AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene063457

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063457.t1 MTR_6g034190 60.976 410 142 3 1 401 111 511 3.42e-174 496
MS.gene063457.t1 MTR_2g070780 92.827 237 17 0 1 237 105 341 5.59e-159 451
MS.gene063457.t1 MTR_2g072240 52.120 401 137 4 1 401 103 448 4.09e-133 389
MS.gene063457.t1 MTR_2g071700 76.087 230 55 0 1 230 109 338 1.95e-120 353
MS.gene063457.t1 MTR_2g071720 78.453 181 23 1 237 401 1 181 2.01e-97 288
MS.gene063457.t1 MTR_2g070820 88.288 111 13 0 171 281 1 111 2.57e-63 199
MS.gene063457.t1 MTR_2g070660 73.034 89 24 0 1 89 79 167 1.04e-39 140
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 82 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAAATCTGTTGGGGATTA+AGG 0.123792 2.3:+25107268 None:intergenic
GTTAAGTACTTAATATTAAA+TGG 0.208632 2.3:-25105624 MS.gene063457:CDS
CCTCACCCTCTAGGTCAATT+TGG 0.227733 2.3:-25105793 MS.gene063457:intron
TGTGAACGAGCGTAGGATTT+TGG 0.266869 2.3:-25107085 MS.gene063457:CDS
CCTAAAGAATGTTTGTATAA+AGG 0.274042 2.3:-25105679 MS.gene063457:CDS
CCTTTATACAAACATTCTTT+AGG 0.276237 2.3:+25105679 None:intergenic
TGAAATTTGTGGTGGCATTT+TGG 0.276341 2.3:-25106890 MS.gene063457:intron
CTTACCCCGGAGGTTTGTTT+TGG 0.286540 2.3:-25105737 MS.gene063457:CDS
TTATGAATAATATTACAATT+TGG 0.298100 2.3:-25105596 MS.gene063457:CDS
GCACGTAGAACCCGAAGTTT+TGG 0.308366 2.3:+25106988 None:intergenic
CTAAAGAATGTTTGTATAAA+GGG 0.314320 2.3:-25105678 MS.gene063457:CDS
CAAAATCTGTTGGGGATTAA+GGG 0.328803 2.3:+25107269 None:intergenic
TGAATCTTCAAATAAATAAC+CGG 0.337383 2.3:-25105968 MS.gene063457:CDS
ATAGAGTATATAAGAAAATA+TGG 0.344916 2.3:-25105474 MS.gene063457:CDS
TTCAGATCAATGGATAATTT+CGG 0.351106 2.3:+25105504 None:intergenic
TACAATAATGTTCAAATGCT+TGG 0.353231 2.3:-25106964 MS.gene063457:CDS
CTTAGAGGCCCCAAAACTTC+GGG 0.365917 2.3:-25106998 MS.gene063457:CDS
AGGGATATTATTGAAATTTG+TGG 0.398913 2.3:-25106901 MS.gene063457:CDS
CAACTCAAGAACCTTAAAAC+TGG 0.403099 2.3:+25107320 None:intergenic
TTATTTGAAGATTCATTAGT+TGG 0.403722 2.3:+25105976 None:intergenic
TCATGAAGATCTGATCTTAG+AGG 0.415542 2.3:-25107013 MS.gene063457:CDS
TATTTGAAGATTCATTAGTT+GGG 0.418765 2.3:+25105977 None:intergenic
TCAAATATTGACAATCATAT+TGG 0.420752 2.3:-25107546 MS.gene063457:CDS
GAGAGTATTCAAAATCTGTT+GGG 0.424914 2.3:+25107260 None:intergenic
TACAAACATTCTTTAGGTTG+TGG 0.433648 2.3:+25105685 None:intergenic
TTGTGCAAGTGGGGATGTTG+TGG 0.439085 2.3:-25107484 MS.gene063457:CDS
TTTCAGCCAAAACAAACCTC+CGG 0.449764 2.3:+25105731 None:intergenic
