AlfalfaGEDB | MS.gene49359

M. sativa cultivar XinJiangDaYe / MS.gene49359

KEGG: K11251
GO: GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005634 GO:0032991 GO:0032993 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044815 GO:0046982 GO:0046983 GO:0097159 GO:0110165 GO:1901363
PFAM: PF00125.27 PF16211.8

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49359.t1	XP_003590550.1	100	134	0	0	1	134	1	134	8.80E-65	256.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49359.t1	Q8S857	90.6	139	8	2	1	134	1	139	4.3e-60	231.9

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49359.t1	G7ICP3	100.0	134	0	0	1	134	1	134	6.3e-65	256.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049190	MS.gene49359	0.836748	7.80E-57	-1.69E-46
MS.gene049328	MS.gene49359	0.819172	1.34E-52	-1.69E-46
MS.gene049341	MS.gene49359	0.822873	1.88E-53	-1.69E-46
MS.gene049711	MS.gene49359	0.807633	4.59E-50	-1.69E-46
MS.gene049821	MS.gene49359	0.821884	3.18E-53	-1.69E-46
MS.gene049850	MS.gene49359	0.847766	9.40E-60	-1.69E-46
MS.gene050020	MS.gene49359	0.853512	2.28E-61	-1.69E-46
MS.gene050241	MS.gene49359	0.800868	1.18E-48	-1.69E-46
MS.gene050630	MS.gene49359	0.803284	3.75E-49	-1.69E-46
MS.gene050807	MS.gene49359	0.819308	1.24E-52	-1.69E-46
MS.gene050808	MS.gene49359	0.800621	1.32E-48	-1.69E-46
MS.gene050901	MS.gene49359	0.817586	3.05E-52	-1.69E-46
MS.gene051199	MS.gene49359	0.80027	1.56E-48	-1.69E-46
MS.gene051279	MS.gene49359	0.80725	5.54E-50	-1.69E-46
MS.gene05157	MS.gene49359	0.881783	1.80E-70	-1.69E-46
MS.gene051719	MS.gene49359	0.846173	2.57E-59	-1.69E-46
MS.gene051720	MS.gene49359	0.867038	1.84E-65	-1.69E-46
MS.gene051744	MS.gene49359	0.8299	3.97E-55	-1.69E-46
MS.gene052020	MS.gene49359	0.810285	1.24E-50	-1.69E-46
MS.gene052133	MS.gene49359	0.86827	7.39E-66	-1.69E-46
MS.gene052516	MS.gene49359	0.824237	9.00E-54	-1.69E-46
MS.gene052611	MS.gene49359	0.807401	5.15E-50	-1.69E-46
MS.gene052665	MS.gene49359	0.837472	5.10E-57	-1.69E-46
MS.gene052732	MS.gene49359	0.837222	5.90E-57	-1.69E-46
MS.gene052879	MS.gene49359	0.824381	8.32E-54	-1.69E-46
MS.gene052880	MS.gene49359	0.815763	7.83E-52	-1.69E-46
MS.gene053122	MS.gene49359	0.815802	7.67E-52	-1.69E-46
MS.gene053144	MS.gene49359	0.856317	3.49E-62	-1.69E-46
MS.gene053174	MS.gene49359	0.814673	1.37E-51	-1.69E-46
MS.gene053226	MS.gene49359	0.831832	1.33E-55	-1.69E-46
MS.gene053581	MS.gene49359	0.853614	2.13E-61	-1.69E-46
MS.gene053599	MS.gene49359	0.845435	4.07E-59	-1.69E-46
