AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene064749

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064749.t1 MTR_3g113750 99.270 274 2 0 1 274 1 274 0.0 563
MS.gene064749.t1 MTR_1g107520 87.879 165 16 1 1 165 1 161 3.02e-102 296
MS.gene064749.t1 MTR_3g114210 74.324 148 29 3 31 169 1 148 6.69e-65 200
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064749.t1 AT4G31790 79.197 274 56 1 1 273 1 274 3.42e-166 461
MS.gene064749.t1 AT4G31790 79.197 274 56 1 1 273 1 274 3.42e-166 461

Find 60 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTCAACAAAATCGAAATT+TGG 0.119650 3.4:-97803479 MS.gene064749:CDS
CACAGCCATTGAGCAGTTAT+TGG 0.191629 3.4:-97802380 MS.gene064749:CDS
ATCCAACATTTCTTCCTCTA+AGG 0.206456 3.4:+97801314 None:intergenic
CTTCACACACTTTGCTTGTT+AGG 0.206959 3.4:-97803454 MS.gene064749:intron
TTGATATGGTTACAGATATT+CGG 0.268916 3.4:-97802683 MS.gene064749:intron
CATGCTGCTTTCCTTGTTGT+TGG 0.296764 3.4:-97803793 MS.gene064749:CDS
CTTGTTGTTGGTGATCCTTT+TGG 0.312531 3.4:-97803781 MS.gene064749:CDS
ATGTTATACATAATCGGTTT+AGG 0.334885 3.4:-97804033 MS.gene064749:CDS
ATTCAACAAAATCGAAATTT+GGG 0.350651 3.4:-97803478 MS.gene064749:CDS
TGTGTTTATAGTCATATATC+TGG 0.356508 3.4:+97802399 None:intergenic
TACATAATCGGTTTAGGCTT+GGG 0.356873 3.4:-97804027 MS.gene064749:CDS
CAACTACAATTGATTGACTT+TGG 0.358077 3.4:-97801378 MS.gene064749:CDS
TGATATGGTTACAGATATTC+GGG 0.366444 3.4:-97802682 MS.gene064749:intron
TACACTTCCCTTCTCTCCTT+CGG 0.369995 3.4:-97803934 MS.gene064749:CDS
TTGCATTGCCTAGTAATAAC+AGG 0.375150 3.4:-97801348 MS.gene064749:CDS
TCTCTGTCAGCAAGAGTAAT+GGG 0.388366 3.4:+97803865 None:intergenic
GGGTCTTGCCTGTTATTACT+AGG 0.419136 3.4:+97801340 None:intergenic
TACTCTTGCTGACAGAGAAA+TGG 0.420268 3.4:-97803860 MS.gene064749:CDS
TGTGTTGGGCTTGCTCGTCT+TGG 0.428282 3.4:-97801438 MS.gene064749:CDS
GCATCTGTGATGAATGCAAT+TGG 0.434280 3.4:-97803592 MS.gene064749:CDS
AGCATGAGAAAGTTGAGCTT+GGG 0.452656 3.4:+97803810 None:intergenic
TCACAAGCACGTGAAGAATC+TGG 0.453700 3.4:-97802352 MS.gene064749:intron
GGTTTGCAGCTATATCGTTA+TGG 0.461327 3.4:-97803562 MS.gene064749:CDS
CAGAAGATACCGAGTGTGTT+GGG 0.467905 3.4:-97801452 MS.gene064749:CDS
CAATTCCCATCTTCTTAGCT+CGG 0.470476 3.4:+97803635 None:intergenic
ATACATAATCGGTTTAGGCT+TGG 0.473388 3.4:-97804028 MS.gene064749:CDS
GAAGATCAAATAATAGTAGC+TGG 0.474742 3.4:-97801411 MS.gene064749:CDS
CGACACTTGAATCTTTGTGC+AGG 0.475224 3.4:-97802650 MS.gene064749:intron
TTCTCTGTCAGCAAGAGTAA+TGG 0.482945 3.4:+97803864 None:intergenic
AGGCAAGACCCATCCCTTAG+AGG 0.485446 3.4:-97801328 MS.gene064749:CDS
CAGCATGAGAAAGTTGAGCT+TGG 0.490714 3.4:+97803809 None:intergenic
TCCCTTAGAGGAAGAAATGT+TGG 0.493151 3.4:-97801316 MS.gene064749:CDS
AAGAGAGGCCGAAGGAGAGA+AGG 0.500937 3.4:+97803926 None:intergenic
TCCAACATTTCTTCCTCTAA+GGG 0.501972 3.4:+97801315 None:intergenic
ACATTTCTTCCTCTAAGGGA+TGG 0.508262 3.4:+97801319 None:intergenic
AGAGTAGGTGCGTACCCAAA+AGG 0.522237 3.4:+97803766 None:intergenic
CATTTCTTCCTCTAAGGGAT+GGG 0.530511 3.4:+97801320 None:intergenic
ACAGAAGATACCGAGTGTGT+TGG 0.558228 3.4:-97801453 MS.gene064749:CDS
TGTTGTCCGAGCTAAGAAGA+TGG 0.559050 3.4:-97803641 MS.gene064749:CDS
TGGAGAGGCCGTGTGAAGAG+AGG 0.560627 3.4:+97803911 None:intergenic
AAAATGCGACAAGGTTTACA+TGG 0.566134 3.4:-97803962 MS.gene064749:CDS
AGAGAGGCCGAAGGAGAGAA+GGG 0.567567 3.4:+97803927 None:intergenic
GTGTTTATAGTCATATATCT+GGG 0.568517 3.4:+97802400 None:intergenic
TACCTTTCTTTACTGAGACG+TGG 0.569946 3.4:-97803525 MS.gene064749:CDS
AATCTCCAATAACTGCTCAA+TGG 0.570091 3.4:+97802375 None:intergenic
CTCCACGTCTCAGTAAAGAA+AGG 0.574685 3.4:+97803523 None:intergenic
CATCTGTGATGAATGCAATT+GGG 0.578682 3.4:-97803591 MS.gene064749:CDS
GAGCAAGATATCACACTCAA+AGG 0.583825 3.4:-97804000 MS.gene064749:CDS
GGTTACAGATATTCGGGTGA+AGG 0.584730 3.4:-97802676 MS.gene064749:intron
GTTGTCCGAGCTAAGAAGAT+GGG 0.586718 3.4:-97803640 MS.gene064749:CDS
ACACTCGGTATCTTCTGTGT+AGG 0.591347 3.4:+97801458 None:intergenic
ATGAATGCAATTGGGATCTG+TGG 0.605367 3.4:-97803583 MS.gene064749:CDS
ACGAGCAAGCCCAACACACT+CGG 0.610208 3.4:+97801443 None:intergenic
CTGCACAAAGATTCAAGTGT+CGG 0.611741 3.4:+97802651 None:intergenic
CAAAAGGATCACCAACAACA+AGG 0.612297 3.4:+97803782 None:intergenic
TCCTTCGGCCTCTCTTCACA+CGG 0.614104 3.4:-97803919 MS.gene064749:CDS
TCTTCTTAGCTCGGACAACA+AGG 0.625706 3.4:+97803644 None:intergenic
GTTATTACTAGGCAATGCAA+AGG 0.632024 3.4:+97801351 None:intergenic
GCCGTGTGAAGAGAGGCCGA+AGG 0.658038 3.4:+97803918 None:intergenic
TTTATAGTCATATATCTGGG+AGG 0.687291 3.4:+97802403 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAAAA+TGG - chr3.4:97802098-97802117 MS.gene064749:intron 0.0%
!! AATCGCTTAAAATATTTATA+TGG + chr3.4:97802516-97802535 None:intergenic 15.0%
!! GATATTTACATGATATTATT+AGG + chr3.4:97802479-97802498 None:intergenic 15.0%
!! TCTTATATTATTATCTGATT+AGG - chr3.4:97803744-97803763 MS.gene064749:intron 15.0%
!!! ATATAATTTTCACTTTGATA+TGG - chr3.4:97802629-97802648 MS.gene064749:intron 15.0%
!! AAAAACACCAAAATCAATAA+TGG + chr3.4:97801639-97801658 None:intergenic 20.0%
!! ACAAGAAAATACATTGAATT+TGG - chr3.4:97802371-97802390 MS.gene064749:CDS 20.0%
!! ATAAATGAAAATCAGTGAAT+AGG + chr3.4:97802861-97802880 None:intergenic 20.0%
!! ATTCAACAAAATCGAAATTT+GGG - chr3.4:97801848-97801867 MS.gene064749:intron 20.0%
!! TTGATTCATTTCTATATTTG+TGG - chr3.4:97803676-97803695 MS.gene064749:intron 20.0%
!!! TCATGTAAATATCTAAAACA+TGG - chr3.4:97802486-97802505 MS.gene064749:intron 20.0%
!!! TGAATTTTGGTCTTATTAAA+TGG - chr3.4:97802816-97802835 MS.gene064749:intron 20.0%
! AAACAGCCACAAATTATAAA+GGG + chr3.4:97803290-97803309 None:intergenic 25.0%
! ACCTAATCAATGGAAAATAA+AGG + chr3.4:97802719-97802738 None:intergenic 25.0%
! CTATTATGTTAGCAATATCA+TGG - chr3.4:97802790-97802809 MS.gene064749:intron 25.0%
! CTTAAGCTATCATTAAGTAT+TGG - chr3.4:97802744-97802763 MS.gene064749:intron 25.0%
! GAATAATGATAGTTAGTAGT+TGG - chr3.4:97801938-97801957 MS.gene064749:intron 25.0%
! GAATAATGATAGTTAGTAGT+TGG + chr3.4:97801957-97801938 None:intergenic 25.0%
! GATTCAACAAAATCGAAATT+TGG - chr3.4:97801847-97801866 MS.gene064749:intron 25.0%
! GCAAAACAATAAAATTGCTT+AGG + chr3.4:97801614-97801633 None:intergenic 25.0%
! GTGTTTATAGTCATATATCT+GGG + chr3.4:97802929-97802948 None:intergenic 25.0%
! TAAACAGCCACAAATTATAA+AGG + chr3.4:97803291-97803310 None:intergenic 25.0%
! TATAAAGGGTAAAGGAATTT+GGG + chr3.4:97803276-97803295 None:intergenic 25.0%
! TATAGATTAGATATGAGAGT+AGG + chr3.4:97801578-97801597 None:intergenic 25.0%
! TGTGTTTATAGTCATATATC+TGG + chr3.4:97802930-97802949 None:intergenic 25.0%
! TTAAGAAACTACCTAATCAA+TGG + chr3.4:97802729-97802748 None:intergenic 25.0%
! TTATAAAGGGTAAAGGAATT+TGG + chr3.4:97803277-97803296 None:intergenic 25.0%
! TTGATATGGTTACAGATATT+CGG - chr3.4:97802643-97802662 MS.gene064749:intron 25.0%
!! ATAATCTTTGAGAATGAGAA+TGG + chr3.4:97803485-97803504 None:intergenic 25.0%
!! ATGTTATACATAATCGGTTT+AGG - chr3.4:97801293-97801312 MS.gene064749:CDS 25.0%
!! TAATCTTTGAGAATGAGAAT+GGG + chr3.4:97803484-97803503 None:intergenic 25.0%
!! TGATTAGGAAACAATTTTCT+CGG - chr3.4:97803759-97803778 MS.gene064749:intron 25.0%
!! TTGCTTCTTTTATTCCATTA+GGG + chr3.4:97803193-97803212 None:intergenic 25.0%
!! TTTGCTTCTTTTATTCCATT+AGG + chr3.4:97803194-97803213 None:intergenic 25.0%
!!! AATATCATGGCATTGAATTT+TGG - chr3.4:97802803-97802822 MS.gene064749:intron 25.0%
!!! GTTAGTGGATTCATATAAAT+AGG - chr3.4:97802028-97802047 MS.gene064749:intron 25.0%
!!! GTTAGTGGATTCATATAAAT+AGG + chr3.4:97802047-97802028 None:intergenic 25.0%
!!! TCCTTTATTTTCCATTGATT+AGG - chr3.4:97802715-97802734 MS.gene064749:intron 25.0%
!!! TTTGCTTCCATTATTGATTT+TGG - chr3.4:97801629-97801648 MS.gene064749:intron 25.0%
AACAATGAAAGTTTCCCTAA+TGG - chr3.4:97803176-97803195 MS.gene064749:intron 30.0%
AAGTGTTAGTTACTAGTTAG+TGG - chr3.4:97802013-97802032 MS.gene064749:intron 30.0%
AGCTTATTAGAGTAAGTTTC+TGG + chr3.4:97803122-97803141 None:intergenic 30.0%
ATGGAATAAAAGAAGCAAAC+TGG - chr3.4:97803195-97803214 MS.gene064749:intron 30.0%
CCACAAATTATAAAGGGTAA+AGG + chr3.4:97803284-97803303 None:intergenic 30.0%
CCTTTACCCTTTATAATTTG+TGG - chr3.4:97803281-97803300 MS.gene064749:intron 30.0%
GAAGATCAAATAATAGTAGC+TGG - chr3.4:97803915-97803934 MS.gene064749:CDS 30.0%
TGATATGGTTACAGATATTC+GGG - chr3.4:97802644-97802663 MS.gene064749:intron 30.0%
TTTATAGTCATATATCTGGG+AGG + chr3.4:97802926-97802945 None:intergenic 30.0%
! AGAATGGGATCACATTTTAT+GGG + chr3.4:97803469-97803488 None:intergenic 30.0%
! ATCTTTTCATAGAAGCTATC+AGG + chr3.4:97801830-97801849 None:intergenic 30.0%
! CAACTACAATTGATTGACTT+TGG - chr3.4:97803948-97803967 MS.gene064749:CDS 30.0%
! GTCAAAGCACTTATATATCT+AGG - chr3.4:97803336-97803355 MS.gene064749:intron 30.0%
!! AATATTTTAAGCGATTGTGC+TGG - chr3.4:97802520-97802539 MS.gene064749:intron 30.0%
!! CTTCCTCTAAAATGAACAAA+CGG + chr3.4:97802890-97802909 None:intergenic 30.0%
!! TTGAGTTGATCAATACAAAC+AGG + chr3.4:97802415-97802434 None:intergenic 30.0%
!!! TGATTTTGGTGTTTTTCACA+GGG - chr3.4:97801643-97801662 MS.gene064749:intron 30.0%
!!! TTGATTTTGGTGTTTTTCAC+AGG - chr3.4:97801642-97801661 MS.gene064749:intron 30.0%
AAAATGCGACAAGGTTTACA+TGG - chr3.4:97801364-97801383 MS.gene064749:CDS 35.0%
AAGTGTTAGTTGCTAGTTAG+TGG + chr3.4:97802222-97802241 None:intergenic 35.0%
AATCTCCAATAACTGCTCAA+TGG + chr3.4:97802954-97802973 None:intergenic 35.0%
ACATTTGCTTACTTCCTCTT+TGG - chr3.4:97803373-97803392 MS.gene064749:intron 35.0%
ATCCAACATTTCTTCCTCTA+AGG + chr3.4:97804015-97804034 None:intergenic 35.0%
CATCTGTGATGAATGCAATT+GGG - chr3.4:97801735-97801754 MS.gene064749:intron 35.0%
GGATACTACTTTCAGTTTGA+TGG + chr3.4:97803833-97803852 None:intergenic 35.0%
GTTATTACTAGGCAATGCAA+AGG + chr3.4:97803978-97803997 None:intergenic 35.0%
TCCAACATTTCTTCCTCTAA+GGG + chr3.4:97804014-97804033 None:intergenic 35.0%
TCCAACCTCGAAAAACTATA+CGG - chr3.4:97801434-97801453 MS.gene064749:CDS 35.0%
TGTAAAAGCGACATTGATAC+AGG + chr3.4:97802354-97802373 None:intergenic 35.0%
TTGCATTGCCTAGTAATAAC+AGG - chr3.4:97803978-97803997 MS.gene064749:CDS 35.0%
