AlfalfaGEDB | MS.gene50564

M. sativa cultivar XinJiangDaYe / MS.gene50564

KEGG: K11251
GO: GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005634 GO:0032991 GO:0032993 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044815 GO:0046982 GO:0046983 GO:0097159 GO:0110165 GO:1901363
PFAM: PF00125.27 PF16211.8

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50564.t1	XP_003590550.1	100	134	0	0	1	134	1	134	8.80E-65	256.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50564.t1	Q8S857	90.6	139	8	2	1	134	1	139	4.3e-60	231.9

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50564.t1	G7ICP3	100.0	134	0	0	1	134	1	134	6.3e-65	256.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049190	MS.gene50564	0.839151	1.88E-57	-1.69E-46
MS.gene049341	MS.gene50564	0.809957	1.46E-50	-1.69E-46
MS.gene049350	MS.gene50564	0.813739	2.20E-51	-1.69E-46
MS.gene049672	MS.gene50564	0.804774	1.84E-49	-1.69E-46
MS.gene049711	MS.gene50564	0.822565	2.21E-53	-1.69E-46
MS.gene049807	MS.gene50564	0.804536	2.06E-49	-1.69E-46
MS.gene049821	MS.gene50564	0.842369	2.70E-58	-1.69E-46
MS.gene049824	MS.gene50564	0.817079	3.97E-52	-1.69E-46
MS.gene049825	MS.gene50564	0.809493	1.84E-50	-1.69E-46
MS.gene049850	MS.gene50564	0.844339	8.04E-59	-1.69E-46
MS.gene049873	MS.gene50564	0.805667	1.19E-49	-1.69E-46
MS.gene050020	MS.gene50564	0.827396	1.60E-54	-1.69E-46
MS.gene050241	MS.gene50564	0.821663	3.58E-53	-1.69E-46
MS.gene050559	MS.gene50564	0.800434	1.44E-48	-1.69E-46
MS.gene050807	MS.gene50564	0.816892	4.38E-52	-1.69E-46
MS.gene050808	MS.gene50564	0.800253	1.57E-48	-1.69E-46
MS.gene050901	MS.gene50564	0.855029	8.30E-62	-1.69E-46
MS.gene051018	MS.gene50564	0.809422	1.91E-50	-1.69E-46
MS.gene051247	MS.gene50564	0.833085	6.53E-56	-1.69E-46
MS.gene051279	MS.gene50564	0.818086	2.35E-52	-1.69E-46
MS.gene051328	MS.gene50564	0.804326	2.28E-49	-1.69E-46
MS.gene05157	MS.gene50564	0.866526	2.67E-65	-1.69E-46
MS.gene051664	MS.gene50564	0.803145	4.01E-49	-1.69E-46
MS.gene051700	MS.gene50564	0.824513	7.75E-54	-1.69E-46
MS.gene051719	MS.gene50564	0.863638	2.16E-64	-1.69E-46
MS.gene051720	MS.gene50564	0.876891	9.73E-69	-1.69E-46
MS.gene051744	MS.gene50564	0.847151	1.39E-59	-1.69E-46
MS.gene051957	MS.gene50564	0.813707	2.23E-51	-1.69E-46
MS.gene052133	MS.gene50564	0.842494	2.50E-58	-1.69E-46
MS.gene052516	MS.gene50564	0.825377	4.85E-54	-1.69E-46
MS.gene052519	MS.gene50564	0.800182	1.62E-48	-1.69E-46
MS.gene052582	MS.gene50564	0.803407	3.54E-49	-1.69E-46
MS.gene052584	MS.gene50564	0.804346	2.26E-49	-1.69E-46
MS.gene052665	MS.gene50564	0.804573	2.02E-49	-1.69E-46
MS.gene052732	MS.gene50564	0.815371	9.57E-52	-1.69E-46
