Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063451.t1 | RHN74686.1 | 43.2 | 461 | 15 | 2 | 1 | 214 | 38 | 498 | 1.00E-81 | 313.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063451.t1 | A0A396J8U4 | 43.2 | 461 | 15 | 2 | 1 | 214 | 38 | 498 | 7.2e-82 | 313.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene063451 | MS.gene047136 | PPI |
MS.gene072000 | MS.gene063451 | PPI |
MS.gene063451 | MS.gene033695 | PPI |
MS.gene78164 | MS.gene063451 | PPI |
MS.gene071257 | MS.gene063451 | PPI |
MS.gene54960 | MS.gene063451 | PPI |
MS.gene063451 | MS.gene01653 | PPI |
MS.gene072003 | MS.gene063451 | PPI |
MS.gene065373 | MS.gene063451 | PPI |
MS.gene063451 | MS.gene024262 | PPI |
MS.gene063451 | MS.gene51793 | PPI |
MS.gene063451 | MS.gene033694 | PPI |
MS.gene063451 | MS.gene045772 | PPI |
MS.gene047137 | MS.gene063451 | PPI |
MS.gene063451 | MS.gene002112 | PPI |
MS.gene063451 | MS.gene54959 | PPI |
MS.gene063451 | MS.gene51795 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063451.t1 | MTR_2g071720 | 76.190 | 126 | 25 | 1 | 89 | 214 | 50 | 170 | 1.04e-65 | 201 |
MS.gene063451.t1 | MTR_2g071700 | 86.408 | 103 | 14 | 0 | 1 | 103 | 38 | 140 | 6.25e-57 | 184 |
MS.gene063451.t1 | MTR_2g072240 | 57.778 | 135 | 45 | 2 | 90 | 212 | 301 | 435 | 3.26e-47 | 161 |
MS.gene063451.t1 | MTR_2g072240 | 50.000 | 102 | 49 | 1 | 2 | 101 | 31 | 132 | 1.68e-24 | 100 |
MS.gene063451.t1 | MTR_6g034190 | 66.346 | 104 | 35 | 0 | 111 | 214 | 397 | 500 | 2.88e-45 | 157 |
MS.gene063451.t1 | MTR_6g034190 | 49.515 | 103 | 49 | 1 | 2 | 101 | 38 | 140 | 2.50e-22 | 94.7 |
MS.gene063451.t1 | MTR_2g070660 | 92.308 | 65 | 5 | 0 | 37 | 101 | 44 | 108 | 5.66e-36 | 125 |
MS.gene063451.t1 | MTR_2g070780 | 65.049 | 103 | 33 | 1 | 1 | 103 | 37 | 136 | 1.20e-34 | 126 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 50 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAAAATATTCCTCATTTCT+AGG | 0.187885 | 2.3:-25198549 | None:intergenic |
CTTACCCCATAAGTTTGTTT+TGG | 0.235274 | 2.3:+25200105 | MS.gene063451:CDS |
TTCAAATCAATTGACAATTT+AGG | 0.238343 | 2.3:-25200338 | None:intergenic |
AAGACTTCAACATTTGTATT+TGG | 0.241915 | 2.3:-25198210 | None:intergenic |
CCCAAAGTCTGTTTGTATAA+AGG | 0.251374 | 2.3:+25200163 | MS.gene063451:CDS |
GTTAAGTACTTAGTATTAAA+TGG | 0.281525 | 2.3:+25200218 | MS.gene063451:CDS |
TTTGAGCCAAAACAAACTTA+TGG | 0.285224 | 2.3:-25200111 | None:intergenic |
CCAAAGTCTGTTTGTATAAA+GGG | 0.312534 | 2.3:+25200164 | MS.gene063451:CDS |
CCCTTTATACAAACAGACTT+TGG | 0.315234 | 2.3:-25200164 | None:intergenic |
TTGAGCCAAAACAAACTTAT+GGG | 0.331764 | 2.3:-25200110 | None:intergenic |
TGCAAGTGCGGATGGTATTC+TGG | 0.335437 | 2.3:+25198668 | MS.gene063451:CDS |
