTATGGTGGCATT+GGG | 0.494625 | 4.2:+7187278 | MS.gene063275:CDS |
| CAGAATCATCTCAATCGAAA+AGG | 0.495570 | 4.2:+7184173 | MS.gene063275:CDS |
| TCTTGCTCCTTCTCCTTCTC+CGG | 0.497329 | 4.2:+7179017 | MS.gene063275:CDS |
| ATGGGCAGGTTCAACAAAGT+TGG | 0.498194 | 4.2:-7183808 | None:intergenic |
| CAATGATATGATGTATTCTC+AGG | 0.500460 | 4.2:+7183010 | MS.gene063275:CDS |
| CTAGTGCTGGAAAGTCATTT+GGG | 0.501062 | 4.2:+7184422 | MS.gene063275:CDS |
| AAGCAAAACGGTAGTTCTGC+TGG | 0.501216 | 4.2:+7184055 | MS.gene063275:CDS |
| AGGAAAAGTTCCGCTACAAA+TGG | 0.501812 | 4.2:+7184193 | MS.gene063275:CDS |
| GGTTTCCGAATTATTCTTCG+TGG | 0.503402 | 4.2:+7182960 | MS.gene063275:CDS |
| TTCAAAGCCTTGCTTGTCAT+GGG | 0.504131 | 4.2:-7183826 | None:intergenic |
| CTTCATGTGATAGATGGAAA+TGG | 0.504512 | 4.2:+7180849 | MS.gene063275:intron |
| GTAGAAGCCCATTCCGGCGC+AGG | 0.505036 | 4.2:-7179075 | None:intergenic |
| GCATTAGAATGTAGAAACTT+CGG | 0.511635 | 4.2:-7179769 | None:intergenic |
| ATTTGTATTTACAGGTGTGT+TGG | 0.512149 | 4.2:+7183782 | MS.gene063275:intron |
| GACAAAACACCATTATTGAC+AGG | 0.513798 | 4.2:-7179048 | None:intergenic |
| TTTCAGGATATTCAAATACA+AGG | 0.515733 | 4.2:+7182538 | MS.gene063275:intron |
| CGAGTAAGAAAGATGGCTCC+AGG | 0.517005 | 4.2:+7180097 | MS.gene063275:CDS |
| AGATGATTCTGGAACAGGAT+CGG | 0.518006 | 4.2:-7184161 | None:intergenic |
| CTTATTTCAGATAACGGCGG+TGG | 0.518759 | 4.2:+7180674 | MS.gene063275:intron |
| GTTGGACTTCAGGTTTGTAA+TGG | 0.522260 | 4.2:+7180045 | MS.gene063275:intron |
| CAGCAGGAAGTGGTGGCCGT+GGG | 0.523090 | 4.2:+7183683 | MS.gene063275:CDS |
| TTTGGACAATGCATTGGATG+AGG | 0.526190 | 4.2:+7179945 | MS.gene063275:CDS |
| CGTGCCTTCGAATCTTCAAC+CGG | 0.526751 | 4.2:+7179186 | MS.gene063275:CDS |
| CATATCTACATTTACATATG+TGG | 0.529551 | 4.2:-7180070 | None:intergenic |
| GAAGATTCGAAGGCACGAGC+AGG | 0.530273 | 4.2:-7179180 | None:intergenic |
| GTCAAGGAAAAGATGGGAAG+AGG | 0.531099 | 4.2:+7180925 | MS.gene063275:CDS |
| TTCTAGATTAGAGAAGAAAG+AGG | 0.532224 | 4.2:+7185408 | MS.gene063275:intron |
| AGTCGAAATATATCTAGTGC+TGG | 0.532649 | 4.2:+7184409 | MS.gene063275:CDS |
| GCATGATATGAAAGATTCTA+CGG | 0.537301 | 4.2:-7184101 | None:intergenic |
| ATCTGGAATCCAGCAGGAAG+TGG | 0.538539 | 4.2:+7183673 | MS.gene063275:CDS |
| TGAGGCCGACCTTCTTAGCC+AGG | 0.543176 | 4.2:+7182177 | MS.gene063275:CDS |
| TCGATGACCGAGTCAGGTAT+CGG | 0.544821 | 4.2:-7178865 | None:intergenic |
| TCGTCAAAGAACCAAGCAAA+GGG | 0.546122 | 4.2:+7184382 | MS.gene063275:CDS |
| GGTAATTATATACAATCTCT+GGG | 0.546744 | 4.2:+7182375 | MS.gene063275:CDS |
| CTCAATCTGGAGTTGCTGAT+GGG | 0.547830 | 4.2:+7183048 | MS.gene063275:CDS |
| AATTGAGTTCCAGCTGACCT+TGG | 0.548168 | 4.2:-7182405 | None:intergenic |
| TGCGAACTTCTCTAGATGAC+TGG | 0.548230 | 4.2:+7182110 | MS.gene063275:CDS |
| AATGGGCTTCTACATCGAAC+CGG | 0.552678 | 4.2:+7179085 | MS.gene063275:CDS |
| CTAATGCCACAAGTCATAAG+TGG | 0.555360 | 4.2:+7179785 | MS.gene063275:CDS |
| ACCGAGTCAGGTATCGGAGC+GGG | 0.555423 | 4.2:-7178859 | None:intergenic |
| AGTGCAAATCTCTGGAAACC+CGG | 0.555432 | 4.2:+7185476 | MS.gene063275:CDS |
| TCATAAGAATCGACTCATCA+AGG | 0.557946 | 4.2:+7183239 | MS.gene063275:CDS |
| CTTCTCAAGCAGCTCTTGGA+TGG | 0.558462 | 4.2:-7187167 | None:intergenic |
| GTCGACGCCGGAGAAGGAGA+AGG | 0.558649 | 4.2:-7179024 | None:intergenic |
| GTTTCCGAATTATTCTTCGT+GGG | 0.563425 | 4.2:+7182961 | MS.gene063275:CDS |
| AAGTCCTTCCAAGAAAAGAA+AGG | 0.563639 | 4.2:+7178948 | MS.gene063275:CDS |
| CCTGTTGTCAAGGAAAAGAT+GGG | 0.569016 | 4.2:+7180919 | MS.gene063275:CDS |
| GGATTCCAGATCCTCCAGAA+TGG | 0.570173 | 4.2:-7183661 | None:intergenic |
| TGGAGGATCTGGAATCCAGC+AGG | 0.570456 | 4.2:+7183667 | MS.gene063275:CDS |
| AGTCATAAGTGGGCTCTTGG+AGG | 0.570495 | 4.2:+7179796 | MS.gene063275:CDS |
| CCAAATGAATGCAGTTAACA+AGG | 0.571108 | 4.2:-7187246 | None:intergenic |
| AGAAGGTTAGATCACTTGAA+AGG | 0.571506 | 4.2:+7187185 | MS.gene063275:CDS |
| ATGGTTGCTACTGTTACTAT+CGG | 0.572756 | 4.2:+7183165 | MS.gene063275:CDS |
| TGATGTCTTCTCTGAAGAGA+GGG | 0.574275 | 4.2:+7186633 | MS.gene063275:CDS |
| ACAGGCGTCGACGCCGGAGA+AGG | 0.574660 | 4.2:-7179030 | None:intergenic |
| CATCCAAGAGCTGCTTGAGA+AGG | 0.576882 | 4.2:+7187168 | MS.gene063275:CDS |
| TACATCTGCTCCAAGCCTCA+TGG | 0.580775 | 4.2:-7180886 | None:intergenic |
| TGTTACTATCGGATTTGTCA+AGG | 0.580977 | 4.2:+7183176 | MS.gene063275:CDS |
| CTCGTCAAAGAACCAAGCAA+AGG | 0.584131 | 4.2:+7184381 | MS.gene063275:CDS |
| ATCAGGCCTACACGGAGCAT+AGG | 0.585217 | 4.2:+7181636 | MS.gene063275:intron |
| AATCGAAATAGAAAGCAAAA+CGG | 0.586695 | 4.2:+7184043 | MS.gene063275:CDS |
| TTGATGTCTTCTCTGAAGAG+AGG | 0.587046 | 4.2:+7186632 | MS.gene063275:CDS |
| CCATCAGCAACTCCAGATTG+AGG | 0.592101 | 4.2:-7183047 | None:intergenic |
| ATATAATTACCCGTGTACCT+TGG | 0.592587 | 4.2:-7182363 | None:intergenic |
| TGCTGGAAAGTCATTTGGGA+AGG | 0.593569 | 4.2:+7184426 | MS.gene063275:CDS |
| TGGAAAGCCGGTGATTATGG+TGG | 0.594419 | 4.2:+7179153 | MS.gene063275:CDS |
| AGAATCACGAGTTGAAGGAG+AGG | 0.594654 | 4.2:+7185283 | MS.gene063275:CDS |
| AACTTATCGACATTCACTGA+GGG | 0.596733 | 4.2:+7182624 | MS.gene063275:CDS |
| AAAAGAAAGGTTAATGACAA+AGG | 0.596916 | 4.2:+7178961 | MS.gene063275:CDS |
| TCTGAGTGGTGCATCTATGG+TGG | 0.598619 | 4.2:+7187271 | MS.gene063275:CDS |
| GGAGAAGGAGAAGGAGCAAG+AGG | 0.599429 | 4.2:-7179015 | None:intergenic |
| GTGCAAATCTCTGGAAACCC+GGG | 0.600738 | 4.2:+7185477 | MS.gene063275:CDS |
| GGAAGACATTGTAGTGCCCA+TGG | 0.602512 | 4.2:+7181695 | MS.gene063275:CDS |
| AAGAGCCCACTTATGACTTG+TGG | 0.607772 | 4.2:-7179791 | None:intergenic |
| ATACGTCAATGCATGTCACT+GGG | 0.610043 | 4.2:+7180713 | MS.gene063275:CDS |
| AGTTGGTATGGATCATGTCA+GGG | 0.610107 | 4.2:+7179741 | MS.gene063275:intron |
| GGTTGTTGCTGCCGCTACGG+CGG | 0.614002 | 4.2:+7178924 | MS.gene063275:CDS |
| TGGAATCCAGCAGGAAGTGG+TGG | 0.614206 | 4.2:+7183676 | MS.gene063275:CDS |
| GCATTCATTTGGCTTCTGAG+TGG | 0.616440 | 4.2:+7187257 | MS.gene063275:CDS |
| AGGAGAACCACCATAATCAC+CGG | 0.616981 | 4.2:-7179160 | None:intergenic |
| TTATTTCAGATAACGGCGGT+GGG | 0.618674 | 4.2:+7180675 | MS.gene063275:intron |
| ATGCTTGCGAGTAAGAAAGA+TGG | 0.618736 | 4.2:+7180090 | MS.gene063275:CDS |
| AAGTTCCGCTACAAATGGCA+AGG | 0.619802 | 4.2:+7184198 | MS.gene063275:CDS |
| AAATACCTGGCTAAGAAGGT+CGG | 0.620846 | 4.2:-7182182 | None:intergenic |
| ATGCCCCACCTATGACCCCA+CGG | 0.621901 | 4.2:-7183699 | None:intergenic |
| AACTTTGGTTCACTGATGAG+CGG | 0.622636 | 4.2:-7184306 | None:intergenic |
| ATTGTGTTCTCCTGTTGTCA+AGG | 0.626229 | 4.2:+7180909 | MS.gene063275:CDS |
| GAACCTGCCCATGACAAGCA+AGG | 0.627707 | 4.2:+7183819 | MS.gene063275:CDS |
| ACCCGCTCCGATACCTGACT+CGG | 0.627883 | 4.2:+7178858 | MS.gene063275:CDS |
| CTTACCGGTTGAAGATTCGA+AGG | 0.629128 | 4.2:-7179190 | None:intergenic |
| GGAAGGACTTTCCGCCGTAG+CGG | 0.629482 | 4.2:-7178935 | None:intergenic |
| TGTTGCCTTGCCATTTGTAG+CGG | 0.630952 | 4.2:-7184203 | None:intergenic |
| TAATGCCACAAGTCATAAGT+GGG | 0.632893 | 4.2:+7179786 | MS.gene063275:CDS |
| TTATTGACAGGCGTCGACGC+CGG | 0.632994 | 4.2:-7179036 | None:intergenic |
| AACCGAATCTAAATCAACAT+CGG | 0.635484 | 4.2:-7178905 | None:intergenic |
| TTATATCTGAGGATTCCTCA+AGG | 0.638211 | 4.2:+7182939 | MS.gene063275:CDS |
| TGATATGATGTATTCTCAGG+AGG | 0.641459 | 4.2:+7183013 | MS.gene063275:CDS |
| AGCAGGAAGTGGTGGCCGTG+GGG | 0.647388 | 4.2:+7183684 | MS.gene063275:CDS |
| AGAATAATTCGGAAACCTTG+AGG | 0.651583 | 4.2:-7182954 | None:intergenic |
| TACACAAGGATCTAACCCAA+AGG | 0.660630 | 4.2:+7184453 | MS.gene063275:CDS |
| AGAAAGGTTAATGACAAAGG+TGG | 0.667894 | 4.2:+7178964 | MS.gene063275:CDS |
| ATATTCTGAGAAAAGCAAGA+TGG | 0.668137 | 4.2:+7180736 | MS.gene063275:CDS |
| ATGTTGAAACAGTAGTTCAG+TGG | 0.675772 | 4.2:+7182140 | MS.gene063275:CDS |
| AGCAAGCCTATGCTCCGTGT+AGG | 0.693402 | 4.2:-7181642 | None:intergenic |
| AAAGTTAGATGACTTGAACA+AGG | 0.700282 | 4.2:+7186594 | MS.gene063275:CDS |
| AATCTCTGGGAGGATGACCA+AGG | 0.701386 | 4.2:+7182388 | MS.gene063275:CDS |
| TAACTTATCGACATTCACTG+AGG | 0.713108 | 4.2:+7182623 | MS.gene063275:CDS |
| ATTCTTATTTCAGATAACGG+CGG | 0.713205 | 4.2:+7180671 | MS.gene063275:intron |
| GCTTTAAAACAAGTACCATG+AGG | 0.717774 | 4.2:+7180871 | MS.gene063275:CDS |
| TTTGGGAAGGAGTCTACACA+AGG | 0.723742 | 4.2:+7184439 | MS.gene063275:CDS |
| AGTATTGCAAGCTTTAGACG+AGG | 0.724992 | 4.2:+7185444 | MS.gene063275:CDS |
| GACCGAGTCAGGTATCGGAG+CGG | 0.730390 | 4.2:-7178860 | None:intergenic |
| AGAGGACTGAGAAATCCCGC+CGG | 0.733991 | 4.2:-7178997 | None:intergenic |
| AATTATATACAATCTCTGGG+AGG | 0.747675 | 4.2:+7182378 | MS.gene063275:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 7178778 | 7187307 | 7178778 | ID=MS.gene063275 |
| chr4.2 | mRNA | 7178778 | 7187307 | 7178778 | ID=MS.gene063275.t1;Parent=MS.gene063275 |
| chr4.2 | exon | 7178778 | 7179207 | 7178778 | ID=MS.gene063275.t1.exon1;Parent=MS.gene063275.t1 |
| chr4.2 | CDS | 7178778 | 7179207 | 7178778 | ID=cds.MS.gene063275.t1;Parent=MS.gene063275.t1 |
| chr4.2 | exon | 7179743 | 7179817 | 7179743 | ID=MS.gene063275.t1.exon2;Parent=MS.gene063275.t1 |
| chr4.2 | CDS | 7179743 | 7179817 | 7179743 | ID=cds.MS.gene063275.t1;Parent=MS.gene063275.t1 |
| chr4.2 | exon | 7179932 | 7179966 | 7179932 | ID=MS.gene063275.t1.exon3;Parent=MS.gene063275.t1 |
| chr4.2 | CDS | 7179932 | 7179966 | 7179932 | ID=cds.MS.gene063275.t1;Parent=MS.gene063275.t1 |
| chr4.2 | exon | 7180057 | 7180135 | 7180057 | ID=MS.gene063275.t1.exon4;Parent=MS.gene063275.t1 |
| chr4.2 | CDS | 7180057 | 7180135 | 7180057 | ID=cds.MS.gene063275.t1;Parent=MS.gene063275.t1 |
| chr4.2 | exon | 7180684 | 7180776 | 7180684 | ID=MS.gene063275.t1.exon5;Parent=MS.gene063275.t1 |
| chr4.2 | CDS | 7180684 | 7180776 | 7180684 | ID=cds.MS.gene063275.t1;Parent=MS.gene063275.t1 |
| chr4.2 | exon | 7180862 | 7180946 | 7180862 | ID=MS.gene063275.t1.exon6;Parent=MS.gene063275.t1 |
| chr4.2 | CDS | 7180862 | 7180946 | 7180862 | ID=cds.MS.gene063275.t1;Parent=MS.gene063275.t1 |
| chr4.2 | exon | 7181641 | 7181716 | 7181641 | ID=MS.gene063275.t1.exon7;Parent=MS.gene063275.t1 |