MS.gene054550	MS.gene49359	0.821413	4.09E-53	-1.69E-46
MS.gene054584	MS.gene49359	0.865496	5.66E-65	-1.69E-46
MS.gene055465	MS.gene49359	0.862397	5.22E-64	-1.69E-46
MS.gene055466	MS.gene49359	0.862818	3.87E-64	-1.69E-46
MS.gene055468	MS.gene49359	0.852839	3.55E-61	-1.69E-46
MS.gene055469	MS.gene49359	0.805018	1.63E-49	-1.69E-46
MS.gene055512	MS.gene49359	0.832022	1.20E-55	-1.69E-46
MS.gene055537	MS.gene49359	0.841724	3.99E-58	-1.69E-46
MS.gene055580	MS.gene49359	-0.847954	8.34E-60	-1.69E-46
MS.gene055778	MS.gene49359	0.807842	4.15E-50	-1.69E-46
MS.gene055890	MS.gene49359	0.821074	4.90E-53	-1.69E-46
MS.gene055891	MS.gene49359	0.814238	1.71E-51	-1.69E-46
MS.gene056005	MS.gene49359	0.822876	1.87E-53	-1.69E-46
MS.gene056043	MS.gene49359	-0.819812	9.54E-53	-1.69E-46
MS.gene05608	MS.gene49359	0.815471	9.09E-52	-1.69E-46
MS.gene056228	MS.gene49359	0.828157	1.05E-54	-1.69E-46
MS.gene056308	MS.gene49359	0.801438	9.00E-49	-1.69E-46
MS.gene057314	MS.gene49359	0.819851	9.35E-53	-1.69E-46
MS.gene057915	MS.gene49359	0.831699	1.44E-55	-1.69E-46
MS.gene058087	MS.gene49359	0.804821	1.80E-49	-1.69E-46
MS.gene058216	MS.gene49359	0.83291	7.22E-56	-1.69E-46
MS.gene058625	MS.gene49359	0.810404	1.17E-50	-1.69E-46
MS.gene058668	MS.gene49359	0.804571	2.03E-49	-1.69E-46
MS.gene059015	MS.gene49359	0.817355	3.44E-52	-1.69E-46
MS.gene059154	MS.gene49359	0.811375	7.23E-51	-1.69E-46
MS.gene05978	MS.gene49359	0.820631	6.19E-53	-1.69E-46
MS.gene059937	MS.gene49359	0.802461	5.55E-49	-1.69E-46
MS.gene060194	MS.gene49359	0.823014	1.74E-53	-1.69E-46
MS.gene060429	MS.gene49359	0.815558	8.69E-52	-1.69E-46
MS.gene060519	MS.gene49359	0.834143	3.55E-56	-1.69E-46
MS.gene060587	MS.gene49359	0.854691	1.04E-61	-1.69E-46
MS.gene060884	MS.gene49359	0.810676	1.02E-50	-1.69E-46
MS.gene060886	MS.gene49359	0.811689	6.17E-51	-1.69E-46
MS.gene061176	MS.gene49359	0.805078	1.59E-49	-1.69E-46
MS.gene061177	MS.gene49359	0.804849	1.77E-49	-1.69E-46
MS.gene061178	MS.gene49359	0.804747	1.86E-49	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene76254	MS.gene49359	PPI
MS.gene065078	MS.gene49359	PPI
MS.gene029348	MS.gene49359	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49359.t1	MTR_1g071040	100.000	134	0	0	1	134	1	134	1.08e-93	266
MS.gene49359.t1	MTR_1g114050	91.473	129	11	0	6	134	3	131	5.70e-82	236
MS.gene49359.t1	MTR_1g011750	86.567	134	18	0	1	134	1	134	1.01e-79	231
MS.gene49359.t1	MTR_1g011850	86.567	134	18	0	1	134	1	134	1.01e-79	231
MS.gene49359.t1	MTR_4g048490	67.910	134	14	1	1	134	1	105	1.86e-47	149