TGTGCAAGTGGGGATGTTGT+GGG 0.451246 2.3:-25107483 MS.gene063457:CDS
TATCCCAGGTTTCAGATCAA+TGG 0.467659 2.3:+25105494 None:intergenic
TCTAATGCTACAACTCTTCA+AGG 0.468328 2.3:+25107521 None:intergenic
CTTCAGATATGACTGTAAAC+AGG 0.471767 2.3:+25105533 None:intergenic
TCCCCACTTGCACAACTCTC+AGG 0.473005 2.3:+25107492 None:intergenic
CAAAACAAACCTCCGGGGTA+AGG 0.473251 2.3:+25105738 None:intergenic
CAAGTGGGGATGTTGTGGGT+TGG 0.473562 2.3:-25107479 MS.gene063457:CDS
GCATTCCTTTCAATCAAGTC+TGG 0.476075 2.3:+25107378 None:intergenic
TTATCCATTGATCTGAAACC+TGG 0.478986 2.3:-25105498 MS.gene063457:CDS
TTCAGCCAAAACAAACCTCC+GGG 0.483549 2.3:+25105732 None:intergenic
GATTCATGTGATTATCGTTA+CGG 0.496220 2.3:-25107408 MS.gene063457:CDS
GGGATGTTGTGGGTTGGATG+AGG 0.496853 2.3:-25107473 MS.gene063457:CDS
TCTTAGAGGCCCCAAAACTT+CGG 0.498004 2.3:-25106999 MS.gene063457:CDS
AAACTGGAGAAAACCTCAAA+AGG 0.499879 2.3:+25107336 None:intergenic
TCAATTCAAAATCGAGGCAA+AGG 0.505524 2.3:+25106048 None:intergenic
TGAGAGTATTCAAAATCTGT+TGG 0.507606 2.3:+25107259 None:intergenic
AACCTCAAAAGGTAAATCAA+TGG 0.528655 2.3:+25107347 None:intergenic
TTTCTTATATACTCTATCCC+AGG 0.537281 2.3:+25105480 None:intergenic
TATCCATTGATCTGAAACCT+GGG 0.540917 2.3:-25105497 MS.gene063457:CDS
ATTTGAAGATTCATTAGTTG+GGG 0.541423 2.3:+25105978 None:intergenic
TTTGGTTTCTGCACTTAACA+TGG 0.541431 2.3:-25107067 MS.gene063457:CDS
TACCATTCAATTCAAAATCG+AGG 0.544045 2.3:+25106042 None:intergenic
GATATTATTGAAATTTGTGG+TGG 0.564526 2.3:-25106898 MS.gene063457:CDS
CAATTCAAAATCGAGGCAAA+GGG 0.566625 2.3:+25106049 None:intergenic
GTTTGTATAAAGGGATACAA+AGG 0.571149 2.3:-25105669 MS.gene063457:CDS
GAATACCAGACTTGATTGAA+AGG 0.580687 2.3:-25107383 MS.gene063457:CDS
AACATGGAAGTCATAGAGAT+CGG 0.586179 2.3:-25107051 MS.gene063457:CDS
TTTGTGATGTGAACGAGCGT+AGG 0.592653 2.3:-25107092 MS.gene063457:CDS
GGTCATCGAGGTTCTAGCAT+GGG 0.596942 2.3:-25106095 MS.gene063457:CDS
TGGTGGTAGCTTTGATGAGT+GGG 0.600866 2.3:-25105454 MS.gene063457:CDS
AATATTTGATGTAATCATCA+TGG 0.606995 2.3:+25107560 None:intergenic
GAGTGCAAAAGAAAGAGCTA+TGG 0.611287 2.3:+25106010 None:intergenic
AAGTACTTAATATTAAATGG+AGG 0.612207 2.3:-25105621 MS.gene063457:CDS
TGTATAAAGGGATACAAAGG+TGG 0.615243 2.3:-25105666 MS.gene063457:CDS
GAATCTTCAAATAAATAACC+GGG 0.615702 2.3:-25105967 MS.gene063457:intron
TTGTGGCTGACACACCTACA+CGG 0.616160 2.3:+25105702 None:intergenic
ATCTGTTGGGGATTAAGGGA+GGG 0.617258 2.3:+25107273 None:intergenic
TGCCTGAGAGTTGTGCAAGT+GGG 0.620485 2.3:-25107494 MS.gene063457:CDS
GCCTGAGAGTTGTGCAAGTG+GGG 0.621594 2.3:-25107493 MS.gene063457:CDS
GGGTCATCGAGGTTCTAGCA+TGG 0.629061 2.3:-25106096 MS.gene063457:CDS
TGTGGCTGACACACCTACAC+GGG 0.629776 2.3:+25105703 None:intergenic
CTAATGCTACAACTCTTCAA+GGG 0.636034 2.3:+25107522 None:intergenic
GACTGTCTTCCTTACCCCGG+AGG 0.641992 2.3:-25105747 MS.gene063457:CDS
TCATGTGATTATCGTTACGG+AGG 0.650111 2.3:-25107405 MS.gene063457:CDS
AGAGTATTCAAAATCTGTTG+GGG 0.653579 2.3:+25107261 None:intergenic
AATCTGTTGGGGATTAAGGG+AGG 0.657486 2.3:+25107272 None:intergenic
GGCTGAAAAGAGACCCGTGT+AGG 0.671792 2.3:-25105716 MS.gene063457:CDS
ATGGTGGTAGCTTTGATGAG+TGG 0.672519 2.3:-25105455 MS.gene063457:CDS
TTGCCTGAGAGTTGTGCAAG+TGG 0.675075 2.3:-25107495 MS.gene063457:CDS
GAGTATATAAGAAAATATGG+TGG 0.676614 2.3:-25105471 MS.gene063457:CDS
AATGACTGTCTTCCTTACCC+CGG 0.683541 2.3:-25105750 MS.gene063457:CDS
TGATTGTCTTAGGGTCATCG+AGG 0.689894 2.3:-25106107 MS.gene063457:intron
AGACTTGATTGAAAGGAATG+CGG 0.704028 2.3:-25107376 MS.gene063457:CDS
TTTGAAGATTCATTAGTTGG+GGG 0.726871 2.3:+25105979 None:intergenic
TCAGCCAAAACAAACCTCCG+GGG 0.730392 2.3:+25105733 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATAAAATTTAATATA+TGG - chr2.3:25106273-25106292 MS.gene063457:intron 0.0%
!! TTATGAATAATATTACAATT+TGG - chr2.3:25107399-25107418 MS.gene063457:CDS 10.0%
!!! TATATAAAGAATTGAAATTT+TGG - chr2.3:25106793-25106812 MS.gene063457:intron 10.0%
!! ATAGAGTATATAAGAAAATA+TGG - chr2.3:25107521-25107540 MS.gene063457:CDS 15.0%
!! GTTAAGTACTTAATATTAAA+TGG - chr2.3:25107371-25107390 MS.gene063457:CDS 15.0%
!!! ATAATAAAACTTGTTGTTTA+TGG - chr2.3:25106511-25106530 MS.gene063457:intron 15.0%
!!! CACAAATTTTAATATATTTG+AGG + chr2.3:25105889-25105908 None:intergenic 15.0%
!!! TAATATTACAATTTGGTTTT+TGG - chr2.3:25107406-25107425 MS.gene063457:CDS 15.0%
!!! TATATTTTATGATTGTCTTA+GGG - chr2.3:25106879-25106898 MS.gene063457:intron 15.0%
!!! TTATATTTTATGATTGTCTT+AGG - chr2.3:25106878-25106897 MS.gene063457:intron 15.0%
!! AAATTAATTATAAGCATACC+CGG + chr2.3:25107049-25107068 None:intergenic 20.0%
!! AAGTACTTAATATTAAATGG+AGG - chr2.3:25107374-25107393 MS.gene063457:CDS 20.0%
!! CTAAAGAATGTTTGTATAAA+GGG - chr2.3:25107317-25107336 MS.gene063457:CDS 20.0%
!! TATTTGAAGATTCATTAGTT+GGG + chr2.3:25107021-25107040 None:intergenic 20.0%
!! TCAAATATTGACAATCATAT+TGG - chr2.3:25105449-25105468 MS.gene063457:CDS 20.0%
!! TGAATCTTCAAATAAATAAC+CGG - chr2.3:25107027-25107046 MS.gene063457:CDS 20.0%
!! TTATTTGAAGATTCATTAGT+TGG + chr2.3:25107022-25107041 None:intergenic 20.0%
!!! ATTTTAATATATTTGAGGCT+TGG + chr2.3:25105884-25105903 None:intergenic 20.0%
!!! TAAGCTATGAACTTTTTATA+TGG + chr2.3:25106458-25106477 None:intergenic 20.0%
! AAACAATAGATACTCATGAT+AGG + chr2.3:25106727-25106746 None:intergenic 25.0%
! ACTAATTGAGTAATTGTGAT+AGG - chr2.3:25106488-25106507 MS.gene063457:intron 25.0%
! AGGGATATTATTGAAATTTG+TGG - chr2.3:25106094-25106113 MS.gene063457:CDS 25.0%
! AGTTCATAGCTTATTATATG+TGG - chr2.3:25106465-25106484 MS.gene063457:intron 25.0%
! ATGGTATCTATTTAATGCTT+AGG - chr2.3:25106530-25106549 MS.gene063457:intron 25.0%
! ATTTGAAGATTCATTAGTTG+GGG + chr2.3:25107020-25107039 None:intergenic 25.0%
! CACAAAAAATCACACTTATT+GGG - chr2.3:25106425-25106444 MS.gene063457:intron 25.0%
! CCTAAAGAATGTTTGTATAA+AGG - chr2.3:25107316-25107335 MS.gene063457:CDS 25.0%
! CCTTTATACAAACATTCTTT+AGG + chr2.3:25107319-25107338 None:intergenic 25.0%
! GAATCTTCAAATAAATAACC+GGG - chr2.3:25107028-25107047 MS.gene063457:CDS 25.0%
! GAGTATATAAGAAAATATGG+TGG - chr2.3:25107524-25107543 MS.gene063457:CDS 25.0%
! GATATTATTGAAATTTGTGG+TGG - chr2.3:25106097-25106116 MS.gene063457:CDS 25.0%
! GGTTCATATTCAATTACAAT+TGG - chr2.3:25106294-25106313 MS.gene063457:intron 25.0%
! TAATCAATATTTGTAGCATG+AGG + chr2.3:25106619-25106638 None:intergenic 25.0%
! TACAATAATGTTCAAATGCT+TGG - chr2.3:25106031-25106050 MS.gene063457:CDS 25.0%
! TCACAAAAAATCACACTTAT+TGG - chr2.3:25106424-25106443 MS.gene063457:intron 25.0%
! TTCAGATCAATGGATAATTT+CGG + chr2.3:25107494-25107513 None:intergenic 25.0%
!!! ATAAGTGTGATTTTTTGTGA+TGG + chr2.3:25106424-25106443 None:intergenic 25.0%
!!! CATTTCTTTCTAGTTAATAG+AGG - chr2.3:25106199-25106218 MS.gene063457:intron 25.0%
!!! GGACAAAATGTTTTTATAGA+TGG - chr2.3:25106052-25106071 MS.gene063457:CDS 25.0%
!!! GGCTTTATTACTATTCAATA+TGG + chr2.3:25106594-25106613 None:intergenic 25.0%
!!! GGGAAGTATCTTTAAAAATT+TGG - chr2.3:25106920-25106939 MS.gene063457:CDS 25.0%
AACCTCAAAAGGTAAATCAA+TGG + chr2.3:25105651-25105670 None:intergenic 30.0%
GAGGAACTTACTAGAAAAAA+GGG - chr2.3:25105541-25105560 MS.gene063457:CDS 30.0%
GATTCATGTGATTATCGTTA+CGG - chr2.3:25105587-25105606 MS.gene063457:CDS 30.0%
GTTTGTATAAAGGGATACAA+AGG - chr2.3:25107326-25107345 MS.gene063457:CDS 30.0%
TACCATTCAATTCAAAATCG+AGG + chr2.3:25106956-25106975 None:intergenic 30.0%
TGAGGAACTTACTAGAAAAA+AGG - chr2.3:25105540-25105559 MS.gene063457:CDS 30.0%
TTTCTTATATACTCTATCCC+AGG + chr2.3:25107518-25107537 None:intergenic 30.0%
TTTGAAGATTCATTAGTTGG+GGG + chr2.3:25107019-25107038 None:intergenic 30.0%
! ACTATTCAATATGGTGTTGA+TGG + chr2.3:25106585-25106604 None:intergenic 30.0%
! AGAGTATTCAAAATCTGTTG+GGG + chr2.3:25105737-25105756 None:intergenic 30.0%
! ATGTGATTTTGTAACAGATG+AGG - chr2.3:25105844-25105863 MS.gene063457:intron 30.0%
!! GAGAGTATTCAAAATCTGTT+GGG + chr2.3:25105738-25105757 None:intergenic 30.0%
!! TACAAACATTCTTTAGGTTG+TGG + chr2.3:25107313-25107332 None:intergenic 30.0%
!! TGAGAGTATTCAAAATCTGT+TGG + chr2.3:25105739-25105758 None:intergenic 30.0%
!!! AACCATTGATTTACCTTTTG+AGG - chr2.3:25105646-25105665 MS.gene063457:CDS 30.0%
!!! ATTTTTTGTGATGGCTCAAA+AGG + chr2.3:25106415-25106434 None:intergenic 30.0%
!!! TTTTTTGTGATGGCTCAAAA+GGG + chr2.3:25106414-25106433 None:intergenic 30.0%
AAACTGGAGAAAACCTCAAA+AGG + chr2.3:25105662-25105681 None:intergenic 35.0%
AACATGGAAGTCATAGAGAT+CGG - chr2.3:25105944-25105963 MS.gene063457:intron 35.0%
AAGGGAATCATACTTGCATT+AGG + chr2.3:25106396-25106415 None:intergenic 35.0%
ACTAGAAAAAAGGGTGATGA+AGG - chr2.3:25105550-25105569 MS.gene063457:CDS 35.0%
AGAAAACTCTCTGTGCAATT+TGG - chr2.3:25106644-25106663 MS.gene063457:intron 35.0%
AGACTTGATTGAAAGGAATG+CGG - chr2.3:25105619-25105638 MS.gene063457:CDS 35.0%
AGGGAATCATACTTGCATTA+GGG + chr2.3:25106395-25106414 None:intergenic 35.0%
AGTAATCCAAATTGACCTAG+AGG + chr2.3:25107211-25107230 None:intergenic 35.0%
CAAAATCTGTTGGGGATTAA+GGG + chr2.3:25105729-25105748 None:intergenic 35.0%
CAACTCAAGAACCTTAAAAC+TGG + chr2.3:25105678-25105697 None:intergenic 35.0%
CAATATTTGTAGCATGAGGA+AGG + chr2.3:25106615-25106634 None:intergenic 35.0%
CAATTCAAAATCGAGGCAAA+GGG + chr2.3:25106949-25106968 None:intergenic 35.0%
CTAATGCTACAACTCTTCAA+GGG + chr2.3:25105476-25105495 None:intergenic 35.0%
CTTCAGATATGACTGTAAAC+AGG + chr2.3:25107465-25107484 None:intergenic 35.0%
GAATACCAGACTTGATTGAA+AGG - chr2.3:25105612-25105631 MS.gene063457:CDS 35.0%
GCATACTATAGGTTACCAAT+TGG + chr2.3:25106563-25106582 None:intergenic 35.0%
GTAATCCAAATTGACCTAGA+GGG + chr2.3:25107210-25107229 None:intergenic 35.0%
TAAGATTAACATGCGAGTCA+AGG - chr2.3:25106348-25106367 MS.gene063457:intron 35.0%
TCAAAATCTGTTGGGGATTA+AGG + chr2.3:25105730-25105749 None:intergenic 35.0%
TCAATTCAAAATCGAGGCAA+AGG + chr2.3:25106950-25106969 None:intergenic 35.0%
TCATGAAGATCTGATCTTAG+AGG - chr2.3:25105982-25106001 MS.gene063457:CDS 35.0%
TCTAATGCTACAACTCTTCA+AGG + chr2.3:25105477-25105496 None:intergenic 35.0%
TGCTGCATTACAATTCTACT+AGG - chr2.3:25106249-25106268 MS.gene063457:intron 35.0%
TGTATAAAGGGATACAAAGG+TGG - chr2.3:25107329-25107348 MS.gene063457:CDS 35.0%
TTCCAAGTGAAGTATAGTAG+AGG + chr2.3:25106140-25106159 None:intergenic 35.0%
TTCCTCTACTATACTTCACT+TGG - chr2.3:25106135-25106154 MS.gene063457:intron 35.0%
! ATGCAAGCTTTTGACAACAA+GGG - chr2.3:25106075-25106094 MS.gene063457:CDS 35.0%
! TATCCATTGATCTGAAACCT+GGG - chr2.3:25107498-25107517 MS.gene063457:CDS 35.0%
! TGAAATTTGTGGTGGCATTT+TGG - chr2.3:25106105-25106124 MS.gene063457:intron 35.0%
! TGAGGTTTTCTCCAGTTTTA+AGG - chr2.3:25105664-25105683 MS.gene063457:CDS 35.0%
! TGCCTCGATTTTGAATTGAA+TGG - chr2.3:25106951-25106970 MS.gene063457:CDS 35.0%
! TTATCCATTGATCTGAAACC+TGG - chr2.3:25107497-25107516 MS.gene063457:CDS 35.0%
! TTTGGTTTCTGCACTTAACA+TGG - chr2.3:25105928-25105947 MS.gene063457:intron 35.0%
CACACACACACACACATATA+TGG + chr2.3:25107074-25107093 None:intergenic 40.0%
GAGTGCAAAAGAAAGAGCTA+TGG + chr2.3:25106988-25107007 None:intergenic 40.0%
GCATTCCTTTCAATCAAGTC+TGG + chr2.3:25105620-25105639 None:intergenic 40.0%
TATCCCAGGTTTCAGATCAA+TGG + chr2.3:25107504-25107523 None:intergenic 40.0%
TCATGTGATTATCGTTACGG+AGG - chr2.3:25105590-25105609 MS.gene063457:CDS 40.0%
TGCTTAGGATGAACTCCAAT+TGG - chr2.3:25106545-25106564 MS.gene063457:intron 40.0%
TTTCAGCCAAAACAAACCTC+CGG + chr2.3:25107267-25107286 None:intergenic 40.0%
! GATGCAAGCTTTTGACAACA+AGG - chr2.3:25106074-25106093 MS.gene063457:CDS 40.0%
!! GTTTTTGGATGACTGCTCAT+GGG - chr2.3:25107421-25107440 MS.gene063457:CDS 40.0%
!! TGGTGTTGATGGCATACTAT+AGG + chr2.3:25106574-25106593 None:intergenic 40.0%
!!! CTCTGTGCAATTTGGTTTTG+TGG - chr2.3:25106652-25106671 MS.gene063457:intron 40.0%
AAGATTCATTAGTTGGGGGC+AGG + chr2.3:25107015-25107034 None:intergenic 45.0%
AATCTGTTGGGGATTAAGGG+AGG + chr2.3:25105726-25105745 None:intergenic 45.0%
AATGACTGTCTTCCTTACCC+CGG - chr2.3:25107245-25107264 MS.gene063457:CDS 45.0%
ACATTTAACCCTCACCCTCT+AGG - chr2.3:25107193-25107212 MS.gene063457:CDS 45.0%
ATCTGTTGGGGATTAAGGGA+GGG + chr2.3:25105725-25105744 None:intergenic 45.0%
CAAATTGACCTAGAGGGTGA+GGG + chr2.3:25107204-25107223 None:intergenic 45.0%
TCTTAGAGGCCCCAAAACTT+CGG - chr2.3:25105996-25106015 MS.gene063457:CDS 45.0%
TGATTGTCTTAGGGTCATCG+AGG - chr2.3:25106888-25106907 MS.gene063457:intron 45.0%
TTCAGCCAAAACAAACCTCC+GGG + chr2.3:25107266-25107285 None:intergenic 45.0%
TTTGTGATGTGAACGAGCGT+AGG - chr2.3:25105903-25105922 MS.gene063457:intron 45.0%
! ACGTAGAACCCGAAGTTTTG+GGG + chr2.3:25106008-25106027 None:intergenic 45.0%
! CACGTAGAACCCGAAGTTTT+GGG + chr2.3:25106009-25106028 None:intergenic 45.0%
! TGTGAACGAGCGTAGGATTT+TGG - chr2.3:25105910-25105929 MS.gene063457:intron 45.0%
!! ATGGTGGTAGCTTTGATGAG+TGG - chr2.3:25107540-25107559 MS.gene063457:CDS 45.0%
!! GGTTTTTGGATGACTGCTCA+TGG - chr2.3:25107420-25107439 MS.gene063457:CDS 45.0%
!! TGGTGGTAGCTTTGATGAGT+GGG - chr2.3:25107541-25107560 MS.gene063457:CDS 45.0%
!! AATTCTTTATATAAATTATT+TGG + chr2.3:25106786-25106805 None:intergenic 5.0%
CAAAACAAACCTCCGGGGTA+AGG + chr2.3:25107260-25107279 None:intergenic 50.0%
CCAAATTGACCTAGAGGGTG+AGG + chr2.3:25107205-25107224 None:intergenic 50.0%
CCTCACCCTCTAGGTCAATT+TGG - chr2.3:25107202-25107221 MS.gene063457:CDS 50.0%
CTTAGAGGCCCCAAAACTTC+GGG - chr2.3:25105997-25106016 MS.gene063457:CDS 50.0%
TCAGCCAAAACAAACCTCCG+GGG + chr2.3:25107265-25107284 None:intergenic 50.0%
TGCCTGAGAGTTGTGCAAGT+GGG - chr2.3:25105501-25105520 MS.gene063457:CDS 50.0%
TGTGCAAGTGGGGATGTTGT+GGG - chr2.3:25105512-25105531 MS.gene063457:CDS 50.0%
TTGCCTGAGAGTTGTGCAAG+TGG - chr2.3:25105500-25105519 MS.gene063457:CDS 50.0%
TTGTGCAAGTGGGGATGTTG+TGG - chr2.3:25105511-25105530 MS.gene063457:CDS 50.0%
TTGTGGCTGACACACCTACA+CGG + chr2.3:25107296-25107315 None:intergenic 50.0%
! GCACGTAGAACCCGAAGTTT+TGG + chr2.3:25106010-25106029 None:intergenic 50.0%
! GGTCATCGAGGTTCTAGCAT+GGG - chr2.3:25106900-25106919 MS.gene063457:CDS 50.0%
!! CTTACCCCGGAGGTTTGTTT+TGG - chr2.3:25107258-25107277 MS.gene063457:CDS 50.0%
CAAGTGGGGATGTTGTGGGT+TGG - chr2.3:25105516-25105535 MS.gene063457:CDS 55.0%
GCCTGAGAGTTGTGCAAGTG+GGG - chr2.3:25105502-25105521 MS.gene063457:CDS 55.0%
GGCTGAAAAGAGACCCGTGT+AGG - chr2.3:25107279-25107298 MS.gene063457:CDS 55.0%
TCCCCACTTGCACAACTCTC+AGG + chr2.3:25105506-25105525 None:intergenic 55.0%
TGTGGCTGACACACCTACAC+GGG + chr2.3:25107295-25107314 None:intergenic 55.0%
! GGGTCATCGAGGTTCTAGCA+TGG - chr2.3:25106899-25106918 MS.gene063457:CDS 55.0%
!! GGGATGTTGTGGGTTGGATG+AGG - chr2.3:25105522-25105541 MS.gene063457:CDS 55.0%
GACTGTCTTCCTTACCCCGG+AGG - chr2.3:25107248-25107267 MS.gene063457:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 25105437 25107580 25105437 ID=MS.gene063457
chr2.3 mRNA 25105437 25107580 25105437 ID=MS.gene063457.t1;Parent=MS.gene063457
chr2.3 exon 25106891 25107580 25106891 ID=MS.gene063457.t1.exon1;Parent=MS.gene063457.t1
chr2.3 CDS 25106891 25107580 25106891 ID=cds.MS.gene063457.t1;Parent=MS.gene063457.t1
chr2.3 exon 25105968 25106117 25105968 ID=MS.gene063457.t1.exon2;Parent=MS.gene063457.t1
chr2.3 CDS 25105968 25106117 25105968 ID=cds.MS.gene063457.t1;Parent=MS.gene063457.t1
chr2.3 exon 25105437 25105802 25105437 ID=MS.gene063457.t1.exon3;Parent=MS.gene063457.t1
chr2.3 CDS 25105437 25105802 25105437 ID=cds.MS.gene063457.t1;Parent=MS.gene063457.t1
Gene Sequence

>MS.gene063457

ATGATGATTACATCAAATATTGACAATCATATTGGTCCCTTGAAGAGTTGTAGCATTAGACACTTGCCTGAGAGTTGTGCAAGTGGGGATGTTGTGGGTTGGATGAGGAACTTACTAGAAAAAAGGGTGATGAAGGTTTCAATAGAACGTGATTCATGTGATTATCGTTACGGAGGAATACCAGACTTGATTGAAAGGAATGCGGCATCAACCATTGATTTACCTTTTGAGGTTTTCTCCAGTTTTAAGGTTCTTGAGTTGAAGAACTATCATTTTTTAACTACACCCTCCCTTAATCCCCAACAGATTTTGAATACTCTCACTCTTAACAAAGTGCATATTATATCAAACACTTTTCATGATATTCTCTCTCACTGTTCATCTCTTGAAAATCTTATCATTGAGAAATGTGATTTTGTAACAGATGAGGTTAAGATTGTAAGTCCAAGCCTCAAATATATTAAAATTTGTGATGTGAACGAGCGTAGGATTTTGGTTTCTGCACTTAACATGGAAGTCATAGAGATCGGCTCTGTTATTTGTAATCATGAAGATCTGATCTTAGAGGCCCCAAAACTTCGGGTTCTACGTGCTTACAATAATGTTCAAATGCTTGGACAAAATGTTTTTATAGATGGATGCAAGCTTTTGACAACAAGGGATATTATTGAAATTTGTGGTGGCATTTTGGTAAGTGTTTCCTCTACTATACTTCACTTGGAAAGTTAAACAATGTCAATTTTTTGATTGATGTGTATATTACATTTCTTTCTAGTTAATAGAGGTGCATGTAATCTAATGTTTTAAATTTTTGCTGCATTACAATTCTACTAGGATATATATAAAATTTAATATATGGTTCATATTCAATTACAATTGGATGTTACAATCATGTACATAGATGCAAACATTAAGATTAACATGCGAGTCAAGGATAATGATTAAAATTTAATATCCCTAATGCAAGTATGATTCCCTTTTGAGCCATCACAAAAAATCACACTTATTGGGTAATACTCCATATAAAAAGTTCATAGCTTATTATATGTGGACTAATTGAGTAATTGTGATAGGATAATAAAACTTGTTGTTTATGGTATCTATTTAATGCTTAGGATGAACTCCAATTGGTAACCTATAGTATGCCATCAACACCATATTGAATAGTAATAAAGCCTTCCTCATGCTACAAATATTGATTAGAGTTAGAAAACTCTCTGTGCAATTTGGTTTTGTGGCTTTGAAAAATATCATGTAAAAATTAGACAATTATATTTTAATTTTTGACCTATCATGAGTATCTATTGTTTAGATCATTAAGTAATGCTAATTAAATTTTACAACAACCAAATAATTTATATAAAGAATTGAAATTTTGGTTGTATCATCAAAATGTAACATTACTATATTTTATGAACATTTATGTCTATTTGTTTTATAATTATATTTTATGATTGTCTTAGGGTCATCGAGGTTCTAGCATGGGAAGTATCTTTAAAAATTTGGTTACCCTTTGCCTCGATTTTGAATTGAATGGTAATAGAAATGCCATAGCTCTTTCTTTTGCACTCAAGTCCTGCCCCCAACTAATGAATCTTCAAATAAATAACCGGGTATGCTTATAATTAATTTAGCCATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATTTCTCGTATTTTTTATTTTAGTTTGATCATTATTGCAGTCATTATGCTTAACTATATTTTTTTTGACATTTAACCCTCACCCTCTAGGTCAATTTGGATTACTATGATCAAAATGACAATGACTGTCTTCCTTACCCCGGAGGTTTGTTTTGGCTGAAAAGAGACCCGTGTAGGTGTGTCAGCCACAACCTAAAGAATGTTTGTATAAAGGGATACAAAGGTGGAGAGTTTGAAATTGAATTTGTTAAGTACTTAATATTAAATGGAGGAGTTATGAATAATATTACAATTTGGTTTTTGGATGACTGCTCATGGGATGAAGTCGTAGCAACTGCCTGTTTACAGTCATATCTGAAGCACTCTCCGAAATTATCCATTGATCTGAAACCTGGGATAGAGTATATAAGAAAATATGGTGGTAGCTTTGATGAGTGGGTCCGAACCCTAAAATAA
Protein sequence

>MS.gene063457.t1

MMITSNIDNHIGPLKSCSIRHLPESCASGDVVGWMRNLLEKRVMKVSIERDSCDYRYGGIPDLIERNAASTIDLPFEVFSSFKVLELKNYHFLTTPSLNPQQILNTLTLNKVHIISNTFHDILSHCSSLENLIIEKCDFVTDEVKIVSPSLKYIKICDVNERRILVSALNMEVIEIGSVICNHEDLILEAPKLRVLRAYNNVQMLGQNVFIDGCKLLTTRDIIEICGGILGHRGSSMGSIFKNLVTLCLDFELNGNRNAIALSFALKSCPQLMNLQINNRVNLDYYDQNDNDCLPYPGGLFWLKRDPCRCVSHNLKNVCIKGYKGGEFEIEFVKYLILNGGVMNNITIWFLDDCSWDEVVATACLQSYLKHSPKLSIDLKPGIEYIRKYGGSFDEWVRTLK