TGACCGCCTTACAATGGTTA+TGG | 0.344537 | 2.3:+25198267 | MS.gene063451:CDS |
GACAATTTAGGAGAGAGTTT+TGG | 0.359150 | 2.3:-25200326 | None:intergenic |
TCAAATATTGACAGTCATAT+TGG | 0.380435 | 2.3:+25198603 | MS.gene063451:CDS |
CCTTTATACAAACAGACTTT+GGG | 0.390219 | 2.3:-25200163 | None:intergenic |
TTGTCAATTGATTTGAAACC+TGG | 0.390272 | 2.3:+25200344 | MS.gene063451:CDS |
AGTATTAAATGGCGGAGTTA+TGG | 0.423482 | 2.3:+25200229 | MS.gene063451:CDS |
TTATGGATAATATTACCATT+TGG | 0.432439 | 2.3:+25200246 | MS.gene063451:CDS |
TCGAATGGTACAACTCTTCA+AGG | 0.460907 | 2.3:-25198628 | None:intergenic |
CTGTACCAACTGCATGTTTG+CGG | 0.483179 | 2.3:+25200297 | MS.gene063451:CDS |
GGTGTGGTAGCTTTGATGAA+TGG | 0.494341 | 2.3:+25200389 | MS.gene063451:CDS |
CAAAACAAACTTATGGGGTA+AGG | 0.495683 | 2.3:-25200104 | None:intergenic |
CCACAATGTCTCCCATCGCT+TGG | 0.508796 | 2.3:-25198161 | None:intergenic |
TGCGCTCCATAACCATTGTA+AGG | 0.509774 | 2.3:-25198273 | None:intergenic |
GTGTGGTAGCTTTGATGAAT+GGG | 0.515371 | 2.3:+25200390 | MS.gene063451:CDS |
TCCGCACTTGCATAACTCTC+AGG | 0.523052 | 2.3:-25198657 | None:intergenic |
CAAGTGTGCTTTCCAAGCGA+TGG | 0.528071 | 2.3:+25198149 | MS.gene063451:CDS |
TACAAACAGACTTTGGGTTG+CGG | 0.532904 | 2.3:-25200157 | None:intergenic |
GCCGAGTATATACAAAAGAA+TGG | 0.545486 | 2.3:+25200368 | MS.gene063451:CDS |
AATATTTGATGTAATCATCA+AGG | 0.552019 | 2.3:-25198589 | None:intergenic |
TGTCAATTGATTTGAAACCT+GGG | 0.558987 | 2.3:+25200345 | MS.gene063451:CDS |
CCAAGCGATGGGAGACATTG+TGG | 0.566970 | 2.3:+25198161 | MS.gene063451:CDS |
AAGTGTGCTTTCCAAGCGAT+GGG | 0.578750 | 2.3:+25198150 | MS.gene063451:CDS |
ATTGTAAGGCGGTCAACAAG+TGG | 0.580770 | 2.3:-25198259 | None:intergenic |
GAGAGTTATGCAAGTGCGGA+TGG | 0.583499 | 2.3:+25198660 | MS.gene063451:CDS |
GTCAATTGATTTGAAACCTG+GGG | 0.585160 | 2.3:+25200346 | MS.gene063451:CDS |
ACTTGTTGACCGCCTTACAA+TGG | 0.585178 | 2.3:+25198261 | MS.gene063451:CDS |
TGAGCCAAAACAAACTTATG+GGG | 0.588293 | 2.3:-25200109 | None:intergenic |
TACAATGGTTATGGAGCGCA+AGG | 0.588317 | 2.3:+25198276 | MS.gene063451:CDS |
ACAGGTAGCTCCTAGAAATG+AGG | 0.598289 | 2.3:+25198539 | MS.gene063451:intron |
GTTTGTATAAAGGGATACAA+TGG | 0.615146 | 2.3:+25200173 | MS.gene063451:CDS |
ACTCTCAGGCAAGTGTCGAA+TGG | 0.625810 | 2.3:-25198643 | None:intergenic |
TGTATAAAGGGATACAATGG+TGG | 0.627410 | 2.3:+25200176 | MS.gene063451:CDS |
TATGACCGCAAACATGCAGT+TGG | 0.629676 | 2.3:-25200302 | None:intergenic |
CGAATGGTACAACTCTTCAA+GGG | 0.641099 | 2.3:-25198627 | None:intergenic |
TTGCGGCTAACACACATACA+CGG | 0.662587 | 2.3:-25200140 | None:intergenic |
GCCTGAGAGTTATGCAAGTG+CGG | 0.670396 | 2.3:+25198656 | MS.gene063451:CDS |