MS.gene49359.t1	MTR_7g027610	67.213	122	14	2	13	134	3	98	5.87e-44	140
MS.gene49359.t1	MTR_2g082510	64.545	110	37	2	24	132	14	122	1.02e-39	130
MS.gene49359.t1	MTR_2g082220	64.545	110	37	2	24	132	14	122	1.22e-39	129
MS.gene49359.t1	MTR_7g108320	59.016	122	47	3	11	130	6	126	2.72e-39	129
MS.gene49359.t1	MTR_7g114060	59.664	119	45	3	14	130	6	123	1.44e-38	127
MS.gene49359.t1	MTR_7g114040	59.664	119	45	3	14	130	6	123	1.44e-38	127
MS.gene49359.t1	MTR_7g093910	55.118	127	50	3	10	130	1	126	5.28e-38	126
MS.gene49359.t1	MTR_2g096610	60.550	109	41	2	23	130	19	126	3.48e-36	121
MS.gene49359.t1	MTR_0653s0030	61.111	108	17	1	5	112	15	97	4.60e-36	121
MS.gene49359.t1	MTR_7g113160	55.752	113	48	2	19	130	19	130	5.97e-36	120
MS.gene49359.t1	MTR_4g063280	60.550	109	41	2	23	130	15	122	1.83e-35	119
MS.gene49359.t1	MTR_4g071150	62.500	104	37	2	28	130	26	128	8.63e-35	118
MS.gene49359.t1	MTR_4g064967	60.952	105	39	2	27	130	25	128	1.30e-34	117
MS.gene49359.t1	MTR_2g096570	60.952	105	39	2	27	130	24	127	1.80e-34	117
MS.gene49359.t1	MTR_4g064005	61.538	104	38	2	28	130	26	128	1.86e-34	117
MS.gene49359.t1	MTR_8g086640	58.716	109	43	2	27	134	25	132	2.56e-34	117
MS.gene49359.t1	MTR_4g063410	60.000	105	40	2	27	130	25	128	5.83e-34	115
MS.gene49359.t1	MTR_7g114050	49.593	123	48	5	10	130	4	114	6.31e-27	97.4
MS.gene49359.t1	MTR_4g063300	62.687	67	24	1	55	120	17	83	1.66e-20	80.9
MS.gene49359.t1	MTR_6g005150	45.283	106	47	4	27	130	27	123	3.00e-19	78.2
MS.gene49359.t1	MTR_7g427690	78.947	38	8	0	96	133	412	449	3.05e-12	62.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49359.t1	AT3G54560	91.912	136	9	1	1	134	1	136	5.04e-79	229
MS.gene49359.t1	AT3G54560	91.912	136	9	1	1	134	1	136	5.04e-79	229
MS.gene49359.t1	AT2G38810	89.706	136	12	1	1	134	1	136	8.18e-77	224
MS.gene49359.t1	AT2G38810	89.706	136	12	1	1	134	1	136	8.18e-77	224
MS.gene49359.t1	AT2G38810	89.706	136	12	1	1	134	1	136	8.18e-77	224
MS.gene49359.t1	AT2G38810	89.706	136	12	1	1	134	1	136	8.18e-77	224
MS.gene49359.t1	AT1G52740	82.836	134	23	0	1	134	1	134	2.06e-71	210
MS.gene49359.t1	AT4G13570	78.022	91	20	0	34	124	28	118	3.18e-47	148
MS.gene49359.t1	AT4G13570	78.889	90	19	0	35	124	35	124	6.47e-47	148
MS.gene49359.t1	AT3G20670	64.545	110	37	2	24	132	14	122	6.35e-40	130
MS.gene49359.t1	AT4G27230	64.545	110	37	2	24	132	14	122	1.04e-39	130
MS.gene49359.t1	AT4G27230	64.545	110	37	2	24	132	14	122	1.04e-39	130
MS.gene49359.t1	AT5G54640	64.545	110	37	2	24	132	14	122	1.13e-39	130