! ATACATAATCGGTTTAGGCT+TGG - chr3.4:97801298-97801317 MS.gene064749:CDS 35.0%
! GAGAATGGGATCACATTTTA+TGG + chr3.4:97803470-97803489 None:intergenic 35.0%
! GTTTACCGTATAGTTTTTCG+AGG + chr3.4:97801442-97801461 None:intergenic 35.0%
! TACATAATCGGTTTAGGCTT+GGG - chr3.4:97801299-97801318 MS.gene064749:CDS 35.0%
! TGTAAACCTTGTCGCATTTT+TGG + chr3.4:97801364-97801383 None:intergenic 35.0%
! TGTCCGTTTGTTCATTTTAG+AGG - chr3.4:97802884-97802903 MS.gene064749:intron 35.0%
!! AAGTAGATAAGAGCGTTAGA+GGG - chr3.4:97802546-97802565 MS.gene064749:intron 35.0%
!! TCATTAAGTATTGGTTGCTG+AGG - chr3.4:97802753-97802772 MS.gene064749:intron 35.0%
!!! TTGTTGTTGGTGATCCTTTT+GGG - chr3.4:97801546-97801565 MS.gene064749:intron 35.0%
ACTTGAATCTTTGTGCAGGT+TGG - chr3.4:97802680-97802699 MS.gene064749:intron 40.0%
AGCATGAGAAAGTTGAGCTT+GGG + chr3.4:97801519-97801538 None:intergenic 40.0%
AGCTATCCAAAAATGCGACA+AGG - chr3.4:97801355-97801374 MS.gene064749:CDS 40.0%
ATGAATGCAATTGGGATCTG+TGG - chr3.4:97801743-97801762 MS.gene064749:intron 40.0%
CAAAAGGATCACCAACAACA+AGG + chr3.4:97801547-97801566 None:intergenic 40.0%
CAATTCCCATCTTCTTAGCT+CGG + chr3.4:97801694-97801713 None:intergenic 40.0%
CCAACACATTAGAGACTAGA+TGG + chr3.4:97803525-97803544 None:intergenic 40.0%
CCATCTAGTCTCTAATGTGT+TGG - chr3.4:97803522-97803541 MS.gene064749:CDS 40.0%
CTAGGCATGAGTTTCATATC+TGG - chr3.4:97803023-97803042 MS.gene064749:intron 40.0%
CTGCACAAAGATTCAAGTGT+CGG + chr3.4:97802678-97802697 None:intergenic 40.0%
CTTCACACACTTTGCTTGTT+AGG - chr3.4:97801872-97801891 MS.gene064749:intron 40.0%
GAGCAAGATATCACACTCAA+AGG - chr3.4:97801326-97801345 MS.gene064749:CDS 40.0%
GCATCTGTGATGAATGCAAT+TGG - chr3.4:97801734-97801753 MS.gene064749:intron 40.0%
GGTTTGCAGCTATATCGTTA+TGG - chr3.4:97801764-97801783 MS.gene064749:intron 40.0%
TACCTTTCTTTACTGAGACG+TGG - chr3.4:97801801-97801820 MS.gene064749:intron 40.0%
TACTCTTGCTGACAGAGAAA+TGG - chr3.4:97801466-97801485 MS.gene064749:intron 40.0%
TCCCTTAGAGGAAGAAATGT+TGG - chr3.4:97804010-97804029 MS.gene064749:CDS 40.0%
TCTCTGTCAGCAAGAGTAAT+GGG + chr3.4:97801464-97801483 None:intergenic 40.0%
TTCTCTGTCAGCAAGAGTAA+TGG + chr3.4:97801465-97801484 None:intergenic 40.0%
TTGACCATTCACATCACTCT+AGG - chr3.4:97803005-97803024 MS.gene064749:intron 40.0%
! ACATTTCTTCCTCTAAGGGA+TGG + chr3.4:97804010-97804029 None:intergenic 40.0%
! CACACTTTGCTTGTTAGGTT+AGG - chr3.4:97801877-97801896 MS.gene064749:intron 40.0%
! CATTTCTTCCTCTAAGGGAT+GGG + chr3.4:97804009-97804028 None:intergenic 40.0%
!! AGTAGATAAGAGCGTTAGAG+GGG - chr3.4:97802547-97802566 MS.gene064749:intron 40.0%
!! GAAGTAGATAAGAGCGTTAG+AGG - chr3.4:97802545-97802564 MS.gene064749:intron 40.0%
!! GAGTAAGTTTCTGGCAAACA+AGG + chr3.4:97803113-97803132 None:intergenic 40.0%
!!! ACCGTATAGTTTTTCGAGGT+TGG + chr3.4:97801438-97801457 None:intergenic 40.0%
!!! ATAGTTTTTCGAGGTTGGAG+AGG + chr3.4:97801433-97801452 None:intergenic 40.0%
!!! CTTGTTGTTGGTGATCCTTT+TGG - chr3.4:97801545-97801564 MS.gene064749:intron 40.0%
ACACTCGGTATCTTCTGTGT+AGG + chr3.4:97803871-97803890 None:intergenic 45.0%
ACAGAAGATACCGAGTGTGT+TGG - chr3.4:97803873-97803892 MS.gene064749:CDS 45.0%
CACAGCCATTGAGCAGTTAT+TGG - chr3.4:97802946-97802965 MS.gene064749:intron 45.0%
CAGAAGATACCGAGTGTGTT+GGG - chr3.4:97803874-97803893 MS.gene064749:CDS 45.0%
CAGCATGAGAAAGTTGAGCT+TGG + chr3.4:97801520-97801539 None:intergenic 45.0%
CATGCCTAGAGTGATGTGAA+TGG + chr3.4:97803012-97803031 None:intergenic 45.0%
CCAAACGAAAAGAGCCAAAG+AGG + chr3.4:97803390-97803409 None:intergenic 45.0%
CGACACTTGAATCTTTGTGC+AGG - chr3.4:97802676-97802695 MS.gene064749:intron 45.0%
CTCCACGTCTCAGTAAAGAA+AGG + chr3.4:97801806-97801825 None:intergenic 45.0%
GGGTCTTGCCTGTTATTACT+AGG + chr3.4:97803989-97804008 None:intergenic 45.0%
GGTTACAGATATTCGGGTGA+AGG - chr3.4:97802650-97802669 MS.gene064749:intron 45.0%
GTTGTCCGAGCTAAGAAGAT+GGG - chr3.4:97801686-97801705 MS.gene064749:intron 45.0%
TACACTTCCCTTCTCTCCTT+CGG - chr3.4:97801392-97801411 MS.gene064749:CDS 45.0%
TATCTTCTGTGTAGGCTGCA+AGG + chr3.4:97803863-97803882 None:intergenic 45.0%
TCACAAGCACGTGAAGAATC+TGG - chr3.4:97802974-97802993 MS.gene064749:intron 45.0%
TCTTCTTAGCTCGGACAACA+AGG + chr3.4:97801685-97801704 None:intergenic 45.0%
TGTTGTCCGAGCTAAGAAGA+TGG - chr3.4:97801685-97801704 MS.gene064749:intron 45.0%
! GCATCACGGTTCTTTGGAAA+GGG - chr3.4:97802569-97802588 MS.gene064749:intron 45.0%
! TATTGGTTGCTGAGGTTCTC+TGG - chr3.4:97802761-97802780 MS.gene064749:intron 45.0%
!! CATGCTGCTTTCCTTGTTGT+TGG - chr3.4:97801533-97801552 MS.gene064749:intron 45.0%
!! TTAGCTTGCAGTTGCTGTTC+TGG - chr3.4:97803709-97803728 MS.gene064749:intron 45.0%
!!! CCTCTTTGGCTCTTTTCGTT+TGG - chr3.4:97803387-97803406 MS.gene064749:intron 45.0%
AGAGTAGGTGCGTACCCAAA+AGG + chr3.4:97801563-97801582 None:intergenic 50.0%
! GGCATCACGGTTCTTTGGAA+AGG - chr3.4:97802568-97802587 MS.gene064749:intron 50.0%
AAGAGAGGCCGAAGGAGAGA+AGG + chr3.4:97801403-97801422 None:intergenic 55.0%
ACGAGCAAGCCCAACACACT+CGG + chr3.4:97803886-97803905 None:intergenic 55.0%
AGAGAGGCCGAAGGAGAGAA+GGG + chr3.4:97801402-97801421 None:intergenic 55.0%
AGGCAAGACCCATCCCTTAG+AGG - chr3.4:97803998-97804017 MS.gene064749:CDS 55.0%
TCCTTCGGCCTCTCTTCACA+CGG - chr3.4:97801407-97801426 MS.gene064749:CDS 55.0%
TCTGTGTAGGCTGCAAGGCA+AGG + chr3.4:97803858-97803877 None:intergenic 55.0%
TGTAGGCTGCAAGGCAAGGT+GGG + chr3.4:97803854-97803873 None:intergenic 55.0%
! TGTGTTGGGCTTGCTCGTCT+TGG - chr3.4:97803888-97803907 MS.gene064749:CDS 55.0%
!! AGAGCGTTAGAGGGGCATCA+CGG - chr3.4:97802555-97802574 MS.gene064749:intron 55.0%
!! AGAGGGGCATCACGGTTCTT+TGG - chr3.4:97802563-97802582 MS.gene064749:intron 55.0%
GTGTAGGCTGCAAGGCAAGG+TGG + chr3.4:97803855-97803874 None:intergenic 60.0%
TGGAGAGGCCGTGTGAAGAG+AGG + chr3.4:97801418-97801437 None:intergenic 60.0%
GCCGTGTGAAGAGAGGCCGA+AGG + chr3.4:97801411-97801430 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 97801293 97804055 97801293 ID=MS.gene064749
chr3.4 mRNA 97801293 97804055 97801293 ID=MS.gene064749.t1;Parent=MS.gene064749
chr3.4 exon 97803781 97804055 97803781 ID=MS.gene064749.t1.exon1;Parent=MS.gene064749.t1
chr3.4 CDS 97803781 97804055 97803781 ID=cds.MS.gene064749.t1;Parent=MS.gene064749.t1
chr3.4 exon 97803455 97803684 97803455 ID=MS.gene064749.t1.exon2;Parent=MS.gene064749.t1
chr3.4 CDS 97803455 97803684 97803455 ID=cds.MS.gene064749.t1;Parent=MS.gene064749.t1
chr3.4 exon 97802651 97802690 97802651 ID=MS.gene064749.t1.exon3;Parent=MS.gene064749.t1
chr3.4 CDS 97802651 97802690 97802651 ID=cds.MS.gene064749.t1;Parent=MS.gene064749.t1
chr3.4 exon 97802353 97802444 97802353 ID=MS.gene064749.t1.exon4;Parent=MS.gene064749.t1
chr3.4 CDS 97802353 97802444 97802353 ID=cds.MS.gene064749.t1;Parent=MS.gene064749.t1
chr3.4 exon 97801293 97801480 97801293 ID=MS.gene064749.t1.exon5;Parent=MS.gene064749.t1
chr3.4 CDS 97801293 97801480 97801293 ID=cds.MS.gene064749.t1;Parent=MS.gene064749.t1
Gene Sequence

>MS.gene064749

ATGTTATACATAATCGGTTTAGGCTTGGGAGATGAGCAAGATATCACACTCAAAGGTTTAGAAGCTATCCAAAAATGCGACAAGGTTTACATGGAAGCTTACACTTCCCTTCTCTCCTTCGGCCTCTCTTCACACGGCCTCTCCAACCTCGAAAAACTATACGGTAAACCCATTACTCTTGCTGACAGAGAAATGGTTGAAGAAAAAGCAGATGATATTCTCTCCCAAGCTCAACTTTCTCATGCTGCTTTCCTTGTTGTTGGTGATCCTTTTGGGTACGCACCTACTCTCATATCTAATCTATATGATATGATTATGCCTAAGCAATTTTATTGTTTTGCTTCCATTATTGATTTTGGTGTTTTTCACAGGGCTACTACTCATACTGACCTTGTTGTCCGAGCTAAGAAGATGGGAATTGAAGTCAAAGTTGTGCACAATGCATCTGTGATGAATGCAATTGGGATCTGTGGTTTGCAGCTATATCGTTATGGAGAAACTGTTTCAATACCTTTCTTTACTGAGACGTGGAGACCTGATAGCTTCTATGAAAAGATTCAACAAAATCGAAATTTGGGACTTCACACACTTTGCTTGTTAGGTTAGGTTACTGTCTGTTATTTTTACTCTCAACTTGTGTATTAAGAATAATGATAGTTAGTAGTTGGTGTAGTTGTTACTTAATAGTCAAGTATGAAGTTAGCTAGAGCTAGTGATAAGAAGTGTTAGTTACTAGTTAGTGGATTCATATAAATAGGCTTTGATGTACTCTTTTATTGCAACTTTCTCATTTGTAAGATTGTTCAAAAAAAAAAAAAAAAAAAATGGAGAGAAAACTATGTGAAACTTTATATTGATATTATTGAACAATCTTACAAATGAGAAAGTTGCAATAAAAGAGTACATCAAAGCCTATTTATATGAATCCACTAACTAGCAACTAACACTTCTTATCACTAGCTCTAGCTAACTTCATACTTGACTATTAAGTAACAACTACACCAACTACTAACTATCATTATTCTTAATATTGTGCTCAATTGTTTGAAATTTTTGTGCCTGTATCAATGTCGCTTTTACAAGAAAATACATTGAATTTGGAATAACTAAGTGTTTGTTCCTGTTTGTATTGATCAACTCAAAGCATAAAACTTCTTTACTGAATTTATATAAAATGTCAAAGCCTAATAATATCATGTAAATATCTAAAACATGGTTAGCCATATAAATATTTTAAGCGATTGTGCTGGCTGAAGTAGATAAGAGCGTTAGAGGGGCATCACGGTTCTTTGGAAAGGGTACTAAAGCTCATTCTCTTTGCTTATTGAGAAAACTAATATAATTTTCACTTTGATATGGTTACAGATATTCGGGTGAAGGAGCCGACACTTGAATCTTTGTGCAGGTTGGTTTGACAAGTAGTCCTTTATTTTCCATTGATTAGGTAGTTTCTTAAGCTATCATTAAGTATTGGTTGCTGAGGTTCTCTGGAAATCGCTATTATGTTAGCAATATCATGGCATTGAATTTTGGTCTTATTAAATGGTTTGTTTTGTCTATATCTACCTATTCACTGATTTTCATTTATCTCTGTCCGTTTGTTCATTTTAGAGGAAGAAAAGCATACGAACCTCCCAGATATATGACTATAAACACAGCCATTGAGCAGTTATTGGAGATTTCACAAGCACGTGAAGAATCTGGTGAGTACTTTGACCATTCACATCACTCTAGGCATGAGTTTCATATCTGGCTTATGCATTTCTTGATTGTTGTAATAGTCAAATGTACATGTTTGAAATTTGATATGTATTTTACCTTGTTTGCCAGAAACTTACTCTAATAAGCTCATTTTCAGCTTTTTAAAAATTACTATGCTATCAAACAATGAAAGTTTCCCTAATGGAATAAAAGAAGCAAACTGGTGTGTAGACATATCATTGCTGCTATTATCAAGCAACTTATCAATAACTTTTCTCACCCAAATTCCTTTACCCTTTATAATTTGTGGCTGTTTAAAGCATAAATTAAATAGACATAGAAGTCAAAGCACTTATATATCTAGGATTTTTTTTTATGCACATTTGCTTACTTCCTCTTTGGCTCTTTTCGTTTGGTCTAGCTTATCTTCAAAGACACAAGAAATAAAATGATAATATTCTAAGCATTAGAGCCCATAAAATGTGATCCCATTCTCATTCTCAAAGATTATATAAATACTACACTTTGCCATCTAGTCTCTAATGTGTTGGATTGTGCAGATGAACTGCTACAATTAGTTCGAGTCTTGAGAAATTATAGTAAAACTAGACTCATTATAAATTTAGTATGCTAAAATGCTTTAGTGTCGAATTTTGTTTGAGCTGCTGATATATATCGATCATTGATTCATTTCTATATTTGTGGTTCATATATATTAGCTTGCAGTTGCTGTTCTGGATCGTATTCTTGTCTTATATTATTATCTGATTAGGAAACAATTTTCTCGGTGATATTTGTTTTGATACTTGAGCTATTATTTCTCACAAGAATCATATCCATCAAACTGAAAGTAGTATCCCACCTTGCCTTGCAGCCTACACAGAAGATACCGAGTGTGTTGGGCTTGCTCGTCTTGGAAGTGAAGATCAAATAATAGTAGCTGGAACAATGAAGCAACTACAATTGATTGACTTTGGAGCGCCTTTGCATTGCCTAGTAATAACAGGCAAGACCCATCCCTTAGAGGAAGAAATGTTGGATTTTTACAGATGCAAACCGTAG
Protein sequence

>MS.gene064749.t1

MLYIIGLGLGDEQDITLKGLEAIQKCDKVYMEAYTSLLSFGLSSHGLSNLEKLYGKPITLADREMVEEKADDILSQAQLSHAAFLVVGDPFGATTHTDLVVRAKKMGIEVKVVHNASVMNAIGICGLQLYRYGETVSIPFFTETWRPDSFYEKIQQNRNLGLHTLCLLDIRVKEPTLESLCRGRKAYEPPRYMTINTAIEQLLEISQAREESAYTEDTECVGLARLGSEDQIIVAGTMKQLQLIDFGAPLHCLVITGKTHPLEEEMLDFYRCKP