GTATATACAAAAGAATGGTG+TGG | 0.676742 | 2.3:+25200373 | MS.gene063451:CDS |
AAGTACTTAGTATTAAATGG+CGG | 0.690460 | 2.3:+25200221 | MS.gene063451:CDS |
GCTCCATAACCATTGTAAGG+CGG | 0.743889 | 2.3:-25198270 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAGATAGTTATTAAAAA+AGG | - | chr2.3:25199627-25199646 | None:intergenic | 10.0% |
!! | AAAAGATAGTTATTAAAAAA+GGG | - | chr2.3:25199626-25199645 | None:intergenic | 10.0% |
!! | ATTAATTTATAGTTATATCA+TGG | - | chr2.3:25199981-25200000 | None:intergenic | 10.0% |
!!! | ATGATTTATGTTTTAATTTA+CGG | + | chr2.3:25198345-25198364 | MS.gene063451:intron | 10.0% |
!! | AACCGATAAATATATATAAA+CGG | + | chr2.3:25199354-25199373 | MS.gene063451:intron | 15.0% |
!! | AACCGTTTATATATATTTAT+CGG | - | chr2.3:25199359-25199378 | None:intergenic | 15.0% |
!! | GAATAATTAGATTAATCAAA+TGG | + | chr2.3:25198373-25198392 | MS.gene063451:intron | 15.0% |
!!! | AATTTTATTTCTCAAAAGAT+TGG | + | chr2.3:25199524-25199543 | MS.gene063451:intron | 15.0% |
!!! | CAATTATTCAAGTTTTAAAA+TGG | + | chr2.3:25199870-25199889 | MS.gene063451:intron | 15.0% |
!!! | TTGATTAAACTTTTTGTTTA+TGG | + | chr2.3:25199073-25199092 | MS.gene063451:intron | 15.0% |
!!! | TTTACATGACATTTTTTTTA+AGG | - | chr2.3:25199230-25199249 | None:intergenic | 15.0% |
!! | AATATTTGATGTAATCATCA+AGG | - | chr2.3:25198592-25198611 | None:intergenic | 20.0% |
!! | ATAACATAGCTTATTATATG+TGG | + | chr2.3:25199027-25199046 | MS.gene063451:intron | 20.0% |
!! | ATTTGAAGATTCATTAATTG+TGG | - | chr2.3:25199779-25199798 | None:intergenic | 20.0% |
!! | CATTCATTTCATTCAAAAAA+TGG | - | chr2.3:25198463-25198482 | None:intergenic | 20.0% |
!! | GAGAAATATATTTAAGCATT+TGG | + | chr2.3:25199679-25199698 | MS.gene063451:intron | 20.0% |
!! | GTTAAGTACTTAGTATTAAA+TGG | + | chr2.3:25200218-25200237 | MS.gene063451:CDS | 20.0% |
!! | TATATGTACAACTTAACATA+TGG | + | chr2.3:25198837-25198856 | MS.gene063451:intron | 20.0% |
!! | TTATGGATAATATTACCATT+TGG | + | chr2.3:25200246-25200265 | MS.gene063451:CDS | 20.0% |
!! | TTCAAATCAATTGACAATTT+AGG | - | chr2.3:25200341-25200360 | None:intergenic | 20.0% |
!! | TTTGAAGATTCATTAATTGT+GGG | - | chr2.3:25199778-25199797 | None:intergenic | 20.0% |
!!! | ATAAGCTATGTTATTTTTCT+AGG | - | chr2.3:25199021-25199040 | None:intergenic | 20.0% |
!!! | ATTTATGTCAATTTGTTGTA+TGG | + | chr2.3:25199428-25199447 | MS.gene063451:intron | 20.0% |
!!! | TAAGCTATGTTATTTTTCTA+GGG | - | chr2.3:25199020-25199039 | None:intergenic | 20.0% |
!!! | TAATATTACCATTTGGTTTT+TGG | + | chr2.3:25200253-25200272 | MS.gene063451:CDS | 20.0% |
!!! | TATCTTTTTTGATTGTCTTA+GGG | + | chr2.3:25199638-25199657 | MS.gene063451:intron | 20.0% |