MS.gene052879	MS.gene50564	0.820888	5.41E-53	-1.69E-46
MS.gene052880	MS.gene50564	0.808403	3.15E-50	-1.69E-46
MS.gene053122	MS.gene50564	0.853888	1.77E-61	-1.69E-46
MS.gene053144	MS.gene50564	0.864333	1.31E-64	-1.69E-46
MS.gene053171	MS.gene50564	0.810689	1.02E-50	-1.69E-46
MS.gene053174	MS.gene50564	0.803768	2.98E-49	-1.69E-46
MS.gene053226	MS.gene50564	0.853929	1.73E-61	-1.69E-46
MS.gene053563	MS.gene50564	0.807328	5.33E-50	-1.69E-46
MS.gene053581	MS.gene50564	0.872992	2.08E-67	-1.69E-46
MS.gene053599	MS.gene50564	0.845885	3.07E-59	-1.69E-46
MS.gene053883	MS.gene50564	0.809352	1.97E-50	-1.69E-46
MS.gene054550	MS.gene50564	0.806926	6.49E-50	-1.69E-46
MS.gene054584	MS.gene50564	0.865906	4.20E-65	-1.69E-46
MS.gene054651	MS.gene50564	0.81407	1.86E-51	-1.69E-46
MS.gene055465	MS.gene50564	0.866147	3.53E-65	-1.69E-46
MS.gene055466	MS.gene50564	0.880413	5.61E-70	-1.69E-46
MS.gene055468	MS.gene50564	0.864228	1.41E-64	-1.69E-46
MS.gene055469	MS.gene50564	0.81093	9.02E-51	-1.69E-46
MS.gene055512	MS.gene50564	0.821543	3.82E-53	-1.69E-46
MS.gene055513	MS.gene50564	0.801697	7.97E-49	-1.69E-46
MS.gene055537	MS.gene50564	0.853811	1.87E-61	-1.69E-46
MS.gene055580	MS.gene50564	-0.876805	1.04E-68	-1.69E-46
MS.gene055778	MS.gene50564	0.833807	4.31E-56	-1.69E-46
MS.gene055890	MS.gene50564	0.800369	1.49E-48	-1.69E-46
MS.gene055891	MS.gene50564	0.80745	5.03E-50	-1.69E-46
MS.gene056005	MS.gene50564	0.845581	3.71E-59	-1.69E-46
MS.gene056043	MS.gene50564	-0.84712	1.41E-59	-1.69E-46
MS.gene05608	MS.gene50564	0.833645	4.74E-56	-1.69E-46
MS.gene056169	MS.gene50564	0.805435	1.34E-49	-1.69E-46
MS.gene056215	MS.gene50564	0.834227	3.39E-56	-1.69E-46
MS.gene056228	MS.gene50564	0.821773	3.38E-53	-1.69E-46
MS.gene056308	MS.gene50564	0.829862	4.06E-55	-1.69E-46
MS.gene056366	MS.gene50564	0.820473	6.73E-53	-1.69E-46
MS.gene057294	MS.gene50564	0.825192	5.36E-54	-1.69E-46
MS.gene057314	MS.gene50564	0.810765	9.79E-51	-1.69E-46
MS.gene057693	MS.gene50564	0.815391	9.47E-52	-1.69E-46
MS.gene057705	MS.gene50564	0.833506	5.13E-56	-1.69E-46
MS.gene057915	MS.gene50564	0.821564	3.78E-53	-1.69E-46
MS.gene058216	MS.gene50564	0.803032	4.23E-49	-1.69E-46
MS.gene05847	MS.gene50564	0.802978	4.34E-49	-1.69E-46
MS.gene058625	MS.gene50564	0.842774	2.11E-58	-1.69E-46
MS.gene058668	MS.gene50564	0.821706	3.50E-53	-1.69E-46
MS.gene05894	MS.gene50564	0.810424	1.16E-50	-1.69E-46
MS.gene059015	MS.gene50564	0.82464	7.24E-54	-1.69E-46
MS.gene059084	MS.gene50564	0.8047	1.91E-49	-1.69E-46
MS.gene059625	MS.gene50564	0.825529	4.46E-54	-1.69E-46
MS.gene05978	MS.gene50564	0.812952	3.27E-51	-1.69E-46
MS.gene060194	MS.gene50564	0.825879	3.69E-54	-1.69E-46
MS.gene060429	MS.gene50564	0.844925	5.59E-59	-1.69E-46
