AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene063969

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063969.t1 MTR_5g045590 99.259 405 3 0 1 405 1 405 0.0 825
MS.gene063969.t1 MTR_2g105270 52.941 425 152 5 20 404 31 447 5.77e-143 414
MS.gene063969.t1 MTR_2g105270 53.714 350 114 5 20 329 31 372 2.58e-108 325
MS.gene063969.t1 MTR_2g105270 51.940 335 113 5 20 314 31 357 1.25e-97 296
MS.gene063969.t1 MTR_5g005240 40.092 434 207 8 19 403 14 443 4.95e-96 295
MS.gene063969.t1 MTR_8g088670 39.900 401 182 9 32 403 50 420 2.64e-83 261
MS.gene063969.t1 MTR_1g040495 39.370 381 181 7 40 400 15 365 1.60e-79 249
MS.gene063969.t1 MTR_8g094880 36.952 433 198 10 22 405 18 424 7.93e-75 239
MS.gene063969.t1 MTR_8g094905 36.952 433 198 10 22 405 18 424 7.93e-75 239
MS.gene063969.t1 MTR_1g076210 40.806 397 187 6 31 403 16 388 9.93e-75 238
MS.gene063969.t1 MTR_1g093280 40.806 397 187 6 31 403 16 388 9.93e-75 238
MS.gene063969.t1 MTR_1g106065 34.988 423 227 8 22 403 3 418 1.27e-74 238
MS.gene063969.t1 MTR_7g096170 38.619 391 194 6 32 400 17 383 8.48e-71 228
MS.gene063969.t1 MTR_7g096170 40.395 354 166 5 32 364 17 346 8.88e-66 214
MS.gene063969.t1 MTR_8g088670 40.323 310 130 7 32 314 50 331 8.92e-60 198
MS.gene063969.t1 MTR_8g088670 39.490 314 135 7 32 318 50 335 9.74e-60 197
MS.gene063969.t1 MTR_7g096170 40.252 318 145 5 32 328 17 310 6.73e-54 181
MS.gene063969.t1 MTR_7g096170 39.850 266 135 4 136 400 45 286 8.65e-45 157
MS.gene063969.t1 MTR_1g040475 40.796 201 103 3 27 211 4 204 1.20e-33 125
MS.gene063969.t1 MTR_1g076220 34.052 232 91 5 176 403 54 227 3.94e-30 116
MS.gene063969.t1 MTR_1g093370 42.105 133 69 3 275 403 37 165 4.69e-24 98.2
MS.gene063969.t1 MTR_2g059110 46.753 77 41 0 31 107 8 84 3.98e-17 76.6
MS.gene063969.t1 MTR_2g059120 53.968 63 29 0 45 107 20 82 2.25e-14 68.9
MS.gene063969.t1 MTR_2g100150 36.667 150 77 5 36 181 12 147 4.20e-14 70.1
MS.gene063969.t1 MTR_1g040455 36.264 91 57 1 314 403 7 97 9.86e-14 67.0
MS.gene063969.t1 MTR_1g055050 42.991 107 58 2 121 225 33 138 2.90e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063969.t1 AT2G03620 64.394 396 131 4 17 404 27 420 1.05e-164 469
MS.gene063969.t1 AT2G03620 64.394 396 131 4 17 404 27 420 1.05e-164 469
MS.gene063969.t1 AT1G16010 55.802 405 148 4 28 404 40 441 7.21e-148 427
MS.gene063969.t1 AT1G16010 55.802 405 148 4 28 404 40 441 7.21e-148 427
MS.gene063969.t1 AT1G16010 55.802 405 148 4 28 404 40 441 7.21e-148 427
MS.gene063969.t1 AT1G80900 52.955 423 149 4 20 404 32 442 8.98e-148 427
MS.gene063969.t1 AT1G80900 52.955 423 149 4 20 404 32 442 8.98e-148 427
MS.gene063969.t1 AT3G19640 41.096 438 184 11 40 403 46 483 2.46e-89 278
MS.gene063969.t1 AT5G09690 40.657 396 192 4 26 403 25 395 2.63e-89 276
MS.gene063969.t1 AT5G09690 40.657 396 192 4 26 403 14 384 2.88e-89 275
MS.gene063969.t1 AT5G09690 41.144 367 173 4 26 375 25 365 1.90e-83 260
MS.gene063969.t1 AT3G58970 37.750 400 200 7 32 403 56 434 3.90e-78 248
MS.gene063969.t1 AT5G09690 42.424 330 148 3 26 338 14 318 1.44e-72 230
MS.gene063969.t1 AT5G09690 42.424 330 148 3 26 338 25 329 1.78e-72 230
MS.gene063969.t1 AT5G09690 42.424 330 148 3 26 338 25 329 1.78e-72 230
MS.gene063969.t1 AT5G09690 42.424 330 148 3 26 338 14 318 2.48e-72 229
MS.gene063969.t1 AT5G09690 42.424 330 148 3 26 338 25 329 2.86e-72 230
MS.gene063969.t1 AT5G09690 42.424 330 148 3 26 338 14 318 2.96e-72 229
MS.gene063969.t1 AT5G64560 39.440 393 183 6 40 403 26 392 9.01e-68 220
MS.gene063969.t1 AT5G09690 36.111 396 195 6 26 403 14 369 1.97e-67 218
MS.gene063969.t1 AT5G64560 40.111 359 161 5 40 370 26 358 1.73e-61 203
MS.gene063969.t1 AT5G09690 46.047 215 95 2 26 223 14 224 3.32e-53 179
MS.gene063969.t1 AT5G09690 46.047 215 95 2 26 223 25 235 5.12e-53 179
MS.gene063969.t1 AT5G09690 46.047 215 95 2 26 223 25 235 5.12e-53 179
MS.gene063969.t1 AT5G09690 46.047 215 95 2 26 223 25 235 5.12e-53 179
MS.gene063969.t1 AT4G28580 31.579 399 214 6 29 403 44 407 2.83e-51 177
MS.gene063969.t1 AT5G09720 39.427 279 138 8 36 301 16 276 7.70e-47 162
MS.gene063969.t1 AT5G09720 39.427 279 138 8 36 301 16 276 7.70e-47 162

Find 91 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGATCTTCCCTTTGAATTT+AGG 0.088653 5.2:+36212243 MS.gene063969:CDS
TGATCTTCCCTTTGAATTTA+GGG 0.214507 5.2:+36212244 MS.gene063969:CDS
GCCGCCGTGGCAGGAGTATT+TGG 0.234108 5.2:+36213803 MS.gene063969:CDS
TTCTGGATTCAATTTGGTTT+TGG 0.248178 5.2:+36213859 MS.gene063969:CDS
CTACTCTTCTGGATTCAATT+TGG 0.249380 5.2:+36213853 MS.gene063969:CDS
ATTTATCCTTCTTCCATATT+AGG 0.249449 5.2:+36211754 MS.gene063969:CDS
AGCCATCTCCCTTCCTAATA+TGG 0.295338 5.2:-36211767 None:intergenic
TTCTAGAGATCTTCGACTAT+TGG 0.307849 5.2:+36211720 MS.gene063969:CDS
TCCCTTTGAATTTAGGGCTC+TGG 0.324784 5.2:+36212250 MS.gene063969:CDS
GAACGTGTTCGAAGATTTAA+AGG 0.326254 5.2:+36212990 MS.gene063969:CDS
TTCCATGACCTCTCTGCTTC+AGG 0.330823 5.2:-36211609 None:intergenic
AATCGCAGGGCTGGTATAAA+AGG 0.334220 5.2:+36211586 MS.gene063969:CDS
GAAGCATCTCAAACTTTATC+AGG 0.362455 5.2:-36213748 None:intergenic
ATTGGAAATTCAAGTAAATA+TGG 0.367253 5.2:+36213353 MS.gene063969:CDS
GAAGAAGGATAAATGAATTT+CGG 0.372060 5.2:-36211745 None:intergenic
ATCTATCAGTACTCTCCTTC+TGG 0.372524 5.2:+36212968 MS.gene063969:CDS
AGTAAATATGGTAGTTCAAC+GGG 0.377045 5.2:+36213365 MS.gene063969:CDS
CCAAGGACTTTCAGCGGCAT+TGG 0.377986 5.2:+36213335 MS.gene063969:CDS
GCAATATTTGCCGCCGTGGC+AGG 0.398522 5.2:+36213794 MS.gene063969:CDS
ATGCACATCTTTAGATTCTC+AGG 0.428704 5.2:+36212292 MS.gene063969:CDS
ATATCCCGTGCTAGATGAAC+TGG 0.441183 5.2:+36212941 MS.gene063969:CDS
ATTTGAAAACAATCATTTGA+AGG 0.441921 5.2:-36213233 None:intergenic
GAGGTCATGGAAGTCGGTCT+TGG 0.450393 5.2:+36211620 MS.gene063969:CDS
TTGTCAACCTTGAACAAATC+CGG 0.460150 5.2:+36211794 MS.gene063969:CDS
GATTTGACAGGTAAATGAAC+TGG 0.464980 5.2:+36212908 MS.gene063969:intron
CCAATGCCGCTGAAAGTCCT+TGG 0.466774 5.2:-36213335 None:intergenic
TAGGGCTCTGGAGTTAGCTC+TGG 0.466890 5.2:+36212262 MS.gene063969:CDS
TTTCAAATTCGTTCACCATC+GGG 0.472477 5.2:+36213248 MS.gene063969:CDS
GTATCTAAAATAGAATAGTA+AGG 0.476408 5.2:-36213918 None:intergenic
TTTGACTCAGCGAGTTCAAA+AGG 0.483080 5.2:+36213025 MS.gene063969:CDS
TTAACAGGCAAGCGAATCGC+AGG 0.485254 5.2:+36211572 MS.gene063969:CDS
TCACCAGAGCGGTCACTTAG+TGG 0.486329 5.2:+36213299 MS.gene063969:CDS
CTCCAGAGCCCTAAATTCAA+AGG 0.486570 5.2:-36212252 None:intergenic
CACAGAAAGGATTCAGCCGC+TGG 0.488174 5.2:+36213400 MS.gene063969:CDS
GGCCTGAAGCAGAGAGGTCA+TGG 0.488760 5.2:+36211607 MS.gene063969:CDS
TCCAGAGCCCTAAATTCAAA+GGG 0.491102 5.2:-36212251 None:intergenic
TTATACACCGGATTTGTTCA+AGG 0.499716 5.2:-36211801 None:intergenic
TCCCTTCCTAATATGGAAGA+AGG 0.500264 5.2:-36211760 None:intergenic
AATAGTCGAAGATCTCTAGA+AGG 0.505041 5.2:-36211718 None:intergenic
TCAGCCGCTGGAAATGTTGC+TGG 0.507132 5.2:+36213412 MS.gene063969:CDS
AGTGACCGCTCTGGTGAAGT+AGG 0.509078 5.2:-36213293 None:intergenic
ACGGTACTGTTGGTCGGTAC+AGG 0.509486 5.2:+36211860 MS.gene063969:CDS
GTGACCGCTCTGGTGAAGTA+GGG 0.510030 5.2:-36213292 None:intergenic
ACAGGACAATATTATGCAAT+CGG 0.514813 5.2:+36211878 MS.gene063969:CDS
TCCTTCTTCCATATTAGGAA+GGG 0.517517 5.2:+36211759 MS.gene063969:CDS
ATCCTTCTTCCATATTAGGA+AGG 0.519036 5.2:+36211758 MS.gene063969:CDS
ACAGGTAAATGAACTGGAGA+TGG 0.521690 5.2:+36212914 MS.gene063969:intron
TGATGAAATAGAACATCTCA+TGG 0.526083 5.2:+36213148 MS.gene063969:CDS
AGGCAAGCGAATCGCAGGGC+TGG 0.527115 5.2:+36211577 MS.gene063969:CDS
CTTGTCAAGTGTCACAATCT+CGG 0.527722 5.2:-36211668 None:intergenic
AGATGTGTCTGACTGAGAAA+AGG 0.536746 5.2:+36213192 MS.gene063969:CDS
AAGTAAATATGGTAGTTCAA+CGG 0.547346 5.2:+36213364 MS.gene063969:CDS
TCTTACAGCAGCCACATTGG+TGG 0.559109 5.2:+36213769 MS.gene063969:CDS
AATTCACTCGACGGTACTGT+TGG 0.559813 5.2:+36211850 MS.gene063969:CDS
GGCCGCAATATTTGCCGCCG+TGG 0.566381 5.2:+36213790 MS.gene063969:CDS
AGCCCACTAAGTGACCGCTC+TGG 0.568756 5.2:-36213302 None:intergenic
CACCAGAGCGGTCACTTAGT+GGG 0.569271 5.2:+36213300 MS.gene063969:CDS
GCATCTCAAACTTTATCAGG+AGG 0.575972 5.2:-36213745 None:intergenic
TTCCATATTAGGAAGGGAGA+TGG 0.579126 5.2:+36211765 MS.gene063969:CDS
GTGGGCTTCAGATGTTGCCA+AGG 0.580454 5.2:+36213318 MS.gene063969:CDS
TGCCACGGCGGCAAATATTG+CGG 0.584897 5.2:-36213792 None:intergenic
CGAGATTGTGACACTTGACA+AGG 0.585644 5.2:+36211669 MS.gene063969:CDS
GCTTCTTACAGCAGCCACAT+TGG 0.587792 5.2:+36213766 MS.gene063969:CDS
TACTCTCAACACATTATCGT+CGG 0.589716 5.2:+36213460 MS.gene063969:CDS
TGAGGCCAGTTCATCTAGCA+CGG 0.589991 5.2:-36212946 None:intergenic
AGCAGAGAGGTCATGGAAGT+CGG 0.592681 5.2:+36211614 MS.gene063969:CDS
CAAAGAATACATCGACGACA+CGG 0.599106 5.2:+36213575 MS.gene063969:CDS
GAGGCCAGTTCATCTAGCAC+GGG 0.606072 5.2:-36212945 None:intergenic
CATGGATGACGATGGTGACA+TGG 0.607118 5.2:+36213166 MS.gene063969:CDS
ATCTTCGAACACGTTCCAGA+AGG 0.609844 5.2:-36212983 None:intergenic
ATTCATGAGGATGACTTCAT+CGG 0.612801 5.2:-36211830 None:intergenic
CATTCCAAATACTCCTGCCA+CGG 0.614342 5.2:-36213807 None:intergenic
TTTGAAATCACTCTACCCGA+TGG 0.614647 5.2:-36213263 None:intergenic
GAACTCGCTGAGTCAAAGCA+AGG 0.614782 5.2:-36213019 None:intergenic
TGACCGCTCTGGTGAAGTAG+GGG 0.617312 5.2:-36213291 None:intergenic
GTTCATCTGATAACACAGAA+AGG 0.620976 5.2:+36213387 MS.gene063969:CDS
TAACAGGCAAGCGAATCGCA+GGG 0.633785 5.2:+36211573 MS.gene063969:CDS
CACTCGACGGTACTGTTGGT+CGG 0.637311 5.2:+36211854 MS.gene063969:CDS
TGAGATGTTCTATTTCATCA+CGG 0.640698 5.2:-36213145 None:intergenic
AAGGAGAGTACTGATAGATG+AGG 0.645637 5.2:-36212964 None:intergenic
AAATATTGCGGCCACCAATG+TGG 0.649069 5.2:-36213780 None:intergenic
TACCGTCGAGTGAATTCATG+AGG 0.649158 5.2:-36211843 None:intergenic
TCCAAATACTCCTGCCACGG+CGG 0.649365 5.2:-36213804 None:intergenic
ATGTTGCCAAGGACTTTCAG+CGG 0.651077 5.2:+36213329 MS.gene063969:CDS
CATCGGCAGTGATTATACAC+CGG 0.664675 5.2:-36211813 None:intergenic
ATCCTCATGAATTCACTCGA+CGG 0.675706 5.2:+36211841 MS.gene063969:CDS
GCTTCCAGCAACATTTCCAG+CGG 0.677029 5.2:-36213416 None:intergenic
GAACATCTCATGGATGACGA+TGG 0.697862 5.2:+36213158 MS.gene063969:CDS
AATGCAATGGAAGAAACACA+AGG 0.739174 5.2:+36211514 None:intergenic
ATAAAAGGCCTGAAGCAGAG+AGG 0.740166 5.2:+36211601 MS.gene063969:CDS
CAGCCCCTACTTCACCAGAG+CGG 0.766346 5.2:+36213288 MS.gene063969:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAATATGTTATATTAATA+AGG + chr5.2:36212880-36212899 MS.gene063969:intron 10.0%
!! AAGAAAGAGAATTATAATTA+AGG - chr5.2:36213073-36213092 None:intergenic 15.0%
!! AGCATACATAATATTTATAT+CGG + chr5.2:36211958-36211977 MS.gene063969:intron 15.0%
!! CATTATGTTTACATTAAAAT+TGG + chr5.2:36212392-36212411 MS.gene063969:intron 15.0%
!!! AATTGTATATTTTCATGTTT+CGG + chr5.2:36212774-36212793 MS.gene063969:intron 15.0%
!!! AATTTTATTAAAAAGACATC+AGG - chr5.2:36212715-36212734 None:intergenic 15.0%
!! ATATGATATAAAGTGACAAA+AGG - chr5.2:36213652-36213671 None:intergenic 20.0%
!! ATTGGAAATTCAAGTAAATA+TGG + chr5.2:36213353-36213372 MS.gene063969:CDS 20.0%
!! ATTTGAAAACAATCATTTGA+AGG - chr5.2:36213236-36213255 None:intergenic 20.0%
!! CTAAATACATAATAAGTCAT+TGG + chr5.2:36212818-36212837 MS.gene063969:intron 20.0%
!! GTAACTTATATTTAGTTATC+AGG + chr5.2:36213121-36213140 MS.gene063969:intron 20.0%
!!! AGATTTTCTCAACATAAAAT+TGG + chr5.2:36213599-36213618 MS.gene063969:CDS 20.0%
!!! GTATCTAAAATAGAATAGTA+AGG - chr5.2:36213921-36213940 None:intergenic 20.0%
! AAATATAAGTTACTAGTTGC+AGG - chr5.2:36213114-36213133 None:intergenic 25.0%
! AAGTAAATATGGTAGTTCAA+CGG + chr5.2:36213364-36213383 MS.gene063969:CDS 25.0%
! ATTATATACTATGTAGACCA+CGG + chr5.2:36213678-36213697 MS.gene063969:intron 25.0%
! ATTGATGTCTTGTGAAAATA+TGG - chr5.2:36212856-36212875 None:intergenic 25.0%
! ATTTATCCTTCTTCCATATT+AGG + chr5.2:36211754-36211773 MS.gene063969:CDS 25.0%
! GAAATCAGTAAGCAATTATA+TGG - chr5.2:36212210-36212229 None:intergenic 25.0%
! GAAGAAGGATAAATGAATTT+CGG - chr5.2:36211748-36211767 None:intergenic 25.0%
! TGAAAAATTTACAAGATTGC+AGG - chr5.2:36212553-36212572 None:intergenic 25.0%
! TTCACTTTGATGAAAATAGA+AGG + chr5.2:36212569-36212588 MS.gene063969:intron 25.0%
!! CATTTTCATTAAACATCCTA+TGG + chr5.2:36212473-36212492 MS.gene063969:intron 25.0%
!! TGATATCAGTGTTTGAATTT+TGG + chr5.2:36212750-36212769 MS.gene063969:intron 25.0%
!! TTTTCAATCTATCTGTTACA+GGG + chr5.2:36213710-36213729 MS.gene063969:intron 25.0%
!!! TACATGAGTATGATTTTAAC+AGG + chr5.2:36211557-36211576 MS.gene063969:CDS 25.0%
AAAACAGTGTTTAGGCTTAA+CGG + chr5.2:36212523-36212542 MS.gene063969:intron 30.0%
ACAGATTCAATGCAAAAATG+TGG - chr5.2:36212356-36212375 None:intergenic 30.0%
ACAGGACAATATTATGCAAT+CGG + chr5.2:36211878-36211897 MS.gene063969:CDS 30.0%
AGGGAGAGAATATAATGTTT+AGG + chr5.2:36212636-36212655 MS.gene063969:intron 30.0%
AGTAAATATGGTAGTTCAAC+GGG + chr5.2:36213365-36213384 MS.gene063969:CDS 30.0%
ATGATCTTCCCTTTGAATTT+AGG + chr5.2:36212243-36212262 MS.gene063969:CDS 30.0%
ATTGAAAAGTTTATAGTCCG+TGG - chr5.2:36213698-36213717 None:intergenic 30.0%
GGATAAAAATTGATCAGGAT+GGG + chr5.2:36211641-36211660 MS.gene063969:CDS 30.0%
GTCTTGGATAAAAATTGATC+AGG + chr5.2:36211636-36211655 MS.gene063969:CDS 30.0%
TCAAACACTGATATCAAGTT+TGG - chr5.2:36212746-36212765 None:intergenic 30.0%
TCAATGAAGATAAGCAATGT+CGG - chr5.2:36213530-36213549 None:intergenic 30.0%
TGAGATGTTCTATTTCATCA+CGG - chr5.2:36213148-36213167 None:intergenic 30.0%
TGATCTTCCCTTTGAATTTA+GGG + chr5.2:36212244-36212263 MS.gene063969:CDS 30.0%
TGATGAAATAGAACATCTCA+TGG + chr5.2:36213148-36213167 MS.gene063969:CDS 30.0%
TGGATAAAAATTGATCAGGA+TGG + chr5.2:36211640-36211659 MS.gene063969:CDS 30.0%
! AATAAGGATCTTGATTTGAC+AGG + chr5.2:36212896-36212915 MS.gene063969:intron 30.0%
! ATAGTAGTGGAAGAATTATG+AGG + chr5.2:36212001-36212020 MS.gene063969:intron 30.0%
! CTTTTCAATCTATCTGTTAC+AGG + chr5.2:36213709-36213728 MS.gene063969:intron 30.0%
! TAGTAGTGGAAGAATTATGA+GGG + chr5.2:36212002-36212021 MS.gene063969:intron 30.0%
! TGAAATAGGATGTCTTTTGT+TGG + chr5.2:36212042-36212061 MS.gene063969:intron 30.0%
! TTCATTGATAATACTCTTGC+TGG + chr5.2:36213542-36213561 MS.gene063969:intron 30.0%
! TTTTCAAATTCGTTCACCAT+CGG + chr5.2:36213247-36213266 MS.gene063969:CDS 30.0%
!! TGACCAGAAACTTTACTTTT+TGG + chr5.2:36212322-36212341 MS.gene063969:intron 30.0%
!! TTCTAGTTTACAGCAAAAAG+AGG - chr5.2:36211935-36211954 None:intergenic 30.0%
!! TTCTGGATTCAATTTGGTTT+TGG + chr5.2:36213859-36213878 MS.gene063969:CDS 30.0%
!!! AATTTGGTTTTGGTAGTTAC+TGG + chr5.2:36213869-36213888 MS.gene063969:CDS 30.0%
!!! ACCAGAAACTTTACTTTTTG+GGG + chr5.2:36212324-36212343 MS.gene063969:intron 30.0%
!!! GACCAGAAACTTTACTTTTT+GGG + chr5.2:36212323-36212342 MS.gene063969:intron 30.0%
AATAGTCGAAGATCTCTAGA+AGG - chr5.2:36211721-36211740 None:intergenic 35.0%
AGAAGAGTAGTCAAAAACTG+AGG - chr5.2:36213843-36213862 None:intergenic 35.0%
ATCCTTCTTCCATATTAGGA+AGG + chr5.2:36211758-36211777 MS.gene063969:CDS 35.0%
ATGCACATCTTTAGATTCTC+AGG + chr5.2:36212292-36212311 MS.gene063969:CDS 35.0%
ATTCATGAGGATGACTTCAT+CGG - chr5.2:36211833-36211852 None:intergenic 35.0%
CAACTCACAAAACAGTGTTT+AGG + chr5.2:36212515-36212534 MS.gene063969:intron 35.0%
CAGAGAGAAAAATCTGGTAA+GGG + chr5.2:36211904-36211923 MS.gene063969:intron 35.0%
CTACTCTTCTGGATTCAATT+TGG + chr5.2:36213853-36213872 MS.gene063969:CDS 35.0%
GAAATTGCAGGAAAAACCAT+AGG - chr5.2:36212492-36212511 None:intergenic 35.0%
GAACGTGTTCGAAGATTTAA+AGG + chr5.2:36212990-36213009 MS.gene063969:CDS 35.0%
GATTCAATGCAAAAATGTGG+AGG - chr5.2:36212353-36212372 None:intergenic 35.0%
GATTTGACAGGTAAATGAAC+TGG + chr5.2:36212908-36212927 MS.gene063969:intron 35.0%
GCACTATTAGGAAATAGTAG+TGG + chr5.2:36211988-36212007 MS.gene063969:intron 35.0%
GTTCATCTGATAACACAGAA+AGG + chr5.2:36213387-36213406 MS.gene063969:CDS 35.0%
TACTCTCAACACATTATCGT+CGG + chr5.2:36213460-36213479 MS.gene063969:CDS 35.0%
TCCCCAAAAAGTAAAGTTTC+TGG - chr5.2:36212328-36212347 None:intergenic 35.0%
TCCTTCTTCCATATTAGGAA+GGG + chr5.2:36211759-36211778 MS.gene063969:CDS 35.0%
TGTAGCACTCAAGATATGTA+GGG + chr5.2:36212617-36212636 MS.gene063969:intron 35.0%
TTGTAGCACTCAAGATATGT+AGG + chr5.2:36212616-36212635 MS.gene063969:intron 35.0%
TTGTCAACCTTGAACAAATC+CGG + chr5.2:36211794-36211813 MS.gene063969:CDS 35.0%
TTTCAAATTCGTTCACCATC+GGG + chr5.2:36213248-36213267 MS.gene063969:CDS 35.0%
! GAAGCATCTCAAACTTTATC+AGG - chr5.2:36213751-36213770 None:intergenic 35.0%
! TTATACACCGGATTTGTTCA+AGG - chr5.2:36211804-36211823 None:intergenic 35.0%
! TTCTAGAGATCTTCGACTAT+TGG + chr5.2:36211720-36211739 MS.gene063969:CDS 35.0%
!! GTTTTGGTAGTTACTGGAAT+TGG + chr5.2:36213875-36213894 MS.gene063969:CDS 35.0%
!! TCAGTTTTTGACTACTCTTC+TGG + chr5.2:36213842-36213861 MS.gene063969:CDS 35.0%
ACAGGTAAATGAACTGGAGA+TGG + chr5.2:36212914-36212933 MS.gene063969:intron 40.0%
AGAAGGCTGCTAAAATCTCT+AGG + chr5.2:36212586-36212605 MS.gene063969:intron 40.0%
AGATGTGTCTGACTGAGAAA+AGG + chr5.2:36213192-36213211 MS.gene063969:CDS 40.0%
ATCCTCATGAATTCACTCGA+CGG + chr5.2:36211841-36211860 MS.gene063969:CDS 40.0%
ATCGGAGTTGTAGCACTATT+AGG + chr5.2:36211976-36211995 MS.gene063969:intron 40.0%
ATCTATCAGTACTCTCCTTC+TGG + chr5.2:36212968-36212987 MS.gene063969:CDS 40.0%
CAAAGAATACATCGACGACA+CGG + chr5.2:36213575-36213594 MS.gene063969:CDS 40.0%
CCAGAGAGAAAAATCTGGTA+AGG + chr5.2:36211903-36211922 MS.gene063969:intron 40.0%
CTTGTCAAGTGTCACAATCT+CGG - chr5.2:36211671-36211690 None:intergenic 40.0%
GCATCTCAAACTTTATCAGG+AGG - chr5.2:36213748-36213767 None:intergenic 40.0%
GTGGAAGAATTATGAGGGTA+CGG + chr5.2:36212007-36212026 MS.gene063969:intron 40.0%
TCCAGAGCCCTAAATTCAAA+GGG - chr5.2:36212254-36212273 None:intergenic 40.0%
TCCCTTCCTAATATGGAAGA+AGG - chr5.2:36211763-36211782 None:intergenic 40.0%
TTCCATATTAGGAAGGGAGA+TGG + chr5.2:36211765-36211784 MS.gene063969:CDS 40.0%
TTTGACTCAGCGAGTTCAAA+AGG + chr5.2:36213025-36213044 MS.gene063969:CDS 40.0%
! CCTTACCAGATTTTTCTCTC+TGG - chr5.2:36211906-36211925 None:intergenic 40.0%
! GTTCAAAAGGTTGATCAACG+TGG + chr5.2:36213038-36213057 MS.gene063969:intron 40.0%
! TGTGAGTTGTCTGAAATTGC+AGG - chr5.2:36212504-36212523 None:intergenic 40.0%
! TTTGAAATCACTCTACCCGA+TGG - chr5.2:36213266-36213285 None:intergenic 40.0%
!! AAGGAGAGTACTGATAGATG+AGG - chr5.2:36212967-36212986 None:intergenic 40.0%
AAATATTGCGGCCACCAATG+TGG - chr5.2:36213783-36213802 None:intergenic 45.0%
AATTCACTCGACGGTACTGT+TGG + chr5.2:36211850-36211869 MS.gene063969:CDS 45.0%
AGCCATCTCCCTTCCTAATA+TGG - chr5.2:36211770-36211789 None:intergenic 45.0%
ATAAAAGGCCTGAAGCAGAG+AGG + chr5.2:36211601-36211620 MS.gene063969:CDS 45.0%
ATATCCCGTGCTAGATGAAC+TGG + chr5.2:36212941-36212960 MS.gene063969:CDS 45.0%
ATCTTCGAACACGTTCCAGA+AGG - chr5.2:36212986-36213005 None:intergenic 45.0%
ATGTTGCCAAGGACTTTCAG+CGG + chr5.2:36213329-36213348 MS.gene063969:CDS 45.0%
CATCGGCAGTGATTATACAC+CGG - chr5.2:36211816-36211835 None:intergenic 45.0%
CATTCCAAATACTCCTGCCA+CGG - chr5.2:36213810-36213829 None:intergenic 45.0%
CGAGATTGTGACACTTGACA+AGG + chr5.2:36211669-36211688 MS.gene063969:CDS 45.0%
CTCCAGAGCCCTAAATTCAA+AGG - chr5.2:36212255-36212274 None:intergenic 45.0%
GAACATCTCATGGATGACGA+TGG + chr5.2:36213158-36213177 MS.gene063969:CDS 45.0%
TACCGTCGAGTGAATTCATG+AGG - chr5.2:36211846-36211865 None:intergenic 45.0%
! AATCGCAGGGCTGGTATAAA+AGG + chr5.2:36211586-36211605 MS.gene063969:CDS 45.0%
! GGCATTGAGTGGTGTGAAAT+AGG + chr5.2:36212028-36212047 MS.gene063969:intron 45.0%
! TCCCTTTGAATTTAGGGCTC+TGG + chr5.2:36212250-36212269 MS.gene063969:CDS 45.0%
AGCAGAGAGGTCATGGAAGT+CGG + chr5.2:36211614-36211633 MS.gene063969:CDS 50.0%
CATGGATGACGATGGTGACA+TGG + chr5.2:36213166-36213185 MS.gene063969:CDS 50.0%
CGGCTCCAGAGAGAAAAATC+TGG + chr5.2:36211898-36211917 MS.gene063969:CDS 50.0%
GAACTCGCTGAGTCAAAGCA+AGG - chr5.2:36213022-36213041 None:intergenic 50.0%
GCTTCCAGCAACATTTCCAG+CGG - chr5.2:36213419-36213438 None:intergenic 50.0%
GCTTCTTACAGCAGCCACAT+TGG + chr5.2:36213766-36213785 MS.gene063969:CDS 50.0%
TAACAGGCAAGCGAATCGCA+GGG + chr5.2:36211573-36211592 MS.gene063969:CDS 50.0%
TCTTACAGCAGCCACATTGG+TGG + chr5.2:36213769-36213788 MS.gene063969:CDS 50.0%
TGAGGCCAGTTCATCTAGCA+CGG - chr5.2:36212949-36212968 None:intergenic 50.0%
TTAACAGGCAAGCGAATCGC+AGG + chr5.2:36211572-36211591 MS.gene063969:CDS 50.0%
TTCCATGACCTCTCTGCTTC+AGG - chr5.2:36211612-36211631 None:intergenic 50.0%
! TATGAGGGTACGGCATTGAG+TGG + chr5.2:36212017-36212036 MS.gene063969:intron 50.0%
ACGGTACTGTTGGTCGGTAC+AGG + chr5.2:36211860-36211879 MS.gene063969:CDS 55.0%
AGTGACCGCTCTGGTGAAGT+AGG - chr5.2:36213296-36213315 None:intergenic 55.0%
CACAGAAAGGATTCAGCCGC+TGG + chr5.2:36213400-36213419 MS.gene063969:CDS 55.0%
CACCAGAGCGGTCACTTAGT+GGG + chr5.2:36213300-36213319 MS.gene063969:CDS 55.0%
CACTCGACGGTACTGTTGGT+CGG + chr5.2:36211854-36211873 MS.gene063969:CDS 55.0%
CCAAGGACTTTCAGCGGCAT+TGG + chr5.2:36213335-36213354 MS.gene063969:CDS 55.0%
CCAATGCCGCTGAAAGTCCT+TGG - chr5.2:36213338-36213357 None:intergenic 55.0%
GAGGCCAGTTCATCTAGCAC+GGG - chr5.2:36212948-36212967 None:intergenic 55.0%
GAGGTCATGGAAGTCGGTCT+TGG + chr5.2:36211620-36211639 MS.gene063969:CDS 55.0%
GTGACCGCTCTGGTGAAGTA+GGG - chr5.2:36213295-36213314 None:intergenic 55.0%
GTGGGCTTCAGATGTTGCCA+AGG + chr5.2:36213318-36213337 MS.gene063969:CDS 55.0%
TCACCAGAGCGGTCACTTAG+TGG + chr5.2:36213299-36213318 MS.gene063969:CDS 55.0%
TCAGCCGCTGGAAATGTTGC+TGG + chr5.2:36213412-36213431 MS.gene063969:CDS 55.0%
TCCAAATACTCCTGCCACGG+CGG - chr5.2:36213807-36213826 None:intergenic 55.0%
TGACCGCTCTGGTGAAGTAG+GGG - chr5.2:36213294-36213313 None:intergenic 55.0%
TGCCACGGCGGCAAATATTG+CGG - chr5.2:36213795-36213814 None:intergenic 55.0%
!! TAGGGCTCTGGAGTTAGCTC+TGG + chr5.2:36212262-36212281 MS.gene063969:CDS 55.0%
AGCCCACTAAGTGACCGCTC+TGG - chr5.2:36213305-36213324 None:intergenic 60.0%
CAGCCCCTACTTCACCAGAG+CGG + chr5.2:36213288-36213307 MS.gene063969:CDS 60.0%
GCAATATTTGCCGCCGTGGC+AGG + chr5.2:36213794-36213813 MS.gene063969:CDS 60.0%
GGCCTGAAGCAGAGAGGTCA+TGG + chr5.2:36211607-36211626 MS.gene063969:CDS 60.0%
AGGCAAGCGAATCGCAGGGC+TGG + chr5.2:36211577-36211596 MS.gene063969:CDS 65.0%
GGCCGCAATATTTGCCGCCG+TGG + chr5.2:36213790-36213809 MS.gene063969:CDS 65.0%
!! GCCGCCGTGGCAGGAGTATT+TGG + chr5.2:36213803-36213822 MS.gene063969:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 36211520 36213961 36211520 ID=MS.gene063969
chr5.2 mRNA 36211520 36213961 36211520 ID=MS.gene063969.t1;Parent=MS.gene063969
chr5.2 exon 36211520 36211919 36211520 ID=MS.gene063969.t1.exon1;Parent=MS.gene063969.t1
chr5.2 CDS 36211520 36211919 36211520 ID=cds.MS.gene063969.t1;Parent=MS.gene063969.t1
chr5.2 exon 36212243 36212313 36212243 ID=MS.gene063969.t1.exon2;Parent=MS.gene063969.t1
chr5.2 CDS 36212243 36212313 36212243 ID=cds.MS.gene063969.t1;Parent=MS.gene063969.t1
chr5.2 exon 36212918 36213046 36212918 ID=MS.gene063969.t1.exon3;Parent=MS.gene063969.t1
chr5.2 CDS 36212918 36213046 36212918 ID=cds.MS.gene063969.t1;Parent=MS.gene063969.t1
chr5.2 exon 36213143 36213481 36213143 ID=MS.gene063969.t1.exon4;Parent=MS.gene063969.t1
chr5.2 CDS 36213143 36213481 36213143 ID=cds.MS.gene063969.t1;Parent=MS.gene063969.t1
chr5.2 exon 36213573 36213620 36213573 ID=MS.gene063969.t1.exon5;Parent=MS.gene063969.t1
chr5.2 CDS 36213573 36213620 36213573 ID=cds.MS.gene063969.t1;Parent=MS.gene063969.t1
chr5.2 exon 36213731 36213961 36213731 ID=MS.gene063969.t1.exon6;Parent=MS.gene063969.t1
chr5.2 CDS 36213731 36213961 36213731 ID=cds.MS.gene063969.t1;Parent=MS.gene063969.t1
Gene Sequence

>MS.gene063969

ATGGAAGAAACACAAGGACAGTTTTATGTTTCTAGTCTACATGAGTATGATTTTAACAGGCAAGCGAATCGCAGGGCTGGTATAAAAGGCCTGAAGCAGAGAGGTCATGGAAGTCGGTCTTGGATAAAAATTGATCAGGATGGGAATTCCGAGATTGTGACACTTGACAAGGCTACGATTATGAGACATTGTTCTTTGCCTTCTAGAGATCTTCGACTATTGGATCCGAAATTCATTTATCCTTCTTCCATATTAGGAAGGGAGATGGCTATTGTTGTCAACCTTGAACAAATCCGGTGTATAATCACTGCCGATGAAGTCATCCTCATGAATTCACTCGACGGTACTGTTGGTCGGTACAGGACAATATTATGCAATCGGCTCCAGAGAGAAAAATCTGGTAAGGGTTGTTCCTCTTTTTGCTGTAAACTAGAATTTAGCATACATAATATTTATATCGGAGTTGTAGCACTATTAGGAAATAGTAGTGGAAGAATTATGAGGGTACGGCATTGAGTGGTGTGAAATAGGATGTCTTTTGTTGGAAACAATTTGAAAATCTTAATTGAATATGATACTTCTTCAGCTTTAAGTAGCTGTTGCGATTTGTTTCTTGAATGCTATATTTGTTTATTTTGCTTCAAACTATTGCGAGTGTTTTAAAGCTTTTCGATTGACGTAATTACTCCATATAATTGCTTACTGATTTCAATTTTTGAACAGATGATCTTCCCTTTGAATTTAGGGCTCTGGAGTTAGCTCTGGAATTGACATGCACATCTTTAGATTCTCAGGTATTAATTGACCAGAAACTTTACTTTTTGGGGAGTCCTCCACATTTTTGCATTGAATCTGTGATAGTTCATTTTCTACATTATGTTTACATTAAAATTGGCAGCACTGAGTTTATCTGCTTGCTTATTTTGATTAAATTATGTAGTTCATTATTAGCTCATTTTCATTAAACATCCTATGGTTTTTCCTGCAATTTCAGACAACTCACAAAACAGTGTTTAGGCTTAACGGACTGCCTGCAATCTTGTAAATTTTTCACTTTGATGAAAATAGAAGGCTGCTAAAATCTCTAGGATTAGTTTTGTAGCACTCAAGATATGTAGGGAGAGAATATAATGTTTAGGTAAAATCTGAAACTGTAAGATAAAATTCAAGATATTATTGTAGCATAACATAACCTGATGTCTTTTTAATAAAATTCAAGAGCTCCAAACTTGATATCAGTGTTTGAATTTTGGTAATTGTATATTTTCATGTTTCGGAGTTCTACATTATATAGTTTGCTAAATACATAATAAGTCATTGGTTAAGCTATTAGCCATATTTTCACAAGACATCAATCATCTCAAATATGTTATATTAATAAGGATCTTGATTTGACAGGTAAATGAACTGGAGATGGAAATATATCCCGTGCTAGATGAACTGGCCTCATCTATCAGTACTCTCCTTCTGGAACGTGTTCGAAGATTTAAAGGTCATCTCCTTGCTTTGACTCAGCGAGTTCAAAAGGTTGATCAACGTGGAATTCTCATCCTTAATTATAATTCTCTTTCTTTTTTCTAGCTTTCTGTGACCTGCAACTAGTAACTTATATTTAGTTATCAGGTCCGTGATGAAATAGAACATCTCATGGATGACGATGGTGACATGGCTGAGATGTGTCTGACTGAGAAAAGGAGAAGACTAGATGCTTCTCCTTCAAATGATTGTTTTCAAATTCGTTCACCATCGGGTAGAGTGATTTCAAAATCAGCCCCTACTTCACCAGAGCGGTCACTTAGTGGGCTTCAGATGTTGCCAAGGACTTTCAGCGGCATTGGAAATTCAAGTAAATATGGTAGTTCAACGGGTTCATCTGATAACACAGAAAGGATTCAGCCGCTGGAAATGTTGCTGGAAGCGTACTTTATCGTCATTGATAATACTCTCAACACATTATCGTCGGTATGTAAATGTTAACTTCATTCACAGCTGTAGTTTTAGTGTATACCGACATTGCTTATCTTCATTGATAATACTCTTGCTGGTAATACAGCTCAAAGAATACATCGACGACACGGAAGATTTTCTCAACATAAAATTGGTAAGCTAAGATTAACGATTAGCAACATCCTTTTGTCACTTTATATCATATATATTTATTATATACTATGTAGACCACGGACTATAAACTTTTCAATCTATCTGTTACAGGGAAATATTCAAAACCTCCTGATAAAGTTTGAGATGCTTCTTACAGCAGCCACATTGGTGGCCGCAATATTTGCCGCCGTGGCAGGAGTATTTGGAATGAACTTTGAAACCTCAGTTTTTGACTACTCTTCTGGATTCAATTTGGTTTTGGTAGTTACTGGAATTGGTTGTGTAGCATTGTATTTCGCCTTACTATTCTATTTTAGATACAAAAAAGTGCTTCCAGAATGA
Protein sequence

>MS.gene063969.t1

MEETQGQFYVSSLHEYDFNRQANRRAGIKGLKQRGHGSRSWIKIDQDGNSEIVTLDKATIMRHCSLPSRDLRLLDPKFIYPSSILGREMAIVVNLEQIRCIITADEVILMNSLDGTVGRYRTILCNRLQREKSDDLPFEFRALELALELTCTSLDSQVNELEMEIYPVLDELASSISTLLLERVRRFKGHLLALTQRVQKVRDEIEHLMDDDGDMAEMCLTEKRRRLDASPSNDCFQIRSPSGRVISKSAPTSPERSLSGLQMLPRTFSGIGNSSKYGSSTGSSDNTERIQPLEMLLEAYFIVIDNTLNTLSSLKEYIDDTEDFLNIKLGNIQNLLIKFEMLLTAATLVAAIFAAVAGVFGMNFETSVFDYSSGFNLVLVVTGIGCVALYFALLFYFRYKKVLPE