| chr4.2 | CDS | 7181641 | 7181716 | 7181641 | ID=cds.MS.gene063275.t1;Parent=MS.gene063275.t1 |
| chr4.2 | exon | 7182070 | 7182198 | 7182070 | ID=MS.gene063275.t1.exon8;Parent=MS.gene063275.t1 |
| chr4.2 | CDS | 7182070 | 7182198 | 7182070 | ID=cds.MS.gene063275.t1;Parent=MS.gene063275.t1 |
| chr4.2 | exon | 7182346 | 7182444 | 7182346 | ID=MS.gene063275.t1.exon9;Parent=MS.gene063275.t1 |
| chr4.2 | CDS | 7182346 | 7182444 | 7182346 | ID=cds.MS.gene063275.t1;Parent=MS.gene063275.t1 |
| chr4.2 | exon | 7182544 | 7182645 | 7182544 | ID=MS.gene063275.t1.exon10;Parent=MS.gene063275.t1 |
| chr4.2 | CDS | 7182544 | 7182645 | 7182544 | ID=cds.MS.gene063275.t1;Parent=MS.gene063275.t1 |
| chr4.2 | exon | 7182924 | 7183088 | 7182924 | ID=MS.gene063275.t1.exon11;Parent=MS.gene063275.t1 |
| chr4.2 | CDS | 7182924 | 7183088 | 7182924 | ID=cds.MS.gene063275.t1;Parent=MS.gene063275.t1 |
| chr4.2 | exon | 7183165 | 7183260 | 7183165 | ID=MS.gene063275.t1.exon12;Parent=MS.gene063275.t1 |
| chr4.2 | CDS | 7183165 | 7183260 | 7183165 | ID=cds.MS.gene063275.t1;Parent=MS.gene063275.t1 |
| chr4.2 | exon | 7183661 | 7183712 | 7183661 | ID=MS.gene063275.t1.exon13;Parent=MS.gene063275.t1 |
| chr4.2 | CDS | 7183661 | 7183712 | 7183661 | ID=cds.MS.gene063275.t1;Parent=MS.gene063275.t1 |
| chr4.2 | exon | 7183796 | 7183907 | 7183796 | ID=MS.gene063275.t1.exon14;Parent=MS.gene063275.t1 |
| chr4.2 | CDS | 7183796 | 7183907 | 7183796 | ID=cds.MS.gene063275.t1;Parent=MS.gene063275.t1 |
| chr4.2 | exon | 7184009 | 7184474 | 7184009 | ID=MS.gene063275.t1.exon15;Parent=MS.gene063275.t1 |
| chr4.2 | CDS | 7184009 | 7184474 | 7184009 | ID=cds.MS.gene063275.t1;Parent=MS.gene063275.t1 |
| chr4.2 | exon | 7185222 | 7185304 | 7185222 | ID=MS.gene063275.t1.exon16;Parent=MS.gene063275.t1 |
| chr4.2 | CDS | 7185222 | 7185304 | 7185222 | ID=cds.MS.gene063275.t1;Parent=MS.gene063275.t1 |
| chr4.2 | exon | 7185414 | 7185498 | 7185414 | ID=MS.gene063275.t1.exon17;Parent=MS.gene063275.t1 |
| chr4.2 | CDS | 7185414 | 7185498 | 7185414 | ID=cds.MS.gene063275.t1;Parent=MS.gene063275.t1 |
| chr4.2 | exon | 7186577 | 7186699 | 7186577 | ID=MS.gene063275.t1.exon18;Parent=MS.gene063275.t1 |
| chr4.2 | CDS | 7186577 | 7186699 | 7186577 | ID=cds.MS.gene063275.t1;Parent=MS.gene063275.t1 |
| chr4.2 | exon | 7187158 | 7187307 | 7187158 | ID=MS.gene063275.t1.exon19;Parent=MS.gene063275.t1 |
| chr4.2 | CDS | 7187158 | 7187307 | 7187158 | ID=cds.MS.gene063275.t1;Parent=MS.gene063275.t1 |
| Gene Sequence |
| Protein sequence |