MS.gene060519	MS.gene50564	0.861453	1.02E-63	-1.69E-46
MS.gene060587	MS.gene50564	0.857328	1.76E-62	-1.69E-46
MS.gene060603	MS.gene50564	0.811522	6.71E-51	-1.69E-46
MS.gene060884	MS.gene50564	0.817695	2.89E-52	-1.69E-46
MS.gene060886	MS.gene50564	0.818629	1.77E-52	-1.69E-46
MS.gene061176	MS.gene50564	0.812778	3.57E-51	-1.69E-46
MS.gene061177	MS.gene50564	0.812668	3.78E-51	-1.69E-46
MS.gene061178	MS.gene50564	0.812516	4.08E-51	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene065078	MS.gene50564	PPI
MS.gene50564	MS.gene76254	PPI
MS.gene029348	MS.gene50564	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50564.t1	MTR_1g071040	100.000	134	0	0	1	134	1	134	1.08e-93	266
MS.gene50564.t1	MTR_1g114050	91.473	129	11	0	6	134	3	131	5.70e-82	236
MS.gene50564.t1	MTR_1g011750	86.567	134	18	0	1	134	1	134	1.01e-79	231
MS.gene50564.t1	MTR_1g011850	86.567	134	18	0	1	134	1	134	1.01e-79	231
MS.gene50564.t1	MTR_4g048490	67.910	134	14	1	1	134	1	105	1.86e-47	149
MS.gene50564.t1	MTR_7g027610	67.213	122	14	2	13	134	3	98	5.87e-44	140
MS.gene50564.t1	MTR_2g082510	64.545	110	37	2	24	132	14	122	1.02e-39	130
MS.gene50564.t1	MTR_2g082220	64.545	110	37	2	24	132	14	122	1.22e-39	129
MS.gene50564.t1	MTR_7g108320	59.016	122	47	3	11	130	6	126	2.72e-39	129
MS.gene50564.t1	MTR_7g114060	59.664	119	45	3	14	130	6	123	1.44e-38	127
MS.gene50564.t1	MTR_7g114040	59.664	119	45	3	14	130	6	123	1.44e-38	127
MS.gene50564.t1	MTR_7g093910	55.118	127	50	3	10	130	1	126	5.28e-38	126
MS.gene50564.t1	MTR_2g096610	60.550	109	41	2	23	130	19	126	3.48e-36	121
MS.gene50564.t1	MTR_0653s0030	61.111	108	17	1	5	112	15	97	4.60e-36	121
MS.gene50564.t1	MTR_7g113160	55.752	113	48	2	19	130	19	130	5.97e-36	120
MS.gene50564.t1	MTR_4g063280	60.550	109	41	2	23	130	15	122	1.83e-35	119
MS.gene50564.t1	MTR_4g071150	62.500	104	37	2	28	130	26	128	8.63e-35	118
MS.gene50564.t1	MTR_4g064967	60.952	105	39	2	27	130	25	128	1.30e-34	117
MS.gene50564.t1	MTR_2g096570	60.952	105	39	2	27	130	24	127	1.80e-34	117
MS.gene50564.t1	MTR_4g064005	61.538	104	38	2	28	130	26	128	1.86e-34	117
MS.gene50564.t1	MTR_8g086640	58.716	109	43	2	27	134	25	132	2.56e-34	117
MS.gene50564.t1	MTR_4g063410	60.000	105	40	2	27	130	25	128	5.83e-34	115
MS.gene50564.t1	MTR_7g114050	49.593	123	48	5	10	130	4	114	6.31e-27	97.4
MS.gene50564.t1	MTR_4g063300	62.687	67	24	1	55	120	17	83	1.66e-20	80.9
MS.gene50564.t1	MTR_6g005150	45.283	106	47	4	27	130	27	123	3.00e-19	78.2
MS.gene50564.t1	MTR_7g427690	78.947	38	8	0	96	133	412	449	3.05e-12	62.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50564.t1	AT3G54560	91.912	136	9	1	1	134	1	136	5.04e-79	229
MS.gene50564.t1	AT3G54560	91.912	136	9	1	1	134	1	136	5.04e-79	229
MS.gene50564.t1	AT2G38810	89.706	136	12	1	1	134	1	136	8.18e-77	224
MS.gene50564.t1	AT2G38810	89.706	136	12	1	1	134	1	136	8.18e-77	224
MS.gene50564.t1	AT2G38810	89.706	136	12	1	1	134	1	136	8.18e-77	224
MS.gene50564.t1	AT2G38810	89.706	136	12	1	1	134	1	136	8.18e-77	224
MS.gene50564.t1	AT1G52740	82.836	134	23	0	1	134	1	134	2.06e-71	210
MS.gene50564.t1	AT4G13570	78.022	91	20	0	34	124	28	118	3.18e-47	148
MS.gene50564.t1	AT4G13570	78.889	90	19	0	35	124	35	124	6.47e-47	148
MS.gene50564.t1	AT3G20670	64.545	110	37	2	24	132	14	122	6.35e-40	130
MS.gene50564.t1	AT4G27230	64.545	110	37	2	24	132	14	122	1.04e-39	130
MS.gene50564.t1	AT4G27230	64.545	110	37	2	24	132	14	122	1.04e-39	130
MS.gene50564.t1	AT5G54640	64.545	110	37	2	24	132	14	122	1.13e-39	130
MS.gene50564.t1	AT1G51060	63.889	108	37	2	24	130	14	120	4.16e-39	128
MS.gene50564.t1	AT5G02560	60.177	113	43	2	23	134	21	132	1.12e-38	128
MS.gene50564.t1	AT1G08880	59.829	117	44	3	14	128	9	124	1.56e-38	127
MS.gene50564.t1	AT1G54690	59.829	117	44	3	14	128	9	124	1.94e-38	127
MS.gene50564.t1	AT5G27670	60.177	113	43	2	19	130	18	129	9.18e-37	123
MS.gene50564.t1	AT5G59870	59.633	109	42	2	23	130	21	128	7.33e-35	118
MS.gene50564.t1	AT5G02560	49.635	137	43	3	23	134	21	156	2.88e-33	115

Find 42 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGCATTTGCAGCTTGCTATC+AGG	0.247896	1.2:+54374737	MS.gene50564:CDS
AGCAACAGCTGCAGTGTATT+TGG	0.282329	1.2:+54374627	MS.gene50564:CDS
TTCTTCTCGTGCTGGAATTC+AGG	0.284428	1.2:+54373564	MS.gene50564:CDS
AAAGCAAAGAAATCATTCTT+TGG	0.335830	1.2:-54374851	None:intergenic
AGTGTATTTGGCATCCATTC+TGG	0.360664	1.2:+54374639	MS.gene50564:CDS
CAGCAATTGTTCCCTTGATA+AGG	0.371937	1.2:-54374780	None:intergenic
CTTATCAAGGGAACAATTGC+TGG	0.372156	1.2:+54374781	MS.gene50564:CDS
CTCCGACACGTCCATTAGCT+TGG	0.422586	1.2:-54374606	None:intergenic
AGCAATTGTTCCCTTGATAA+GGG	0.441041	1.2:-54374779	None:intergenic
AAGCAAAGAGTCCAAGCTAA+TGG	0.447447	1.2:+54374595	MS.gene50564:CDS
ACTTCTCGTTCTTCTCGTGC+TGG	0.468244	1.2:+54373556	MS.gene50564:CDS
AAATGCTAGCAAAGATTTGA+AGG	0.477120	1.2:+54374696	MS.gene50564:CDS
GACTGCTGAAGTTCTTGAGC+TGG	0.480553	1.2:+54374669	MS.gene50564:CDS
CTCTTTGCTTCAGCTGTCTG+TGG	0.485476	1.2:-54374582	None:intergenic
GCATTTGCAGCTTGCTATCA+GGG	0.487874	1.2:+54374738	MS.gene50564:CDS
GCTGAAGTTCTTGAGCTGGC+TGG	0.490963	1.2:+54374673	MS.gene50564:CDS
TCAGGTGATTAAGCAATGGC+AGG	0.495436	1.2:+54373463	None:intergenic
ATGGCAGGAAAAGGAGGAAA+AGG	0.512104	1.2:+54373478	MS.gene50564:CDS
GGAACTTGATACCCTTATCA+AGG	0.512125	1.2:+54374768	MS.gene50564:CDS
GATTAAGCAATGGCAGGAAA+AGG	0.523608	1.2:+54373469	None:intergenic
CTTGTCTTTGTTAGCCGCGG+TGG	0.527714	1.2:-54373518	None:intergenic
GTCCTTGTCTTTGTTAGCCG+CGG	0.546728	1.2:-54373521	None:intergenic
GCAAAGATTTGAAGGTGAAG+AGG	0.563947	1.2:+54374704	MS.gene50564:CDS
TGGTGGTTGTAGTTTCCTGT+GGG	0.573166	1.2:+54374553	MS.gene50564:intron
ATGGTGGTTGTAGTTTCCTG+TGG	0.574055	1.2:+54374552	MS.gene50564:intron
GGTTGTAGTTTCCTGTGGGT+AGG	0.590033	1.2:+54374557	MS.gene50564:intron
AGCAGTCAGATACTCCAGAA+TGG	0.591746	1.2:-54374653	None:intergenic
ATAGCAAGCTGCAAATGCCT+TGG	0.592261	1.2:-54374733	None:intergenic
GCTTGCTATCAGGGGAGATG+AGG	0.593400	1.2:+54374747	MS.gene50564:CDS
GTCCAAGCTAATGGACGTGT+CGG	0.596665	1.2:+54374604	MS.gene50564:CDS
TAAGCAATGGCAGGAAAAGG+AGG	0.606722	1.2:+54373472	None:intergenic
AGCACGAGAAGAACGAGAAG+TGG	0.609010	1.2:-54373554	None:intergenic
CATTTGCAGCTTGCTATCAG+GGG	0.612353	1.2:+54374739	MS.gene50564:CDS
AAGGGAACAATTGCTGGTGG+TGG	0.621502	1.2:+54374787	MS.gene50564:CDS
GAACTTGATACCCTTATCAA+GGG	0.630061	1.2:+54374769	MS.gene50564:CDS
ATCAAGGACTTGTGGATGTG+AGG	0.631787	1.2:-54374817	None:intergenic
GCACGAGAAGAACGAGAAGT+GGG	0.642443	1.2:-54373553	None:intergenic
CACCGCGGCTAACAAAGACA+AGG	0.646788	1.2:+54373519	MS.gene50564:CDS
TGTCTGTGGATCCTACCCAC+AGG	0.647982	1.2:-54374568	None:intergenic
ATCAAGGGAACAATTGCTGG+TGG	0.659902	1.2:+54374784	MS.gene50564:CDS
AGGTGAAGAGGATTACACCA+AGG	0.739394	1.2:+54374716	MS.gene50564:CDS
CGTTGCAGCGAAAACCACCG+CGG	0.789660	1.2:+54373504	MS.gene50564:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATAAGTTTAATTTCGATTTA+AGG	+	chr1.2:54374219-54374238	MS.gene50564:intron	15.0%
!!!	CTATGTTCTTTAATTTTTTA+GGG	+	chr1.2:54373857-54373876	MS.gene50564:intron	15.0%
!!!	TCTATGTTCTTTAATTTTTT+AGG	+	chr1.2:54373856-54373875	MS.gene50564:intron	15.0%
!!!	TTTTCTGTGTAAATTTTTTA+GGG	+	chr1.2:54373731-54373750	MS.gene50564:intron	15.0%
!!!	TTTTTCTGTGTAAATTTTTT+AGG	+	chr1.2:54373730-54373749	MS.gene50564:intron	15.0%
!!	ATCTGTAAATGATAATTAAC+AGG	-	chr1.2:54374460-54374479	None:intergenic	20.0%
!!	TAACAAAACAAAAATAACAG+AGG	-	chr1.2:54374499-54374518	None:intergenic	20.0%
!!	TGAGATTAAATTAATACCTT+TGG	+	chr1.2:54374414-54374433	MS.gene50564:intron	20.0%
!!!	ATTAACTGTAAAATTTGCTA+TGG	+	chr1.2:54374533-54374552	MS.gene50564:intron	20.0%
!!!	CGATTTTCTTTATTTTTCTA+GGG	+	chr1.2:54373619-54373638	MS.gene50564:intron	20.0%
!!!	TCGATTTTCTTTATTTTTCT+AGG	+	chr1.2:54373618-54373637	MS.gene50564:intron	20.0%
!!!	TCTTTAATTTTTTAGGGTTA+GGG	+	chr1.2:54373863-54373882	MS.gene50564:intron	20.0%
!!!	TTCTTTAATTTTTTAGGGTT+AGG	+	chr1.2:54373862-54373881	MS.gene50564:intron	20.0%
!	AAAATCGAAAAAACGAAGAA+AGG	-	chr1.2:54373606-54373625	None:intergenic	25.0%
!	AAATCGAAAAAACGAAGAAA+GGG	-	chr1.2:54373605-54373624	None:intergenic	25.0%
!	AAGAAAATACATGTTATCAG+GGG	-	chr1.2:54373979-54373998	None:intergenic	25.0%
!	ACAAAAATAACAGAGGAAAA+TGG	-	chr1.2:54374492-54374511	None:intergenic	25.0%
!	ACAAGAAAATACATGTTATC+AGG	-	chr1.2:54373981-54374000	None:intergenic	25.0%
!	ATCTTAACACTATTAGTGTA+TGG	+	chr1.2:54374352-54374371	MS.gene50564:intron	25.0%
!	CAAAAATAACAGAGGAAAAT+GGG	-	chr1.2:54374491-54374510	None:intergenic	25.0%
!	CAAGAAAATACATGTTATCA+GGG	-	chr1.2:54373980-54373999	None:intergenic	25.0%
!!	TTTAGAATTAAACCCTAGAT+GGG	-	chr1.2:54373798-54373817	None:intergenic	25.0%
!!!	CAAATGTCCTTTTATTTAAC+CGG	+	chr1.2:54374379-54374398	MS.gene50564:intron	25.0%
!!!	GTAACTTTAGAATTAGTGTA+TGG	+	chr1.2:54374287-54374306	MS.gene50564:intron	25.0%
!!!	GTGTAAATTTTTTAGGGTTA+GGG	+	chr1.2:54373737-54373756	MS.gene50564:intron	25.0%
!!!	TCTTTATTTTTCTAGGGTTA+GGG	+	chr1.2:54373625-54373644	MS.gene50564:intron	25.0%
!!!	TGTGTAAATTTTTTAGGGTT+AGG	+	chr1.2:54373736-54373755	MS.gene50564:intron	25.0%
!!!	TTCTTTATTTTTCTAGGGTT+AGG	+	chr1.2:54373624-54373643	MS.gene50564:intron	25.0%
	AAACGAAGAAAGGGAAAAAA+AGG	-	chr1.2:54373596-54373615	None:intergenic	30.0%
	AAATGCTAGCAAAGATTTGA+AGG	+	chr1.2:54374696-54374715	MS.gene50564:CDS	30.0%
	AACATCTACATGAAATCCAA+AGG	-	chr1.2:54374433-54374452	None:intergenic	30.0%
	AACGAAGAAAGGGAAAAAAA+GGG	-	chr1.2:54373595-54373614	None:intergenic	30.0%
	TAGACGATAATTCTCATCTA+GGG	+	chr1.2:54373663-54373682	MS.gene50564:intron	30.0%
	TTAGACGATAATTCTCATCT+AGG	+	chr1.2:54373662-54373681	MS.gene50564:intron	30.0%
	TTTATAATCAACCCCCAATT+GGG	-	chr1.2:54373923-54373942	None:intergenic	30.0%
!	TTTGAAACAGAATTAAGCGA+TGG	+	chr1.2:54373886-54373905	MS.gene50564:intron	30.0%
!!	AACTGTAAAATTTGCTATGG+TGG	+	chr1.2:54374536-54374555	MS.gene50564:intron	30.0%
!!	CTTTAGAATTAAACCCTAGA+TGG	-	chr1.2:54373799-54373818	None:intergenic	30.0%
!!!	GCAGAGAAGTAATTTTTTGT+TGG	+	chr1.2:54374190-54374209	MS.gene50564:intron	30.0%
	AATCTCAAAAATCAGCTCTC+CGG	-	chr1.2:54374401-54374420	None:intergenic	35.0%
	AGCAATTGTTCCCTTGATAA+GGG	-	chr1.2:54374782-54374801	None:intergenic	35.0%
	CTTTATAATCAACCCCCAAT+TGG	-	chr1.2:54373924-54373943	None:intergenic	35.0%
	GAACTTGATACCCTTATCAA+GGG	+	chr1.2:54374769-54374788	MS.gene50564:CDS	35.0%
!	ACAGAATTAAGCGATGGTTT+TGG	+	chr1.2:54373892-54373911	MS.gene50564:intron	35.0%
!	AGTTTTCAGATACCCATCTA+GGG	+	chr1.2:54373783-54373802	MS.gene50564:intron	35.0%
!	CAGAATTAAGCGATGGTTTT+GGG	+	chr1.2:54373893-54373912	MS.gene50564:intron	35.0%
!	TAGTTTTCAGATACCCATCT+AGG	+	chr1.2:54373782-54373801	MS.gene50564:intron	35.0%
!	TTTTGTTGATCAAGGACTTG+TGG	-	chr1.2:54374828-54374847	None:intergenic	35.0%
!!!	TTTGGCAGTTTTGTTGATCA+AGG	-	chr1.2:54374836-54374855	None:intergenic	35.0%
	AAGCAAAGAGTCCAAGCTAA+TGG	+	chr1.2:54374595-54374614	MS.gene50564:CDS	40.0%
	AGTGTATTTGGCATCCATTC+TGG	+	chr1.2:54374639-54374658	MS.gene50564:CDS	40.0%
	CAGCAATTGTTCCCTTGATA+AGG	-	chr1.2:54374783-54374802	None:intergenic	40.0%
	CAGCTCTCCGGTTAAATAAA+AGG	-	chr1.2:54374389-54374408	None:intergenic	40.0%
	CTTATCAAGGGAACAATTGC+TGG	+	chr1.2:54374781-54374800	MS.gene50564:CDS	40.0%
	GCAAAGATTTGAAGGTGAAG+AGG	+	chr1.2:54374704-54374723	MS.gene50564:CDS	40.0%
	GGAACTTGATACCCTTATCA+AGG	+	chr1.2:54374768-54374787	MS.gene50564:CDS	40.0%
!	TAGGGTTAGGGTTTGAAACA+AGG	+	chr1.2:54373637-54373656	MS.gene50564:intron	40.0%
!!	TTTTGGGAATACCCAATTGG+GGG	+	chr1.2:54373909-54373928	MS.gene50564:intron	40.0%
!!!	GGTTTTGGGAATACCCAATT+GGG	+	chr1.2:54373907-54373926	MS.gene50564:intron	40.0%
!!!	GTTTTGGGAATACCCAATTG+GGG	+	chr1.2:54373908-54373927	MS.gene50564:intron	40.0%
!!!	TGGTTTTGGGAATACCCAAT+TGG	+	chr1.2:54373906-54373925	MS.gene50564:intron	40.0%
	AGCAACAGCTGCAGTGTATT+TGG	+	chr1.2:54374627-54374646	MS.gene50564:CDS	45.0%
	AGCAGTCAGATACTCCAGAA+TGG	-	chr1.2:54374656-54374675	None:intergenic	45.0%
	AGGTGAAGAGGATTACACCA+AGG	+	chr1.2:54374716-54374735	MS.gene50564:CDS	45.0%
	ATAGCAAGCTGCAAATGCCT+TGG	-	chr1.2:54374736-54374755	None:intergenic	45.0%
	ATCAAGGACTTGTGGATGTG+AGG	-	chr1.2:54374820-54374839	None:intergenic	45.0%
	ATCAAGGGAACAATTGCTGG+TGG	+	chr1.2:54374784-54374803	MS.gene50564:CDS	45.0%
	ATGGCAGGAAAAGGAGGAAA+AGG	+	chr1.2:54373478-54373497	MS.gene50564:CDS	45.0%
	ATGGTGGTTGTAGTTTCCTG+TGG	+	chr1.2:54374552-54374571	MS.gene50564:intron	45.0%
	TGGTGGTTGTAGTTTCCTGT+GGG	+	chr1.2:54374553-54374572	MS.gene50564:intron	45.0%
	TTCTTCTCGTGCTGGAATTC+AGG	+	chr1.2:54373564-54373583	MS.gene50564:CDS	45.0%
!!	CATTTGCAGCTTGCTATCAG+GGG	+	chr1.2:54374739-54374758	MS.gene50564:CDS	45.0%
!!	GCATTTGCAGCTTGCTATCA+GGG	+	chr1.2:54374738-54374757	MS.gene50564:CDS	45.0%
!!!	TTTTTTTTTTTTTTTTTTTG+TGG	+	chr1.2:54374114-54374133	MS.gene50564:intron	5.0%
	AAGGGAACAATTGCTGGTGG+TGG	+	chr1.2:54374787-54374806	MS.gene50564:CDS	50.0%
	ACTTCTCGTTCTTCTCGTGC+TGG	+	chr1.2:54373556-54373575	MS.gene50564:CDS	50.0%
	AGCACGAGAAGAACGAGAAG+TGG	-	chr1.2:54373557-54373576	None:intergenic	50.0%
	CTCTTTGCTTCAGCTGTCTG+TGG	-	chr1.2:54374585-54374604	None:intergenic	50.0%
	GACTGCTGAAGTTCTTGAGC+TGG	+	chr1.2:54374669-54374688	MS.gene50564:CDS	50.0%
	GCACGAGAAGAACGAGAAGT+GGG	-	chr1.2:54373556-54373575	None:intergenic	50.0%
	GGTTGTAGTTTCCTGTGGGT+AGG	+	chr1.2:54374557-54374576	MS.gene50564:intron	50.0%
	GTCCTTGTCTTTGTTAGCCG+CGG	-	chr1.2:54373524-54373543	None:intergenic	50.0%
!	GTCCAAGCTAATGGACGTGT+CGG	+	chr1.2:54374604-54374623	MS.gene50564:CDS	50.0%
!!	GGCATTTGCAGCTTGCTATC+AGG	+	chr1.2:54374737-54374756	MS.gene50564:CDS	50.0%
	CACCGCGGCTAACAAAGACA+AGG	+	chr1.2:54373519-54373538	MS.gene50564:CDS	55.0%
	CTCCGACACGTCCATTAGCT+TGG	-	chr1.2:54374609-54374628	None:intergenic	55.0%
	CTTGTCTTTGTTAGCCGCGG+TGG	-	chr1.2:54373521-54373540	None:intergenic	55.0%
	GCTGAAGTTCTTGAGCTGGC+TGG	+	chr1.2:54374673-54374692	MS.gene50564:CDS	55.0%
	TGTCTGTGGATCCTACCCAC+AGG	-	chr1.2:54374571-54374590	None:intergenic	55.0%
!!	GCTTGCTATCAGGGGAGATG+AGG	+	chr1.2:54374747-54374766	MS.gene50564:CDS	55.0%
	CGTTGCAGCGAAAACCACCG+CGG	+	chr1.2:54373504-54373523	MS.gene50564:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	54373478	54374861	54373478	ID=MS.gene50564
chr1.2	mRNA	54373478	54374861	54373478	ID=MS.gene50564.t1;Parent=MS.gene50564
chr1.2	exon	54373478	54373585	54373478	ID=MS.gene50564.t1.exon1;Parent=MS.gene50564.t1
chr1.2	CDS	54373478	54373585	54373478	ID=cds.MS.gene50564.t1;Parent=MS.gene50564.t1
chr1.2	exon	54374565	54374861	54374565	ID=MS.gene50564.t1.exon2;Parent=MS.gene50564.t1
chr1.2	CDS	54374565	54374861	54374565	ID=cds.MS.gene50564.t1;Parent=MS.gene50564.t1

Gene Sequence

>MS.gene50564

ATGGCAGGAAAAGGAGGAAAAGGACTCGTTGCAGCGAAAACCACCGCGGCTAACAAAGACAAGGACAAGAAGAAACCCACTTCTCGTTCTTCTCGTGCTGGAATTCAGGTAAAACCCTTTTTTTCCCTTTCTTCGTTTTTTCGATTTTCTTTATTTTTCTAGGGTTAGGGTTTGAAACAAGGAATTAGACGATAATTCTCATCTAGGGTTTGATTATATTGTTTTAATTTTTGCTAGATCTTTCACTTTCGATTTTTCTGTGTAAATTTTTTAGGGTTAGGGTTTGAAACAGAGATTTGAGCGATAGTTTTCAGATACCCATCTAGGGTTTAATTCTAAAGTTTTAATCTTTGCTAAATCTTTCAATTTCGCTTTCTTTCTATGTTCTTTAATTTTTTAGGGTTAGGGTTTGAAACAGAATTAAGCGATGGTTTTGGGAATACCCAATTGGGGGTTGATTATAAAGTTTTAATCTTTGATGTGTCTGTTTTTTTTCTTCCCCTGATAACATGTATTTTCTTGTTTATATCATATATGTGATGTGATACATGTTTTTGTTTTTTGATGAAAAATTCAACTAATTGCTTTCAGAGAGTAAACAATTTCAAGATCTTACAACTTCAATTCAAATTGAAGTTTTTTTTTTTTTTTTTTTGTGGAAATTCAAATTGAAGTTTTTAATTAACTTAGCTTGATTTTGTTGTAAATTGTAGCAGAGAAGTAATTTTTTGTTGGAATGTTATAAGTTTAATTTCGATTTAAGGTTATGTTAAAAGTTTACAGCGTTGAAGAAATCACACTGAATATTTGTAACTTTAGAATTAGTGTATGGTTATCAAAATGTTTTCAAACTTTAACAATTGTTGTGTAAAAAATCTTAACACTATTAGTGTATGGTTATCAAATGTCCTTTTATTTAACCGGAGAGCTGATTTTTGAGATTAAATTAATACCTTTGGATTTCATGTAGATGTTGTTTCCTGTTAATTATCATTTACAGATTAGAGAGACCCATTTTCCTCTGTTATTTTTGTTTTGTTAAGTAACTTTTGTTTATTAACTGTAAAATTTGCTATGGTGGTTGTAGTTTCCTGTGGGTAGGATCCACAGACAGCTGAAGCAAAGAGTCCAAGCTAATGGACGTGTCGGAGCAACAGCTGCAGTGTATTTGGCATCCATTCTGGAGTATCTGACTGCTGAAGTTCTTGAGCTGGCTGGAAATGCTAGCAAAGATTTGAAGGTGAAGAGGATTACACCAAGGCATTTGCAGCTTGCTATCAGGGGAGATGAGGAACTTGATACCCTTATCAAGGGAACAATTGCTGGTGGTGGTGTCATTCCTCACATCCACAAGTCCTTGATCAACAAAACTGCCAAAGAATGA

Protein sequence

>MS.gene50564.t1

MAGKGGKGLVAAKTTAANKDKDKKKPTSRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE