Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063969.t1 | XP_003614161.1 | 99.3 | 405 | 3 | 0 | 1 | 405 | 1 | 405 | 4.90E-220 | 773.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063969.t1 | Q9ZPR4 | 64.6 | 396 | 130 | 4 | 17 | 404 | 27 | 420 | 2.5e-127 | 456.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063969.t1 | G7JZ40 | 99.3 | 405 | 3 | 0 | 1 | 405 | 1 | 405 | 3.6e-220 | 773.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene063969 | MS.gene071246 | PPI |
MS.gene063969 | MS.gene067486 | PPI |
MS.gene063969 | MS.gene83528 | PPI |
MS.gene92350 | MS.gene063969 | PPI |
MS.gene063969 | MS.gene024949 | PPI |
MS.gene90371 | MS.gene063969 | PPI |
MS.gene063969 | MS.gene90372 | PPI |
MS.gene063969 | MS.gene046935 | PPI |
MS.gene40181 | MS.gene063969 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063969.t1 | MTR_5g045590 | 99.259 | 405 | 3 | 0 | 1 | 405 | 1 | 405 | 0.0 | 825 |
MS.gene063969.t1 | MTR_2g105270 | 52.941 | 425 | 152 | 5 | 20 | 404 | 31 | 447 | 5.77e-143 | 414 |
MS.gene063969.t1 | MTR_2g105270 | 53.714 | 350 | 114 | 5 | 20 | 329 | 31 | 372 | 2.58e-108 | 325 |
MS.gene063969.t1 | MTR_2g105270 | 51.940 | 335 | 113 | 5 | 20 | 314 | 31 | 357 | 1.25e-97 | 296 |
MS.gene063969.t1 | MTR_5g005240 | 40.092 | 434 | 207 | 8 | 19 | 403 | 14 | 443 | 4.95e-96 | 295 |
MS.gene063969.t1 | MTR_8g088670 | 39.900 | 401 | 182 | 9 | 32 | 403 | 50 | 420 | 2.64e-83 | 261 |
MS.gene063969.t1 | MTR_1g040495 | 39.370 | 381 | 181 | 7 | 40 | 400 | 15 | 365 | 1.60e-79 | 249 |
MS.gene063969.t1 | MTR_8g094880 | 36.952 | 433 | 198 | 10 | 22 | 405 | 18 | 424 | 7.93e-75 | 239 |
MS.gene063969.t1 | MTR_8g094905 | 36.952 | 433 | 198 | 10 | 22 | 405 | 18 | 424 | 7.93e-75 | 239 |
MS.gene063969.t1 | MTR_1g076210 | 40.806 | 397 | 187 | 6 | 31 | 403 | 16 | 388 | 9.93e-75 | 238 |
MS.gene063969.t1 | MTR_1g093280 | 40.806 | 397 | 187 | 6 | 31 | 403 | 16 | 388 | 9.93e-75 | 238 |
MS.gene063969.t1 | MTR_1g106065 | 34.988 | 423 | 227 | 8 | 22 | 403 | 3 | 418 | 1.27e-74 | 238 |
MS.gene063969.t1 | MTR_7g096170 | 38.619 | 391 | 194 | 6 | 32 | 400 | 17 | 383 | 8.48e-71 | 228 |
MS.gene063969.t1 | MTR_7g096170 | 40.395 | 354 | 166 | 5 | 32 | 364 | 17 | 346 | 8.88e-66 | 214 |
MS.gene063969.t1 | MTR_8g088670 | 40.323 | 310 | 130 | 7 | 32 | 314 | 50 | 331 | 8.92e-60 | 198 |
MS.gene063969.t1 | MTR_8g088670 | 39.490 | 314 | 135 | 7 | 32 | 318 | 50 | 335 | 9.74e-60 | 197 |
MS.gene063969.t1 | MTR_7g096170 | 40.252 | 318 | 145 | 5 | 32 | 328 | 17 | 310 | 6.73e-54 | 181 |
MS.gene063969.t1 | MTR_7g096170 | 39.850 | 266 | 135 | 4 | 136 | 400 | 45 | 286 | 8.65e-45 | 157 |
MS.gene063969.t1 | MTR_1g040475 | 40.796 | 201 | 103 | 3 | 27 | 211 | 4 | 204 | 1.20e-33 | 125 |
MS.gene063969.t1 | MTR_1g076220 | 34.052 | 232 | 91 | 5 | 176 | 403 | 54 | 227 | 3.94e-30 | 116 |
MS.gene063969.t1 | MTR_1g093370 | 42.105 | 133 | 69 | 3 | 275 | 403 | 37 | 165 | 4.69e-24 | 98.2 |
MS.gene063969.t1 | MTR_2g059110 | 46.753 | 77 | 41 | 0 | 31 | 107 | 8 | 84 | 3.98e-17 | 76.6 |
MS.gene063969.t1 | MTR_2g059120 | 53.968 | 63 | 29 | 0 | 45 | 107 | 20 | 82 | 2.25e-14 | 68.9 |
MS.gene063969.t1 | MTR_2g100150 | 36.667 | 150 | 77 | 5 | 36 | 181 | 12 | 147 | 4.20e-14 | 70.1 |
MS.gene063969.t1 | MTR_1g040455 | 36.264 | 91 | 57 | 1 | 314 | 403 | 7 | 97 | 9.86e-14 | 67.0 |
MS.gene063969.t1 | MTR_1g055050 | 42.991 | 107 | 58 | 2 | 121 | 225 | 33 | 138 | 2.90e-13 | 69.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063969.t1 | AT2G03620 | 64.394 | 396 | 131 | 4 | 17 | 404 | 27 | 420 | 1.05e-164 | 469 |
MS.gene063969.t1 | AT2G03620 | 64.394 | 396 | 131 | 4 | 17 | 404 | 27 | 420 | 1.05e-164 | 469 |
MS.gene063969.t1 | AT1G16010 | 55.802 | 405 | 148 | 4 | 28 | 404 | 40 | 441 | 7.21e-148 | 427 |
MS.gene063969.t1 | AT1G16010 | 55.802 | 405 | 148 | 4 | 28 | 404 | 40 | 441 | 7.21e-148 | 427 |
MS.gene063969.t1 | AT1G16010 | 55.802 | 405 | 148 | 4 | 28 | 404 | 40 | 441 | 7.21e-148 | 427 |
MS.gene063969.t1 | AT1G80900 | 52.955 | 423 | 149 | 4 | 20 | 404 | 32 | 442 | 8.98e-148 | 427 |
MS.gene063969.t1 | AT1G80900 | 52.955 | 423 | 149 | 4 | 20 | 404 | 32 | 442 | 8.98e-148 | 427 |
MS.gene063969.t1 | AT3G19640 | 41.096 | 438 | 184 | 11 | 40 | 403 | 46 | 483 | 2.46e-89 | 278 |
MS.gene063969.t1 | AT5G09690 | 40.657 | 396 | 192 | 4 | 26 | 403 | 25 | 395 | 2.63e-89 | 276 |
MS.gene063969.t1 | AT5G09690 | 40.657 | 396 | 192 | 4 | 26 | 403 | 14 | 384 | 2.88e-89 | 275 |
MS.gene063969.t1 | AT5G09690 | 41.144 | 367 | 173 | 4 | 26 | 375 | 25 | 365 | 1.90e-83 | 260 |
MS.gene063969.t1 | AT3G58970 | 37.750 | 400 | 200 | 7 | 32 | 403 | 56 | 434 | 3.90e-78 | 248 |
MS.gene063969.t1 | AT5G09690 | 42.424 | 330 | 148 | 3 | 26 | 338 | 14 | 318 | 1.44e-72 | 230 |
MS.gene063969.t1 | AT5G09690 | 42.424 | 330 | 148 | 3 | 26 | 338 | 25 | 329 | 1.78e-72 | 230 |
MS.gene063969.t1 | AT5G09690 | 42.424 | 330 | 148 | 3 | 26 | 338 | 25 | 329 | 1.78e-72 | 230 |
MS.gene063969.t1 | AT5G09690 | 42.424 | 330 | 148 | 3 | 26 | 338 | 14 | 318 | 2.48e-72 | 229 |
MS.gene063969.t1 | AT5G09690 | 42.424 | 330 | 148 | 3 | 26 | 338 | 25 | 329 | 2.86e-72 | 230 |
MS.gene063969.t1 | AT5G09690 | 42.424 | 330 | 148 | 3 | 26 | 338 | 14 | 318 | 2.96e-72 | 229 |
MS.gene063969.t1 | AT5G64560 | 39.440 | 393 | 183 | 6 | 40 | 403 | 26 | 392 | 9.01e-68 | 220 |
MS.gene063969.t1 | AT5G09690 | 36.111 | 396 | 195 | 6 | 26 | 403 | 14 | 369 | 1.97e-67 | 218 |
MS.gene063969.t1 | AT5G64560 | 40.111 | 359 | 161 | 5 | 40 | 370 | 26 | 358 | 1.73e-61 | 203 |
MS.gene063969.t1 | AT5G09690 | 46.047 | 215 | 95 | 2 | 26 | 223 | 14 | 224 | 3.32e-53 | 179 |
MS.gene063969.t1 | AT5G09690 | 46.047 | 215 | 95 | 2 | 26 | 223 | 25 | 235 | 5.12e-53 | 179 |
MS.gene063969.t1 | AT5G09690 | 46.047 | 215 | 95 | 2 | 26 | 223 | 25 | 235 | 5.12e-53 | 179 |
MS.gene063969.t1 | AT5G09690 | 46.047 | 215 | 95 | 2 | 26 | 223 | 25 | 235 | 5.12e-53 | 179 |
MS.gene063969.t1 | AT4G28580 | 31.579 | 399 | 214 | 6 | 29 | 403 | 44 | 407 | 2.83e-51 | 177 |
MS.gene063969.t1 | AT5G09720 | 39.427 | 279 | 138 | 8 | 36 | 301 | 16 | 276 | 7.70e-47 | 162 |
MS.gene063969.t1 | AT5G09720 | 39.427 | 279 | 138 | 8 | 36 | 301 | 16 | 276 | 7.70e-47 | 162 |
Find 91 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGATCTTCCCTTTGAATTT+AGG | 0.088653 | 5.2:+36212243 | MS.gene063969:CDS |
TGATCTTCCCTTTGAATTTA+GGG | 0.214507 | 5.2:+36212244 | MS.gene063969:CDS |
GCCGCCGTGGCAGGAGTATT+TGG | 0.234108 | 5.2:+36213803 | MS.gene063969:CDS |
TTCTGGATTCAATTTGGTTT+TGG | 0.248178 | 5.2:+36213859 | MS.gene063969:CDS |
CTACTCTTCTGGATTCAATT+TGG | 0.249380 | 5.2:+36213853 | MS.gene063969:CDS |
ATTTATCCTTCTTCCATATT+AGG | 0.249449 | 5.2:+36211754 | MS.gene063969:CDS |
AGCCATCTCCCTTCCTAATA+TGG | 0.295338 | 5.2:-36211767 | None:intergenic |
TTCTAGAGATCTTCGACTAT+TGG | 0.307849 | 5.2:+36211720 | MS.gene063969:CDS |
TCCCTTTGAATTTAGGGCTC+TGG | 0.324784 | 5.2:+36212250 | MS.gene063969:CDS |
GAACGTGTTCGAAGATTTAA+AGG | 0.326254 | 5.2:+36212990 | MS.gene063969:CDS |
TTCCATGACCTCTCTGCTTC+AGG | 0.330823 | 5.2:-36211609 | None:intergenic |
AATCGCAGGGCTGGTATAAA+AGG | 0.334220 | 5.2:+36211586 | MS.gene063969:CDS |
GAAGCATCTCAAACTTTATC+AGG | 0.362455 | 5.2:-36213748 | None:intergenic |
ATTGGAAATTCAAGTAAATA+TGG | 0.367253 | 5.2:+36213353 | MS.gene063969:CDS |
GAAGAAGGATAAATGAATTT+CGG | 0.372060 | 5.2:-36211745 | None:intergenic |
ATCTATCAGTACTCTCCTTC+TGG | 0.372524 | 5.2:+36212968 | MS.gene063969:CDS |
AGTAAATATGGTAGTTCAAC+GGG | 0.377045 | 5.2:+36213365 | MS.gene063969:CDS |
CCAAGGACTTTCAGCGGCAT+TGG | 0.377986 | 5.2:+36213335 | MS.gene063969:CDS |
GCAATATTTGCCGCCGTGGC+AGG | 0.398522 | 5.2:+36213794 | MS.gene063969:CDS |
ATGCACATCTTTAGATTCTC+AGG | 0.428704 | 5.2:+36212292 | MS.gene063969:CDS |
ATATCCCGTGCTAGATGAAC+TGG | 0.441183 | 5.2:+36212941 | MS.gene063969:CDS |
ATTTGAAAACAATCATTTGA+AGG | 0.441921 | 5.2:-36213233 | None:intergenic |
GAGGTCATGGAAGTCGGTCT+TGG | 0.450393 | 5.2:+36211620 | MS.gene063969:CDS |
TTGTCAACCTTGAACAAATC+CGG | 0.460150 | 5.2:+36211794 | MS.gene063969:CDS |
GATTTGACAGGTAAATGAAC+TGG | 0.464980 | 5.2:+36212908 | MS.gene063969:intron |
CCAATGCCGCTGAAAGTCCT+TGG | 0.466774 | 5.2:-36213335 | None:intergenic |
TAGGGCTCTGGAGTTAGCTC+TGG | 0.466890 | 5.2:+36212262 | MS.gene063969:CDS |
TTTCAAATTCGTTCACCATC+GGG | 0.472477 | 5.2:+36213248 | MS.gene063969:CDS |
GTATCTAAAATAGAATAGTA+AGG | 0.476408 | 5.2:-36213918 | None:intergenic |
TTTGACTCAGCGAGTTCAAA+AGG | 0.483080 | 5.2:+36213025 | MS.gene063969:CDS |
TTAACAGGCAAGCGAATCGC+AGG | 0.485254 | 5.2:+36211572 | MS.gene063969:CDS |
TCACCAGAGCGGTCACTTAG+TGG | 0.486329 | 5.2:+36213299 | MS.gene063969:CDS |
CTCCAGAGCCCTAAATTCAA+AGG | 0.486570 | 5.2:-36212252 | None:intergenic |
CACAGAAAGGATTCAGCCGC+TGG | 0.488174 | 5.2:+36213400 | MS.gene063969:CDS |
GGCCTGAAGCAGAGAGGTCA+TGG | 0.488760 | 5.2:+36211607 | MS.gene063969:CDS |
TCCAGAGCCCTAAATTCAAA+GGG | 0.491102 | 5.2:-36212251 | None:intergenic |
TTATACACCGGATTTGTTCA+AGG | 0.499716 | 5.2:-36211801 | None:intergenic |
TCCCTTCCTAATATGGAAGA+AGG | 0.500264 | 5.2:-36211760 | None:intergenic |
AATAGTCGAAGATCTCTAGA+AGG | 0.505041 | 5.2:-36211718 | None:intergenic |
TCAGCCGCTGGAAATGTTGC+TGG | 0.507132 | 5.2:+36213412 | MS.gene063969:CDS |
AGTGACCGCTCTGGTGAAGT+AGG | 0.509078 | 5.2:-36213293 | None:intergenic |
ACGGTACTGTTGGTCGGTAC+AGG | 0.509486 | 5.2:+36211860 | MS.gene063969:CDS |
GTGACCGCTCTGGTGAAGTA+GGG | 0.510030 | 5.2:-36213292 | None:intergenic |
ACAGGACAATATTATGCAAT+CGG | 0.514813 | 5.2:+36211878 | MS.gene063969:CDS |
TCCTTCTTCCATATTAGGAA+GGG | 0.517517 | 5.2:+36211759 | MS.gene063969:CDS |
ATCCTTCTTCCATATTAGGA+AGG | 0.519036 | 5.2:+36211758 | MS.gene063969:CDS |
ACAGGTAAATGAACTGGAGA+TGG | 0.521690 | 5.2:+36212914 | MS.gene063969:intron |
TGATGAAATAGAACATCTCA+TGG | 0.526083 | 5.2:+36213148 | MS.gene063969:CDS |
AGGCAAGCGAATCGCAGGGC+TGG | 0.527115 | 5.2:+36211577 | MS.gene063969:CDS |
CTTGTCAAGTGTCACAATCT+CGG | 0.527722 | 5.2:-36211668 | None:intergenic |
AGATGTGTCTGACTGAGAAA+AGG | 0.536746 | 5.2:+36213192 | MS.gene063969:CDS |
AAGTAAATATGGTAGTTCAA+CGG | 0.547346 | 5.2:+36213364 | MS.gene063969:CDS |
TCTTACAGCAGCCACATTGG+TGG | 0.559109 | 5.2:+36213769 | MS.gene063969:CDS |
AATTCACTCGACGGTACTGT+TGG | 0.559813 | 5.2:+36211850 | MS.gene063969:CDS |
GGCCGCAATATTTGCCGCCG+TGG | 0.566381 | 5.2:+36213790 | MS.gene063969:CDS |
AGCCCACTAAGTGACCGCTC+TGG | 0.568756 | 5.2:-36213302 | None:intergenic |
CACCAGAGCGGTCACTTAGT+GGG | 0.569271 | 5.2:+36213300 | MS.gene063969:CDS |
GCATCTCAAACTTTATCAGG+AGG | 0.575972 | 5.2:-36213745 | None:intergenic |
TTCCATATTAGGAAGGGAGA+TGG | 0.579126 | 5.2:+36211765 | MS.gene063969:CDS |
GTGGGCTTCAGATGTTGCCA+AGG | 0.580454 | 5.2:+36213318 | MS.gene063969:CDS |
TGCCACGGCGGCAAATATTG+CGG | 0.584897 | 5.2:-36213792 | None:intergenic |
CGAGATTGTGACACTTGACA+AGG | 0.585644 | 5.2:+36211669 | MS.gene063969:CDS |
GCTTCTTACAGCAGCCACAT+TGG | 0.587792 | 5.2:+36213766 | MS.gene063969:CDS |
TACTCTCAACACATTATCGT+CGG | 0.589716 | 5.2:+36213460 | MS.gene063969:CDS |
TGAGGCCAGTTCATCTAGCA+CGG | 0.589991 | 5.2:-36212946 | None:intergenic |
AGCAGAGAGGTCATGGAAGT+CGG | 0.592681 | 5.2:+36211614 | MS.gene063969:CDS |
CAAAGAATACATCGACGACA+CGG | 0.599106 | 5.2:+36213575 | MS.gene063969:CDS |
GAGGCCAGTTCATCTAGCAC+GGG | 0.606072 | 5.2:-36212945 | None:intergenic |
CATGGATGACGATGGTGACA+TGG | 0.607118 | 5.2:+36213166 | MS.gene063969:CDS |
ATCTTCGAACACGTTCCAGA+AGG | 0.609844 | 5.2:-36212983 | None:intergenic |
ATTCATGAGGATGACTTCAT+CGG | 0.612801 | 5.2:-36211830 | None:intergenic |
CATTCCAAATACTCCTGCCA+CGG | 0.614342 | 5.2:-36213807 | None:intergenic |
TTTGAAATCACTCTACCCGA+TGG | 0.614647 | 5.2:-36213263 | None:intergenic |
GAACTCGCTGAGTCAAAGCA+AGG | 0.614782 | 5.2:-36213019 | None:intergenic |
TGACCGCTCTGGTGAAGTAG+GGG | 0.617312 | 5.2:-36213291 | None:intergenic |
GTTCATCTGATAACACAGAA+AGG | 0.620976 | 5.2:+36213387 | MS.gene063969:CDS |
TAACAGGCAAGCGAATCGCA+GGG | 0.633785 | 5.2:+36211573 | MS.gene063969:CDS |
CACTCGACGGTACTGTTGGT+CGG | 0.637311 | 5.2:+36211854 | MS.gene063969:CDS |
TGAGATGTTCTATTTCATCA+CGG | 0.640698 | 5.2:-36213145 | None:intergenic |
AAGGAGAGTACTGATAGATG+AGG | 0.645637 | 5.2:-36212964 | None:intergenic |
AAATATTGCGGCCACCAATG+TGG | 0.649069 | 5.2:-36213780 | None:intergenic |
TACCGTCGAGTGAATTCATG+AGG | 0.649158 | 5.2:-36211843 | None:intergenic |
TCCAAATACTCCTGCCACGG+CGG | 0.649365 | 5.2:-36213804 | None:intergenic |
ATGTTGCCAAGGACTTTCAG+CGG | 0.651077 | 5.2:+36213329 | MS.gene063969:CDS |
CATCGGCAGTGATTATACAC+CGG | 0.664675 | 5.2:-36211813 | None:intergenic |
ATCCTCATGAATTCACTCGA+CGG | 0.675706 | 5.2:+36211841 | MS.gene063969:CDS |
GCTTCCAGCAACATTTCCAG+CGG | 0.677029 | 5.2:-36213416 | None:intergenic |
GAACATCTCATGGATGACGA+TGG | 0.697862 | 5.2:+36213158 | MS.gene063969:CDS |
AATGCAATGGAAGAAACACA+AGG | 0.739174 | 5.2:+36211514 | None:intergenic |
ATAAAAGGCCTGAAGCAGAG+AGG | 0.740166 | 5.2:+36211601 | MS.gene063969:CDS |
CAGCCCCTACTTCACCAGAG+CGG | 0.766346 | 5.2:+36213288 | MS.gene063969:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TCAAATATGTTATATTAATA+AGG | + | chr5.2:36212880-36212899 | MS.gene063969:intron | 10.0% |
!! | AAGAAAGAGAATTATAATTA+AGG | - | chr5.2:36213073-36213092 | None:intergenic | 15.0% |
!! | AGCATACATAATATTTATAT+CGG | + | chr5.2:36211958-36211977 | MS.gene063969:intron | 15.0% |
!! | CATTATGTTTACATTAAAAT+TGG | + | chr5.2:36212392-36212411 | MS.gene063969:intron | 15.0% |
!!! | AATTGTATATTTTCATGTTT+CGG | + | chr5.2:36212774-36212793 | MS.gene063969:intron | 15.0% |
!!! | AATTTTATTAAAAAGACATC+AGG | - | chr5.2:36212715-36212734 | None:intergenic | 15.0% |
!! | ATATGATATAAAGTGACAAA+AGG | - | chr5.2:36213652-36213671 | None:intergenic | 20.0% |
!! | ATTGGAAATTCAAGTAAATA+TGG | + | chr5.2:36213353-36213372 | MS.gene063969:CDS | 20.0% |
!! | ATTTGAAAACAATCATTTGA+AGG | - | chr5.2:36213236-36213255 | None:intergenic | 20.0% |
!! | CTAAATACATAATAAGTCAT+TGG | + | chr5.2:36212818-36212837 | MS.gene063969:intron | 20.0% |
!! | GTAACTTATATTTAGTTATC+AGG | + | chr5.2:36213121-36213140 | MS.gene063969:intron | 20.0% |
!!! | AGATTTTCTCAACATAAAAT+TGG | + | chr5.2:36213599-36213618 | MS.gene063969:CDS | 20.0% |
!!! | GTATCTAAAATAGAATAGTA+AGG | - | chr5.2:36213921-36213940 | None:intergenic | 20.0% |
! | AAATATAAGTTACTAGTTGC+AGG | - | chr5.2:36213114-36213133 | None:intergenic | 25.0% |
! | AAGTAAATATGGTAGTTCAA+CGG | + | chr5.2:36213364-36213383 | MS.gene063969:CDS | 25.0% |
! | ATTATATACTATGTAGACCA+CGG | + | chr5.2:36213678-36213697 | MS.gene063969:intron | 25.0% |
! | ATTGATGTCTTGTGAAAATA+TGG | - | chr5.2:36212856-36212875 | None:intergenic | 25.0% |
! | ATTTATCCTTCTTCCATATT+AGG | + | chr5.2:36211754-36211773 | MS.gene063969:CDS | 25.0% |
! | GAAATCAGTAAGCAATTATA+TGG | - | chr5.2:36212210-36212229 | None:intergenic | 25.0% |
! | GAAGAAGGATAAATGAATTT+CGG | - | chr5.2:36211748-36211767 | None:intergenic | 25.0% |
! | TGAAAAATTTACAAGATTGC+AGG | - | chr5.2:36212553-36212572 | None:intergenic | 25.0% |
! | TTCACTTTGATGAAAATAGA+AGG | + | chr5.2:36212569-36212588 | MS.gene063969:intron | 25.0% |
!! | CATTTTCATTAAACATCCTA+TGG | + | chr5.2:36212473-36212492 | MS.gene063969:intron | 25.0% |
!! | TGATATCAGTGTTTGAATTT+TGG | + | chr5.2:36212750-36212769 | MS.gene063969:intron | 25.0% |
!! | TTTTCAATCTATCTGTTACA+GGG | + | chr5.2:36213710-36213729 | MS.gene063969:intron | 25.0% |
!!! | TACATGAGTATGATTTTAAC+AGG | + | chr5.2:36211557-36211576 | MS.gene063969:CDS | 25.0% |
AAAACAGTGTTTAGGCTTAA+CGG | + | chr5.2:36212523-36212542 | MS.gene063969:intron | 30.0% | |
ACAGATTCAATGCAAAAATG+TGG | - | chr5.2:36212356-36212375 | None:intergenic | 30.0% | |
ACAGGACAATATTATGCAAT+CGG | + | chr5.2:36211878-36211897 | MS.gene063969:CDS | 30.0% | |
AGGGAGAGAATATAATGTTT+AGG | + | chr5.2:36212636-36212655 | MS.gene063969:intron | 30.0% | |
AGTAAATATGGTAGTTCAAC+GGG | + | chr5.2:36213365-36213384 | MS.gene063969:CDS | 30.0% | |
ATGATCTTCCCTTTGAATTT+AGG | + | chr5.2:36212243-36212262 | MS.gene063969:CDS | 30.0% | |
ATTGAAAAGTTTATAGTCCG+TGG | - | chr5.2:36213698-36213717 | None:intergenic | 30.0% | |
GGATAAAAATTGATCAGGAT+GGG | + | chr5.2:36211641-36211660 | MS.gene063969:CDS | 30.0% | |
GTCTTGGATAAAAATTGATC+AGG | + | chr5.2:36211636-36211655 | MS.gene063969:CDS | 30.0% | |
TCAAACACTGATATCAAGTT+TGG | - | chr5.2:36212746-36212765 | None:intergenic | 30.0% | |
TCAATGAAGATAAGCAATGT+CGG | - | chr5.2:36213530-36213549 | None:intergenic | 30.0% | |
TGAGATGTTCTATTTCATCA+CGG | - | chr5.2:36213148-36213167 | None:intergenic | 30.0% | |
TGATCTTCCCTTTGAATTTA+GGG | + | chr5.2:36212244-36212263 | MS.gene063969:CDS | 30.0% | |
TGATGAAATAGAACATCTCA+TGG | + | chr5.2:36213148-36213167 | MS.gene063969:CDS | 30.0% | |
TGGATAAAAATTGATCAGGA+TGG | + | chr5.2:36211640-36211659 | MS.gene063969:CDS | 30.0% | |
! | AATAAGGATCTTGATTTGAC+AGG | + | chr5.2:36212896-36212915 | MS.gene063969:intron | 30.0% |
! | ATAGTAGTGGAAGAATTATG+AGG | + | chr5.2:36212001-36212020 | MS.gene063969:intron | 30.0% |
! | CTTTTCAATCTATCTGTTAC+AGG | + | chr5.2:36213709-36213728 | MS.gene063969:intron | 30.0% |
! | TAGTAGTGGAAGAATTATGA+GGG | + | chr5.2:36212002-36212021 | MS.gene063969:intron | 30.0% |
! | TGAAATAGGATGTCTTTTGT+TGG | + | chr5.2:36212042-36212061 | MS.gene063969:intron | 30.0% |
! | TTCATTGATAATACTCTTGC+TGG | + | chr5.2:36213542-36213561 | MS.gene063969:intron | 30.0% |
! | TTTTCAAATTCGTTCACCAT+CGG | + | chr5.2:36213247-36213266 | MS.gene063969:CDS | 30.0% |
!! | TGACCAGAAACTTTACTTTT+TGG | + | chr5.2:36212322-36212341 | MS.gene063969:intron | 30.0% |
!! | TTCTAGTTTACAGCAAAAAG+AGG | - | chr5.2:36211935-36211954 | None:intergenic | 30.0% |
!! | TTCTGGATTCAATTTGGTTT+TGG | + | chr5.2:36213859-36213878 | MS.gene063969:CDS | 30.0% |
!!! | AATTTGGTTTTGGTAGTTAC+TGG | + | chr5.2:36213869-36213888 | MS.gene063969:CDS | 30.0% |
!!! | ACCAGAAACTTTACTTTTTG+GGG | + | chr5.2:36212324-36212343 | MS.gene063969:intron | 30.0% |
!!! | GACCAGAAACTTTACTTTTT+GGG | + | chr5.2:36212323-36212342 | MS.gene063969:intron | 30.0% |
AATAGTCGAAGATCTCTAGA+AGG | - | chr5.2:36211721-36211740 | None:intergenic | 35.0% | |
AGAAGAGTAGTCAAAAACTG+AGG | - | chr5.2:36213843-36213862 | None:intergenic | 35.0% | |
ATCCTTCTTCCATATTAGGA+AGG | + | chr5.2:36211758-36211777 | MS.gene063969:CDS | 35.0% | |
ATGCACATCTTTAGATTCTC+AGG | + | chr5.2:36212292-36212311 | MS.gene063969:CDS | 35.0% | |
ATTCATGAGGATGACTTCAT+CGG | - | chr5.2:36211833-36211852 | None:intergenic | 35.0% | |
CAACTCACAAAACAGTGTTT+AGG | + | chr5.2:36212515-36212534 | MS.gene063969:intron | 35.0% | |
CAGAGAGAAAAATCTGGTAA+GGG | + | chr5.2:36211904-36211923 | MS.gene063969:intron | 35.0% | |
CTACTCTTCTGGATTCAATT+TGG | + | chr5.2:36213853-36213872 | MS.gene063969:CDS | 35.0% | |
GAAATTGCAGGAAAAACCAT+AGG | - | chr5.2:36212492-36212511 | None:intergenic | 35.0% | |
GAACGTGTTCGAAGATTTAA+AGG | + | chr5.2:36212990-36213009 | MS.gene063969:CDS | 35.0% | |
GATTCAATGCAAAAATGTGG+AGG | - | chr5.2:36212353-36212372 | None:intergenic | 35.0% | |
GATTTGACAGGTAAATGAAC+TGG | + | chr5.2:36212908-36212927 | MS.gene063969:intron | 35.0% | |
GCACTATTAGGAAATAGTAG+TGG | + | chr5.2:36211988-36212007 | MS.gene063969:intron | 35.0% | |
GTTCATCTGATAACACAGAA+AGG | + | chr5.2:36213387-36213406 | MS.gene063969:CDS | 35.0% | |
TACTCTCAACACATTATCGT+CGG | + | chr5.2:36213460-36213479 | MS.gene063969:CDS | 35.0% | |
TCCCCAAAAAGTAAAGTTTC+TGG | - | chr5.2:36212328-36212347 | None:intergenic | 35.0% | |
TCCTTCTTCCATATTAGGAA+GGG | + | chr5.2:36211759-36211778 | MS.gene063969:CDS | 35.0% | |
TGTAGCACTCAAGATATGTA+GGG | + | chr5.2:36212617-36212636 | MS.gene063969:intron | 35.0% | |
TTGTAGCACTCAAGATATGT+AGG | + | chr5.2:36212616-36212635 | MS.gene063969:intron | 35.0% | |
TTGTCAACCTTGAACAAATC+CGG | + | chr5.2:36211794-36211813 | MS.gene063969:CDS | 35.0% | |
TTTCAAATTCGTTCACCATC+GGG | + | chr5.2:36213248-36213267 | MS.gene063969:CDS | 35.0% | |
! | GAAGCATCTCAAACTTTATC+AGG | - | chr5.2:36213751-36213770 | None:intergenic | 35.0% |
! | TTATACACCGGATTTGTTCA+AGG | - | chr5.2:36211804-36211823 | None:intergenic | 35.0% |
! | TTCTAGAGATCTTCGACTAT+TGG | + | chr5.2:36211720-36211739 | MS.gene063969:CDS | 35.0% |
!! | GTTTTGGTAGTTACTGGAAT+TGG | + | chr5.2:36213875-36213894 | MS.gene063969:CDS | 35.0% |
!! | TCAGTTTTTGACTACTCTTC+TGG | + | chr5.2:36213842-36213861 | MS.gene063969:CDS | 35.0% |
ACAGGTAAATGAACTGGAGA+TGG | + | chr5.2:36212914-36212933 | MS.gene063969:intron | 40.0% | |
AGAAGGCTGCTAAAATCTCT+AGG | + | chr5.2:36212586-36212605 | MS.gene063969:intron | 40.0% | |
AGATGTGTCTGACTGAGAAA+AGG | + | chr5.2:36213192-36213211 | MS.gene063969:CDS | 40.0% | |
ATCCTCATGAATTCACTCGA+CGG | + | chr5.2:36211841-36211860 | MS.gene063969:CDS | 40.0% | |
ATCGGAGTTGTAGCACTATT+AGG | + | chr5.2:36211976-36211995 | MS.gene063969:intron | 40.0% | |
ATCTATCAGTACTCTCCTTC+TGG | + | chr5.2:36212968-36212987 | MS.gene063969:CDS | 40.0% | |
CAAAGAATACATCGACGACA+CGG | + | chr5.2:36213575-36213594 | MS.gene063969:CDS | 40.0% | |
CCAGAGAGAAAAATCTGGTA+AGG | + | chr5.2:36211903-36211922 | MS.gene063969:intron | 40.0% | |
CTTGTCAAGTGTCACAATCT+CGG | - | chr5.2:36211671-36211690 | None:intergenic | 40.0% | |
GCATCTCAAACTTTATCAGG+AGG | - | chr5.2:36213748-36213767 | None:intergenic | 40.0% | |
GTGGAAGAATTATGAGGGTA+CGG | + | chr5.2:36212007-36212026 | MS.gene063969:intron | 40.0% | |
TCCAGAGCCCTAAATTCAAA+GGG | - | chr5.2:36212254-36212273 | None:intergenic | 40.0% | |
TCCCTTCCTAATATGGAAGA+AGG | - | chr5.2:36211763-36211782 | None:intergenic | 40.0% | |
TTCCATATTAGGAAGGGAGA+TGG | + | chr5.2:36211765-36211784 | MS.gene063969:CDS | 40.0% | |
TTTGACTCAGCGAGTTCAAA+AGG | + | chr5.2:36213025-36213044 | MS.gene063969:CDS | 40.0% | |
! | CCTTACCAGATTTTTCTCTC+TGG | - | chr5.2:36211906-36211925 | None:intergenic | 40.0% |
! | GTTCAAAAGGTTGATCAACG+TGG | + | chr5.2:36213038-36213057 | MS.gene063969:intron | 40.0% |
! | TGTGAGTTGTCTGAAATTGC+AGG | - | chr5.2:36212504-36212523 | None:intergenic | 40.0% |
! | TTTGAAATCACTCTACCCGA+TGG | - | chr5.2:36213266-36213285 | None:intergenic | 40.0% |
!! | AAGGAGAGTACTGATAGATG+AGG | - | chr5.2:36212967-36212986 | None:intergenic | 40.0% |
AAATATTGCGGCCACCAATG+TGG | - | chr5.2:36213783-36213802 | None:intergenic | 45.0% | |
AATTCACTCGACGGTACTGT+TGG | + | chr5.2:36211850-36211869 | MS.gene063969:CDS | 45.0% | |
AGCCATCTCCCTTCCTAATA+TGG | - | chr5.2:36211770-36211789 | None:intergenic | 45.0% | |
ATAAAAGGCCTGAAGCAGAG+AGG | + | chr5.2:36211601-36211620 | MS.gene063969:CDS | 45.0% | |
ATATCCCGTGCTAGATGAAC+TGG | + | chr5.2:36212941-36212960 | MS.gene063969:CDS | 45.0% | |
ATCTTCGAACACGTTCCAGA+AGG | - | chr5.2:36212986-36213005 | None:intergenic | 45.0% | |
ATGTTGCCAAGGACTTTCAG+CGG | + | chr5.2:36213329-36213348 | MS.gene063969:CDS | 45.0% | |
CATCGGCAGTGATTATACAC+CGG | - | chr5.2:36211816-36211835 | None:intergenic | 45.0% | |
CATTCCAAATACTCCTGCCA+CGG | - | chr5.2:36213810-36213829 | None:intergenic | 45.0% | |
CGAGATTGTGACACTTGACA+AGG | + | chr5.2:36211669-36211688 | MS.gene063969:CDS | 45.0% | |
CTCCAGAGCCCTAAATTCAA+AGG | - | chr5.2:36212255-36212274 | None:intergenic | 45.0% | |
GAACATCTCATGGATGACGA+TGG | + | chr5.2:36213158-36213177 | MS.gene063969:CDS | 45.0% | |
TACCGTCGAGTGAATTCATG+AGG | - | chr5.2:36211846-36211865 | None:intergenic | 45.0% | |
! | AATCGCAGGGCTGGTATAAA+AGG | + | chr5.2:36211586-36211605 | MS.gene063969:CDS | 45.0% |
! | GGCATTGAGTGGTGTGAAAT+AGG | + | chr5.2:36212028-36212047 | MS.gene063969:intron | 45.0% |
! | TCCCTTTGAATTTAGGGCTC+TGG | + | chr5.2:36212250-36212269 | MS.gene063969:CDS | 45.0% |
AGCAGAGAGGTCATGGAAGT+CGG | + | chr5.2:36211614-36211633 | MS.gene063969:CDS | 50.0% | |
CATGGATGACGATGGTGACA+TGG | + | chr5.2:36213166-36213185 | MS.gene063969:CDS | 50.0% | |
CGGCTCCAGAGAGAAAAATC+TGG | + | chr5.2:36211898-36211917 | MS.gene063969:CDS | 50.0% | |
GAACTCGCTGAGTCAAAGCA+AGG | - | chr5.2:36213022-36213041 | None:intergenic | 50.0% | |
GCTTCCAGCAACATTTCCAG+CGG | - | chr5.2:36213419-36213438 | None:intergenic | 50.0% | |
GCTTCTTACAGCAGCCACAT+TGG | + | chr5.2:36213766-36213785 | MS.gene063969:CDS | 50.0% | |
TAACAGGCAAGCGAATCGCA+GGG | + | chr5.2:36211573-36211592 | MS.gene063969:CDS | 50.0% | |
TCTTACAGCAGCCACATTGG+TGG | + | chr5.2:36213769-36213788 | MS.gene063969:CDS | 50.0% | |
TGAGGCCAGTTCATCTAGCA+CGG | - | chr5.2:36212949-36212968 | None:intergenic | 50.0% | |
TTAACAGGCAAGCGAATCGC+AGG | + | chr5.2:36211572-36211591 | MS.gene063969:CDS | 50.0% | |
TTCCATGACCTCTCTGCTTC+AGG | - | chr5.2:36211612-36211631 | None:intergenic | 50.0% | |
! | TATGAGGGTACGGCATTGAG+TGG | + | chr5.2:36212017-36212036 | MS.gene063969:intron | 50.0% |
ACGGTACTGTTGGTCGGTAC+AGG | + | chr5.2:36211860-36211879 | MS.gene063969:CDS | 55.0% | |
AGTGACCGCTCTGGTGAAGT+AGG | - | chr5.2:36213296-36213315 | None:intergenic | 55.0% | |
CACAGAAAGGATTCAGCCGC+TGG | + | chr5.2:36213400-36213419 | MS.gene063969:CDS | 55.0% | |
CACCAGAGCGGTCACTTAGT+GGG | + | chr5.2:36213300-36213319 | MS.gene063969:CDS | 55.0% | |
CACTCGACGGTACTGTTGGT+CGG | + | chr5.2:36211854-36211873 | MS.gene063969:CDS | 55.0% | |
CCAAGGACTTTCAGCGGCAT+TGG | + | chr5.2:36213335-36213354 | MS.gene063969:CDS | 55.0% | |
CCAATGCCGCTGAAAGTCCT+TGG | - | chr5.2:36213338-36213357 | None:intergenic | 55.0% | |
GAGGCCAGTTCATCTAGCAC+GGG | - | chr5.2:36212948-36212967 | None:intergenic | 55.0% | |
GAGGTCATGGAAGTCGGTCT+TGG | + | chr5.2:36211620-36211639 | MS.gene063969:CDS | 55.0% | |
GTGACCGCTCTGGTGAAGTA+GGG | - | chr5.2:36213295-36213314 | None:intergenic | 55.0% | |
GTGGGCTTCAGATGTTGCCA+AGG | + | chr5.2:36213318-36213337 | MS.gene063969:CDS | 55.0% | |
TCACCAGAGCGGTCACTTAG+TGG | + | chr5.2:36213299-36213318 | MS.gene063969:CDS | 55.0% | |
TCAGCCGCTGGAAATGTTGC+TGG | + | chr5.2:36213412-36213431 | MS.gene063969:CDS | 55.0% | |
TCCAAATACTCCTGCCACGG+CGG | - | chr5.2:36213807-36213826 | None:intergenic | 55.0% | |
TGACCGCTCTGGTGAAGTAG+GGG | - | chr5.2:36213294-36213313 | None:intergenic | 55.0% | |
TGCCACGGCGGCAAATATTG+CGG | - | chr5.2:36213795-36213814 | None:intergenic | 55.0% | |
!! | TAGGGCTCTGGAGTTAGCTC+TGG | + | chr5.2:36212262-36212281 | MS.gene063969:CDS | 55.0% |
AGCCCACTAAGTGACCGCTC+TGG | - | chr5.2:36213305-36213324 | None:intergenic | 60.0% | |
CAGCCCCTACTTCACCAGAG+CGG | + | chr5.2:36213288-36213307 | MS.gene063969:CDS | 60.0% | |
GCAATATTTGCCGCCGTGGC+AGG | + | chr5.2:36213794-36213813 | MS.gene063969:CDS | 60.0% | |
GGCCTGAAGCAGAGAGGTCA+TGG | + | chr5.2:36211607-36211626 | MS.gene063969:CDS | 60.0% | |
AGGCAAGCGAATCGCAGGGC+TGG | + | chr5.2:36211577-36211596 | MS.gene063969:CDS | 65.0% | |
GGCCGCAATATTTGCCGCCG+TGG | + | chr5.2:36213790-36213809 | MS.gene063969:CDS | 65.0% | |
!! | GCCGCCGTGGCAGGAGTATT+TGG | + | chr5.2:36213803-36213822 | MS.gene063969:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 36211520 | 36213961 | 36211520 | ID=MS.gene063969 |
chr5.2 | mRNA | 36211520 | 36213961 | 36211520 | ID=MS.gene063969.t1;Parent=MS.gene063969 |
chr5.2 | exon | 36211520 | 36211919 | 36211520 | ID=MS.gene063969.t1.exon1;Parent=MS.gene063969.t1 |
chr5.2 | CDS | 36211520 | 36211919 | 36211520 | ID=cds.MS.gene063969.t1;Parent=MS.gene063969.t1 |
chr5.2 | exon | 36212243 | 36212313 | 36212243 | ID=MS.gene063969.t1.exon2;Parent=MS.gene063969.t1 |
chr5.2 | CDS | 36212243 | 36212313 | 36212243 | ID=cds.MS.gene063969.t1;Parent=MS.gene063969.t1 |
chr5.2 | exon | 36212918 | 36213046 | 36212918 | ID=MS.gene063969.t1.exon3;Parent=MS.gene063969.t1 |
chr5.2 | CDS | 36212918 | 36213046 | 36212918 | ID=cds.MS.gene063969.t1;Parent=MS.gene063969.t1 |
chr5.2 | exon | 36213143 | 36213481 | 36213143 | ID=MS.gene063969.t1.exon4;Parent=MS.gene063969.t1 |
chr5.2 | CDS | 36213143 | 36213481 | 36213143 | ID=cds.MS.gene063969.t1;Parent=MS.gene063969.t1 |
chr5.2 | exon | 36213573 | 36213620 | 36213573 | ID=MS.gene063969.t1.exon5;Parent=MS.gene063969.t1 |
chr5.2 | CDS | 36213573 | 36213620 | 36213573 | ID=cds.MS.gene063969.t1;Parent=MS.gene063969.t1 |
chr5.2 | exon | 36213731 | 36213961 | 36213731 | ID=MS.gene063969.t1.exon6;Parent=MS.gene063969.t1 |
chr5.2 | CDS | 36213731 | 36213961 | 36213731 | ID=cds.MS.gene063969.t1;Parent=MS.gene063969.t1 |
Gene Sequence |
Protein sequence |