Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063967.t1 | XP_003614161.1 | 99.3 | 405 | 3 | 0 | 1 | 405 | 1 | 405 | 4.90E-220 | 773.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063967.t1 | Q9ZPR4 | 64.6 | 396 | 130 | 4 | 17 | 404 | 27 | 420 | 2.5e-127 | 456.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063967.t1 | G7JZ40 | 99.3 | 405 | 3 | 0 | 1 | 405 | 1 | 405 | 3.6e-220 | 773.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene067486 | MS.gene063967 | PPI |
| MS.gene024949 | MS.gene063967 | PPI |
| MS.gene90372 | MS.gene063967 | PPI |
| MS.gene92350 | MS.gene063967 | PPI |
| MS.gene83528 | MS.gene063967 | PPI |
| MS.gene90371 | MS.gene063967 | PPI |
| MS.gene071246 | MS.gene063967 | PPI |
| MS.gene40181 | MS.gene063967 | PPI |
| MS.gene046935 | MS.gene063967 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063967.t1 | MTR_5g045590 | 99.259 | 405 | 3 | 0 | 1 | 405 | 1 | 405 | 0.0 | 825 |
| MS.gene063967.t1 | MTR_2g105270 | 52.941 | 425 | 152 | 5 | 20 | 404 | 31 | 447 | 5.77e-143 | 414 |
| MS.gene063967.t1 | MTR_2g105270 | 53.714 | 350 | 114 | 5 | 20 | 329 | 31 | 372 | 2.58e-108 | 325 |
| MS.gene063967.t1 | MTR_2g105270 | 51.940 | 335 | 113 | 5 | 20 | 314 | 31 | 357 | 1.25e-97 | 296 |
| MS.gene063967.t1 | MTR_5g005240 | 40.092 | 434 | 207 | 8 | 19 | 403 | 14 | 443 | 4.95e-96 | 295 |
| MS.gene063967.t1 | MTR_8g088670 | 39.900 | 401 | 182 | 9 | 32 | 403 | 50 | 420 | 2.64e-83 | 261 |
| MS.gene063967.t1 | MTR_1g040495 | 39.370 | 381 | 181 | 7 | 40 | 400 | 15 | 365 | 1.60e-79 | 249 |
| MS.gene063967.t1 | MTR_8g094880 | 36.952 | 433 | 198 | 10 | 22 | 405 | 18 | 424 | 7.93e-75 | 239 |
| MS.gene063967.t1 | MTR_8g094905 | 36.952 | 433 | 198 | 10 | 22 | 405 | 18 | 424 | 7.93e-75 | 239 |
| MS.gene063967.t1 | MTR_1g076210 | 40.806 | 397 | 187 | 6 | 31 | 403 | 16 | 388 | 9.93e-75 | 238 |
| MS.gene063967.t1 | MTR_1g093280 | 40.806 | 397 | 187 | 6 | 31 | 403 | 16 | 388 | 9.93e-75 | 238 |
| MS.gene063967.t1 | MTR_1g106065 | 34.988 | 423 | 227 | 8 | 22 | 403 | 3 | 418 | 1.27e-74 | 238 |
| MS.gene063967.t1 | MTR_7g096170 | 38.619 | 391 | 194 | 6 | 32 | 400 | 17 | 383 | 8.48e-71 | 228 |
| MS.gene063967.t1 | MTR_7g096170 | 40.395 | 354 | 166 | 5 | 32 | 364 | 17 | 346 | 8.88e-66 | 214 |
| MS.gene063967.t1 | MTR_8g088670 | 40.323 | 310 | 130 | 7 | 32 | 314 | 50 | 331 | 8.92e-60 | 198 |
| MS.gene063967.t1 | MTR_8g088670 | 39.490 | 314 | 135 | 7 | 32 | 318 | 50 | 335 | 9.74e-60 | 197 |
| MS.gene063967.t1 | MTR_7g096170 | 40.252 | 318 | 145 | 5 | 32 | 328 | 17 | 310 | 6.73e-54 | 181 |
| MS.gene063967.t1 | MTR_7g096170 | 39.850 | 266 | 135 | 4 | 136 | 400 | 45 | 286 | 8.65e-45 | 157 |
| MS.gene063967.t1 | MTR_1g040475 | 40.796 | 201 | 103 | 3 | 27 | 211 | 4 | 204 | 1.20e-33 | 125 |
| MS.gene063967.t1 | MTR_1g076220 | 34.052 | 232 | 91 | 5 | 176 | 403 | 54 | 227 | 3.94e-30 | 116 |
| MS.gene063967.t1 | MTR_1g093370 | 42.105 | 133 | 69 | 3 | 275 | 403 | 37 | 165 | 4.69e-24 | 98.2 |
| MS.gene063967.t1 | MTR_2g059110 | 46.753 | 77 | 41 | 0 | 31 | 107 | 8 | 84 | 3.98e-17 | 76.6 |
| MS.gene063967.t1 | MTR_2g059120 | 53.968 | 63 | 29 | 0 | 45 | 107 | 20 | 82 | 2.25e-14 | 68.9 |
| MS.gene063967.t1 | MTR_2g100150 | 36.667 | 150 | 77 | 5 | 36 | 181 | 12 | 147 | 4.20e-14 | 70.1 |
| MS.gene063967.t1 | MTR_1g040455 | 36.264 | 91 | 57 | 1 | 314 | 403 | 7 | 97 | 9.86e-14 | 67.0 |
| MS.gene063967.t1 | MTR_1g055050 | 42.991 | 107 | 58 | 2 | 121 | 225 | 33 | 138 | 2.90e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063967.t1 | AT2G03620 | 64.394 | 396 | 131 | 4 | 17 | 404 | 27 | 420 | 1.05e-164 | 469 |
| MS.gene063967.t1 | AT2G03620 | 64.394 | 396 | 131 | 4 | 17 | 404 | 27 | 420 | 1.05e-164 | 469 |
| MS.gene063967.t1 | AT1G16010 | 55.802 | 405 | 148 | 4 | 28 | 404 | 40 | 441 | 7.21e-148 | 427 |
| MS.gene063967.t1 | AT1G16010 | 55.802 | 405 | 148 | 4 | 28 | 404 | 40 | 441 | 7.21e-148 | 427 |
| MS.gene063967.t1 | AT1G16010 | 55.802 | 405 | 148 | 4 | 28 | 404 | 40 | 441 | 7.21e-148 | 427 |
| MS.gene063967.t1 | AT1G80900 | 52.955 | 423 | 149 | 4 | 20 | 404 | 32 | 442 | 8.98e-148 | 427 |
| MS.gene063967.t1 | AT1G80900 | 52.955 | 423 | 149 | 4 | 20 | 404 | 32 | 442 | 8.98e-148 | 427 |
| MS.gene063967.t1 | AT3G19640 | 41.096 | 438 | 184 | 11 | 40 | 403 | 46 | 483 | 2.46e-89 | 278 |
| MS.gene063967.t1 | AT5G09690 | 40.657 | 396 | 192 | 4 | 26 | 403 | 25 | 395 | 2.63e-89 | 276 |
| MS.gene063967.t1 | AT5G09690 | 40.657 | 396 | 192 | 4 | 26 | 403 | 14 | 384 | 2.88e-89 | 275 |
| MS.gene063967.t1 | AT5G09690 | 41.144 | 367 | 173 | 4 | 26 | 375 | 25 | 365 | 1.90e-83 | 260 |
| MS.gene063967.t1 | AT3G58970 | 37.750 | 400 | 200 | 7 | 32 | 403 | 56 | 434 | 3.90e-78 | 248 |
| MS.gene063967.t1 | AT5G09690 | 42.424 | 330 | 148 | 3 | 26 | 338 | 14 | 318 | 1.44e-72 | 230 |
| MS.gene063967.t1 | AT5G09690 | 42.424 | 330 | 148 | 3 | 26 | 338 | 25 | 329 | 1.78e-72 | 230 |
| MS.gene063967.t1 | AT5G09690 | 42.424 | 330 | 148 | 3 | 26 | 338 | 25 | 329 | 1.78e-72 | 230 |
| MS.gene063967.t1 | AT5G09690 | 42.424 | 330 | 148 | 3 | 26 | 338 | 14 | 318 | 2.48e-72 | 229 |
| MS.gene063967.t1 | AT5G09690 | 42.424 | 330 | 148 | 3 | 26 | 338 | 25 | 329 | 2.86e-72 | 230 |
| MS.gene063967.t1 | AT5G09690 | 42.424 | 330 | 148 | 3 | 26 | 338 | 14 | 318 | 2.96e-72 | 229 |
| MS.gene063967.t1 | AT5G64560 | 39.440 | 393 | 183 | 6 | 40 | 403 | 26 | 392 | 9.01e-68 | 220 |
| MS.gene063967.t1 | AT5G09690 | 36.111 | 396 | 195 | 6 | 26 | 403 | 14 | 369 | 1.97e-67 | 218 |
| MS.gene063967.t1 | AT5G64560 | 40.111 | 359 | 161 | 5 | 40 | 370 | 26 | 358 | 1.73e-61 | 203 |
| MS.gene063967.t1 | AT5G09690 | 46.047 | 215 | 95 | 2 | 26 | 223 | 14 | 224 | 3.32e-53 | 179 |
| MS.gene063967.t1 | AT5G09690 | 46.047 | 215 | 95 | 2 | 26 | 223 | 25 | 235 | 5.12e-53 | 179 |
| MS.gene063967.t1 | AT5G09690 | 46.047 | 215 | 95 | 2 | 26 | 223 | 25 | 235 | 5.12e-53 | 179 |
| MS.gene063967.t1 | AT5G09690 | 46.047 | 215 | 95 | 2 | 26 | 223 | 25 | 235 | 5.12e-53 | 179 |
| MS.gene063967.t1 | AT4G28580 | 31.579 | 399 | 214 | 6 | 29 | 403 | 44 | 407 | 2.83e-51 | 177 |
| MS.gene063967.t1 | AT5G09720 | 39.427 | 279 | 138 | 8 | 36 | 301 | 16 | 276 | 7.70e-47 | 162 |
| MS.gene063967.t1 | AT5G09720 | 39.427 | 279 | 138 | 8 | 36 | 301 | 16 | 276 | 7.70e-47 | 162 |
Find 91 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATCTTCCCTTTGAATTT+AGG | 0.088653 | 5.1:+31933343 | MS.gene063967:CDS |
| TGATCTTCCCTTTGAATTTA+GGG | 0.214507 | 5.1:+31933344 | MS.gene063967:CDS |
| GCCGCCGTGGCAGGAGTATT+TGG | 0.234108 | 5.1:+31934901 | MS.gene063967:CDS |
| TTCTGGATTCAATTTGGTTT+TGG | 0.248178 | 5.1:+31934957 | MS.gene063967:CDS |
| CTACTCTTCTGGATTCAATT+TGG | 0.249380 | 5.1:+31934951 | MS.gene063967:CDS |
| ATTTATCCTTCTTCCATATT+AGG | 0.249449 | 5.1:+31932855 | MS.gene063967:CDS |
| AGCCATCTCCCTTCCTAATA+TGG | 0.295338 | 5.1:-31932868 | None:intergenic |
| TTCTAGAGATCTTCGACTAT+TGG | 0.307849 | 5.1:+31932821 | MS.gene063967:CDS |
| TCCCTTTGAATTTAGGGCTC+TGG | 0.324784 | 5.1:+31933350 | MS.gene063967:CDS |
| GAACGTGTTCGAAGATTTAA+AGG | 0.326254 | 5.1:+31934088 | MS.gene063967:CDS |
| TTCCATGACCTCTCTGCTTC+AGG | 0.330823 | 5.1:-31932710 | None:intergenic |
| AATCGCAGGGCTGGTATAAA+AGG | 0.334220 | 5.1:+31932687 | MS.gene063967:CDS |
| GAAGCATCTCAAACTTTATC+AGG | 0.362455 | 5.1:-31934846 | None:intergenic |
| ATTGGAAATTCAAGTAAATA+TGG | 0.367253 | 5.1:+31934451 | MS.gene063967:CDS |
| GAAGAAGGATAAATGAATTT+CGG | 0.372060 | 5.1:-31932846 | None:intergenic |
| ATCTATCAGTACTCTCCTTC+TGG | 0.372524 | 5.1:+31934066 | MS.gene063967:CDS |
| AGTAAATATGGTAGTTCAAC+GGG | 0.377045 | 5.1:+31934463 | MS.gene063967:CDS |
| CCAAGGACTTTCAGCGGCAT+TGG | 0.377986 | 5.1:+31934433 | MS.gene063967:CDS |
| GCAATATTTGCCGCCGTGGC+AGG | 0.398522 | 5.1:+31934892 | MS.gene063967:CDS |
| ATGCACATCTTTAGATTCTC+AGG | 0.428704 | 5.1:+31933392 | MS.gene063967:CDS |
| ATATCCCGTGCTAGATGAAC+TGG | 0.441183 | 5.1:+31934039 | MS.gene063967:CDS |
| ATTTGAAAACAATCATTTGA+AGG | 0.441921 | 5.1:-31934331 | None:intergenic |
| GAGGTCATGGAAGTCGGTCT+TGG | 0.450393 | 5.1:+31932721 | MS.gene063967:CDS |
| TTGTCAACCTTGAACAAATC+CGG | 0.460150 | 5.1:+31932895 | MS.gene063967:CDS |
| GATTTGACAGGTAAATGAAC+TGG | 0.464980 | 5.1:+31934006 | MS.gene063967:intron |
| CCAATGCCGCTGAAAGTCCT+TGG | 0.466774 | 5.1:-31934433 | None:intergenic |
| TAGGGCTCTGGAGTTAGCTC+TGG | 0.466890 | 5.1:+31933362 | MS.gene063967:CDS |
| TTTCAAATTCGTTCACCATC+GGG | 0.472477 | 5.1:+31934346 | MS.gene063967:CDS |
| GTATCTAAAATAGAATAGTA+AGG | 0.476408 | 5.1:-31935016 | None:intergenic |
| TTTGACTCAGCGAGTTCAAA+AGG | 0.483080 | 5.1:+31934123 | MS.gene063967:CDS |
| TTAACAGGCAAGCGAATCGC+AGG | 0.485254 | 5.1:+31932673 | MS.gene063967:CDS |
| TCACCAGAGCGGTCACTTAG+TGG | 0.486329 | 5.1:+31934397 | MS.gene063967:CDS |
| CTCCAGAGCCCTAAATTCAA+AGG | 0.486570 | 5.1:-31933352 | None:intergenic |
| CACAGAAAGGATTCAGCCGC+TGG | 0.488174 | 5.1:+31934498 | MS.gene063967:CDS |
| GGCCTGAAGCAGAGAGGTCA+TGG | 0.488760 | 5.1:+31932708 | MS.gene063967:CDS |
| TCCAGAGCCCTAAATTCAAA+GGG | 0.491102 | 5.1:-31933351 | None:intergenic |
| TTATACACCGGATTTGTTCA+AGG | 0.499716 | 5.1:-31932902 | None:intergenic |
| TCCCTTCCTAATATGGAAGA+AGG | 0.500264 | 5.1:-31932861 | None:intergenic |
| AATAGTCGAAGATCTCTAGA+AGG | 0.505041 | 5.1:-31932819 | None:intergenic |
| TCAGCCGCTGGAAATGTTGC+TGG | 0.507132 | 5.1:+31934510 | MS.gene063967:CDS |
| AGTGACCGCTCTGGTGAAGT+AGG | 0.509078 | 5.1:-31934391 | None:intergenic |
| ACGGTACTGTTGGTCGGTAC+AGG | 0.509486 | 5.1:+31932961 | MS.gene063967:CDS |
| GTGACCGCTCTGGTGAAGTA+GGG | 0.510030 | 5.1:-31934390 | None:intergenic |
| ACAGGACAATATTATGCAAT+CGG | 0.514813 | 5.1:+31932979 | MS.gene063967:CDS |
| TCCTTCTTCCATATTAGGAA+GGG | 0.517517 | 5.1:+31932860 | MS.gene063967:CDS |
| ATCCTTCTTCCATATTAGGA+AGG | 0.519036 | 5.1:+31932859 | MS.gene063967:CDS |
| ACAGGTAAATGAACTGGAGA+TGG | 0.521690 | 5.1:+31934012 | MS.gene063967:intron |
| TGATGAAATAGAACATCTCA+TGG | 0.526083 | 5.1:+31934246 | MS.gene063967:CDS |
| AGGCAAGCGAATCGCAGGGC+TGG | 0.527115 | 5.1:+31932678 | MS.gene063967:CDS |
| CTTGTCAAGTGTCACAATCT+CGG | 0.527722 | 5.1:-31932769 | None:intergenic |
| AGATGTGTCTGACTGAGAAA+AGG | 0.536746 | 5.1:+31934290 | MS.gene063967:CDS |
| AAGTAAATATGGTAGTTCAA+CGG | 0.547346 | 5.1:+31934462 | MS.gene063967:CDS |
| TCTTACAGCAGCCACATTGG+TGG | 0.559109 | 5.1:+31934867 | MS.gene063967:CDS |
| AATTCACTCGACGGTACTGT+TGG | 0.559813 | 5.1:+31932951 | MS.gene063967:CDS |
| GGCCGCAATATTTGCCGCCG+TGG | 0.566381 | 5.1:+31934888 | MS.gene063967:CDS |
| AGCCCACTAAGTGACCGCTC+TGG | 0.568756 | 5.1:-31934400 | None:intergenic |
| CACCAGAGCGGTCACTTAGT+GGG | 0.569271 | 5.1:+31934398 | MS.gene063967:CDS |
| GCATCTCAAACTTTATCAGG+AGG | 0.575972 | 5.1:-31934843 | None:intergenic |
| TTCCATATTAGGAAGGGAGA+TGG | 0.579126 | 5.1:+31932866 | MS.gene063967:CDS |
| GTGGGCTTCAGATGTTGCCA+AGG | 0.580454 | 5.1:+31934416 | MS.gene063967:CDS |
| TGCCACGGCGGCAAATATTG+CGG | 0.584897 | 5.1:-31934890 | None:intergenic |
| CGAGATTGTGACACTTGACA+AGG | 0.585644 | 5.1:+31932770 | MS.gene063967:CDS |
| GCTTCTTACAGCAGCCACAT+TGG | 0.587792 | 5.1:+31934864 | MS.gene063967:CDS |
| TACTCTCAACACATTATCGT+CGG | 0.589716 | 5.1:+31934558 | MS.gene063967:CDS |
| TGAGGCCAGTTCATCTAGCA+CGG | 0.589991 | 5.1:-31934044 | None:intergenic |
| AGCAGAGAGGTCATGGAAGT+CGG | 0.592681 | 5.1:+31932715 | MS.gene063967:CDS |
| CAAAGAATACATCGACGACA+CGG | 0.599106 | 5.1:+31934673 | MS.gene063967:CDS |
| GAGGCCAGTTCATCTAGCAC+GGG | 0.606072 | 5.1:-31934043 | None:intergenic |
| CATGGATGACGATGGTGACA+TGG | 0.607118 | 5.1:+31934264 | MS.gene063967:CDS |
| ATCTTCGAACACGTTCCAGA+AGG | 0.609844 | 5.1:-31934081 | None:intergenic |
| ATTCATGAGGATGACTTCAT+CGG | 0.612801 | 5.1:-31932931 | None:intergenic |
| CATTCCAAATACTCCTGCCA+CGG | 0.614342 | 5.1:-31934905 | None:intergenic |
| TTTGAAATCACTCTACCCGA+TGG | 0.614647 | 5.1:-31934361 | None:intergenic |
| GAACTCGCTGAGTCAAAGCA+AGG | 0.614782 | 5.1:-31934117 | None:intergenic |
| TGACCGCTCTGGTGAAGTAG+GGG | 0.617312 | 5.1:-31934389 | None:intergenic |
| GTTCATCTGATAACACAGAA+AGG | 0.620976 | 5.1:+31934485 | MS.gene063967:CDS |
| TAACAGGCAAGCGAATCGCA+GGG | 0.633785 | 5.1:+31932674 | MS.gene063967:CDS |
| CACTCGACGGTACTGTTGGT+CGG | 0.637311 | 5.1:+31932955 | MS.gene063967:CDS |
| TGAGATGTTCTATTTCATCA+CGG | 0.640698 | 5.1:-31934243 | None:intergenic |
| AAGGAGAGTACTGATAGATG+AGG | 0.645637 | 5.1:-31934062 | None:intergenic |
| AAATATTGCGGCCACCAATG+TGG | 0.649069 | 5.1:-31934878 | None:intergenic |
| TACCGTCGAGTGAATTCATG+AGG | 0.649158 | 5.1:-31932944 | None:intergenic |
| TCCAAATACTCCTGCCACGG+CGG | 0.649365 | 5.1:-31934902 | None:intergenic |
| ATGTTGCCAAGGACTTTCAG+CGG | 0.651077 | 5.1:+31934427 | MS.gene063967:CDS |
| CATCGGCAGTGATTATACAC+CGG | 0.664675 | 5.1:-31932914 | None:intergenic |
| ATCCTCATGAATTCACTCGA+CGG | 0.675706 | 5.1:+31932942 | MS.gene063967:CDS |
| GCTTCCAGCAACATTTCCAG+CGG | 0.677029 | 5.1:-31934514 | None:intergenic |
| GAACATCTCATGGATGACGA+TGG | 0.697862 | 5.1:+31934256 | MS.gene063967:CDS |
| AATGCAATGGAAGAAACACA+AGG | 0.739174 | 5.1:+31932615 | None:intergenic |
| ATAAAAGGCCTGAAGCAGAG+AGG | 0.740166 | 5.1:+31932702 | MS.gene063967:CDS |
| CAGCCCCTACTTCACCAGAG+CGG | 0.766346 | 5.1:+31934386 | MS.gene063967:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAATATGTTATATTAATA+AGG | + | chr5.1:31933978-31933997 | MS.gene063967:intron | 10.0% |
| !! | AAGAAAGAGAATTATAATTA+AGG | - | chr5.1:31934171-31934190 | None:intergenic | 15.0% |
| !! | AGCATACATAATATTTATAT+CGG | + | chr5.1:31933059-31933078 | MS.gene063967:intron | 15.0% |
| !! | CATTATGTTTACATTAAAAT+TGG | + | chr5.1:31933492-31933511 | MS.gene063967:intron | 15.0% |
| !!! | AATTGTATATTTTCATGTTT+CGG | + | chr5.1:31933872-31933891 | MS.gene063967:intron | 15.0% |
| !!! | AATTTTATTAAAAAGACATC+AGG | - | chr5.1:31933813-31933832 | None:intergenic | 15.0% |
| !! | ATATGATATAAAGTGACAAA+AGG | - | chr5.1:31934750-31934769 | None:intergenic | 20.0% |
| !! | ATTGGAAATTCAAGTAAATA+TGG | + | chr5.1:31934451-31934470 | MS.gene063967:CDS | 20.0% |
| !! | ATTTGAAAACAATCATTTGA+AGG | - | chr5.1:31934334-31934353 | None:intergenic | 20.0% |
| !! | CTAAATACATAATAAGTCAT+TGG | + | chr5.1:31933916-31933935 | MS.gene063967:intron | 20.0% |
| !! | GTAACTTATATTTAGTTATC+AGG | + | chr5.1:31934219-31934238 | MS.gene063967:intron | 20.0% |
| !!! | AGATTTTCTCAACATAAAAT+TGG | + | chr5.1:31934697-31934716 | MS.gene063967:CDS | 20.0% |
| !!! | GTATCTAAAATAGAATAGTA+AGG | - | chr5.1:31935019-31935038 | None:intergenic | 20.0% |
| ! | AAATATAAGTTACTAGTTGC+AGG | - | chr5.1:31934212-31934231 | None:intergenic | 25.0% |
| ! | AAGTAAATATGGTAGTTCAA+CGG | + | chr5.1:31934462-31934481 | MS.gene063967:CDS | 25.0% |
| ! | ATTATATACTATGTAGACCA+CGG | + | chr5.1:31934776-31934795 | MS.gene063967:intron | 25.0% |
| ! | ATTGATGTCTTGTGAAAATA+TGG | - | chr5.1:31933954-31933973 | None:intergenic | 25.0% |
| ! | ATTTATCCTTCTTCCATATT+AGG | + | chr5.1:31932855-31932874 | MS.gene063967:CDS | 25.0% |
| ! | GAAATCAGTAAGCAATTATA+TGG | - | chr5.1:31933310-31933329 | None:intergenic | 25.0% |
| ! | GAAGAAGGATAAATGAATTT+CGG | - | chr5.1:31932849-31932868 | None:intergenic | 25.0% |
| ! | TGAAAAATTTACAAGATTGC+AGG | - | chr5.1:31933651-31933670 | None:intergenic | 25.0% |
| ! | TTCACTTTGATGAAAATAGA+AGG | + | chr5.1:31933667-31933686 | MS.gene063967:intron | 25.0% |
| !! | CATTTTCATTAAACATCCTA+TGG | + | chr5.1:31933572-31933591 | MS.gene063967:intron | 25.0% |
| !! | TGATATCAGTGTTTGAATTT+TGG | + | chr5.1:31933848-31933867 | MS.gene063967:intron | 25.0% |
| !! | TTTTCAATCTATCTGTTACA+GGG | + | chr5.1:31934808-31934827 | MS.gene063967:intron | 25.0% |
| !!! | TACATGAGTATGATTTTAAC+AGG | + | chr5.1:31932658-31932677 | MS.gene063967:CDS | 25.0% |
| AAAACAGTGTTTAGGCTTAA+CGG | + | chr5.1:31933621-31933640 | MS.gene063967:intron | 30.0% | |
| ACAGATTCAATGCAAAAATG+TGG | - | chr5.1:31933456-31933475 | None:intergenic | 30.0% | |
| ACAGGACAATATTATGCAAT+CGG | + | chr5.1:31932979-31932998 | MS.gene063967:CDS | 30.0% | |
| AGGGAGAGAATATAATGTTT+AGG | + | chr5.1:31933734-31933753 | MS.gene063967:intron | 30.0% | |
| AGTAAATATGGTAGTTCAAC+GGG | + | chr5.1:31934463-31934482 | MS.gene063967:CDS | 30.0% | |
| ATGATCTTCCCTTTGAATTT+AGG | + | chr5.1:31933343-31933362 | MS.gene063967:CDS | 30.0% | |
| ATTGAAAAGTTTATAGTCCG+TGG | - | chr5.1:31934796-31934815 | None:intergenic | 30.0% | |
| GGATAAAAATTGATCAGGAT+GGG | + | chr5.1:31932742-31932761 | MS.gene063967:CDS | 30.0% | |
| GTCTTGGATAAAAATTGATC+AGG | + | chr5.1:31932737-31932756 | MS.gene063967:CDS | 30.0% | |
| TCAAACACTGATATCAAGTT+TGG | - | chr5.1:31933844-31933863 | None:intergenic | 30.0% | |
| TCAATGAAGATAAGCAATGT+CGG | - | chr5.1:31934628-31934647 | None:intergenic | 30.0% | |
| TGAGATGTTCTATTTCATCA+CGG | - | chr5.1:31934246-31934265 | None:intergenic | 30.0% | |
| TGATCTTCCCTTTGAATTTA+GGG | + | chr5.1:31933344-31933363 | MS.gene063967:CDS | 30.0% | |
| TGATGAAATAGAACATCTCA+TGG | + | chr5.1:31934246-31934265 | MS.gene063967:CDS | 30.0% | |
| TGGATAAAAATTGATCAGGA+TGG | + | chr5.1:31932741-31932760 | MS.gene063967:CDS | 30.0% | |
| ! | AATAAGGATCTTGATTTGAC+AGG | + | chr5.1:31933994-31934013 | MS.gene063967:intron | 30.0% |
| ! | ATAGTAGTGGAAGAATTATG+AGG | + | chr5.1:31933102-31933121 | MS.gene063967:intron | 30.0% |
| ! | CTTTTCAATCTATCTGTTAC+AGG | + | chr5.1:31934807-31934826 | MS.gene063967:intron | 30.0% |
| ! | TAGTAGTGGAAGAATTATGA+GGG | + | chr5.1:31933103-31933122 | MS.gene063967:intron | 30.0% |
| ! | TGAAATAGGATGTCTTTTGT+TGG | + | chr5.1:31933143-31933162 | MS.gene063967:intron | 30.0% |
| ! | TTCATTGATAATACTCTTGC+TGG | + | chr5.1:31934640-31934659 | MS.gene063967:intron | 30.0% |
| ! | TTTTCAAATTCGTTCACCAT+CGG | + | chr5.1:31934345-31934364 | MS.gene063967:CDS | 30.0% |
| !! | TGACCAGAAACTTTACTTTT+TGG | + | chr5.1:31933422-31933441 | MS.gene063967:intron | 30.0% |
| !! | TTCTAGTTTACAGCAAAAAG+AGG | - | chr5.1:31933036-31933055 | None:intergenic | 30.0% |
| !! | TTCTGGATTCAATTTGGTTT+TGG | + | chr5.1:31934957-31934976 | MS.gene063967:CDS | 30.0% |
| !!! | AATTTGGTTTTGGTAGTTAC+TGG | + | chr5.1:31934967-31934986 | MS.gene063967:CDS | 30.0% |
| !!! | ACCAGAAACTTTACTTTTTG+GGG | + | chr5.1:31933424-31933443 | MS.gene063967:intron | 30.0% |
| !!! | GACCAGAAACTTTACTTTTT+GGG | + | chr5.1:31933423-31933442 | MS.gene063967:intron | 30.0% |
| AATAGTCGAAGATCTCTAGA+AGG | - | chr5.1:31932822-31932841 | None:intergenic | 35.0% | |
| AGAAGAGTAGTCAAAAACTG+AGG | - | chr5.1:31934941-31934960 | None:intergenic | 35.0% | |
| ATCCTTCTTCCATATTAGGA+AGG | + | chr5.1:31932859-31932878 | MS.gene063967:CDS | 35.0% | |
| ATGCACATCTTTAGATTCTC+AGG | + | chr5.1:31933392-31933411 | MS.gene063967:CDS | 35.0% | |
| ATTCATGAGGATGACTTCAT+CGG | - | chr5.1:31932934-31932953 | None:intergenic | 35.0% | |
| CAACTCACAAAACAGTGTTT+AGG | + | chr5.1:31933613-31933632 | MS.gene063967:intron | 35.0% | |
| CAGAGAGAAAAATCTGGTAA+GGG | + | chr5.1:31933005-31933024 | MS.gene063967:intron | 35.0% | |
| CTACTCTTCTGGATTCAATT+TGG | + | chr5.1:31934951-31934970 | MS.gene063967:CDS | 35.0% | |
| GAACGTGTTCGAAGATTTAA+AGG | + | chr5.1:31934088-31934107 | MS.gene063967:CDS | 35.0% | |
| GATTCAATGCAAAAATGTGG+AGG | - | chr5.1:31933453-31933472 | None:intergenic | 35.0% | |
| GATTTGACAGGTAAATGAAC+TGG | + | chr5.1:31934006-31934025 | MS.gene063967:intron | 35.0% | |
| GCACTATTAGGAAATAGTAG+TGG | + | chr5.1:31933089-31933108 | MS.gene063967:intron | 35.0% | |
| GTTCATCTGATAACACAGAA+AGG | + | chr5.1:31934485-31934504 | MS.gene063967:CDS | 35.0% | |
| TACTCTCAACACATTATCGT+CGG | + | chr5.1:31934558-31934577 | MS.gene063967:CDS | 35.0% | |
| TCCCCAAAAAGTAAAGTTTC+TGG | - | chr5.1:31933428-31933447 | None:intergenic | 35.0% | |
| TCCTTCTTCCATATTAGGAA+GGG | + | chr5.1:31932860-31932879 | MS.gene063967:CDS | 35.0% | |
| TGAAATTGCAGGAAAACCAT+AGG | - | chr5.1:31933591-31933610 | None:intergenic | 35.0% | |
| TGTAGCACTCAAGATATGTA+GGG | + | chr5.1:31933715-31933734 | MS.gene063967:intron | 35.0% | |
| TTGTAGCACTCAAGATATGT+AGG | + | chr5.1:31933714-31933733 | MS.gene063967:intron | 35.0% | |
| TTGTCAACCTTGAACAAATC+CGG | + | chr5.1:31932895-31932914 | MS.gene063967:CDS | 35.0% | |
| TTTCAAATTCGTTCACCATC+GGG | + | chr5.1:31934346-31934365 | MS.gene063967:CDS | 35.0% | |
| ! | GAAGCATCTCAAACTTTATC+AGG | - | chr5.1:31934849-31934868 | None:intergenic | 35.0% |
| ! | TTATACACCGGATTTGTTCA+AGG | - | chr5.1:31932905-31932924 | None:intergenic | 35.0% |
| ! | TTCTAGAGATCTTCGACTAT+TGG | + | chr5.1:31932821-31932840 | MS.gene063967:CDS | 35.0% |
| !! | GTTTTGGTAGTTACTGGAAT+TGG | + | chr5.1:31934973-31934992 | MS.gene063967:CDS | 35.0% |
| !! | TCAGTTTTTGACTACTCTTC+TGG | + | chr5.1:31934940-31934959 | MS.gene063967:CDS | 35.0% |
| ACAGGTAAATGAACTGGAGA+TGG | + | chr5.1:31934012-31934031 | MS.gene063967:intron | 40.0% | |
| AGAAGGCTGCTAAAATCTCT+AGG | + | chr5.1:31933684-31933703 | MS.gene063967:intron | 40.0% | |
| AGATGTGTCTGACTGAGAAA+AGG | + | chr5.1:31934290-31934309 | MS.gene063967:CDS | 40.0% | |
| ATCCTCATGAATTCACTCGA+CGG | + | chr5.1:31932942-31932961 | MS.gene063967:CDS | 40.0% | |
| ATCGGAGTTGTAGCACTATT+AGG | + | chr5.1:31933077-31933096 | MS.gene063967:intron | 40.0% | |
| ATCTATCAGTACTCTCCTTC+TGG | + | chr5.1:31934066-31934085 | MS.gene063967:CDS | 40.0% | |
| CAAAGAATACATCGACGACA+CGG | + | chr5.1:31934673-31934692 | MS.gene063967:CDS | 40.0% | |
| CCAGAGAGAAAAATCTGGTA+AGG | + | chr5.1:31933004-31933023 | MS.gene063967:intron | 40.0% | |
| CTTGTCAAGTGTCACAATCT+CGG | - | chr5.1:31932772-31932791 | None:intergenic | 40.0% | |
| GCATCTCAAACTTTATCAGG+AGG | - | chr5.1:31934846-31934865 | None:intergenic | 40.0% | |
| GTGGAAGAATTATGAGGGTA+CGG | + | chr5.1:31933108-31933127 | MS.gene063967:intron | 40.0% | |
| TCCAGAGCCCTAAATTCAAA+GGG | - | chr5.1:31933354-31933373 | None:intergenic | 40.0% | |
| TCCCTTCCTAATATGGAAGA+AGG | - | chr5.1:31932864-31932883 | None:intergenic | 40.0% | |
| TTCCATATTAGGAAGGGAGA+TGG | + | chr5.1:31932866-31932885 | MS.gene063967:CDS | 40.0% | |
| TTTGACTCAGCGAGTTCAAA+AGG | + | chr5.1:31934123-31934142 | MS.gene063967:CDS | 40.0% | |
| ! | CCTTACCAGATTTTTCTCTC+TGG | - | chr5.1:31933007-31933026 | None:intergenic | 40.0% |
| ! | GTTCAAAAGGTTGATCAACG+TGG | + | chr5.1:31934136-31934155 | MS.gene063967:intron | 40.0% |
| ! | TGTGAGTTGTCTGAAATTGC+AGG | - | chr5.1:31933602-31933621 | None:intergenic | 40.0% |
| ! | TTTGAAATCACTCTACCCGA+TGG | - | chr5.1:31934364-31934383 | None:intergenic | 40.0% |
| !! | AAGGAGAGTACTGATAGATG+AGG | - | chr5.1:31934065-31934084 | None:intergenic | 40.0% |
| AAATATTGCGGCCACCAATG+TGG | - | chr5.1:31934881-31934900 | None:intergenic | 45.0% | |
| AATTCACTCGACGGTACTGT+TGG | + | chr5.1:31932951-31932970 | MS.gene063967:CDS | 45.0% | |
| AGCCATCTCCCTTCCTAATA+TGG | - | chr5.1:31932871-31932890 | None:intergenic | 45.0% | |
| ATAAAAGGCCTGAAGCAGAG+AGG | + | chr5.1:31932702-31932721 | MS.gene063967:CDS | 45.0% | |
| ATATCCCGTGCTAGATGAAC+TGG | + | chr5.1:31934039-31934058 | MS.gene063967:CDS | 45.0% | |
| ATCTTCGAACACGTTCCAGA+AGG | - | chr5.1:31934084-31934103 | None:intergenic | 45.0% | |
| ATGTTGCCAAGGACTTTCAG+CGG | + | chr5.1:31934427-31934446 | MS.gene063967:CDS | 45.0% | |
| CATCGGCAGTGATTATACAC+CGG | - | chr5.1:31932917-31932936 | None:intergenic | 45.0% | |
| CATTCCAAATACTCCTGCCA+CGG | - | chr5.1:31934908-31934927 | None:intergenic | 45.0% | |
| CGAGATTGTGACACTTGACA+AGG | + | chr5.1:31932770-31932789 | MS.gene063967:CDS | 45.0% | |
| CTCCAGAGCCCTAAATTCAA+AGG | - | chr5.1:31933355-31933374 | None:intergenic | 45.0% | |
| GAACATCTCATGGATGACGA+TGG | + | chr5.1:31934256-31934275 | MS.gene063967:CDS | 45.0% | |
| TACCGTCGAGTGAATTCATG+AGG | - | chr5.1:31932947-31932966 | None:intergenic | 45.0% | |
| ! | AATCGCAGGGCTGGTATAAA+AGG | + | chr5.1:31932687-31932706 | MS.gene063967:CDS | 45.0% |
| ! | GGCATTGAGTGGTGTGAAAT+AGG | + | chr5.1:31933129-31933148 | MS.gene063967:intron | 45.0% |
| ! | TCCCTTTGAATTTAGGGCTC+TGG | + | chr5.1:31933350-31933369 | MS.gene063967:CDS | 45.0% |
| AGCAGAGAGGTCATGGAAGT+CGG | + | chr5.1:31932715-31932734 | MS.gene063967:CDS | 50.0% | |
| CATGGATGACGATGGTGACA+TGG | + | chr5.1:31934264-31934283 | MS.gene063967:CDS | 50.0% | |
| CGGCTCCAGAGAGAAAAATC+TGG | + | chr5.1:31932999-31933018 | MS.gene063967:CDS | 50.0% | |
| GAACTCGCTGAGTCAAAGCA+AGG | - | chr5.1:31934120-31934139 | None:intergenic | 50.0% | |
| GCTTCCAGCAACATTTCCAG+CGG | - | chr5.1:31934517-31934536 | None:intergenic | 50.0% | |
| GCTTCTTACAGCAGCCACAT+TGG | + | chr5.1:31934864-31934883 | MS.gene063967:CDS | 50.0% | |
| TAACAGGCAAGCGAATCGCA+GGG | + | chr5.1:31932674-31932693 | MS.gene063967:CDS | 50.0% | |
| TCTTACAGCAGCCACATTGG+TGG | + | chr5.1:31934867-31934886 | MS.gene063967:CDS | 50.0% | |
| TGAGGCCAGTTCATCTAGCA+CGG | - | chr5.1:31934047-31934066 | None:intergenic | 50.0% | |
| TTAACAGGCAAGCGAATCGC+AGG | + | chr5.1:31932673-31932692 | MS.gene063967:CDS | 50.0% | |
| TTCCATGACCTCTCTGCTTC+AGG | - | chr5.1:31932713-31932732 | None:intergenic | 50.0% | |
| ! | TATGAGGGTACGGCATTGAG+TGG | + | chr5.1:31933118-31933137 | MS.gene063967:intron | 50.0% |
| ACGGTACTGTTGGTCGGTAC+AGG | + | chr5.1:31932961-31932980 | MS.gene063967:CDS | 55.0% | |
| AGTGACCGCTCTGGTGAAGT+AGG | - | chr5.1:31934394-31934413 | None:intergenic | 55.0% | |
| CACAGAAAGGATTCAGCCGC+TGG | + | chr5.1:31934498-31934517 | MS.gene063967:CDS | 55.0% | |
| CACCAGAGCGGTCACTTAGT+GGG | + | chr5.1:31934398-31934417 | MS.gene063967:CDS | 55.0% | |
| CACTCGACGGTACTGTTGGT+CGG | + | chr5.1:31932955-31932974 | MS.gene063967:CDS | 55.0% | |
| CCAAGGACTTTCAGCGGCAT+TGG | + | chr5.1:31934433-31934452 | MS.gene063967:CDS | 55.0% | |
| CCAATGCCGCTGAAAGTCCT+TGG | - | chr5.1:31934436-31934455 | None:intergenic | 55.0% | |
| GAGGCCAGTTCATCTAGCAC+GGG | - | chr5.1:31934046-31934065 | None:intergenic | 55.0% | |
| GAGGTCATGGAAGTCGGTCT+TGG | + | chr5.1:31932721-31932740 | MS.gene063967:CDS | 55.0% | |
| GTGACCGCTCTGGTGAAGTA+GGG | - | chr5.1:31934393-31934412 | None:intergenic | 55.0% | |
| GTGGGCTTCAGATGTTGCCA+AGG | + | chr5.1:31934416-31934435 | MS.gene063967:CDS | 55.0% | |
| TCACCAGAGCGGTCACTTAG+TGG | + | chr5.1:31934397-31934416 | MS.gene063967:CDS | 55.0% | |
| TCAGCCGCTGGAAATGTTGC+TGG | + | chr5.1:31934510-31934529 | MS.gene063967:CDS | 55.0% | |
| TCCAAATACTCCTGCCACGG+CGG | - | chr5.1:31934905-31934924 | None:intergenic | 55.0% | |
| TGACCGCTCTGGTGAAGTAG+GGG | - | chr5.1:31934392-31934411 | None:intergenic | 55.0% | |
| TGCCACGGCGGCAAATATTG+CGG | - | chr5.1:31934893-31934912 | None:intergenic | 55.0% | |
| !! | TAGGGCTCTGGAGTTAGCTC+TGG | + | chr5.1:31933362-31933381 | MS.gene063967:CDS | 55.0% |
| AGCCCACTAAGTGACCGCTC+TGG | - | chr5.1:31934403-31934422 | None:intergenic | 60.0% | |
| CAGCCCCTACTTCACCAGAG+CGG | + | chr5.1:31934386-31934405 | MS.gene063967:CDS | 60.0% | |
| GCAATATTTGCCGCCGTGGC+AGG | + | chr5.1:31934892-31934911 | MS.gene063967:CDS | 60.0% | |
| GGCCTGAAGCAGAGAGGTCA+TGG | + | chr5.1:31932708-31932727 | MS.gene063967:CDS | 60.0% | |
| AGGCAAGCGAATCGCAGGGC+TGG | + | chr5.1:31932678-31932697 | MS.gene063967:CDS | 65.0% | |
| GGCCGCAATATTTGCCGCCG+TGG | + | chr5.1:31934888-31934907 | MS.gene063967:CDS | 65.0% | |
| !! | GCCGCCGTGGCAGGAGTATT+TGG | + | chr5.1:31934901-31934920 | MS.gene063967:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 31932621 | 31935059 | 31932621 | ID=MS.gene063967 |
| chr5.1 | mRNA | 31932621 | 31935059 | 31932621 | ID=MS.gene063967.t1;Parent=MS.gene063967 |
| chr5.1 | exon | 31932621 | 31933020 | 31932621 | ID=MS.gene063967.t1.exon1;Parent=MS.gene063967.t1 |
| chr5.1 | CDS | 31932621 | 31933020 | 31932621 | ID=cds.MS.gene063967.t1;Parent=MS.gene063967.t1 |
| chr5.1 | exon | 31933343 | 31933413 | 31933343 | ID=MS.gene063967.t1.exon2;Parent=MS.gene063967.t1 |
| chr5.1 | CDS | 31933343 | 31933413 | 31933343 | ID=cds.MS.gene063967.t1;Parent=MS.gene063967.t1 |
| chr5.1 | exon | 31934016 | 31934144 | 31934016 | ID=MS.gene063967.t1.exon3;Parent=MS.gene063967.t1 |
| chr5.1 | CDS | 31934016 | 31934144 | 31934016 | ID=cds.MS.gene063967.t1;Parent=MS.gene063967.t1 |
| chr5.1 | exon | 31934241 | 31934579 | 31934241 | ID=MS.gene063967.t1.exon4;Parent=MS.gene063967.t1 |
| chr5.1 | CDS | 31934241 | 31934579 | 31934241 | ID=cds.MS.gene063967.t1;Parent=MS.gene063967.t1 |
| chr5.1 | exon | 31934671 | 31934718 | 31934671 | ID=MS.gene063967.t1.exon5;Parent=MS.gene063967.t1 |
| chr5.1 | CDS | 31934671 | 31934718 | 31934671 | ID=cds.MS.gene063967.t1;Parent=MS.gene063967.t1 |
| chr5.1 | exon | 31934829 | 31935059 | 31934829 | ID=MS.gene063967.t1.exon6;Parent=MS.gene063967.t1 |
| chr5.1 | CDS | 31934829 | 31935059 | 31934829 | ID=cds.MS.gene063967.t1;Parent=MS.gene063967.t1 |
| Gene Sequence |
| Protein sequence |