!!! | TTTATGTCAATTTGTTGTAT+GGG | + | chr2.3:25199429-25199448 | MS.gene063451:intron | 20.0% |
! | AAGACTTCAACATTTGTATT+TGG | - | chr2.3:25198213-25198232 | None:intergenic | 25.0% |
! | AAGTACTTAGTATTAAATGG+CGG | + | chr2.3:25200221-25200240 | MS.gene063451:CDS | 25.0% |
! | ACTAATTGAGTAATTGTGAT+GGG | + | chr2.3:25199050-25199069 | MS.gene063451:intron | 25.0% |
! | ATAGCAATGTTACATTATGA+GGG | - | chr2.3:25199397-25199416 | None:intergenic | 25.0% |
! | CAAAAGTGGAAATTATGTAT+TGG | + | chr2.3:25199492-25199511 | MS.gene063451:intron | 25.0% |
! | CATTTCTTTGTAGTTAATAG+AGG | + | chr2.3:25198769-25198788 | MS.gene063451:intron | 25.0% |
! | CCAAAAATTAGAACATTAGA+TGG | - | chr2.3:25198796-25198815 | None:intergenic | 25.0% |
! | GAAAGATAGTTGCAAATATA+TGG | - | chr2.3:25199833-25199852 | None:intergenic | 25.0% |
! | GAATCTTCAAATAAATAACC+AGG | + | chr2.3:25199787-25199806 | MS.gene063451:intron | 25.0% |
! | TATAGCAATGTTACATTATG+AGG | - | chr2.3:25199398-25199417 | None:intergenic | 25.0% |
! | TCAAAATATTCCTCATTTCT+AGG | - | chr2.3:25198552-25198571 | None:intergenic | 25.0% |
! | TCAAATATTGACAGTCATAT+TGG | + | chr2.3:25198603-25198622 | MS.gene063451:CDS | 25.0% |
! | TCACAAAAAATCACACTTAT+CGG | + | chr2.3:25198986-25199005 | MS.gene063451:intron | 25.0% |
! | TGAGATATGATACATATTGA+TGG | + | chr2.3:25198504-25198523 | MS.gene063451:intron | 25.0% |
! | TTTAAGGAGCAAAATCAAAT+TGG | - | chr2.3:25199214-25199233 | None:intergenic | 25.0% |
!! | ACCATTCTTTTGTATATACT+CGG | - | chr2.3:25200372-25200391 | None:intergenic | 25.0% |
!! | ATGGTATCTATTTTATGCTT+AGG | + | chr2.3:25199092-25199111 | MS.gene063451:intron | 25.0% |
!! | CAATACATAATTTCCACTTT+TGG | - | chr2.3:25199494-25199513 | None:intergenic | 25.0% |
!! | CCATCTAATGTTCTAATTTT+TGG | + | chr2.3:25198793-25198812 | MS.gene063451:intron | 25.0% |
!! | TGGTATCTATTTTATGCTTA+GGG | + | chr2.3:25199093-25199112 | MS.gene063451:intron | 25.0% |
!!! | ATTTTTTGTGATGTCTCAAA+AGG | - | chr2.3:25198977-25198996 | None:intergenic | 25.0% |
!!! | CTATCTTTTTTGATTGTCTT+AGG | + | chr2.3:25199637-25199656 | MS.gene063451:intron | 25.0% |
!!! | TGAATGAATTTTAATCCCAA+AGG | + | chr2.3:25198477-25198496 | MS.gene063451:intron | 25.0% |
!!! | TTTTTTGTGATGTCTCAAAA+GGG | - | chr2.3:25198976-25198995 | None:intergenic | 25.0% |
AATAAATAACCAGGTATGCT+TGG | + | chr2.3:25199796-25199815 | MS.gene063451:intron | 30.0% | |
AATTGAACACATGTAACTGA+AGG | - | chr2.3:25199855-25199874 | None:intergenic | 30.0% | |
ATAAATAACCAGGTATGCTT+GGG | + | chr2.3:25199797-25199816 | MS.gene063451:intron | 30.0% | |
ATCATATCTCAAATGCCTTT+GGG | - | chr2.3:25198495-25198514 | None:intergenic | 30.0% | |