MS.gene49359.t1	AT1G51060	63.889	108	37	2	24	130	14	120	4.16e-39	128
MS.gene49359.t1	AT5G02560	60.177	113	43	2	23	134	21	132	1.12e-38	128
MS.gene49359.t1	AT1G08880	59.829	117	44	3	14	128	9	124	1.56e-38	127
MS.gene49359.t1	AT1G54690	59.829	117	44	3	14	128	9	124	1.94e-38	127
MS.gene49359.t1	AT5G27670	60.177	113	43	2	19	130	18	129	9.18e-37	123
MS.gene49359.t1	AT5G59870	59.633	109	42	2	23	130	21	128	7.33e-35	118
MS.gene49359.t1	AT5G02560	49.635	137	43	3	23	134	21	156	2.88e-33	115

Find 42 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGCATTTGCAGCTTGCTATC+AGG	0.247896	1.1:+53364613	MS.gene49359:CDS
AGCAACAGCTGCAGTGTATT+TGG	0.282329	1.1:+53364503	MS.gene49359:CDS
TTCTTCTCGTGCTGGAATTC+AGG	0.284428	1.1:+53363456	MS.gene49359:CDS
AAAGCAAAGAATTCATTCTT+TGG	0.314617	1.1:-53364727	None:intergenic
AGTGTATTTGGCATCCATTC+TGG	0.360664	1.1:+53364515	MS.gene49359:CDS
CAGCAATTGTTCCCTTGATA+AGG	0.371937	1.1:-53364656	None:intergenic
CTTATCAAGGGAACAATTGC+TGG	0.372156	1.1:+53364657	MS.gene49359:CDS
CTCCGACACGTCCATTAGCT+TGG	0.422586	1.1:-53364482	None:intergenic
AGCAATTGTTCCCTTGATAA+GGG	0.441041	1.1:-53364655	None:intergenic
AAGCAAAGAGTCCAAGCTAA+TGG	0.447447	1.1:+53364471	MS.gene49359:CDS
ACTTCTCGTTCTTCTCGTGC+TGG	0.468244	1.1:+53363448	MS.gene49359:CDS
AAATGCTAGCAAAGATTTGA+AGG	0.477120	1.1:+53364572	MS.gene49359:CDS
GACTGCTGAAGTTCTTGAGC+TGG	0.480553	1.1:+53364545	MS.gene49359:CDS
CTCTTTGCTTCAGCTGTCTG+TGG	0.485476	1.1:-53364458	None:intergenic
GCATTTGCAGCTTGCTATCA+GGG	0.487874	1.1:+53364614	MS.gene49359:CDS
GCTGAAGTTCTTGAGCTGGC+TGG	0.490963	1.1:+53364549	MS.gene49359:CDS
TCAGGTGATTAAGCAATGGC+AGG	0.495436	1.1:+53363355	None:intergenic
ATGGCAGGAAAAGGAGGAAA+AGG	0.512104	1.1:+53363370	MS.gene49359:CDS
GGAACTTGATACCCTTATCA+AGG	0.512125	1.1:+53364644	MS.gene49359:CDS
GATTAAGCAATGGCAGGAAA+AGG	0.523608	1.1:+53363361	None:intergenic
CTTGTCTTTGTTAGCCGCGG+TGG	0.527714	1.1:-53363410	None:intergenic
GTCCTTGTCTTTGTTAGCCG+CGG	0.546728	1.1:-53363413	None:intergenic
GCAAAGATTTGAAGGTGAAG+AGG	0.563947	1.1:+53364580	MS.gene49359:CDS
TGGTGGTTGTAGTTTCCTGT+GGG	0.573166	1.1:+53364429	MS.gene49359:intron
ATGGTGGTTGTAGTTTCCTG+TGG	0.574055	1.1:+53364428	MS.gene49359:intron
GGTTGTAGTTTCCTGTGGGT+AGG	0.590033	1.1:+53364433	MS.gene49359:intron
AGCAGTCAGATACTCCAGAA+TGG	0.591746	1.1:-53364529	None:intergenic
ATAGCAAGCTGCAAATGCCT+TGG	0.592261	1.1:-53364609	None:intergenic
GCTTGCTATCAGGGGAGATG+AGG	0.593400	1.1:+53364623	MS.gene49359:CDS
GTCCAAGCTAATGGACGTGT+CGG	0.596665	1.1:+53364480	MS.gene49359:CDS
TAAGCAATGGCAGGAAAAGG+AGG	0.606722	1.1:+53363364	None:intergenic
AGCACGAGAAGAACGAGAAG+TGG	0.609010	1.1:-53363446	None:intergenic
CATTTGCAGCTTGCTATCAG+GGG	0.612353	1.1:+53364615	MS.gene49359:CDS
AAGGGAACAATTGCTGGTGG+TGG	0.621502	1.1:+53364663	MS.gene49359:CDS
GAACTTGATACCCTTATCAA+GGG	0.630061	1.1:+53364645	MS.gene49359:CDS
ATCAAGGACTTGTGGATGTG+AGG	0.631787	1.1:-53364693	None:intergenic
GCACGAGAAGAACGAGAAGT+GGG	0.642443	1.1:-53363445	None:intergenic
CACCGCGGCTAACAAAGACA+AGG	0.646788	1.1:+53363411	MS.gene49359:CDS
TGTCTGTGGATCCTACCCAC+AGG	0.647982	1.1:-53364444	None:intergenic
ATCAAGGGAACAATTGCTGG+TGG	0.659902	1.1:+53364660	MS.gene49359:CDS
AGGTGAAGAGGATTACACCA+AGG	0.739394	1.1:+53364592	MS.gene49359:CDS
CGTTGCAGCGAAAACCACCG+CGG	0.789660	1.1:+53363396	MS.gene49359:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATAAGTTTAATTTCGATTTA+AGG	+	chr1.1:53364095-53364114	MS.gene49359:intron	15.0%
!!!	CTATGTTCTTTAATTTTTTA+GGG	+	chr1.1:53363731-53363750	MS.gene49359:intron	15.0%
!!!	TCGATTTTCTTTATTTTTTA+GGG	+	chr1.1:53363510-53363529	MS.gene49359:intron	15.0%
!!!	TCTATGTTCTTTAATTTTTT+AGG	+	chr1.1:53363730-53363749	MS.gene49359:intron	15.0%
!!!	TTCGATTTTCTTTATTTTTT+AGG	+	chr1.1:53363509-53363528	MS.gene49359:intron	15.0%
!!!	TTTTCTGTGTAAATTTTTTA+GGG	+	chr1.1:53363622-53363641	MS.gene49359:intron	15.0%
!!!	TTTTTCTGTGTAAATTTTTT+AGG	+	chr1.1:53363621-53363640	MS.gene49359:intron	15.0%
!!	ATCTGTAAATGATAATTAAC+AGG	-	chr1.1:53364336-53364355	None:intergenic	20.0%
!!	TAACAAAACAAAAATAACAG+AGG	-	chr1.1:53364375-53364394	None:intergenic	20.0%
!!	TTAGCAAAGATTAAAACTAT+GGG	-	chr1.1:53363689-53363708	None:intergenic	20.0%
!!	TTTAGCAAAGATTAAAACTA+TGG	-	chr1.1:53363690-53363709	None:intergenic	20.0%
!!!	ATTAACTGTAAAATTTGCTA+TGG	+	chr1.1:53364409-53364428	MS.gene49359:intron	20.0%
!!!	TCTTTAATTTTTTAGGGTTA+GGG	+	chr1.1:53363737-53363756	MS.gene49359:intron	20.0%
!!!	TTCTTTAATTTTTTAGGGTT+AGG	+	chr1.1:53363736-53363755	MS.gene49359:intron	20.0%
!!!	TTCTTTATTTTTTAGGGTTA+GGG	+	chr1.1:53363516-53363535	MS.gene49359:intron	20.0%
!!!	TTTCTTTATTTTTTAGGGTT+AGG	+	chr1.1:53363515-53363534	MS.gene49359:intron	20.0%
!	AAAATCGAAAAAACGAAGAA+AGG	-	chr1.1:53363498-53363517	None:intergenic	25.0%
!	AAATCGAAAAAACGAAGAAA+GGG	-	chr1.1:53363497-53363516	None:intergenic	25.0%
!	AAGAAAATACATGTTATCAG+GGG	-	chr1.1:53363853-53363872	None:intergenic	25.0%
!	ACAAAAATAACAGAGGAAAA+TGG	-	chr1.1:53364368-53364387	None:intergenic	25.0%
!	ACAAGAAAATACATGTTATC+AGG	-	chr1.1:53363855-53363874	None:intergenic	25.0%
!	ATCTTAACACTATTAGTGTA+TGG	+	chr1.1:53364228-53364247	MS.gene49359:intron	25.0%
!	CAAAAATAACAGAGGAAAAT+GGG	-	chr1.1:53364367-53364386	None:intergenic	25.0%
!	CAAGAAAATACATGTTATCA+GGG	-	chr1.1:53363854-53363873	None:intergenic	25.0%
!	TGAGATTATATTATTGCCTT+TGG	+	chr1.1:53364290-53364309	MS.gene49359:intron	25.0%
!!!	CAAATGTCCTTTTATTTAAC+CGG	+	chr1.1:53364255-53364274	MS.gene49359:intron	25.0%
!!!	GTAACTTTAGAATTAGTGTA+TGG	+	chr1.1:53364163-53364182	MS.gene49359:intron	25.0%
!!!	GTGTAAATTTTTTAGGGTTA+GGG	+	chr1.1:53363628-53363647	MS.gene49359:intron	25.0%
!!!	TGTGTAAATTTTTTAGGGTT+AGG	+	chr1.1:53363627-53363646	MS.gene49359:intron	25.0%
	AAATGCTAGCAAAGATTTGA+AGG	+	chr1.1:53364572-53364591	MS.gene49359:CDS	30.0%
	AACATCTACATGAAATCCAA+AGG	-	chr1.1:53364309-53364328	None:intergenic	30.0%
	AATCGAAAAAACGAAGAAAG+GGG	-	chr1.1:53363496-53363515	None:intergenic	30.0%
	TAGACGATAATTCTCATCTA+GGG	+	chr1.1:53363554-53363573	MS.gene49359:intron	30.0%
	TTAGACGATAATTCTCATCT+AGG	+	chr1.1:53363553-53363572	MS.gene49359:intron	30.0%
	TTTATAATCAACCCCCAATT+GGG	-	chr1.1:53363796-53363815	None:intergenic	30.0%
!	TTTGAAACAGAATTAAGCGA+TGG	+	chr1.1:53363760-53363779	MS.gene49359:intron	30.0%
!!	AACTGTAAAATTTGCTATGG+TGG	+	chr1.1:53364412-53364431	MS.gene49359:intron	30.0%
!!!	GCAGAGAAGTAATTTTTTGT+TGG	+	chr1.1:53364066-53364085	MS.gene49359:intron	30.0%
	AAACGAAGAAAGGGGAAAAA+AGG	-	chr1.1:53363488-53363507	None:intergenic	35.0%
	AACGAAGAAAGGGGAAAAAA+GGG	-	chr1.1:53363487-53363506	None:intergenic	35.0%
	AATCTCAAAAATCAGCTCTC+CGG	-	chr1.1:53364277-53364296	None:intergenic	35.0%
	AGCAATTGTTCCCTTGATAA+GGG	-	chr1.1:53364658-53364677	None:intergenic	35.0%
	CTTTATAATCAACCCCCAAT+TGG	-	chr1.1:53363797-53363816	None:intergenic	35.0%
	GAACTTGATACCCTTATCAA+GGG	+	chr1.1:53364645-53364664	MS.gene49359:CDS	35.0%
!	ACAGAATTAAGCGATGGTTT+TGG	+	chr1.1:53363766-53363785	MS.gene49359:intron	35.0%
!	CAGAATTAAGCGATGGTTTT+GGG	+	chr1.1:53363767-53363786	MS.gene49359:intron	35.0%
!	TTTTGTTGATCAAGGACTTG+TGG	-	chr1.1:53364704-53364723	None:intergenic	35.0%
!!!	TTTGGCAGTTTTGTTGATCA+AGG	-	chr1.1:53364712-53364731	None:intergenic	35.0%
	AAGCAAAGAGTCCAAGCTAA+TGG	+	chr1.1:53364471-53364490	MS.gene49359:CDS	40.0%
	AGTGTATTTGGCATCCATTC+TGG	+	chr1.1:53364515-53364534	MS.gene49359:CDS	40.0%
	CAGCAATTGTTCCCTTGATA+AGG	-	chr1.1:53364659-53364678	None:intergenic	40.0%
	CAGCTCTCCGGTTAAATAAA+AGG	-	chr1.1:53364265-53364284	None:intergenic	40.0%
	CTTATCAAGGGAACAATTGC+TGG	+	chr1.1:53364657-53364676	MS.gene49359:CDS	40.0%
	GCAAAGATTTGAAGGTGAAG+AGG	+	chr1.1:53364580-53364599	MS.gene49359:CDS	40.0%
	GGAACTTGATACCCTTATCA+AGG	+	chr1.1:53364644-53364663	MS.gene49359:CDS	40.0%
!	TAGGGTTAGGGTTTGAAACA+AGG	+	chr1.1:53363528-53363547	MS.gene49359:intron	40.0%
!!!	ATGGTTTTGGGATACCCAAT+TGG	+	chr1.1:53363779-53363798	MS.gene49359:intron	40.0%
!!!	TGGTTTTGGGATACCCAATT+GGG	+	chr1.1:53363780-53363799	MS.gene49359:intron	40.0%
	AGCAACAGCTGCAGTGTATT+TGG	+	chr1.1:53364503-53364522	MS.gene49359:CDS	45.0%
	AGCAGTCAGATACTCCAGAA+TGG	-	chr1.1:53364532-53364551	None:intergenic	45.0%
	AGGTGAAGAGGATTACACCA+AGG	+	chr1.1:53364592-53364611	MS.gene49359:CDS	45.0%
	ATAGCAAGCTGCAAATGCCT+TGG	-	chr1.1:53364612-53364631	None:intergenic	45.0%
	ATCAAGGACTTGTGGATGTG+AGG	-	chr1.1:53364696-53364715	None:intergenic	45.0%
	ATCAAGGGAACAATTGCTGG+TGG	+	chr1.1:53364660-53364679	MS.gene49359:CDS	45.0%
	ATGGCAGGAAAAGGAGGAAA+AGG	+	chr1.1:53363370-53363389	MS.gene49359:CDS	45.0%
	ATGGTGGTTGTAGTTTCCTG+TGG	+	chr1.1:53364428-53364447	MS.gene49359:intron	45.0%
	TGGTGGTTGTAGTTTCCTGT+GGG	+	chr1.1:53364429-53364448	MS.gene49359:intron	45.0%
	TTCTTCTCGTGCTGGAATTC+AGG	+	chr1.1:53363456-53363475	MS.gene49359:CDS	45.0%
!!	CATTTGCAGCTTGCTATCAG+GGG	+	chr1.1:53364615-53364634	MS.gene49359:CDS	45.0%
!!	GCATTTGCAGCTTGCTATCA+GGG	+	chr1.1:53364614-53364633	MS.gene49359:CDS	45.0%
!!!	GGTTTTGGGATACCCAATTG+GGG	+	chr1.1:53363781-53363800	MS.gene49359:intron	45.0%
!!!	GTTTTGGGATACCCAATTGG+GGG	+	chr1.1:53363782-53363801	MS.gene49359:intron	45.0%
!!!	TTTTTTTTTTTTTTTTTTTG+TGG	+	chr1.1:53363990-53364009	MS.gene49359:intron	5.0%
	AAGGGAACAATTGCTGGTGG+TGG	+	chr1.1:53364663-53364682	MS.gene49359:CDS	50.0%
	ACTTCTCGTTCTTCTCGTGC+TGG	+	chr1.1:53363448-53363467	MS.gene49359:CDS	50.0%
	AGCACGAGAAGAACGAGAAG+TGG	-	chr1.1:53363449-53363468	None:intergenic	50.0%
	CTCTTTGCTTCAGCTGTCTG+TGG	-	chr1.1:53364461-53364480	None:intergenic	50.0%
	GACTGCTGAAGTTCTTGAGC+TGG	+	chr1.1:53364545-53364564	MS.gene49359:CDS	50.0%
	GCACGAGAAGAACGAGAAGT+GGG	-	chr1.1:53363448-53363467	None:intergenic	50.0%
	GGTTGTAGTTTCCTGTGGGT+AGG	+	chr1.1:53364433-53364452	MS.gene49359:intron	50.0%
	GTCCTTGTCTTTGTTAGCCG+CGG	-	chr1.1:53363416-53363435	None:intergenic	50.0%
!	GTCCAAGCTAATGGACGTGT+CGG	+	chr1.1:53364480-53364499	MS.gene49359:CDS	50.0%
!!	GGCATTTGCAGCTTGCTATC+AGG	+	chr1.1:53364613-53364632	MS.gene49359:CDS	50.0%
	CACCGCGGCTAACAAAGACA+AGG	+	chr1.1:53363411-53363430	MS.gene49359:CDS	55.0%
	CTCCGACACGTCCATTAGCT+TGG	-	chr1.1:53364485-53364504	None:intergenic	55.0%
	CTTGTCTTTGTTAGCCGCGG+TGG	-	chr1.1:53363413-53363432	None:intergenic	55.0%
	GCTGAAGTTCTTGAGCTGGC+TGG	+	chr1.1:53364549-53364568	MS.gene49359:CDS	55.0%
	TGTCTGTGGATCCTACCCAC+AGG	-	chr1.1:53364447-53364466	None:intergenic	55.0%
!!	GCTTGCTATCAGGGGAGATG+AGG	+	chr1.1:53364623-53364642	MS.gene49359:CDS	55.0%
	CGTTGCAGCGAAAACCACCG+CGG	+	chr1.1:53363396-53363415	MS.gene49359:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	53363370	53364737	53363370	ID=MS.gene49359
chr1.1	mRNA	53363370	53364737	53363370	ID=MS.gene49359.t1;Parent=MS.gene49359
chr1.1	exon	53363370	53363477	53363370	ID=MS.gene49359.t1.exon1;Parent=MS.gene49359.t1
chr1.1	CDS	53363370	53363477	53363370	ID=cds.MS.gene49359.t1;Parent=MS.gene49359.t1
chr1.1	exon	53364441	53364737	53364441	ID=MS.gene49359.t1.exon2;Parent=MS.gene49359.t1
chr1.1	CDS	53364441	53364737	53364441	ID=cds.MS.gene49359.t1;Parent=MS.gene49359.t1

Gene Sequence

>MS.gene49359

ATGGCAGGAAAAGGAGGAAAAGGACTCGTTGCAGCGAAAACCACCGCGGCTAACAAAGACAAGGACAAGAAGAAACCCACTTCTCGTTCTTCTCGTGCTGGAATTCAGGTAAAACCCTTTTTTCCCCTTTCTTCGTTTTTTCGATTTTCTTTATTTTTTAGGGTTAGGGTTTGAAACAAGGAATTAGACGATAATTCTCATCTAGGGTTTGATTATATTGTTTTAATTTTTGCTAGATCTTTCACTTTCGATTTTTCTGTGTAAATTTTTTAGGGTTAGGGTTTGAAACAGAGATTTGAGCGATAGTTTTCAGATACCCATAGTTTTAATCTTTGCTAAATCTTTCAATTTCGCTTTCTTTCTATGTTCTTTAATTTTTTAGGGTTAGGGTTTGAAACAGAATTAAGCGATGGTTTTGGGATACCCAATTGGGGGTTGATTATAAAGTTTTAATCTTTGATGTGTCTGTTTTTTTTTCTTCCCCTGATAACATGTATTTTCTTGTTTATATCATATATGTGATGTGATACATGTTTTTGTTTTTTGATGAAAAATTCAACTAATTGCTTTCAGAGAGTAAACAATTTCAAGATCTTACAACTTCAATTCAAATTGAGTTTTTTTTTTTTTTTTTTTTTTGTGGAAATTCAAATTAAAGTTTTTAATTAACTTAGCTTGATTTTGTTGTAAATTGTAGCAGAGAAGTAATTTTTTGTTGGAATGTTATAAGTTTAATTTCGATTTAAGGTTATGTTAAAAGTTTACAGCGTTGAAGAAATCACACTGAATATTTGTAACTTTAGAATTAGTGTATGGTTATCAAAATGTTTTCAAACTTTAACAATTGTTGTGTAAAAAATCTTAACACTATTAGTGTATGGTTATCAAATGTCCTTTTATTTAACCGGAGAGCTGATTTTTGAGATTATATTATTGCCTTTGGATTTCATGTAGATGTTGTTTCCTGTTAATTATCATTTACAGATTAGAGAGACCCATTTTCCTCTGTTATTTTTGTTTTGTTAAGTAACTTTTGTTTATTAACTGTAAAATTTGCTATGGTGGTTGTAGTTTCCTGTGGGTAGGATCCACAGACAGCTGAAGCAAAGAGTCCAAGCTAATGGACGTGTCGGAGCAACAGCTGCAGTGTATTTGGCATCCATTCTGGAGTATCTGACTGCTGAAGTTCTTGAGCTGGCTGGAAATGCTAGCAAAGATTTGAAGGTGAAGAGGATTACACCAAGGCATTTGCAGCTTGCTATCAGGGGAGATGAGGAACTTGATACCCTTATCAAGGGAACAATTGCTGGTGGTGGTGTCATTCCTCACATCCACAAGTCCTTGATCAACAAAACTGCCAAAGAATGA

Protein sequence

>MS.gene49359.t1

MAGKGGKGLVAAKTTAANKDKDKKKPTSRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE