Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064135.t1 | XP_003609890.1 | 78.6 | 345 | 55 | 3 | 1 | 330 | 1 | 341 | 3.10E-119 | 438.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064135.t1 | Q9C5W0 | 36.4 | 363 | 172 | 10 | 1 | 318 | 1 | 349 | 2.4e-19 | 97.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064135.t1 | G7JR20 | 78.6 | 345 | 55 | 3 | 1 | 330 | 1 | 341 | 2.2e-119 | 438.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene064135 | 0.820075 | 8.31E-53 | -1.69E-46 |
| MS.gene049378 | MS.gene064135 | 0.853348 | 2.54E-61 | -1.69E-46 |
| MS.gene049403 | MS.gene064135 | 0.809823 | 1.56E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene064135 | 0.815962 | 7.06E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene064135 | 0.811547 | 6.63E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene064135 | 0.811405 | 7.12E-51 | -1.69E-46 |
| MS.gene050987 | MS.gene064135 | 0.822406 | 2.41E-53 | -1.69E-46 |
| MS.gene05119 | MS.gene064135 | -0.806656 | 7.40E-50 | -1.69E-46 |
| MS.gene052176 | MS.gene064135 | 0.857702 | 1.36E-62 | -1.69E-46 |
| MS.gene052389 | MS.gene064135 | 0.822315 | 2.53E-53 | -1.69E-46 |
| MS.gene052464 | MS.gene064135 | 0.822095 | 2.85E-53 | -1.69E-46 |
| MS.gene054930 | MS.gene064135 | 0.879185 | 1.53E-69 | -1.69E-46 |
| MS.gene055701 | MS.gene064135 | 0.806115 | 9.62E-50 | -1.69E-46 |
| MS.gene05761 | MS.gene064135 | 0.841142 | 5.68E-58 | -1.69E-46 |
| MS.gene060683 | MS.gene064135 | 0.837263 | 5.76E-57 | -1.69E-46 |
| MS.gene060685 | MS.gene064135 | 0.835189 | 1.94E-56 | -1.69E-46 |
| MS.gene060918 | MS.gene064135 | 0.807209 | 5.65E-50 | -1.69E-46 |
| MS.gene060998 | MS.gene064135 | 0.803995 | 2.67E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064135.t1 | MTR_4g124080 | 87.246 | 345 | 25 | 3 | 1 | 330 | 1 | 341 | 1.65e-174 | 487 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064135.t1 | AT1G48300 | 35.440 | 364 | 174 | 14 | 1 | 318 | 1 | 349 | 2.39e-34 | 129 |
Find 78 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCTGAATTACCTCAATT+AGG | 0.183509 | 8.4:-10792536 | MS.gene064135:CDS |
| AATAATGCATCTCTTGTTAC+TGG | 0.282326 | 8.4:-10791942 | MS.gene064135:CDS |
| CTTCTGAATTACCTCAATTA+GGG | 0.289665 | 8.4:-10792535 | MS.gene064135:CDS |
| TGTTGATCTTAACATGGTTC+AGG | 0.306649 | 8.4:-10791715 | MS.gene064135:CDS |
| TCGGAGAGTGAGGGTGTCTA+TGG | 0.311445 | 8.4:-10792678 | MS.gene064135:CDS |
| GAATTCTGAATTCTCACATT+AGG | 0.340007 | 8.4:+10791738 | None:intergenic |
| TACTTCACATCATCATGTTA+TGG | 0.361031 | 8.4:-10791979 | MS.gene064135:CDS |
| AATGAAACAAGAGAAGAAAA+AGG | 0.361365 | 8.4:-10792168 | MS.gene064135:CDS |
| TCCTAATCTACCTAATCTCT+TGG | 0.370750 | 8.4:-10792501 | MS.gene064135:CDS |
| CCCAAGAGATTAGGTAGATT+AGG | 0.382872 | 8.4:+10792500 | None:intergenic |
| CAAGAGTTTGAGAAGGTAGT+AGG | 0.384655 | 8.4:-10791819 | MS.gene064135:CDS |
| CACAAAGCCGGTGGATGAAT+TGG | 0.389932 | 8.4:-10792045 | MS.gene064135:CDS |
| CAATTCATCCACCGGCTTTG+TGG | 0.397930 | 8.4:+10792046 | None:intergenic |
| GTCATCGTCATGGAGGTTTC+CGG | 0.398566 | 8.4:-10792770 | None:intergenic |
| TGTTGTTGGATGCAAGTGTA+TGG | 0.400360 | 8.4:-10791778 | MS.gene064135:CDS |
| GAAAGTAAGAGCAGGGGAGA+AGG | 0.401972 | 8.4:-10792204 | MS.gene064135:CDS |
| GAGAAGGTAGTAGGTGTTGA+AGG | 0.415252 | 8.4:-10791810 | MS.gene064135:CDS |
| TGAAGTTGACCCAAGAGATT+AGG | 0.430286 | 8.4:+10792491 | None:intergenic |
| TGATGTGAAGTAGAATCTTC+AGG | 0.436223 | 8.4:+10791990 | None:intergenic |
| GTTGATCTTAACATGGTTCA+GGG | 0.438643 | 8.4:-10791714 | MS.gene064135:CDS |
| GTGAGGGTGTCTATGGGGTC+TGG | 0.444353 | 8.4:-10792671 | MS.gene064135:CDS |
| CCAATGCAGAGAGGGTTACT+TGG | 0.447490 | 8.4:+10791669 | None:intergenic |
| AGGAACAACGCCATGAGAAC+GGG | 0.451237 | 8.4:+10792700 | None:intergenic |
| CGGAGAGTGAGGGTGTCTAT+GGG | 0.456153 | 8.4:-10792677 | MS.gene064135:CDS |
| TTCAATTCCAATTCATCCAC+CGG | 0.460806 | 8.4:+10792038 | None:intergenic |
| GAAGGTGAAGGTGTTGTTGT+TGG | 0.461516 | 8.4:-10791792 | MS.gene064135:CDS |
| GTTCTCATGGCGTTGTTCCT+CGG | 0.476868 | 8.4:-10792697 | MS.gene064135:CDS |
| CAACCTACATCTCCGGCGTT+GGG | 0.481801 | 8.4:-10792730 | MS.gene064135:CDS |
| GAGCTAGAGAAAGTAAGAGC+AGG | 0.491556 | 8.4:-10792212 | MS.gene064135:CDS |
| GGGGTCTGGTTTCCATGATG+AGG | 0.505395 | 8.4:-10792657 | MS.gene064135:CDS |
| ACAACCTACATCTCCGGCGT+TGG | 0.506506 | 8.4:-10792731 | MS.gene064135:CDS |
| CCAAGTAACCCTCTCTGCAT+TGG | 0.508307 | 8.4:-10791669 | MS.gene064135:CDS |
| AAAGAGGATTGAAGTTTGCA+TGG | 0.512458 | 8.4:-10791880 | MS.gene064135:CDS |
| GGGTCTGGTTTCCATGATGA+GGG | 0.513644 | 8.4:-10792656 | MS.gene064135:CDS |
| TGGAGTTGGTCTAGAGGATG+TGG | 0.516198 | 8.4:-10791649 | MS.gene064135:CDS |
| CCTAATCTACCTAATCTCTT+GGG | 0.516487 | 8.4:-10792500 | MS.gene064135:CDS |
| GGGACTCACACCCGTTCTCA+TGG | 0.519048 | 8.4:-10792710 | MS.gene064135:CDS |
| AGGGGAGGATTACAAAGATG+TGG | 0.525816 | 8.4:-10791604 | MS.gene064135:CDS |
| TGAAGTAGAATCTTCAGGTA+TGG | 0.531707 | 8.4:+10791995 | None:intergenic |
| AGTCCCAACGCCGGAGATGT+AGG | 0.532391 | 8.4:+10792727 | None:intergenic |
| AACCCTCTCTGCATTGGAGT+TGG | 0.545052 | 8.4:-10791663 | MS.gene064135:CDS |
| CTGCATTGGAGTTGGTCTAG+AGG | 0.545072 | 8.4:-10791655 | MS.gene064135:CDS |
| AGCTAGAGAAAGTAAGAGCA+GGG | 0.546581 | 8.4:-10792211 | MS.gene064135:CDS |
| GTTGTTGGATGCAAGTGTAT+GGG | 0.547984 | 8.4:-10791777 | MS.gene064135:CDS |
| ATAATGCATCTCTTGTTACT+GGG | 0.551376 | 8.4:-10791941 | MS.gene064135:CDS |
| GCGTTGTTCCTCGGAGAGTG+AGG | 0.551861 | 8.4:-10792688 | MS.gene064135:CDS |
| TTATCCCTGCAGCTCAAAAG+AGG | 0.567917 | 8.4:-10791896 | MS.gene064135:CDS |
| ACTGCACGTGACCCTCATCA+TGG | 0.571166 | 8.4:+10792645 | None:intergenic |
| AAGAGGATTGAAGTTTGCAT+GGG | 0.571804 | 8.4:-10791879 | MS.gene064135:CDS |
| GACCAACTCCAATGCAGAGA+GGG | 0.577245 | 8.4:+10791661 | None:intergenic |
| TTGTTGGATGCAAGTGTATG+GGG | 0.578412 | 8.4:-10791776 | MS.gene064135:CDS |
| ATCACTTGACTCAGATTCAG+AGG | 0.579827 | 8.4:+10792085 | None:intergenic |
| GAGGAACAACGCCATGAGAA+CGG | 0.580124 | 8.4:+10792699 | None:intergenic |
| TGTACGACGGAGAACGGTGC+CGG | 0.582122 | 8.4:+10792751 | None:intergenic |
| CGTTGTTCCTCGGAGAGTGA+GGG | 0.586366 | 8.4:-10792687 | MS.gene064135:CDS |
| TGTTGAGCAAACCCTAATTG+AGG | 0.593503 | 8.4:+10792524 | None:intergenic |
| ATGTGGATACCATTGTGGCT+AGG | 0.594294 | 8.4:-10791632 | MS.gene064135:CDS |
| GTAGTAGGTGTTGAAGGTGA+AGG | 0.594774 | 8.4:-10791804 | MS.gene064135:CDS |
| GGATTACAAAGATGTGGGTA+CGG | 0.595227 | 8.4:-10791598 | MS.gene064135:CDS |
| GAATTCTGTTGATCTTAACA+TGG | 0.597830 | 8.4:-10791721 | MS.gene064135:CDS |
| GGGGAGGATTACAAAGATGT+GGG | 0.600350 | 8.4:-10791603 | MS.gene064135:CDS |
| CGTCGTACAACCTACATCTC+CGG | 0.602217 | 8.4:-10792737 | MS.gene064135:CDS |
| GTAGGTTGTACGACGGAGAA+CGG | 0.604515 | 8.4:+10792745 | None:intergenic |
| TTACATGAATAGATGCAGGA+TGG | 0.624402 | 8.4:-10792254 | MS.gene064135:intron |
| GCTAGAGAAAGTAAGAGCAG+GGG | 0.626526 | 8.4:-10792210 | MS.gene064135:CDS |
| TCTTCAGGTATGGATAGCAT+AGG | 0.636532 | 8.4:+10792005 | None:intergenic |
| ATTGTTACAAGAGTTTGAGA+AGG | 0.637353 | 8.4:-10791826 | MS.gene064135:CDS |
| TTGTGATGTTGCCACAAAGC+CGG | 0.644781 | 8.4:-10792057 | MS.gene064135:CDS |
| TGATGTTGCCACAAAGCCGG+TGG | 0.654844 | 8.4:-10792054 | MS.gene064135:CDS |
| AGAGGATGTGGATACCATTG+TGG | 0.664578 | 8.4:-10791637 | MS.gene064135:CDS |
| GTTTAACAAAGAGACTAATG+TGG | 0.665239 | 8.4:-10791919 | MS.gene064135:CDS |
| ACGGGTGTGAGTCCCAACGC+CGG | 0.672451 | 8.4:+10792718 | None:intergenic |
| GGAGAGTGAGGGTGTCTATG+GGG | 0.673193 | 8.4:-10792676 | MS.gene064135:CDS |
| ATAGACACCCTCACTCTCCG+AGG | 0.695788 | 8.4:+10792680 | None:intergenic |
| AGACCAACTCCAATGCAGAG+AGG | 0.696753 | 8.4:+10791660 | None:intergenic |
| CATGAATAGATGCAGGATGG+TGG | 0.702277 | 8.4:-10792251 | MS.gene064135:intron |
| CGGAGATGTAGGTTGTACGA+CGG | 0.747412 | 8.4:+10792738 | None:intergenic |
| TCAACTTCACCAAAGCCTCG+CGG | 0.751601 | 8.4:-10792477 | MS.gene064135:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAATAAAAGAAAAAG+GGG | + | chr8.4:10791900-10791919 | None:intergenic | 10.0% |
| !! | ATAAAAATAAAAGAAAAAGG+GGG | + | chr8.4:10791899-10791918 | None:intergenic | 15.0% |
| !! | GAATTTGTGGTATAAATAAA+GGG | + | chr8.4:10792010-10792029 | None:intergenic | 20.0% |
| ! | AATGAAACAAGAGAAGAAAA+AGG | - | chr8.4:10792171-10792190 | MS.gene064135:CDS | 25.0% |
| ! | ATCATCATAATTGGAATTTG+TGG | + | chr8.4:10792023-10792042 | None:intergenic | 25.0% |
| ! | ATCATCATCATCATCATAAT+TGG | + | chr8.4:10792032-10792051 | None:intergenic | 25.0% |
| ! | ATCTTTAATTCAGAATCTGA+AGG | + | chr8.4:10791953-10791972 | None:intergenic | 25.0% |
| ! | GGAATTTGTGGTATAAATAA+AGG | + | chr8.4:10792011-10792030 | None:intergenic | 25.0% |
| ! | GTAACAAATGCAAAAAATCA+GGG | - | chr8.4:10792482-10792501 | MS.gene064135:CDS | 25.0% |
| ! | TAACAAATGCAAAAAATCAG+GGG | - | chr8.4:10792483-10792502 | MS.gene064135:CDS | 25.0% |
| !! | TTCATTACAAGTTTTCATCT+TGG | + | chr8.4:10792212-10792231 | None:intergenic | 25.0% |
| !!! | TTTTTTACATGAATAGATGC+AGG | - | chr8.4:10792081-10792100 | MS.gene064135:CDS | 25.0% |
| AATAATGCATCTCTTGTTAC+TGG | - | chr8.4:10792397-10792416 | MS.gene064135:intron | 30.0% | |
| ATAATGCATCTCTTGTTACT+GGG | - | chr8.4:10792398-10792417 | MS.gene064135:intron | 30.0% | |
| ATTGTTACAAGAGTTTGAGA+AGG | - | chr8.4:10792513-10792532 | MS.gene064135:CDS | 30.0% | |
| CTTCTGAATTACCTCAATTA+GGG | - | chr8.4:10791804-10791823 | MS.gene064135:CDS | 30.0% | |
| GAATTCTGAATTCTCACATT+AGG | + | chr8.4:10792604-10792623 | None:intergenic | 30.0% | |
| GAATTCTGTTGATCTTAACA+TGG | - | chr8.4:10792618-10792637 | MS.gene064135:CDS | 30.0% | |
| GGTAACAAATGCAAAAAATC+AGG | - | chr8.4:10792481-10792500 | MS.gene064135:CDS | 30.0% | |
| GTTTAACAAAGAGACTAATG+TGG | - | chr8.4:10792420-10792439 | MS.gene064135:intron | 30.0% | |
| TACTTCACATCATCATGTTA+TGG | - | chr8.4:10792360-10792379 | MS.gene064135:intron | 30.0% | |
| ! | ATTACAAGTTTTCATCTTGG+AGG | + | chr8.4:10792209-10792228 | None:intergenic | 30.0% |
| ! | TTACAAGTTTTCATCTTGGA+GGG | + | chr8.4:10792208-10792227 | None:intergenic | 30.0% |
| !!! | GTTTTTTCCTGTTTCTTGTT+GGG | - | chr8.4:10791977-10791996 | MS.gene064135:CDS | 30.0% |
| !!! | TGTTTTTTCCTGTTTCTTGT+TGG | - | chr8.4:10791976-10791995 | MS.gene064135:CDS | 30.0% |
| !!! | TTTTTTCCTGTTTCTTGTTG+GGG | - | chr8.4:10791978-10791997 | MS.gene064135:CDS | 30.0% |
| AAAGAGGATTGAAGTTTGCA+TGG | - | chr8.4:10792459-10792478 | MS.gene064135:intron | 35.0% | |
| AAGAGGATTGAAGTTTGCAT+GGG | - | chr8.4:10792460-10792479 | MS.gene064135:intron | 35.0% | |
| CCTAATCTACCTAATCTCTT+GGG | - | chr8.4:10791839-10791858 | MS.gene064135:CDS | 35.0% | |
| GCTTCTGAATTACCTCAATT+AGG | - | chr8.4:10791803-10791822 | MS.gene064135:CDS | 35.0% | |
| GTTGATCTTAACATGGTTCA+GGG | - | chr8.4:10792625-10792644 | MS.gene064135:CDS | 35.0% | |
| TCCTAATCTACCTAATCTCT+TGG | - | chr8.4:10791838-10791857 | MS.gene064135:CDS | 35.0% | |
| TGAAGTAGAATCTTCAGGTA+TGG | + | chr8.4:10792347-10792366 | None:intergenic | 35.0% | |
| TGATGTGAAGTAGAATCTTC+AGG | + | chr8.4:10792352-10792371 | None:intergenic | 35.0% | |
| TGTTGATCTTAACATGGTTC+AGG | - | chr8.4:10792624-10792643 | MS.gene064135:CDS | 35.0% | |
| TTACATGAATAGATGCAGGA+TGG | - | chr8.4:10792085-10792104 | MS.gene064135:CDS | 35.0% | |
| TTCAATTCCAATTCATCCAC+CGG | + | chr8.4:10792304-10792323 | None:intergenic | 35.0% | |
| !! | TTTTTCCTGTTTCTTGTTGG+GGG | - | chr8.4:10791979-10791998 | MS.gene064135:CDS | 35.0% |
| !!! | CTGTTTTTTTCTTCACGTCT+TGG | + | chr8.4:10791724-10791743 | None:intergenic | 35.0% |
| AGCTAGAGAAAGTAAGAGCA+GGG | - | chr8.4:10792128-10792147 | MS.gene064135:CDS | 40.0% | |
| ATCACTTGACTCAGATTCAG+AGG | + | chr8.4:10792257-10792276 | None:intergenic | 40.0% | |
| CAAGAGTTTGAGAAGGTAGT+AGG | - | chr8.4:10792520-10792539 | MS.gene064135:CDS | 40.0% | |
| CCCAAGAGATTAGGTAGATT+AGG | + | chr8.4:10791842-10791861 | None:intergenic | 40.0% | |
| GGATTACAAAGATGTGGGTA+CGG | - | chr8.4:10792741-10792760 | MS.gene064135:CDS | 40.0% | |
| GTTGTTGGATGCAAGTGTAT+GGG | - | chr8.4:10792562-10792581 | MS.gene064135:CDS | 40.0% | |
| TCTTCAGGTATGGATAGCAT+AGG | + | chr8.4:10792337-10792356 | None:intergenic | 40.0% | |
| TGAAGTTGACCCAAGAGATT+AGG | + | chr8.4:10791851-10791870 | None:intergenic | 40.0% | |
| TGTTGAGCAAACCCTAATTG+AGG | + | chr8.4:10791818-10791837 | None:intergenic | 40.0% | |
| TGTTGTTGGATGCAAGTGTA+TGG | - | chr8.4:10792561-10792580 | MS.gene064135:CDS | 40.0% | |
| TTGTTGGATGCAAGTGTATG+GGG | - | chr8.4:10792563-10792582 | MS.gene064135:CDS | 40.0% | |
| ! | ACCATTGTGGCTAGGTTTTT+AGG | - | chr8.4:10792715-10792734 | MS.gene064135:CDS | 40.0% |
| ! | CCATTGTGGCTAGGTTTTTA+GGG | - | chr8.4:10792716-10792735 | MS.gene064135:CDS | 40.0% |
| !! | CATTGTGGCTAGGTTTTTAG+GGG | - | chr8.4:10792717-10792736 | MS.gene064135:CDS | 40.0% |
| !! | TTTTCCTGTTTCTTGTTGGG+GGG | - | chr8.4:10791980-10791999 | MS.gene064135:CDS | 40.0% |
| AAAACCCCCCAACAAGAAAC+AGG | + | chr8.4:10791987-10792006 | None:intergenic | 45.0% | |
| AGAGGATGTGGATACCATTG+TGG | - | chr8.4:10792702-10792721 | MS.gene064135:CDS | 45.0% | |
| AGGGGAGGATTACAAAGATG+TGG | - | chr8.4:10792735-10792754 | MS.gene064135:CDS | 45.0% | |
| ATGTGGATACCATTGTGGCT+AGG | - | chr8.4:10792707-10792726 | MS.gene064135:CDS | 45.0% | |
| CATGAATAGATGCAGGATGG+TGG | - | chr8.4:10792088-10792107 | MS.gene064135:CDS | 45.0% | |
| CCCTAAAAACCTAGCCACAA+TGG | + | chr8.4:10792719-10792738 | None:intergenic | 45.0% | |
| GAGCTAGAGAAAGTAAGAGC+AGG | - | chr8.4:10792127-10792146 | MS.gene064135:CDS | 45.0% | |
| GCTAGAGAAAGTAAGAGCAG+GGG | - | chr8.4:10792129-10792148 | MS.gene064135:CDS | 45.0% | |
| GGGGAGGATTACAAAGATGT+GGG | - | chr8.4:10792736-10792755 | MS.gene064135:CDS | 45.0% | |
| TTATCCCTGCAGCTCAAAAG+AGG | - | chr8.4:10792443-10792462 | MS.gene064135:intron | 45.0% | |
| TTGTGATGTTGCCACAAAGC+CGG | - | chr8.4:10792282-10792301 | MS.gene064135:intron | 45.0% | |
| ! | CAATCCTCTTTTGAGCTGCA+GGG | + | chr8.4:10792450-10792469 | None:intergenic | 45.0% |
| ! | TCAATCCTCTTTTGAGCTGC+AGG | + | chr8.4:10792451-10792470 | None:intergenic | 45.0% |
| !! | AAAAAAGTACCGCGAGGCTT+TGG | + | chr8.4:10791874-10791893 | None:intergenic | 45.0% |
| !! | GAAGGTGAAGGTGTTGTTGT+TGG | - | chr8.4:10792547-10792566 | MS.gene064135:CDS | 45.0% |
| !! | GAGAAGGTAGTAGGTGTTGA+AGG | - | chr8.4:10792529-10792548 | MS.gene064135:CDS | 45.0% |
| !! | GTAGTAGGTGTTGAAGGTGA+AGG | - | chr8.4:10792535-10792554 | MS.gene064135:CDS | 45.0% |
| !! | ATAATAAAAATAAAAGAAAA+AGG | + | chr8.4:10791902-10791921 | None:intergenic | 5.0% |
| !! | TAATAAAAATAAAAGAAAAA+GGG | + | chr8.4:10791901-10791920 | None:intergenic | 5.0% |
| AACCCTCTCTGCATTGGAGT+TGG | - | chr8.4:10792676-10792695 | MS.gene064135:CDS | 50.0% | |
| AGACCAACTCCAATGCAGAG+AGG | + | chr8.4:10792682-10792701 | None:intergenic | 50.0% | |
| AGGAACAACGCCATGAGAAC+GGG | + | chr8.4:10791642-10791661 | None:intergenic | 50.0% | |
| CACAAAGCCGGTGGATGAAT+TGG | - | chr8.4:10792294-10792313 | MS.gene064135:intron | 50.0% | |
| CCAAGTAACCCTCTCTGCAT+TGG | - | chr8.4:10792670-10792689 | MS.gene064135:CDS | 50.0% | |
| CCAATGCAGAGAGGGTTACT+TGG | + | chr8.4:10792673-10792692 | None:intergenic | 50.0% | |
| CGGAGATGTAGGTTGTACGA+CGG | + | chr8.4:10791604-10791623 | None:intergenic | 50.0% | |
| CGTCGTACAACCTACATCTC+CGG | - | chr8.4:10791602-10791621 | MS.gene064135:CDS | 50.0% | |
| GAAAGTAAGAGCAGGGGAGA+AGG | - | chr8.4:10792135-10792154 | MS.gene064135:CDS | 50.0% | |
| GACCAACTCCAATGCAGAGA+GGG | + | chr8.4:10792681-10792700 | None:intergenic | 50.0% | |
| GAGGAACAACGCCATGAGAA+CGG | + | chr8.4:10791643-10791662 | None:intergenic | 50.0% | |
| GTAGGTTGTACGACGGAGAA+CGG | + | chr8.4:10791597-10791616 | None:intergenic | 50.0% | |
| GTTCTCATGGCGTTGTTCCT+CGG | - | chr8.4:10791642-10791661 | MS.gene064135:CDS | 50.0% | |
| TCAACTTCACCAAAGCCTCG+CGG | - | chr8.4:10791862-10791881 | MS.gene064135:CDS | 50.0% | |
| ! | CTGCATTGGAGTTGGTCTAG+AGG | - | chr8.4:10792684-10792703 | MS.gene064135:CDS | 50.0% |
| ! | GGGTCTGGTTTCCATGATGA+GGG | - | chr8.4:10791683-10791702 | MS.gene064135:CDS | 50.0% |
| ! | TGGAGTTGGTCTAGAGGATG+TGG | - | chr8.4:10792690-10792709 | MS.gene064135:CDS | 50.0% |
| !! | CAATTCATCCACCGGCTTTG+TGG | + | chr8.4:10792296-10792315 | None:intergenic | 50.0% |
| !! | TGTGGCTAGGTTTTTAGGGG+AGG | - | chr8.4:10792720-10792739 | MS.gene064135:CDS | 50.0% |
| ACAACCTACATCTCCGGCGT+TGG | - | chr8.4:10791608-10791627 | MS.gene064135:CDS | 55.0% | |
| ACTGCACGTGACCCTCATCA+TGG | + | chr8.4:10791697-10791716 | None:intergenic | 55.0% | |
| ATAGACACCCTCACTCTCCG+AGG | + | chr8.4:10791662-10791681 | None:intergenic | 55.0% | |
| CAACCTACATCTCCGGCGTT+GGG | - | chr8.4:10791609-10791628 | MS.gene064135:CDS | 55.0% | |
| CGTTGTTCCTCGGAGAGTGA+GGG | - | chr8.4:10791652-10791671 | MS.gene064135:CDS | 55.0% | |
| TGATGTTGCCACAAAGCCGG+TGG | - | chr8.4:10792285-10792304 | MS.gene064135:intron | 55.0% | |
| ! | GGGGTCTGGTTTCCATGATG+AGG | - | chr8.4:10791682-10791701 | MS.gene064135:CDS | 55.0% |
| !! | CGGAGAGTGAGGGTGTCTAT+GGG | - | chr8.4:10791662-10791681 | MS.gene064135:CDS | 55.0% |
| !! | GGAGAGTGAGGGTGTCTATG+GGG | - | chr8.4:10791663-10791682 | MS.gene064135:CDS | 55.0% |
| !! | GGGGTGAAAAAAGTACCGCG+AGG | + | chr8.4:10791880-10791899 | None:intergenic | 55.0% |
| !! | TCGGAGAGTGAGGGTGTCTA+TGG | - | chr8.4:10791661-10791680 | MS.gene064135:CDS | 55.0% |
| AGTCCCAACGCCGGAGATGT+AGG | + | chr8.4:10791615-10791634 | None:intergenic | 60.0% | |
| GCGTTGTTCCTCGGAGAGTG+AGG | - | chr8.4:10791651-10791670 | MS.gene064135:CDS | 60.0% | |
| GGGACTCACACCCGTTCTCA+TGG | - | chr8.4:10791629-10791648 | MS.gene064135:CDS | 60.0% | |
| TGTACGACGGAGAACGGTGC+CGG | + | chr8.4:10791591-10791610 | None:intergenic | 60.0% | |
| !! | GTGAGGGTGTCTATGGGGTC+TGG | - | chr8.4:10791668-10791687 | MS.gene064135:CDS | 60.0% |
| ACGGGTGTGAGTCCCAACGC+CGG | + | chr8.4:10791624-10791643 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 10791578 | 10792783 | 10791578 | ID=MS.gene064135 |
| chr8.4 | mRNA | 10791578 | 10792783 | 10791578 | ID=MS.gene064135.t1;Parent=MS.gene064135 |
| chr8.4 | exon | 10792478 | 10792783 | 10792478 | ID=MS.gene064135.t1.exon1;Parent=MS.gene064135.t1 |
| chr8.4 | CDS | 10792478 | 10792783 | 10792478 | ID=cds.MS.gene064135.t1;Parent=MS.gene064135.t1 |
| chr8.4 | exon | 10791578 | 10792264 | 10791578 | ID=MS.gene064135.t1.exon2;Parent=MS.gene064135.t1 |
| chr8.4 | CDS | 10791578 | 10792264 | 10791578 | ID=cds.MS.gene064135.t1;Parent=MS.gene064135.t1 |
| Gene Sequence |
| Protein sequence |
