AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06441


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06441.t1 MTR_3g095660 96.075 535 17 1 1 535 1 531 0.0 1061
MS.gene06441.t1 MTR_7g098720 87.302 126 16 0 1 126 1 126 4.62e-73 228
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06441.t1 AT5G39590 52.952 542 248 5 1 535 1 542 0.0 613

Find 132 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATTCGTTGCCACTGTTAT+TGG 0.166664 3.2:-79890145 MS.gene06441:CDS
CCACGGTCCGTTGCTAATTT+TGG 0.172838 3.2:-79888941 MS.gene06441:CDS
CTGATGAAAATGGAATAAAT+TGG 0.207316 3.2:-79890083 MS.gene06441:CDS
TTCTCTTGCTTTCAATTTGT+TGG 0.218628 3.2:-79889879 MS.gene06441:CDS
TTTCAAGACCTTCATTTGTT+AGG 0.229290 3.2:+79888854 None:intergenic
GAAGAGGCCTCAACAGATTT+TGG 0.275612 3.2:-79888981 MS.gene06441:CDS
GAAAATAAAGATATCTTCTA+TGG 0.277670 3.2:-79888835 MS.gene06441:CDS
GCTATAACAAGTGTTGTTCT+AGG 0.279979 3.2:-79890044 MS.gene06441:CDS
GCAATCAGGAAATTTGTTAT+AGG 0.290709 3.2:-79888880 MS.gene06441:CDS
GAAGTTGAAGTTTGGGGACT+TGG 0.298753 3.2:-79888048 MS.gene06441:CDS
TCTGGTTGTTTATATTCTTT+AGG 0.306058 3.2:-79888808 MS.gene06441:CDS
AGCAAATTTAGATGTTCATT+TGG 0.308600 3.2:-79889962 MS.gene06441:CDS
GAAATTGCCCACGCCCTTCC+TGG 0.313163 3.2:+79889347 None:intergenic
ACATTTCAGAAGTTGAAGTT+TGG 0.323569 3.2:-79888056 MS.gene06441:CDS
TGAAGGTGGGTTTGATGTTT+GGG 0.338894 3.2:-79889749 MS.gene06441:CDS
CATTTCAGAAGTTGAAGTTT+GGG 0.339247 3.2:-79888055 MS.gene06441:CDS
CCCAGTTTGCAAATGTCTTC+AGG 0.339582 3.2:+79887839 None:intergenic
CTGTGGGGAAGTTCGTTACT+TGG 0.349126 3.2:-79889693 MS.gene06441:CDS
ATAAATATTCTCTCATTTCC+CGG 0.349889 3.2:+79888551 None:intergenic
TCTCTTGCTTTCAATTTGTT+GGG 0.350083 3.2:-79889878 MS.gene06441:CDS
GAGAGACAAACCGATAAATA+AGG 0.353927 3.2:+79889249 None:intergenic
TCCAGCTCCACTGCTAATAA+AGG 0.356346 3.2:+79889283 None:intergenic
TATGGGAATTGCCTGTGTTT+CGG 0.357587 3.2:+79890233 None:intergenic
ACCTGAAGACATTTGCAAAC+TGG 0.358581 3.2:-79887840 MS.gene06441:CDS
TGTTTCGGAATCGGCGAACT+TGG 0.362495 3.2:+79890248 None:intergenic
AGCAAGAGAAACACATGCTT+GGG 0.367041 3.2:+79889892 None:intergenic
TCTTCCCTTCGAGCAGCATT+TGG 0.372230 3.2:+79887775 None:intergenic
ATGAAGGTGGGTTTGATGTT+TGG 0.373055 3.2:-79889750 MS.gene06441:CDS
TTCAAGACCTTCATTTGTTA+GGG 0.381195 3.2:+79888855 None:intergenic
CAACGAATCAGTTGTGTTCT+CGG 0.384710 3.2:+79890158 None:intergenic
CGTACCGGATTTGAGTCATT+TGG 0.393637 3.2:-79889809 MS.gene06441:CDS
CAATTTGTTGGGCTATGTCA+TGG 0.395450 3.2:-79889867 MS.gene06441:CDS
ACACCAGTTGGAGTTGCATT+TGG 0.395706 3.2:-79888581 MS.gene06441:CDS
TGAATGATAACCTTATTTAT+CGG 0.399164 3.2:-79889259 MS.gene06441:intron
AATTGCCTGTGTTTCGGAAT+CGG 0.400472 3.2:+79890239 None:intergenic
GCCTTTATTAGCAGTGGAGC+TGG 0.400846 3.2:-79889284 MS.gene06441:CDS
AACAGTTTCTGCCGAACAAC+AGG 0.402074 3.2:-79890328 MS.gene06441:CDS
CAACAGAATTGTACCTGATC+TGG 0.403003 3.2:+79888455 None:intergenic
GACTGGGTGGCAGGATGAAT+TGG 0.405881 3.2:-79889432 MS.gene06441:intron
TGATGAAAATGGAATAAATT+GGG 0.410341 3.2:-79890082 MS.gene06441:CDS
AAATACCGCTTTAAGCAATC+TGG 0.411669 3.2:+79889646 None:intergenic
CCACCAAATGCAACTCCAAC+TGG 0.433187 3.2:+79888578 None:intergenic
TGGTTCTCTTCTTCCAGATC+AGG 0.438842 3.2:-79888468 MS.gene06441:intron
CCTGAAGACATTTGCAAACT+GGG 0.439197 3.2:-79887839 MS.gene06441:CDS
GTTGCTGCAAGTTCTGGAAT+TGG 0.439736 3.2:-79888919 MS.gene06441:CDS
TTTCATCTATTTCCACCTAC+TGG 0.444921 3.2:-79888778 MS.gene06441:intron
ATCTGTTGAGGCCTCTTCCA+TGG 0.452687 3.2:+79888986 None:intergenic
GTAGAAATTTGAAAGGGAAA+AGG 0.456150 3.2:-79889840 MS.gene06441:CDS
GATATCTTCTATGGAACCTC+TGG 0.459326 3.2:-79888826 MS.gene06441:CDS
GTTGAAGTTTGGGGACTTGG+TGG 0.460472 3.2:-79888045 MS.gene06441:CDS
ATCTGATGATGTTGATTGTA+AGG 0.461071 3.2:-79889932 MS.gene06441:CDS
TACAGCCACTTGCATCCTAC+TGG 0.463901 3.2:-79888626 MS.gene06441:CDS
CCAGTTGGAGTTGCATTTGG+TGG 0.463915 3.2:-79888578 MS.gene06441:CDS
AAATTGCCCACGCCCTTCCT+GGG 0.465282 3.2:+79889348 None:intergenic
TCCACTGCTAATAAAGGCTC+TGG 0.471446 3.2:+79889289 None:intergenic
GTTGCATTTGGTGGAACTCC+GGG 0.477687 3.2:-79888569 MS.gene06441:CDS
AATTTGTTGGGCTATGTCAT+GGG 0.478841 3.2:-79889866 MS.gene06441:CDS
TCCAGAGCCTTTATTAGCAG+TGG 0.487708 3.2:-79889290 MS.gene06441:CDS
ACGAGGGAAATTCTGCAATC+AGG 0.488368 3.2:-79888894 MS.gene06441:CDS
CTATAACAAGTGTTGTTCTA+GGG 0.488555 3.2:-79890043 MS.gene06441:CDS
TGGGATTGTAGAAATTTGAA+AGG 0.499833 3.2:-79889847 MS.gene06441:CDS
GAAACACATGCTTGGGGAGA+AGG 0.499864 3.2:+79889899 None:intergenic
AATTGGGTTGAATTTGTGAA+AGG 0.500027 3.2:-79890066 MS.gene06441:CDS
TGCTTCAGTTTCGCTCGCGA+AGG 0.506425 3.2:-79890195 MS.gene06441:CDS
TTGAAGTTTGGGGACTTGGT+GGG 0.507974 3.2:-79888044 MS.gene06441:CDS
AGTTGCATTTGGTGGAACTC+CGG 0.508584 3.2:-79888570 MS.gene06441:CDS
GGGATTGTAGAAATTTGAAA+GGG 0.513613 3.2:-79889846 MS.gene06441:CDS
TTGAAGTATGGGAAGAGCTC+CGG 0.515043 3.2:+79890281 None:intergenic
TGCAAATAGCAGTAACTGAA+GGG 0.522985 3.2:-79889612 MS.gene06441:CDS
ATAGGTGCCCTAACAAATGA+AGG 0.525123 3.2:-79888862 MS.gene06441:CDS
AATCAGTTGTGTTCTCGGTA+TGG 0.525741 3.2:+79890163 None:intergenic
AAGCAAGAGAAACACATGCT+TGG 0.526907 3.2:+79889891 None:intergenic
TGTGGGGAAGTTCGTTACTT+GGG 0.531671 3.2:-79889692 MS.gene06441:CDS
ATGCAACTCCAACTGGTGTT+GGG 0.536297 3.2:+79888585 None:intergenic
TTCACCTGAGAAAATGATGA+TGG 0.537132 3.2:-79887812 MS.gene06441:CDS
ATGTTGATTGTAAGGCTAGC+GGG 0.543712 3.2:-79889924 MS.gene06441:CDS
GTCGACAGCATGGTGGCGAA+TGG 0.546868 3.2:+79888505 None:intergenic
GAAAACGTCGCAGCCTCCAC+CGG 0.548883 3.2:-79890300 MS.gene06441:CDS
AGTTCATCCACCCATGGAAG+AGG 0.549041 3.2:-79888997 MS.gene06441:CDS
TTGGAAGTTCAGATTCCTGT+GGG 0.550467 3.2:-79889709 MS.gene06441:CDS
TCTGTTGAGGCCTCTTCCAT+GGG 0.550666 3.2:+79888987 None:intergenic
AAAACCAAATGACTCAAATC+CGG 0.551319 3.2:+79889805 None:intergenic
TGTGTTGATGATAAAGATGA+AGG 0.555929 3.2:-79889766 MS.gene06441:CDS
CCACTGTTATTGGATCACTT+AGG 0.556371 3.2:-79890135 MS.gene06441:CDS
CTGATCCAAATGCTGCTCGA+AGG 0.557210 3.2:-79887780 MS.gene06441:CDS
TGATCCAAATGCTGCTCGAA+GGG 0.557214 3.2:-79887779 MS.gene06441:CDS
GTTGAGGCCTCTTCCATGGG+TGG 0.564789 3.2:+79888990 None:intergenic
AATGCAACTCCAACTGGTGT+TGG 0.566754 3.2:+79888584 None:intergenic
GAAAAGGAATTTGAGCGTAC+CGG 0.567650 3.2:-79889824 MS.gene06441:CDS
AAATGTGAGCTTCAGTAGGA+AGG 0.567848 3.2:+79888073 None:intergenic
ACTTGGTGGGAAAGCAGCAA+AGG 0.569837 3.2:-79888031 MS.gene06441:CDS
TATGGGAAGAGCTCCGGTGG+AGG 0.573617 3.2:+79890287 None:intergenic
AACTCCAACTGGTGTTGGGT+GGG 0.573638 3.2:+79888589 None:intergenic
GTTGATGATAAAGATGAAGG+TGG 0.575183 3.2:-79889763 MS.gene06441:CDS
CAATCCCACCCAACACCAGT+TGG 0.579168 3.2:-79888593 MS.gene06441:CDS
CTGCAAATAGCAGTAACTGA+AGG 0.581700 3.2:-79889613 MS.gene06441:CDS
TCTGAAATGTGAGCTTCAGT+AGG 0.589451 3.2:+79888069 None:intergenic
GTCTTCCAGATTGCTTAAAG+CGG 0.589611 3.2:-79889651 MS.gene06441:CDS
TTTAACCCCAGGAAGGGCGT+GGG 0.600418 3.2:-79889354 MS.gene06441:CDS
GATTGATATGCTCTACCAGT+AGG 0.602314 3.2:+79888611 None:intergenic
GGTGGAAATAGATGAAACAC+TGG 0.602986 3.2:+79888784 None:intergenic
AAGTATGGGAAGAGCTCCGG+TGG 0.604240 3.2:+79890284 None:intergenic
GATGGGAGCATCAACTTCGT+CGG 0.606622 3.2:-79890352 MS.gene06441:CDS
CTTGGAAGTTCAGATTCCTG+TGG 0.609976 3.2:-79889710 MS.gene06441:CDS
AGATGAAATTTCTACAACAG+AGG 0.611557 3.2:+79889394 None:intergenic
TACAACAGAGGAGGAATCAG+AGG 0.612942 3.2:+79889406 None:intergenic
ATTTCAGAAGTTGAAGTTTG+GGG 0.618427 3.2:-79888054 MS.gene06441:CDS
TGAAATTTCTACAACAGAGG+AGG 0.621735 3.2:+79889397 None:intergenic
AATTGCCCACGCCCTTCCTG+GGG 0.622329 3.2:+79889349 None:intergenic
CCAAAATTAGCAACGGACCG+TGG 0.626038 3.2:+79888941 None:intergenic
CAACTCCAACTGGTGTTGGG+TGG 0.627938 3.2:+79888588 None:intergenic
CTCTACCAGTAGGATGCAAG+TGG 0.628756 3.2:+79888621 None:intergenic
TTTAAGCAATCTGGAAGACA+TGG 0.630304 3.2:+79889655 None:intergenic
ATCTACAACATACCAGTAGG+TGG 0.634941 3.2:+79888766 None:intergenic
GTCGACAAAACTTATGAGAG+TGG 0.634999 3.2:-79888488 MS.gene06441:CDS
TGTTATAGTTCATCCACCCA+TGG 0.637411 3.2:-79889003 MS.gene06441:intron
TTGATGATAAAGATGAAGGT+GGG 0.637687 3.2:-79889762 MS.gene06441:CDS
GTTCGCCGATTCCGAAACAC+AGG 0.639152 3.2:-79890244 MS.gene06441:CDS
CAAGTAACGAACTTCCCCAC+AGG 0.644769 3.2:+79889694 None:intergenic
CATGAGACCAAAATCTGTTG+AGG 0.647781 3.2:+79888974 None:intergenic
TAAAGAATATAAACAACCAG+AGG 0.658602 3.2:+79888810 None:intergenic
GCAGCAACCAAAATTAGCAA+CGG 0.664965 3.2:+79888934 None:intergenic
GCAAATAGCAGTAACTGAAG+GGG 0.666138 3.2:-79889611 MS.gene06441:intron
CCTAAGTGATCCAATAACAG+TGG 0.673311 3.2:+79890135 None:intergenic
AAGTTCTGGAATTGGTCACG+AGG 0.684128 3.2:-79888911 MS.gene06441:CDS
TCTCATGTTGAAGGTTACCA+CGG 0.687708 3.2:-79888958 MS.gene06441:CDS
AGTTCTGGAATTGGTCACGA+GGG 0.699482 3.2:-79888910 MS.gene06441:CDS
GAAGACATTTGCAAACTGGG+AGG 0.701015 3.2:-79887836 MS.gene06441:CDS
GCAAGAGAAACACATGCTTG+GGG 0.703306 3.2:+79889893 None:intergenic
GTGGAAATAGATGAAACACT+GGG 0.704586 3.2:+79888785 None:intergenic
GATGTTGATTGTAAGGCTAG+CGG 0.732573 3.2:-79889925 MS.gene06441:CDS
TGGAAGTTCAGATTCCTGTG+GGG 0.754285 3.2:-79889708 MS.gene06441:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAGAATTATTATGAAAAA+TGG - chr3.2:79889788-79889807 MS.gene06441:CDS 15.0%
!! TTTATTTGAATAGAATTGAT+AGG - chr3.2:79889010-79889029 MS.gene06441:intron 15.0%
!! GAAAATAAAGATATCTTCTA+TGG - chr3.2:79889284-79889303 MS.gene06441:CDS 20.0%
!! GATTAAATAATTTCTTGACT+GGG - chr3.2:79888671-79888690 MS.gene06441:intron 20.0%
!! TGATGAAAATGGAATAAATT+GGG - chr3.2:79888037-79888056 MS.gene06441:CDS 20.0%
!! TGATTAAATAATTTCTTGAC+TGG - chr3.2:79888670-79888689 MS.gene06441:intron 20.0%
!! TTAATATTGTAACAGCTAAT+TGG + chr3.2:79890184-79890203 None:intergenic 20.0%
!!! ATATTTTTACAAGATTTACC+AGG - chr3.2:79889056-79889075 MS.gene06441:intron 20.0%
!!! CATTTTTGTAGATTTTCTAT+GGG + chr3.2:79887906-79887925 None:intergenic 20.0%
!!! TAAGTTGCTTATAAATGTTT+TGG - chr3.2:79888601-79888620 MS.gene06441:CDS 20.0%
!!! TCTCTTTTTAAATGTTGAAA+AGG - chr3.2:79888954-79888973 MS.gene06441:CDS 20.0%
!!! TGAATGATAACCTTATTTAT+CGG - chr3.2:79888860-79888879 MS.gene06441:CDS 20.0%
!!! TTTTTCATTTCTGATGAAAA+TGG - chr3.2:79888026-79888045 MS.gene06441:CDS 20.0%
! ACACTATTGTGATATAATGA+AGG + chr3.2:79889852-79889871 None:intergenic 25.0%
! AGATTCTATATGTTATCTGA+TGG - chr3.2:79889756-79889775 MS.gene06441:CDS 25.0%
! AGCAAATTTAGATGTTCATT+TGG - chr3.2:79888157-79888176 MS.gene06441:intron 25.0%
! ATAAATATTCTCTCATTTCC+CGG + chr3.2:79889571-79889590 None:intergenic 25.0%
! ATGCATGCATTAATCATATA+TGG + chr3.2:79889726-79889745 None:intergenic 25.0%
! CACTATTGTGATATAATGAA+GGG + chr3.2:79889851-79889870 None:intergenic 25.0%
! CTAACTGGTTAAAATTATTG+TGG - chr3.2:79889936-79889955 MS.gene06441:CDS 25.0%
! CTGATGAAAATGGAATAAAT+TGG - chr3.2:79888036-79888055 MS.gene06441:CDS 25.0%
! TAAAGAATATAAACAACCAG+AGG + chr3.2:79889312-79889331 None:intergenic 25.0%
! TCTGGTTGTTTATATTCTTT+AGG - chr3.2:79889311-79889330 MS.gene06441:CDS 25.0%
! TGGTAGAAAATAATGTCAAT+AGG + chr3.2:79889096-79889115 None:intergenic 25.0%
!! ATTTTAAATCATGTAGCCAT+TGG - chr3.2:79888547-79888566 MS.gene06441:CDS 25.0%
!! GCATTTTTGTAGATTTTCTA+TGG + chr3.2:79887907-79887926 None:intergenic 25.0%
!!! CTATTTTTGTTTAGTAGTCT+CGG - chr3.2:79888916-79888935 MS.gene06441:CDS 25.0%
AAAACCAAATGACTCAAATC+CGG + chr3.2:79888317-79888336 None:intergenic 30.0%
AAACCAACAAGTCAGAAATA+TGG + chr3.2:79890007-79890026 None:intergenic 30.0%
AATAAGTGCTTATCAACCAA+TGG + chr3.2:79888566-79888585 None:intergenic 30.0%
AATAGTAAACACCTAGTTTC+AGG + chr3.2:79889448-79889467 None:intergenic 30.0%
ACATTTCAGAAGTTGAAGTT+TGG - chr3.2:79890063-79890082 MS.gene06441:CDS 30.0%
AGATGAAATTTCTACAACAG+AGG + chr3.2:79888728-79888747 None:intergenic 30.0%
AGCAAAACAGAAACAACAAA+AGG + chr3.2:79889390-79889409 None:intergenic 30.0%
ATAGTAAACACCTAGTTTCA+GGG + chr3.2:79889447-79889466 None:intergenic 30.0%
ATTGTAACAGCTAATTGGAT+AGG + chr3.2:79890179-79890198 None:intergenic 30.0%
ATTTCAGAAGTTGAAGTTTG+GGG - chr3.2:79890065-79890084 MS.gene06441:CDS 30.0%
CATTTCAGAAGTTGAAGTTT+GGG - chr3.2:79890064-79890083 MS.gene06441:CDS 30.0%
GGGATTGTAGAAATTTGAAA+GGG - chr3.2:79888273-79888292 MS.gene06441:intron 30.0%
GTAGAAATTTGAAAGGGAAA+AGG - chr3.2:79888279-79888298 MS.gene06441:intron 30.0%
TAAATAATTTCTTGACTGGG+TGG - chr3.2:79888674-79888693 MS.gene06441:intron 30.0%
TATAACCATAAGCATTTCAG+TGG + chr3.2:79888641-79888660 None:intergenic 30.0%
TCATATATGGTTACAAGTTG+TGG + chr3.2:79889713-79889732 None:intergenic 30.0%
TGGGATTGTAGAAATTTGAA+AGG - chr3.2:79888272-79888291 MS.gene06441:intron 30.0%
TTCTCTTGCTTTCAATTTGT+TGG - chr3.2:79888240-79888259 MS.gene06441:intron 30.0%
TTGGTTTATCTTGTGTTTCA+GGG - chr3.2:79890020-79890039 MS.gene06441:CDS 30.0%
TTGTAACAGCTAATTGGATA+GGG + chr3.2:79890178-79890197 None:intergenic 30.0%
TTTCAAGACCTTCATTTGTT+AGG + chr3.2:79889268-79889287 None:intergenic 30.0%
! ATATCCATCATCATTTTCTC+AGG + chr3.2:79890314-79890333 None:intergenic 30.0%
! ATCTGATGATGTTGATTGTA+AGG - chr3.2:79888187-79888206 MS.gene06441:intron 30.0%
! CTATAACAAGTGTTGTTCTA+GGG - chr3.2:79888076-79888095 MS.gene06441:CDS 30.0%
! TCTCTTGCTTTCAATTTGTT+GGG - chr3.2:79888241-79888260 MS.gene06441:intron 30.0%
! TCTGTTTTGCTCTTTTTTTC+CGG - chr3.2:79889399-79889418 MS.gene06441:CDS 30.0%
! TTCAAGACCTTCATTTGTTA+GGG + chr3.2:79889267-79889286 None:intergenic 30.0%
! TTGATGATAAAGATGAAGGT+GGG - chr3.2:79888357-79888376 MS.gene06441:intron 30.0%
! TTTTTACAAGATTTACCAGG+CGG - chr3.2:79889059-79889078 MS.gene06441:intron 30.0%
!! AATTGGGTTGAATTTGTGAA+AGG - chr3.2:79888053-79888072 MS.gene06441:CDS 30.0%
!! GCAATCAGGAAATTTGTTAT+AGG - chr3.2:79889239-79889258 MS.gene06441:intron 30.0%
!! TGTGTTGATGATAAAGATGA+AGG - chr3.2:79888353-79888372 MS.gene06441:intron 30.0%
!!! GAGAAAGCTTTTTGAAGTAT+GGG + chr3.2:79887852-79887871 None:intergenic 30.0%
!!! TTTGAGTCATTTGGTTTTGT+CGG - chr3.2:79888319-79888338 MS.gene06441:intron 30.0%
AAAATTATTGTGGCCATGGA+CGG - chr3.2:79889946-79889965 MS.gene06441:CDS 35.0%
AAATATGGAGTCATGTAGAC+AGG + chr3.2:79889992-79890011 None:intergenic 35.0%
ACTAGGTGTTTACTATTGAC+AGG - chr3.2:79889451-79889470 MS.gene06441:intron 35.0%
GAGAGACAAACCGATAAATA+AGG + chr3.2:79888873-79888892 None:intergenic 35.0%
GGTTAAAATTATTGTGGCCA+TGG - chr3.2:79889942-79889961 MS.gene06441:CDS 35.0%
GTGGAAATAGATGAAACACT+GGG + chr3.2:79889337-79889356 None:intergenic 35.0%
GTGTTTACTATTGACAGGTA+AGG - chr3.2:79889456-79889475 MS.gene06441:intron 35.0%
TCTTACCACTGAAATGCTTA+TGG - chr3.2:79888633-79888652 MS.gene06441:CDS 35.0%
TGAAATTTCTACAACAGAGG+AGG + chr3.2:79888725-79888744 None:intergenic 35.0%
TGCAAATAGCAGTAACTGAA+GGG - chr3.2:79888507-79888526 MS.gene06441:CDS 35.0%
TTCACCTGAGAAAATGATGA+TGG - chr3.2:79890307-79890326 MS.gene06441:CDS 35.0%
TTTAAGCAATCTGGAAGACA+TGG + chr3.2:79888467-79888486 None:intergenic 35.0%
TTTCATCTATTTCCACCTAC+TGG - chr3.2:79889341-79889360 MS.gene06441:CDS 35.0%
! AAATACCGCTTTAAGCAATC+TGG + chr3.2:79888476-79888495 None:intergenic 35.0%
! ACTCCATATTTCTGACTTGT+TGG - chr3.2:79890001-79890020 MS.gene06441:CDS 35.0%
! GCTATAACAAGTGTTGTTCT+AGG - chr3.2:79888075-79888094 MS.gene06441:CDS 35.0%
! GTTGGTTTATCTTGTGTTTC+AGG - chr3.2:79890019-79890038 MS.gene06441:CDS 35.0%
!! AATTTGTTGGGCTATGTCAT+GGG - chr3.2:79888253-79888272 MS.gene06441:intron 35.0%
!! AGATTTTGGTCTCATGTTGA+AGG - chr3.2:79889152-79889171 MS.gene06441:intron 35.0%
!! GTTGATGATAAAGATGAAGG+TGG - chr3.2:79888356-79888375 MS.gene06441:intron 35.0%
!!! GGAGAAAGCTTTTTGAAGTA+TGG + chr3.2:79887853-79887872 None:intergenic 35.0%
!!! GTATGTGATATTTTAACCCC+AGG - chr3.2:79888754-79888773 MS.gene06441:intron 35.0%
!!! TGATATTTTAACCCCAGGAA+GGG - chr3.2:79888759-79888778 MS.gene06441:intron 35.0%
AAATGTGAGCTTCAGTAGGA+AGG + chr3.2:79890049-79890068 None:intergenic 40.0%
AACAGCTAATTGGATAGGGT+AGG + chr3.2:79890174-79890193 None:intergenic 40.0%
AAGCAAGAGAAACACATGCT+TGG + chr3.2:79888231-79888250 None:intergenic 40.0%
AATCAGTTGTGTTCTCGGTA+TGG + chr3.2:79887959-79887978 None:intergenic 40.0%
AATTGCCTGTGTTTCGGAAT+CGG + chr3.2:79887883-79887902 None:intergenic 40.0%
ACCTGAAGACATTTGCAAAC+TGG - chr3.2:79890279-79890298 MS.gene06441:CDS 40.0%
AGCAAGAGAAACACATGCTT+GGG + chr3.2:79888230-79888249 None:intergenic 40.0%
ATAGGTGCCCTAACAAATGA+AGG - chr3.2:79889257-79889276 MS.gene06441:intron 40.0%
ATCTACAACATACCAGTAGG+TGG + chr3.2:79889356-79889375 None:intergenic 40.0%
CAACAGAATTGTACCTGATC+TGG + chr3.2:79889667-79889686 None:intergenic 40.0%
CAACGAATCAGTTGTGTTCT+CGG + chr3.2:79887964-79887983 None:intergenic 40.0%
CAGACAATCATATCACAGTC+CGG + chr3.2:79889421-79889440 None:intergenic 40.0%
CATGAGACCAAAATCTGTTG+AGG + chr3.2:79889148-79889167 None:intergenic 40.0%
CCACTGTTATTGGATCACTT+AGG - chr3.2:79887984-79888003 MS.gene06441:CDS 40.0%
CCTAAGTGATCCAATAACAG+TGG + chr3.2:79887987-79888006 None:intergenic 40.0%
CCTGAAGACATTTGCAAACT+GGG - chr3.2:79890280-79890299 MS.gene06441:CDS 40.0%
CTGCAAATAGCAGTAACTGA+AGG - chr3.2:79888506-79888525 MS.gene06441:CDS 40.0%
GAAAAGGAATTTGAGCGTAC+CGG - chr3.2:79888295-79888314 MS.gene06441:intron 40.0%
GACATCTACAACATACCAGT+AGG + chr3.2:79889359-79889378 None:intergenic 40.0%
GATATCTTCTATGGAACCTC+TGG - chr3.2:79889293-79889312 MS.gene06441:CDS 40.0%
GATTGATATGCTCTACCAGT+AGG + chr3.2:79889511-79889530 None:intergenic 40.0%
GCAAATAGCAGTAACTGAAG+GGG - chr3.2:79888508-79888527 MS.gene06441:CDS 40.0%
GCAGCAACCAAAATTAGCAA+CGG + chr3.2:79889188-79889207 None:intergenic 40.0%
GGTGGAAATAGATGAAACAC+TGG + chr3.2:79889338-79889357 None:intergenic 40.0%
GTCGACAAAACTTATGAGAG+TGG - chr3.2:79889631-79889650 MS.gene06441:CDS 40.0%
GTCTTCCAGATTGCTTAAAG+CGG - chr3.2:79888468-79888487 MS.gene06441:intron 40.0%
TATGGGAATTGCCTGTGTTT+CGG + chr3.2:79887889-79887908 None:intergenic 40.0%
TCTCATGTTGAAGGTTACCA+CGG - chr3.2:79889161-79889180 MS.gene06441:intron 40.0%
TGATTCGTTGCCACTGTTAT+TGG - chr3.2:79887974-79887993 MS.gene06441:intron 40.0%
TGGGTGGATGAACTATAACA+TGG + chr3.2:79889116-79889135 None:intergenic 40.0%
TGTTATAGTTCATCCACCCA+TGG - chr3.2:79889116-79889135 MS.gene06441:intron 40.0%
TTGGAAGTTCAGATTCCTGT+GGG - chr3.2:79888410-79888429 MS.gene06441:intron 40.0%
! ATGAAGGTGGGTTTGATGTT+TGG - chr3.2:79888369-79888388 MS.gene06441:intron 40.0%
! ATGTTGATTGTAAGGCTAGC+GGG - chr3.2:79888195-79888214 MS.gene06441:intron 40.0%
! GATGTTGATTGTAAGGCTAG+CGG - chr3.2:79888194-79888213 MS.gene06441:intron 40.0%
! GTTTTCTGCTTCCTGTTGTT+CGG + chr3.2:79887805-79887824 None:intergenic 40.0%
! TCTGAAATGTGAGCTTCAGT+AGG + chr3.2:79890053-79890072 None:intergenic 40.0%
! TGAAGAAAGCGTACACTAAC+TGG - chr3.2:79889921-79889940 MS.gene06441:CDS 40.0%
! TGAAGGTGGGTTTGATGTTT+GGG - chr3.2:79888370-79888389 MS.gene06441:intron 40.0%
! TTGTCTGAAACCCTGAAACT+AGG - chr3.2:79889434-79889453 MS.gene06441:intron 40.0%
!! CAATTTGTTGGGCTATGTCA+TGG - chr3.2:79888252-79888271 MS.gene06441:intron 40.0%
!! CATAAGTTTTGTCGACAGCA+TGG + chr3.2:79889627-79889646 None:intergenic 40.0%
!! GGATTGTGATGTTTTGAGCT+TGG - chr3.2:79888391-79888410 MS.gene06441:intron 40.0%
!!! ATTTTGGTTGCTGCAAGTTC+TGG - chr3.2:79889194-79889213 MS.gene06441:intron 40.0%
!!! GTGATATTTTAACCCCAGGA+AGG - chr3.2:79888758-79888777 MS.gene06441:intron 40.0%
AACAGTTTCTGCCGAACAAC+AGG - chr3.2:79887791-79887810 MS.gene06441:CDS 45.0%
AATGCAACTCCAACTGGTGT+TGG + chr3.2:79889538-79889557 None:intergenic 45.0%
ACACCAGTTGGAGTTGCATT+TGG - chr3.2:79889538-79889557 MS.gene06441:intron 45.0%
ACGAGGGAAATTCTGCAATC+AGG - chr3.2:79889225-79889244 MS.gene06441:intron 45.0%
ATGCAACTCCAACTGGTGTT+GGG + chr3.2:79889537-79889556 None:intergenic 45.0%
CATTAGTCGTAATCCGTCCA+TGG + chr3.2:79889962-79889981 None:intergenic 45.0%
CCCAGTTTGCAAATGTCTTC+AGG + chr3.2:79890283-79890302 None:intergenic 45.0%
CGTACCGGATTTGAGTCATT+TGG - chr3.2:79888310-79888329 MS.gene06441:intron 45.0%
CTTGGAAGTTCAGATTCCTG+TGG - chr3.2:79888409-79888428 MS.gene06441:intron 45.0%
GAAGACATTTGCAAACTGGG+AGG - chr3.2:79890283-79890302 MS.gene06441:CDS 45.0%
GAAGTTGAAGTTTGGGGACT+TGG - chr3.2:79890071-79890090 MS.gene06441:CDS 45.0%
GCAAGAGAAACACATGCTTG+GGG + chr3.2:79888229-79888248 None:intergenic 45.0%
TAATTTCTTGACTGGGTGGC+AGG - chr3.2:79888678-79888697 MS.gene06441:intron 45.0%
TACAACAGAGGAGGAATCAG+AGG + chr3.2:79888716-79888735 None:intergenic 45.0%
TCCACTGCTAATAAAGGCTC+TGG + chr3.2:79888833-79888852 None:intergenic 45.0%
TCCAGAGCCTTTATTAGCAG+TGG - chr3.2:79888829-79888848 MS.gene06441:CDS 45.0%
TCCAGCTCCACTGCTAATAA+AGG + chr3.2:79888839-79888858 None:intergenic 45.0%
TGATCCAAATGCTGCTCGAA+GGG - chr3.2:79890340-79890359 MS.gene06441:CDS 45.0%
TGGAAGTTCAGATTCCTGTG+GGG - chr3.2:79888411-79888430 MS.gene06441:intron 45.0%
TGGTTCTCTTCTTCCAGATC+AGG - chr3.2:79889651-79889670 MS.gene06441:CDS 45.0%
TGTGGGGAAGTTCGTTACTT+GGG - chr3.2:79888427-79888446 MS.gene06441:intron 45.0%
TTGAAGTATGGGAAGAGCTC+CGG + chr3.2:79887841-79887860 None:intergenic 45.0%
! AGTTGCATTTGGTGGAACTC+CGG - chr3.2:79889549-79889568 MS.gene06441:intron 45.0%
! GAAGAGGCCTCAACAGATTT+TGG - chr3.2:79889138-79889157 MS.gene06441:intron 45.0%
! TAGGCATTATGTTTTCCGCC+TGG + chr3.2:79889077-79889096 None:intergenic 45.0%
! TTGAAGTTTGGGGACTTGGT+GGG - chr3.2:79890075-79890094 MS.gene06441:CDS 45.0%
!! AAGTTCTGGAATTGGTCACG+AGG - chr3.2:79889208-79889227 MS.gene06441:intron 45.0%
!! AAGTTTTGTCGACAGCATGG+TGG + chr3.2:79889624-79889643 None:intergenic 45.0%
!! AGTTCTGGAATTGGTCACGA+GGG - chr3.2:79889209-79889228 MS.gene06441:intron 45.0%
!! GTTGCTGCAAGTTCTGGAAT+TGG - chr3.2:79889200-79889219 MS.gene06441:intron 45.0%
!!! GAGTCATTTGGTTTTGTCGG+CGG - chr3.2:79888322-79888341 MS.gene06441:intron 45.0%
AGTTCATCCACCCATGGAAG+AGG - chr3.2:79889122-79889141 MS.gene06441:intron 50.0%
ATCTGTTGAGGCCTCTTCCA+TGG + chr3.2:79889136-79889155 None:intergenic 50.0%
CAAGTAACGAACTTCCCCAC+AGG + chr3.2:79888428-79888447 None:intergenic 50.0%
CCAAAATTAGCAACGGACCG+TGG + chr3.2:79889181-79889200 None:intergenic 50.0%
CCACCAAATGCAACTCCAAC+TGG + chr3.2:79889544-79889563 None:intergenic 50.0%
CCAGTTGGAGTTGCATTTGG+TGG - chr3.2:79889541-79889560 MS.gene06441:intron 50.0%
CTCTACCAGTAGGATGCAAG+TGG + chr3.2:79889501-79889520 None:intergenic 50.0%
CTGATCCAAATGCTGCTCGA+AGG - chr3.2:79890339-79890358 MS.gene06441:CDS 50.0%
CTGTGGGGAAGTTCGTTACT+TGG - chr3.2:79888426-79888445 MS.gene06441:intron 50.0%
GAAACACATGCTTGGGGAGA+AGG + chr3.2:79888223-79888242 None:intergenic 50.0%
GCCTTTATTAGCAGTGGAGC+TGG - chr3.2:79888835-79888854 MS.gene06441:CDS 50.0%
GTTGAAGTTTGGGGACTTGG+TGG - chr3.2:79890074-79890093 MS.gene06441:CDS 50.0%
TACAGCCACTTGCATCCTAC+TGG - chr3.2:79889493-79889512 MS.gene06441:intron 50.0%
TCTGTTGAGGCCTCTTCCAT+GGG + chr3.2:79889135-79889154 None:intergenic 50.0%
TCTTCCCTTCGAGCAGCATT+TGG + chr3.2:79890347-79890366 None:intergenic 50.0%
TGTTTCGGAATCGGCGAACT+TGG + chr3.2:79887874-79887893 None:intergenic 50.0%
! AACTCCAACTGGTGTTGGGT+GGG + chr3.2:79889533-79889552 None:intergenic 50.0%
! ACTTGGTGGGAAAGCAGCAA+AGG - chr3.2:79890088-79890107 MS.gene06441:CDS 50.0%
! CCACGGTCCGTTGCTAATTT+TGG - chr3.2:79889178-79889197 MS.gene06441:intron 50.0%
! GTTGCATTTGGTGGAACTCC+GGG - chr3.2:79889550-79889569 MS.gene06441:intron 50.0%
AAATTGCCCACGCCCTTCCT+GGG + chr3.2:79888774-79888793 None:intergenic 55.0%
AAGTATGGGAAGAGCTCCGG+TGG + chr3.2:79887838-79887857 None:intergenic 55.0%
CAATCCCACCCAACACCAGT+TGG - chr3.2:79889526-79889545 MS.gene06441:intron 55.0%
GACTGGGTGGCAGGATGAAT+TGG - chr3.2:79888687-79888706 MS.gene06441:intron 55.0%
TGCTTCAGTTTCGCTCGCGA+AGG - chr3.2:79887924-79887943 MS.gene06441:intron 55.0%
! CAACTCCAACTGGTGTTGGG+TGG + chr3.2:79889534-79889553 None:intergenic 55.0%
! TTTAACCCCAGGAAGGGCGT+GGG - chr3.2:79888765-79888784 MS.gene06441:intron 55.0%
! TTTTAACCCCAGGAAGGGCG+TGG - chr3.2:79888764-79888783 MS.gene06441:intron 55.0%
!! GTTCGCCGATTCCGAAACAC+AGG - chr3.2:79887875-79887894 MS.gene06441:intron 55.0%
AATTGCCCACGCCCTTCCTG+GGG + chr3.2:79888773-79888792 None:intergenic 60.0%
GAAAACGTCGCAGCCTCCAC+CGG - chr3.2:79887819-79887838 MS.gene06441:CDS 60.0%
GAAATTGCCCACGCCCTTCC+TGG + chr3.2:79888775-79888794 None:intergenic 60.0%
GTTGAGGCCTCTTCCATGGG+TGG + chr3.2:79889132-79889151 None:intergenic 60.0%
TATGGGAAGAGCTCCGGTGG+AGG + chr3.2:79887835-79887854 None:intergenic 60.0%
! GTCGACAGCATGGTGGCGAA+TGG + chr3.2:79889617-79889636 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 79887768 79890373 79887768 ID=MS.gene06441
chr3.2 mRNA 79887768 79890373 79887768 ID=MS.gene06441.t1;Parent=MS.gene06441
chr3.2 exon 79889612 79890373 79889612 ID=MS.gene06441.t1.exon1;Parent=MS.gene06441.t1
chr3.2 CDS 79889612 79890373 79889612 ID=cds.MS.gene06441.t1;Parent=MS.gene06441.t1
chr3.2 exon 79889260 79889441 79889260 ID=MS.gene06441.t1.exon2;Parent=MS.gene06441.t1
chr3.2 CDS 79889260 79889441 79889260 ID=cds.MS.gene06441.t1;Parent=MS.gene06441.t1
chr3.2 exon 79888779 79889017 79888779 ID=MS.gene06441.t1.exon3;Parent=MS.gene06441.t1
chr3.2 CDS 79888779 79889017 79888779 ID=cds.MS.gene06441.t1;Parent=MS.gene06441.t1
chr3.2 exon 79888469 79888668 79888469 ID=MS.gene06441.t1.exon4;Parent=MS.gene06441.t1
chr3.2 CDS 79888469 79888668 79888469 ID=cds.MS.gene06441.t1;Parent=MS.gene06441.t1
chr3.2 exon 79887975 79888100 79887975 ID=MS.gene06441.t1.exon5;Parent=MS.gene06441.t1
chr3.2 CDS 79887975 79888100 79887975 ID=cds.MS.gene06441.t1;Parent=MS.gene06441.t1
chr3.2 exon 79887768 79887866 79887768 ID=MS.gene06441.t1.exon6;Parent=MS.gene06441.t1
chr3.2 CDS 79887768 79887866 79887768 ID=cds.MS.gene06441.t1;Parent=MS.gene06441.t1
Gene Sequence

>MS.gene06441

ATGGGAGCATCAACTTCGTCGGAAACAGTTTCTGCCGAACAACAGGAAGCAGAAAACGTCGCAGCCTCCACCGGAGCTCTTCCCATACTTCAAAAAGCTTTCTCCAAGTTCGCCGATTCCGAAACACAGGCAATTCCCATAGAAAATCTACAAAAATGCTTCAGTTTCGCTCGCGAAGGTCGAAATTACCATACCGAGAACACAACTGATTCGTTGCCACTGTTATTGGATCACTTAGGTTCATCTTTAGTTGATCAATTTTTCATTTCTGATGAAAATGGAATAAATTGGGTTGAATTTGTGAAAGGCTATAACAAGTGTTGTTCTAGGGTTTCTGCATCGATTTTTCTAAACAAATTTATTAGACTATTTGTTGATTTTACAAAAAAAGCAAATTTAGATGTTCATTTGGAATTTGAATCTGATGATGTTGATTGTAAGGCTAGCGGGTACCTTCTCCCCAAGCATGTGTTTCTCTTGCTTTCAATTTGTTGGGCTATGTCATGGGATTGTAGAAATTTGAAAGGGAAAAGGAATTTGAGCGTACCGGATTTGAGTCATTTGGTTTTGTCGGCGGTTACGTCGTGTGTTGATGATAAAGATGAAGGTGGGTTTGATGTTTGGGATTGTGATGTTTTGAGCTTGGAAGTTCAGATTCCTGTGGGGAAGTTCGTTACTTGGGTTATGAGTACAGTGCCATGTCTTCCAGATTGCTTAAAGCGGTATTTTCATGCAAGACTGCAAATAGCAGTAACTGAAGGGGTAATCTATGTAATTATATTTTAAATCATGTAGCCATTGGTTGATAAGCACTTATTAAATAAGCACTTAATTAAGTTGCTTATAAATGTTTTGGCATGATACATCTTACCACTGAAATGCTTATGGTTATACTCTAGTACTGATTAAATAATTTCTTGACTGGGTGGCAGGATGAATTGGCATCCTCTGATTCCTCCTCTGTTGTAGAAATTTCATCTACAACTGTATGTGATATTTTAACCCCAGGAAGGGCGTGGGCAATTTCTATCACACAGAGAAATACAGTAAATGAAGAGATTTCCAGAGCCTTTATTAGCAGTGGAGCTGGATTGAATGATAACCTTATTTATCGGTTTGTCTCTCTGATCTTCAATCATAGTTTCATGCTATTTTTGTTTAGTAGTCTCGGTTACTTGTCAGATTTTCTCTTTTTAAATGTTGAAAAGGCTACACTTAATATGATGTTTTTCTGATTTACTCTTTATTTGAATAGAATTGATAGGTTGTTTGTTCTGCGACATTTATAATATTTTTACAAGATTTACCAGGCGGAAAACATAATGCCTATTGACATTATTTTCTACCATGTTATAGTTCATCCACCCATGGAAGAGGCCTCAACAGATTTTGGTCTCATGTTGAAGGTTACCACGGTCCGTTGCTAATTTTGGTTGCTGCAAGTTCTGGAATTGGTCACGAGGGAAATTCTGCAATCAGGAAATTTGTTATAGGTGCCCTAACAAATGAAGGTCTTGAAAATAAAGATATCTTCTATGGAACCTCTGGTTGTTTATATTCTTTAGGCCCAGTGTTTCATCTATTTCCACCTACTGGTATGTTGTAGATGTCACAGTATTCCTTTTGTTGTTTCTGTTTTGCTCTTTTTTTCCGGACTGTGATATGATTGTCTGAAACCCTGAAACTAGGTGTTTACTATTGACAGGTAAGGAAAAAAATTTTGTTTACAGCCACTTGCATCCTACTGGTAGAGCATATCAATCCCACCCAACACCAGTTGGAGTTGCATTTGGTGGAACTCCGGGAAATGAGAGAATATTTATAGATGAAGATTTTTCAAAAGTGACCATTCGCCACCATGCTGTCGACAAAACTTATGAGAGTGGTTCTCTTCTTCCAGATCAGGTACAATTCTGTTGTTGAAAGTACTTACTGCGTGAATCCACAACTTGTAACCATATATGATTAATGCATGCATCTGAAATTGCAGATTCTATATGTTATCTGATGGAAGTCTTTTTTCAGAATTATTATGAAAAATGGATAACAATCTAGTGAACTCTTTCATGCTGTAAAGTTTCCCTTCATTATATCACAATAGTGTTTTTATTATCAGCTGATATCAATTTTGTAAGAGACATGAGTATACATTATGAAGAAAGCGTACACTAACTGGTTAAAATTATTGTGGCCATGGACGGATTACGACTAATGAACTGCACCTGTCTACATGACTCCATATTTCTGACTTGTTGGTTTATCTTGTGTTTCAGGGTTTCCTTCCTACTGAAGCTCACATTTCAGAAGTTGAAGTTTGGGGACTTGGTGGGAAAGCAGCAAAGGAAGTACAAAACTCATATAAGAAGAGAGAAGAACTTTTCACTGATCAAAGACGAAAAGTATCCTACCCTATCCAATTAGCTGTTACAATATTAATTAATTAAATTTTGTTAAATCAAAGAACACTAGTAACATACATAACATTGTATTATCATGCTATTTTGTAGATTGACCTGAAGACATTTGCAAACTGGGAGGATTCACCTGAGAAAATGATGATGGATATGATGTCTGATCCAAATGCTGCTCGAAGGGAAGATCGTTGA

Protein sequence

>MS.gene06441.t1

MGASTSSETVSAEQQEAENVAASTGALPILQKAFSKFADSETQAIPIENLQKCFSFAREGRNYHTENTTDSLPLLLDHLGSSLVDQFFISDENGINWVEFVKGYNKCCSRVSASIFLNKFIRLFVDFTKKANLDVHLEFESDDVDCKASGYLLPKHVFLLLSICWAMSWDCRNLKGKRNLSVPDLSHLVLSAVTSCVDDKDEGGFDVWDCDVLSLEVQIPVGKFVTWVMSTVPCLPDCLKRYFHARLQIAVTEGDELASSDSSSVVEISSTTVCDILTPGRAWAISITQRNTVNEEISRAFISSGAGLNDNLIYRSSTHGRGLNRFWSHVEGYHGPLLILVAASSGIGHEGNSAIRKFVIGALTNEGLENKDIFYGTSGCLYSLGPVFHLFPPTGKEKNFVYSHLHPTGRAYQSHPTPVGVAFGGTPGNERIFIDEDFSKVTIRHHAVDKTYESGSLLPDQGFLPTEAHISEVEVWGLGGKAAKEVQNSYKKREELFTDQRRKIDLKTFANWEDSPEKMMMDMMSDPNAARREDR