CACAAAAAATCACACTTATC+GGG | + | chr2.3:25198987-25199006 | MS.gene063451:intron | 30.0% | |
CCAAAGTCTGTTTGTATAAA+GGG | + | chr2.3:25200164-25200183 | MS.gene063451:CDS | 30.0% | |
CCTTTATACAAACAGACTTT+GGG | - | chr2.3:25200166-25200185 | None:intergenic | 30.0% | |
GACTAATTGAGTAATTGTGA+TGG | + | chr2.3:25199049-25199068 | MS.gene063451:intron | 30.0% | |
GTATATACAAAAGAATGGTG+TGG | + | chr2.3:25200373-25200392 | MS.gene063451:CDS | 30.0% | |
GTTTGTATAAAGGGATACAA+TGG | + | chr2.3:25200173-25200192 | MS.gene063451:CDS | 30.0% | |
TAAGCCATATTAGCAGTATA+GGG | - | chr2.3:25199179-25199198 | None:intergenic | 30.0% | |
TAATGTTAACATGTGCTCTT+AGG | + | chr2.3:25199452-25199471 | MS.gene063451:intron | 30.0% | |
TACTGTTTAATTCAAAGTCG+AGG | - | chr2.3:25199715-25199734 | None:intergenic | 30.0% | |
TATCATATCTCAAATGCCTT+TGG | - | chr2.3:25198496-25198515 | None:intergenic | 30.0% | |
TTGAGCCAAAACAAACTTAT+GGG | - | chr2.3:25200113-25200132 | None:intergenic | 30.0% | |
TTTGAGCCAAAACAAACTTA+TGG | - | chr2.3:25200114-25200133 | None:intergenic | 30.0% | |
!! | TGTCAATTGATTTGAAACCT+GGG | + | chr2.3:25200345-25200364 | MS.gene063451:CDS | 30.0% |
!! | TTGTCAATTGATTTGAAACC+TGG | + | chr2.3:25200344-25200363 | MS.gene063451:CDS | 30.0% |
!!! | AAGTTTGTTTTGGCTCAAAA+GGG | + | chr2.3:25200115-25200134 | MS.gene063451:CDS | 30.0% |
!!! | CATTTTTTCCCTTATACTCT+AGG | + | chr2.3:25200040-25200059 | MS.gene063451:intron | 30.0% |
!!! | TAAGTTTGTTTTGGCTCAAA+AGG | + | chr2.3:25200114-25200133 | MS.gene063451:CDS | 30.0% |
AAATTAATCCCAAGCATACC+TGG | - | chr2.3:25199808-25199827 | None:intergenic | 35.0% | |
AACCTTGACCTAGAGTATAA+GGG | - | chr2.3:25200051-25200070 | None:intergenic | 35.0% | |
ATGGTGTGTAAGATGAATTG+TGG | + | chr2.3:25199889-25199908 | MS.gene063451:intron | 35.0% | |
CAAAACAAACTTATGGGGTA+AGG | - | chr2.3:25200107-25200126 | None:intergenic | 35.0% | |
CCCAAAGTCTGTTTGTATAA+AGG | + | chr2.3:25200163-25200182 | MS.gene063451:CDS | 35.0% | |
CCCTTTATACAAACAGACTT+TGG | - | chr2.3:25200167-25200186 | None:intergenic | 35.0% | |
CTAAGCCATATTAGCAGTAT+AGG | - | chr2.3:25199180-25199199 | None:intergenic | 35.0% | |
GCATTCATCCAAAAACCAAA+TGG | - | chr2.3:25200264-25200283 | None:intergenic | 35.0% | |
GCCGAGTATATACAAAAGAA+TGG | + | chr2.3:25200368-25200387 | MS.gene063451:CDS | 35.0% | |
TATGTTAAGGATGCCAAAAG+TGG | + | chr2.3:25199478-25199497 | MS.gene063451:intron | 35.0% | |
TGAGCCAAAACAAACTTATG+GGG | - | chr2.3:25200112-25200131 | None:intergenic | 35.0% | |
TGCTCTTAGGACATATGTTA+AGG | + | chr2.3:25199465-25199484 | MS.gene063451:intron | 35.0% | |
TGTATAAAGGGATACAATGG+TGG | + | chr2.3:25200176-25200195 | MS.gene063451:CDS | 35.0% | |
TTTGTTACTATTCGGTAAGG+TGG | - | chr2.3:25199151-25199170 | None:intergenic | 35.0% | |
! | AGTATTAAATGGCGGAGTTA+TGG | + | chr2.3:25200229-25200248 | MS.gene063451:CDS | 35.0% |
! | GACAATTTAGGAGAGAGTTT+TGG | - | chr2.3:25200329-25200348 | None:intergenic | 35.0% |
! | GCTTTTGTTACTATTCGGTA+AGG | - | chr2.3:25199154-25199173 | None:intergenic | 35.0% |
! | GGGAAGCTTTTGTTACTATT+CGG | - | chr2.3:25199159-25199178 | None:intergenic | 35.0% |
!! | CTTACCCCATAAGTTTGTTT+TGG | + | chr2.3:25200105-25200124 | MS.gene063451:CDS | 35.0% |
!! | GTCAATTGATTTGAAACCTG+GGG | + | chr2.3:25200346-25200365 | MS.gene063451:CDS | 35.0% |
!! | GTTTTTGGATGAATGCTCAT+GGG | + | chr2.3:25200268-25200287 | MS.gene063451:CDS | 35.0% |
AGATGCAAACAAGTGAGTCA+AGG | + | chr2.3:25198909-25198928 | MS.gene063451:intron | 40.0% | |
ATTCTTGACATGTGCCATGA+AGG | + | chr2.3:25199585-25199604 | MS.gene063451:intron | 40.0% | |
CAACCTTGACCTAGAGTATA+AGG | - | chr2.3:25200052-25200071 | None:intergenic | 40.0% | |
CATGCTTATATGTGCCTTCA+TGG | - | chr2.3:25199602-25199621 | None:intergenic | 40.0% | |
CGAATGGTACAACTCTTCAA+GGG | - | chr2.3:25198630-25198649 | None:intergenic | 40.0% | |
GACTCACTTGTTTGCATCTA+CGG | - | chr2.3:25198908-25198927 | None:intergenic | 40.0% | |
GAGTGCAAAAGAAAGAGCTA+TGG | - | chr2.3:25199747-25199766 | None:intergenic | 40.0% | |
GCTTCCCTATACTGCTAATA+TGG | + | chr2.3:25199172-25199191 | MS.gene063451:intron | 40.0% | |
GTGTGTAAGATGAATTGTGG+TGG | + | chr2.3:25199892-25199911 | MS.gene063451:intron | 40.0% | |
TCGAATGGTACAACTCTTCA+AGG | - | chr2.3:25198631-25198650 | None:intergenic | 40.0% | |
TGATGGAATTCATGCATGAC+AGG | + | chr2.3:25198521-25198540 | MS.gene063451:intron | 40.0% | |
TTCCCTTATACTCTAGGTCA+AGG | + | chr2.3:25200046-25200065 | MS.gene063451:intron | 40.0% | |
! | TAAGGTGGTGATGACATACT+TGG | - | chr2.3:25199136-25199155 | None:intergenic | 40.0% |
!! | GAGCGCAAGGTAATTTGTTA+TGG | + | chr2.3:25198289-25198308 | MS.gene063451:intron | 40.0% |
!! | GGTTTTTGGATGAATGCTCA+TGG | + | chr2.3:25200267-25200286 | MS.gene063451:CDS | 40.0% |
!! | GTGTGGTAGCTTTGATGAAT+GGG | + | chr2.3:25200390-25200409 | MS.gene063451:CDS | 40.0% |
!! | TACAAACAGACTTTGGGTTG+CGG | - | chr2.3:25200160-25200179 | None:intergenic | 40.0% |
AAGTGTGCTTTCCAAGCGAT+GGG | + | chr2.3:25198150-25198169 | MS.gene063451:CDS | 45.0% | |
ACAGGTAGCTCCTAGAAATG+AGG | + | chr2.3:25198539-25198558 | MS.gene063451:intron | 45.0% | |
ATTGTAAGGCGGTCAACAAG+TGG | - | chr2.3:25198262-25198281 | None:intergenic | 45.0% | |
CTGTACCAACTGCATGTTTG+CGG | + | chr2.3:25200297-25200316 | MS.gene063451:CDS | 45.0% | |
GCTCCATAACCATTGTAAGG+CGG | - | chr2.3:25198273-25198292 | None:intergenic | 45.0% | |
TACAATGGTTATGGAGCGCA+AGG | + | chr2.3:25198276-25198295 | MS.gene063451:CDS | 45.0% | |
TATGACCGCAAACATGCAGT+TGG | - | chr2.3:25200305-25200324 | None:intergenic | 45.0% | |
TGACCGCCTTACAATGGTTA+TGG | + | chr2.3:25198267-25198286 | MS.gene063451:CDS | 45.0% | |
TGATTGTCTTAGGGTCATCG+AGG | + | chr2.3:25199647-25199666 | MS.gene063451:intron | 45.0% | |
TGCGCTCCATAACCATTGTA+AGG | - | chr2.3:25198276-25198295 | None:intergenic | 45.0% | |
TTGCGGCTAACACACATACA+CGG | - | chr2.3:25200143-25200162 | None:intergenic | 45.0% | |
! | ACTTGTTGACCGCCTTACAA+TGG | + | chr2.3:25198261-25198280 | MS.gene063451:CDS | 45.0% |
! | TTTTGTATATACTCGGCCCC+AGG | - | chr2.3:25200365-25200384 | None:intergenic | 45.0% |
!! | GGTGTGGTAGCTTTGATGAA+TGG | + | chr2.3:25200389-25200408 | MS.gene063451:CDS | 45.0% |
AGATTCTCTACAGCCCTTGC+TGG | - | chr2.3:25198422-25198441 | None:intergenic | 50.0% | |
CAAGTGTGCTTTCCAAGCGA+TGG | + | chr2.3:25198149-25198168 | MS.gene063451:CDS | 50.0% | |
CATGAAGAGTCAGCCAGCAA+GGG | + | chr2.3:25198406-25198425 | MS.gene063451:intron | 50.0% | |
GAGAGTTATGCAAGTGCGGA+TGG | + | chr2.3:25198660-25198679 | MS.gene063451:CDS | 50.0% | |
GCCTGAGAGTTATGCAAGTG+CGG | + | chr2.3:25198656-25198675 | MS.gene063451:CDS | 50.0% | |
TCATGAAGAGTCAGCCAGCA+AGG | + | chr2.3:25198405-25198424 | MS.gene063451:intron | 50.0% | |
TCCGCACTTGCATAACTCTC+AGG | - | chr2.3:25198660-25198679 | None:intergenic | 50.0% | |
TCTTAGGGTCATCGAGGTTC+AGG | + | chr2.3:25199653-25199672 | MS.gene063451:intron | 50.0% | |
TGCAAGTGCGGATGGTATTC+TGG | + | chr2.3:25198668-25198687 | MS.gene063451:CDS | 50.0% | |
!! | ACTCTCAGGCAAGTGTCGAA+TGG | - | chr2.3:25198646-25198665 | None:intergenic | 50.0% |
CCAAGCGATGGGAGACATTG+TGG | + | chr2.3:25198161-25198180 | MS.gene063451:CDS | 55.0% | |
CCACAATGTCTCCCATCGCT+TGG | - | chr2.3:25198164-25198183 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 25198133 | 25200415 | 25198133 | ID=MS.gene063451 |
chr2.3 | mRNA | 25198133 | 25200415 | 25198133 | ID=MS.gene063451.t1;Parent=MS.gene063451 |
chr2.3 | exon | 25198133 | 25198297 | 25198133 | ID=MS.gene063451.t1.exon1;Parent=MS.gene063451.t1 |
chr2.3 | CDS | 25198133 | 25198297 | 25198133 | ID=cds.MS.gene063451.t1;Parent=MS.gene063451.t1 |
chr2.3 | exon | 25198543 | 25198689 | 25198543 | ID=MS.gene063451.t1.exon2;Parent=MS.gene063451.t1 |
chr2.3 | CDS | 25198543 | 25198689 | 25198543 | ID=cds.MS.gene063451.t1;Parent=MS.gene063451.t1 |
chr2.3 | exon | 25200062 | 25200415 | 25200062 | ID=MS.gene063451.t1.exon3;Parent=MS.gene063451.t1 |
chr2.3 | CDS | 25200062 | 25200415 | 25200062 | ID=cds.MS.gene063451.t1;Parent=MS.gene063451.t1 |
Gene Sequence |
Protein sequence |