Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063503.t1 | KEH32038.1 | 96.7 | 307 | 5 | 5 | 1 | 304 | 1 | 305 | 3.60E-154 | 554.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063503.t1 | Q9FME3 | 77.9 | 95 | 20 | 1 | 32 | 125 | 38 | 132 | 2.4e-37 | 157.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063503.t1 | A0A072USI6 | 96.7 | 307 | 5 | 5 | 1 | 304 | 1 | 305 | 2.6e-154 | 554.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene063503.t1 | TF | TCP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene053074 | MS.gene063503 | 0.803905 | 2.79E-49 | -1.69E-46 |
MS.gene054184 | MS.gene063503 | 0.840318 | 9.35E-58 | -1.69E-46 |
MS.gene054185 | MS.gene063503 | 0.842855 | 2.00E-58 | -1.69E-46 |
MS.gene055133 | MS.gene063503 | 0.800552 | 1.37E-48 | -1.69E-46 |
MS.gene055604 | MS.gene063503 | 0.803906 | 2.79E-49 | -1.69E-46 |
MS.gene057754 | MS.gene063503 | 0.808217 | 3.45E-50 | -1.69E-46 |
MS.gene057809 | MS.gene063503 | 0.800064 | 1.72E-48 | -1.69E-46 |
MS.gene059124 | MS.gene063503 | 0.824552 | 7.59E-54 | -1.69E-46 |
MS.gene059421 | MS.gene063503 | 0.805319 | 1.41E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063503.t1 | MTR_4g109660 | 96.743 | 307 | 5 | 5 | 1 | 304 | 1 | 305 | 0.0 | 583 |
MS.gene063503.t1 | MTR_3g026050 | 43.478 | 368 | 128 | 14 | 4 | 297 | 3 | 364 | 2.82e-61 | 199 |
MS.gene063503.t1 | MTR_7g015010 | 61.017 | 118 | 45 | 1 | 1 | 117 | 1 | 118 | 1.64e-43 | 152 |
MS.gene063503.t1 | MTR_6g015350 | 71.429 | 84 | 24 | 0 | 38 | 121 | 31 | 114 | 1.49e-37 | 136 |
MS.gene063503.t1 | MTR_8g463380 | 52.809 | 89 | 42 | 0 | 29 | 117 | 27 | 115 | 3.20e-22 | 96.7 |
MS.gene063503.t1 | MTR_4g079580 | 54.321 | 81 | 37 | 0 | 49 | 129 | 15 | 95 | 4.94e-22 | 94.7 |
MS.gene063503.t1 | MTR_2g090960 | 61.765 | 68 | 26 | 0 | 50 | 117 | 18 | 85 | 2.97e-21 | 92.4 |
MS.gene063503.t1 | MTR_2g078200 | 58.824 | 68 | 28 | 0 | 50 | 117 | 14 | 81 | 3.67e-20 | 89.0 |
MS.gene063503.t1 | MTR_1g103380 | 50.000 | 60 | 30 | 0 | 55 | 114 | 200 | 259 | 2.52e-12 | 67.4 |
MS.gene063503.t1 | MTR_7g018500 | 49.123 | 57 | 29 | 0 | 58 | 114 | 122 | 178 | 4.08e-12 | 66.6 |
MS.gene063503.t1 | MTR_6g017055 | 48.276 | 58 | 30 | 0 | 57 | 114 | 127 | 184 | 6.09e-12 | 66.2 |
MS.gene063503.t1 | MTR_4g111935 | 48.276 | 58 | 30 | 0 | 57 | 114 | 133 | 190 | 7.93e-12 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063503.t1 | AT5G60970 | 80.682 | 88 | 16 | 1 | 39 | 125 | 45 | 132 | 3.51e-46 | 160 |
MS.gene063503.t1 | AT3G02150 | 38.652 | 282 | 124 | 11 | 10 | 267 | 28 | 284 | 3.05e-44 | 154 |
MS.gene063503.t1 | AT3G02150 | 44.019 | 209 | 100 | 7 | 10 | 201 | 28 | 236 | 3.37e-44 | 152 |
MS.gene063503.t1 | AT5G08070 | 63.810 | 105 | 34 | 2 | 21 | 125 | 2 | 102 | 6.45e-40 | 140 |
MS.gene063503.t1 | AT5G08070 | 63.810 | 105 | 34 | 2 | 21 | 125 | 2 | 102 | 6.45e-40 | 140 |
MS.gene063503.t1 | AT1G30210 | 55.752 | 113 | 44 | 3 | 8 | 118 | 4 | 112 | 3.35e-30 | 117 |
MS.gene063503.t1 | AT1G30210 | 55.752 | 113 | 44 | 3 | 8 | 118 | 4 | 112 | 3.35e-30 | 117 |
MS.gene063503.t1 | AT4G18390 | 68.493 | 73 | 23 | 0 | 46 | 118 | 32 | 104 | 2.63e-28 | 112 |
MS.gene063503.t1 | AT4G18390 | 68.493 | 73 | 23 | 0 | 46 | 118 | 32 | 104 | 2.63e-28 | 112 |
MS.gene063503.t1 | AT1G53230 | 58.228 | 79 | 30 | 1 | 50 | 125 | 43 | 121 | 2.24e-23 | 99.4 |
MS.gene063503.t1 | AT1G53230 | 58.228 | 79 | 30 | 1 | 50 | 125 | 43 | 121 | 2.24e-23 | 99.4 |
MS.gene063503.t1 | AT3G15030 | 61.765 | 68 | 26 | 0 | 50 | 117 | 39 | 106 | 3.49e-22 | 96.3 |
MS.gene063503.t1 | AT3G15030 | 61.765 | 68 | 26 | 0 | 50 | 117 | 39 | 106 | 3.49e-22 | 96.3 |
MS.gene063503.t1 | AT3G15030 | 61.765 | 68 | 26 | 0 | 50 | 117 | 39 | 106 | 3.49e-22 | 96.3 |
MS.gene063503.t1 | AT3G15030 | 61.765 | 68 | 26 | 0 | 50 | 117 | 39 | 106 | 3.49e-22 | 96.3 |
MS.gene063503.t1 | AT2G31070 | 61.538 | 65 | 25 | 0 | 50 | 114 | 23 | 87 | 2.19e-20 | 90.5 |
MS.gene063503.t1 | AT1G68800 | 46.269 | 67 | 36 | 0 | 48 | 114 | 104 | 170 | 1.10e-14 | 73.9 |
MS.gene063503.t1 | AT1G68800 | 46.269 | 67 | 36 | 0 | 48 | 114 | 104 | 170 | 1.16e-14 | 73.9 |
MS.gene063503.t1 | AT1G67260 | 41.429 | 70 | 41 | 0 | 45 | 114 | 76 | 145 | 5.94e-14 | 72.0 |
MS.gene063503.t1 | AT1G67260 | 41.429 | 70 | 41 | 0 | 45 | 114 | 76 | 145 | 5.94e-14 | 72.0 |
MS.gene063503.t1 | AT1G67260 | 41.429 | 70 | 41 | 0 | 45 | 114 | 76 | 145 | 7.28e-14 | 71.6 |
MS.gene063503.t1 | AT3G18550 | 39.024 | 82 | 49 | 1 | 33 | 114 | 126 | 206 | 1.72e-12 | 67.8 |
MS.gene063503.t1 | AT3G18550 | 39.024 | 82 | 49 | 1 | 33 | 114 | 126 | 206 | 1.76e-12 | 67.8 |
MS.gene063503.t1 | AT3G18550 | 39.024 | 82 | 49 | 1 | 33 | 114 | 126 | 206 | 1.76e-12 | 67.8 |
MS.gene063503.t1 | AT3G18550 | 39.024 | 82 | 49 | 1 | 33 | 114 | 126 | 206 | 2.25e-12 | 67.8 |
Find 52 sgRNAs with CRISPR-Local
Find 59 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGTCTAAACGGCGAATTTAT+TGG | 0.202116 | 8.4:+17992641 | None:intergenic |
GAAATAAATTACCATGATTA+TGG | 0.231308 | 8.4:+17992906 | None:intergenic |
ACTCTATCTTTATCACAATT+TGG | 0.233467 | 8.4:-17992932 | MS.gene063503:CDS |
CGTGACACTCTCACTATTCT+TGG | 0.252002 | 8.4:+17993352 | None:intergenic |
TACTACCTGGTTGCTGAAAT+AGG | 0.258592 | 8.4:+17993101 | None:intergenic |
CTACCATAACTACCCATTTC+TGG | 0.267833 | 8.4:+17992568 | None:intergenic |
AGCAAAGTTTGCACAATTAG+AGG | 0.305586 | 8.4:-17993304 | MS.gene063503:CDS |
TGATGTAGCTATTGCTTTGT+TGG | 0.307657 | 8.4:+17993399 | None:intergenic |
CTTGAAGGATCCAAGTTATA+TGG | 0.309016 | 8.4:+17992956 | None:intergenic |
GTGAGAGTGTCACGTTCTTT+AGG | 0.317533 | 8.4:-17993343 | MS.gene063503:CDS |
GATCATAATAACACCAGAAA+TGG | 0.326102 | 8.4:-17992581 | MS.gene063503:CDS |
ACTTTCAGCTTCTTTACCTT+TGG | 0.338139 | 8.4:+17993036 | None:intergenic |
GATTAAGAGACCGTAGGATT+AGG | 0.348209 | 8.4:-17993282 | MS.gene063503:CDS |
TGTGAATTACCAGATGAATT+AGG | 0.362279 | 8.4:+17992818 | None:intergenic |
ACTACCTGGTTGCTGAAATA+GGG | 0.363637 | 8.4:+17993102 | None:intergenic |
AATACTAATTATTCATCAAA+TGG | 0.403938 | 8.4:-17992989 | MS.gene063503:CDS |
CTAGTACTTATTTGATAAGA+AGG | 0.404054 | 8.4:+17992884 | None:intergenic |
TTTATTGGAAGATGAATAGT+TGG | 0.406511 | 8.4:+17992656 | None:intergenic |
ATATCACTACTTTCCATTGA+AGG | 0.421398 | 8.4:+17992734 | None:intergenic |
AGAAGCTGAAAGTTCAGAAA+AGG | 0.433467 | 8.4:-17993026 | MS.gene063503:CDS |
TACTCTGAATGCTCCTTCAA+TGG | 0.440393 | 8.4:-17992747 | MS.gene063503:CDS |
TTGACAGTACCTAATTCATC+TGG | 0.458238 | 8.4:-17992827 | MS.gene063503:CDS |
AACCTAGCAAAGTTGTTGAA+TGG | 0.462940 | 8.4:-17993201 | MS.gene063503:CDS |
AGTGTTGGATGGCGTCTAAA+CGG | 0.463809 | 8.4:+17992629 | None:intergenic |
GGATCCAAGTTATATGGAAA+AGG | 0.479271 | 8.4:+17992962 | None:intergenic |
ATCATAATAACACCAGAAAT+GGG | 0.498797 | 8.4:-17992580 | MS.gene063503:CDS |
TGTTGCTGAGTGAAACTTTG+AGG | 0.500197 | 8.4:+17993127 | None:intergenic |
ATGATCTGAATCAAGAAGCT+TGG | 0.500537 | 8.4:+17992598 | None:intergenic |
ATTCAAGATCTGAACATGGT+TGG | 0.505156 | 8.4:+17992700 | None:intergenic |
AGAAGGTGAACATGGAAGAA+TGG | 0.508923 | 8.4:-17993437 | MS.gene063503:CDS |
GATAAAGATAGAGTACTTGA+AGG | 0.512410 | 8.4:+17992941 | None:intergenic |
AACCATTCAACAACTTTGCT+AGG | 0.525009 | 8.4:+17993199 | None:intergenic |
GAAGCTGAAAGTTCAGAAAA+GGG | 0.530447 | 8.4:-17993025 | MS.gene063503:CDS |
AGCTTGGAACTAAACAGTGT+TGG | 0.544286 | 8.4:+17992614 | None:intergenic |
TCATATAACTGAATTGCTGT+TGG | 0.568969 | 8.4:+17993250 | None:intergenic |
AGAGTGTCACGTTCTTTAGG+AGG | 0.573587 | 8.4:-17993340 | MS.gene063503:CDS |
TATGGTATGAATCAAACCAA+AGG | 0.575151 | 8.4:-17993052 | MS.gene063503:CDS |
CAATTTGGAAGCCATAATCA+TGG | 0.577888 | 8.4:-17992917 | MS.gene063503:CDS |
TATGATCTTCAAGATAGACT+TGG | 0.589871 | 8.4:-17993232 | MS.gene063503:CDS |
ACAAAACAAGAAGGTGAACA+TGG | 0.590894 | 8.4:-17993445 | MS.gene063503:CDS |
AAAGAAGCAACAAAACAAGA+AGG | 0.599775 | 8.4:-17993454 | MS.gene063503:CDS |
GTACAGACAACCTAATCCTA+CGG | 0.604529 | 8.4:+17993272 | None:intergenic |
TCTTATCAAATAAGTACTAG+TGG | 0.608228 | 8.4:-17992881 | MS.gene063503:CDS |
TGGAATGAAAGAACTAGTTG+AGG | 0.611182 | 8.4:+17992676 | None:intergenic |
GATGGCAATGGCATAACAGA+AGG | 0.624451 | 8.4:+17992782 | None:intergenic |
TGGAACTAAACAGTGTTGGA+TGG | 0.631286 | 8.4:+17992618 | None:intergenic |
AAACTTTGAGGAATATCAAG+TGG | 0.636206 | 8.4:+17993139 | None:intergenic |
CAATAGCTACATCAAGACAA+TGG | 0.639730 | 8.4:-17993390 | MS.gene063503:CDS |
CTTTGAGGAATATCAAGTGG+TGG | 0.640320 | 8.4:+17993142 | None:intergenic |
CAAACCCTATTTCAGCAACC+AGG | 0.642234 | 8.4:-17993106 | MS.gene063503:CDS |
TTAGAGGATTAAGAGACCGT+AGG | 0.643012 | 8.4:-17993288 | MS.gene063503:CDS |
AGGAATTCAAGATCTGAACA+TGG | 0.663463 | 8.4:+17992696 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATACTAATTATTCATCAAA+TGG | - | chr8.4:17993072-17993091 | MS.gene063503:CDS | 15.0% |
!! | GAAATAAATTACCATGATTA+TGG | + | chr8.4:17993158-17993177 | None:intergenic | 20.0% |
! | ACTCTATCTTTATCACAATT+TGG | - | chr8.4:17993129-17993148 | MS.gene063503:CDS | 25.0% |
! | ATCATAATAACACCAGAAAT+GGG | - | chr8.4:17993481-17993500 | MS.gene063503:CDS | 25.0% |
! | CTAGTACTTATTTGATAAGA+AGG | + | chr8.4:17993180-17993199 | None:intergenic | 25.0% |
! | TCTTATCAAATAAGTACTAG+TGG | - | chr8.4:17993180-17993199 | MS.gene063503:CDS | 25.0% |
! | TTTATTGGAAGATGAATAGT+TGG | + | chr8.4:17993408-17993427 | None:intergenic | 25.0% |
!! | TTTTCCTTTTCCATATAACT+TGG | - | chr8.4:17993095-17993114 | MS.gene063503:CDS | 25.0% |
AAAGAAGCAACAAAACAAGA+AGG | - | chr8.4:17992607-17992626 | MS.gene063503:CDS | 30.0% | |
ATATCACTACTTTCCATTGA+AGG | + | chr8.4:17993330-17993349 | None:intergenic | 30.0% | |
GATCATAATAACACCAGAAA+TGG | - | chr8.4:17993480-17993499 | MS.gene063503:CDS | 30.0% | |
TATGATCTTCAAGATAGACT+TGG | - | chr8.4:17992829-17992848 | MS.gene063503:CDS | 30.0% | |
TATGGTATGAATCAAACCAA+AGG | - | chr8.4:17993009-17993028 | MS.gene063503:CDS | 30.0% | |
TCATATAACTGAATTGCTGT+TGG | + | chr8.4:17992814-17992833 | None:intergenic | 30.0% | |
TGTGAATTACCAGATGAATT+AGG | + | chr8.4:17993246-17993265 | None:intergenic | 30.0% | |
! | AAACTTTGAGGAATATCAAG+TGG | + | chr8.4:17992925-17992944 | None:intergenic | 30.0% |
! | AGAGTACTAGTAAAAAGTGA+TGG | + | chr8.4:17993300-17993319 | None:intergenic | 30.0% |
! | GATAAAGATAGAGTACTTGA+AGG | + | chr8.4:17993123-17993142 | None:intergenic | 30.0% |
AACCATTCAACAACTTTGCT+AGG | + | chr8.4:17992865-17992884 | None:intergenic | 35.0% | |
AACCTAGCAAAGTTGTTGAA+TGG | - | chr8.4:17992860-17992879 | MS.gene063503:CDS | 35.0% | |
ACAAAACAAGAAGGTGAACA+TGG | - | chr8.4:17992616-17992635 | MS.gene063503:CDS | 35.0% | |
ACTTTCAGCTTCTTTACCTT+TGG | + | chr8.4:17993028-17993047 | None:intergenic | 35.0% | |
AGAAGCTGAAAGTTCAGAAA+AGG | - | chr8.4:17993035-17993054 | MS.gene063503:CDS | 35.0% | |
AGAGAAAAACAAGTACTACC+TGG | + | chr8.4:17992976-17992995 | None:intergenic | 35.0% | |
AGCAAAGTTTGCACAATTAG+AGG | - | chr8.4:17992757-17992776 | MS.gene063503:CDS | 35.0% | |
AGGAATTCAAGATCTGAACA+TGG | + | chr8.4:17993368-17993387 | None:intergenic | 35.0% | |
ATGATCTGAATCAAGAAGCT+TGG | + | chr8.4:17993466-17993485 | None:intergenic | 35.0% | |
ATTCAAGATCTGAACATGGT+TGG | + | chr8.4:17993364-17993383 | None:intergenic | 35.0% | |
CAATAGCTACATCAAGACAA+TGG | - | chr8.4:17992671-17992690 | MS.gene063503:CDS | 35.0% | |
CAATTTGGAAGCCATAATCA+TGG | - | chr8.4:17993144-17993163 | MS.gene063503:CDS | 35.0% | |
CTAGTAAAAAGTGATGGCAA+TGG | + | chr8.4:17993294-17993313 | None:intergenic | 35.0% | |
CTTGAAGGATCCAAGTTATA+TGG | + | chr8.4:17993108-17993127 | None:intergenic | 35.0% | |
GAAGCTGAAAGTTCAGAAAA+GGG | - | chr8.4:17993036-17993055 | MS.gene063503:CDS | 35.0% | |
GGATCCAAGTTATATGGAAA+AGG | + | chr8.4:17993102-17993121 | None:intergenic | 35.0% | |
TGATGTAGCTATTGCTTTGT+TGG | + | chr8.4:17992665-17992684 | None:intergenic | 35.0% | |
TGGAATGAAAGAACTAGTTG+AGG | + | chr8.4:17993388-17993407 | None:intergenic | 35.0% | |
TTGACAGTACCTAATTCATC+TGG | - | chr8.4:17993234-17993253 | MS.gene063503:CDS | 35.0% | |
!! | AGTACTTGTTTTTCTCTTGG+AGG | - | chr8.4:17992979-17992998 | MS.gene063503:CDS | 35.0% |
!! | GGTAGTACTTGTTTTTCTCT+TGG | - | chr8.4:17992976-17992995 | MS.gene063503:CDS | 35.0% |
ACTACCTGGTTGCTGAAATA+GGG | + | chr8.4:17992962-17992981 | None:intergenic | 40.0% | |
AGAAGGTGAACATGGAAGAA+TGG | - | chr8.4:17992624-17992643 | MS.gene063503:CDS | 40.0% | |
AGCTTGGAACTAAACAGTGT+TGG | + | chr8.4:17993450-17993469 | None:intergenic | 40.0% | |
CGTCTAAACGGCGAATTTAT+TGG | + | chr8.4:17993423-17993442 | None:intergenic | 40.0% | |
GATTAAGAGACCGTAGGATT+AGG | - | chr8.4:17992779-17992798 | MS.gene063503:CDS | 40.0% | |
GTACAGACAACCTAATCCTA+CGG | + | chr8.4:17992792-17992811 | None:intergenic | 40.0% | |
TACTACCTGGTTGCTGAAAT+AGG | + | chr8.4:17992963-17992982 | None:intergenic | 40.0% | |
TACTCTGAATGCTCCTTCAA+TGG | - | chr8.4:17993314-17993333 | MS.gene063503:CDS | 40.0% | |
TGTTGCTGAGTGAAACTTTG+AGG | + | chr8.4:17992937-17992956 | None:intergenic | 40.0% | |
TTAGAGGATTAAGAGACCGT+AGG | - | chr8.4:17992773-17992792 | MS.gene063503:CDS | 40.0% | |
! | CTTTGAGGAATATCAAGTGG+TGG | + | chr8.4:17992922-17992941 | None:intergenic | 40.0% |
! | TCTCTTGGAGGTGGTTTTTA+TGG | - | chr8.4:17992991-17993010 | MS.gene063503:CDS | 40.0% |
! | TGGAACTAAACAGTGTTGGA+TGG | + | chr8.4:17993446-17993465 | None:intergenic | 40.0% |
!! | ACTTGTTTTTCTCTTGGAGG+TGG | - | chr8.4:17992982-17993001 | MS.gene063503:CDS | 40.0% |
CAAACCCTATTTCAGCAACC+AGG | - | chr8.4:17992955-17992974 | MS.gene063503:CDS | 45.0% | |
CGTGACACTCTCACTATTCT+TGG | + | chr8.4:17992712-17992731 | None:intergenic | 45.0% | |
GATGGCAATGGCATAACAGA+AGG | + | chr8.4:17993282-17993301 | None:intergenic | 45.0% | |
! | AGAGTGTCACGTTCTTTAGG+AGG | - | chr8.4:17992721-17992740 | MS.gene063503:CDS | 45.0% |
! | AGTGTTGGATGGCGTCTAAA+CGG | + | chr8.4:17993435-17993454 | None:intergenic | 45.0% |
!! | GTGAGAGTGTCACGTTCTTT+AGG | - | chr8.4:17992718-17992737 | MS.gene063503:CDS | 45.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 17992577 | 17993506 | 17992577 | ID=MS.gene063503 |
chr8.4 | mRNA | 17992577 | 17993506 | 17992577 | ID=MS.gene063503.t1;Parent=MS.gene063503 |
chr8.4 | exon | 17992577 | 17993506 | 17992577 | ID=MS.gene063503.t1.exon1;Parent=MS.gene063503.t1 |
chr8.4 | CDS | 17992577 | 17993506 | 17992577 | ID=cds.MS.gene063503.t1;Parent=MS.gene063503.t1 |
Gene Sequence |
Protein sequence |