Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065179.t1 | XP_013464735.1 | 93 | 417 | 27 | 1 | 1 | 415 | 1 | 417 | 1.50E-227 | 798.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065179.t1 | F4IEM5 | 68.2 | 415 | 127 | 1 | 1 | 415 | 1 | 410 | 1.4e-165 | 583.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065179.t1 | A0A072VKU4 | 93.0 | 417 | 27 | 1 | 1 | 415 | 1 | 417 | 1.1e-227 | 798.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055358 | MS.gene065179 | 0.812032 | 5.20E-51 | -1.69E-46 |
MS.gene056498 | MS.gene065179 | 0.807974 | 3.89E-50 | -1.69E-46 |
MS.gene057060 | MS.gene065179 | 0.835772 | 1.38E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene065179 | MS.gene045143 | PPI |
MS.gene065179 | MS.gene84700 | PPI |
MS.gene065179 | MS.gene79098 | PPI |
MS.gene065179 | MS.gene98661 | PPI |
MS.gene065179 | MS.gene84419 | PPI |
MS.gene065179 | MS.gene068489 | PPI |
MS.gene065179 | MS.gene75502 | PPI |
MS.gene065179 | MS.gene073261 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065179.t1 | MTR_2g079700 | 93.046 | 417 | 27 | 1 | 1 | 415 | 1 | 417 | 0.0 | 786 |
MS.gene065179.t1 | MTR_6g007490 | 65.468 | 417 | 142 | 2 | 1 | 415 | 25 | 441 | 0.0 | 587 |
MS.gene065179.t1 | MTR_6g007490 | 61.889 | 307 | 115 | 2 | 1 | 305 | 25 | 331 | 6.67e-142 | 408 |
MS.gene065179.t1 | MTR_3g086910 | 48.974 | 390 | 178 | 7 | 41 | 415 | 32 | 415 | 7.81e-118 | 350 |
MS.gene065179.t1 | MTR_3g086910 | 46.595 | 279 | 129 | 6 | 41 | 305 | 32 | 304 | 1.69e-73 | 233 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065179.t1 | AT1G52920 | 68.193 | 415 | 127 | 1 | 1 | 415 | 1 | 410 | 0.0 | 591 |
MS.gene065179.t1 | AT2G20770 | 63.221 | 416 | 141 | 3 | 1 | 415 | 1 | 405 | 0.0 | 550 |
MS.gene065179.t1 | AT5G65280 | 45.088 | 397 | 191 | 8 | 41 | 415 | 42 | 433 | 2.19e-112 | 336 |
MS.gene065179.t1 | AT5G65280 | 47.573 | 309 | 147 | 5 | 121 | 415 | 4 | 311 | 6.44e-97 | 293 |
Find 114 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACGCTTTACACGGCGGTTCT+TGG | 0.238896 | 2.4:-17940658 | MS.gene065179:CDS |
ACTAAGATCATCCACATTCT+TGG | 0.288609 | 2.4:+17940600 | None:intergenic |
ATACCTCTTTGAATTGTCTA+AGG | 0.293167 | 2.4:+17939689 | None:intergenic |
AGACCTTCGAATAAGGAATA+AGG | 0.296203 | 2.4:+17938543 | None:intergenic |
CATCCACATTCTTGGTTACT+TGG | 0.297066 | 2.4:+17940608 | None:intergenic |
ATGGCAGAACAGGTTACTTA+TGG | 0.303883 | 2.4:-17939523 | MS.gene065179:CDS |
TCCTCCAAGACCTTCGAATA+AGG | 0.318685 | 2.4:+17938536 | None:intergenic |
GGTGCTGCTCATGGACTTGC+AGG | 0.320322 | 2.4:-17939244 | MS.gene065179:CDS |
CGTGCCGGTGTTTGTGCTCT+TGG | 0.351585 | 2.4:-17939760 | MS.gene065179:CDS |
CTCCTCCATGCATCTTTCCT+TGG | 0.360360 | 2.4:+17938571 | None:intergenic |
TTGACATCTTCCACCTCATC+TGG | 0.364253 | 2.4:+17939187 | None:intergenic |
TATTCCTTATTCGAAGGTCT+TGG | 0.377583 | 2.4:-17938540 | MS.gene065179:CDS |
CATTGGTGTCACGGTGCTCC+TGG | 0.378975 | 2.4:-17939079 | MS.gene065179:CDS |
AATGGCATGGGAAGAAATAC+TGG | 0.383288 | 2.4:-17939267 | MS.gene065179:CDS |
GAGTTATTGTATGGCAGAAC+AGG | 0.390773 | 2.4:-17939533 | MS.gene065179:CDS |
CCACAAGTGGCTAGGTTCCC+TGG | 0.391353 | 2.4:-17938483 | MS.gene065179:CDS |
TGTTCTTCAAGTGTTGTCTC+TGG | 0.397728 | 2.4:+17941269 | None:intergenic |
AGCACTTCACTTCAAACAAT+TGG | 0.406303 | 2.4:-17941147 | MS.gene065179:intron |
CAGGAGAAGTAGTGTGGAAG+AGG | 0.407282 | 2.4:-17938746 | MS.gene065179:CDS |
GGTTCTTGGAACGGCATACT+TGG | 0.415147 | 2.4:-17940644 | MS.gene065179:CDS |
GTTATAACTTCATCCACAAT+TGG | 0.424250 | 2.4:+17939337 | None:intergenic |
GTCAGATTCACTTCCTTCAC+TGG | 0.425272 | 2.4:+17939111 | None:intergenic |
CTTTCTCTGTACAGATTGAC+AGG | 0.431846 | 2.4:-17938666 | MS.gene065179:CDS |
TGGCAGAACAGGTTACTTAT+GGG | 0.432303 | 2.4:-17939522 | MS.gene065179:CDS |
TCATTCTTAAACAAGCATAT+CGG | 0.434369 | 2.4:-17939494 | MS.gene065179:CDS |
TATACCTTTCTAGACATGAT+TGG | 0.445743 | 2.4:-17938507 | MS.gene065179:CDS |
ATTCTGCTTCAGCAAATTCA+AGG | 0.460631 | 2.4:-17940549 | MS.gene065179:intron |
GACCTTCGAATAAGGAATAA+GGG | 0.464630 | 2.4:+17938544 | None:intergenic |
TCTGCCATACAATAACTCAT+AGG | 0.466009 | 2.4:+17939538 | None:intergenic |
GTGTTTGGTAAGGTAGAGAA+AGG | 0.471162 | 2.4:+17941192 | None:intergenic |
TCCTTATTCGAAGGTCTTGG+AGG | 0.474374 | 2.4:-17938537 | MS.gene065179:CDS |
AAATACTGGGGTGCTGCTCA+TGG | 0.483810 | 2.4:-17939253 | MS.gene065179:CDS |
CGCCCTTATTCCTTATTCGA+AGG | 0.485112 | 2.4:-17938546 | MS.gene065179:CDS |
TTTATGCTTGAAGATTGTTA+AGG | 0.488334 | 2.4:-17940578 | MS.gene065179:CDS |
GAGGTGAGAGAGTGTGGTGT+TGG | 0.490011 | 2.4:+17941218 | None:intergenic |
ATGCCTTACCGTGTAGGTAG+TGG | 0.491158 | 2.4:+17939457 | None:intergenic |
TAAGGTGGTGAGTGAGACAT+GGG | 0.495816 | 2.4:-17940710 | MS.gene065179:intron |
AGGGGTCTTCTTAAGCGAGT+TGG | 0.504459 | 2.4:-17938726 | MS.gene065179:CDS |
GAGTACTTGTACAGGGCTAA+AGG | 0.505457 | 2.4:-17938636 | MS.gene065179:CDS |
TCGCAAGCAGCGGAAGATGC+AGG | 0.507394 | 2.4:-17938765 | MS.gene065179:CDS |
AGTGTTGTCTCTGGCATGAA+TGG | 0.507407 | 2.4:+17941278 | None:intergenic |
TTGCCCTATGAGTTATTGTA+TGG | 0.507703 | 2.4:-17939542 | MS.gene065179:CDS |
AGGAGTGAGGTGAGAGAGTG+TGG | 0.508542 | 2.4:+17941212 | None:intergenic |
GTGACTCAAAGTTCATAGCC+AGG | 0.511069 | 2.4:+17938465 | None:intergenic |
TTTGAGGTGAGTGTTTGGTA+AGG | 0.514421 | 2.4:+17941182 | None:intergenic |
CAAGAGCACAAACACCGGCA+CGG | 0.514774 | 2.4:+17939761 | None:intergenic |
GAAACAAGGAGTACTTGTAC+AGG | 0.518932 | 2.4:-17938644 | MS.gene065179:CDS |
CGTCTTGTGCATTGGTGTCA+CGG | 0.521333 | 2.4:-17939088 | MS.gene065179:CDS |
TTACACGGCGGTTCTTGGAA+CGG | 0.521411 | 2.4:-17940653 | MS.gene065179:CDS |
TGGACCAATCATGTCTAGAA+AGG | 0.522222 | 2.4:+17938503 | None:intergenic |
ATGAATGGTGGCAAGTTGTT+CGG | 0.523714 | 2.4:+17941293 | None:intergenic |
GTGGATGAAGTTATAACAGC+TGG | 0.524603 | 2.4:-17939331 | MS.gene065179:CDS |
TGGTGTTGGTGTTTGAGAAG+AGG | 0.528091 | 2.4:+17941232 | None:intergenic |
ACGTTCATCTGTGGCCGTGC+CGG | 0.530658 | 2.4:-17939775 | MS.gene065179:CDS |
CTGCCATACAATAACTCATA+GGG | 0.530788 | 2.4:+17939539 | None:intergenic |
ATTCGAAGGTCTTGGAGGAA+TGG | 0.532742 | 2.4:-17938532 | MS.gene065179:CDS |
GGAATTTGCCACGGCATCAG+TGG | 0.534765 | 2.4:-17938705 | MS.gene065179:CDS |
GGCAATTATCCCTCCAGTGA+AGG | 0.536493 | 2.4:-17939124 | MS.gene065179:CDS |
GATGTCCTTTGATGTATGAA+TGG | 0.539425 | 2.4:-17939285 | MS.gene065179:CDS |
AGCACCAAGAGCACAAACAC+CGG | 0.540687 | 2.4:+17939756 | None:intergenic |
TTAAGGTGGTGAGTGAGACA+TGG | 0.547872 | 2.4:-17940711 | MS.gene065179:intron |
AGATGAGGTGGAAGATGTCA+AGG | 0.556890 | 2.4:-17939185 | MS.gene065179:CDS |
AGTGAGACATGGGGTTCTAG+TGG | 0.556968 | 2.4:-17940700 | MS.gene065179:CDS |
AACTCATAGGGCAAATCAGT+GGG | 0.573329 | 2.4:+17939551 | None:intergenic |
TGGTAGAAAATTAGCTCACA+AGG | 0.574909 | 2.4:-17939311 | MS.gene065179:CDS |
AGGAGAAGTAGTGTGGAAGA+GGG | 0.575038 | 2.4:-17938745 | MS.gene065179:CDS |
GAATTTGCCACGGCATCAGT+GGG | 0.580597 | 2.4:-17938704 | MS.gene065179:CDS |
TGCCTTACCGTGTAGGTAGT+GGG | 0.583545 | 2.4:+17939458 | None:intergenic |
GTACAGAGAAAGAAAGACAT+AGG | 0.584385 | 2.4:+17938677 | None:intergenic |
ATCAGCCAAGGAAAGATGCA+TGG | 0.587677 | 2.4:-17938576 | MS.gene065179:CDS |
AGATTCACTTCCTTCACTGG+AGG | 0.588226 | 2.4:+17939114 | None:intergenic |
TGATTGGTCCACAAGTGGCT+AGG | 0.590458 | 2.4:-17938491 | MS.gene065179:CDS |
CCAGGGAACCTAGCCACTTG+TGG | 0.590886 | 2.4:+17938483 | None:intergenic |
CACAATACCCACTACCTACA+CGG | 0.590900 | 2.4:-17939465 | MS.gene065179:intron |
GGAACTTAAGCCAGATGAGG+TGG | 0.592388 | 2.4:-17939197 | MS.gene065179:CDS |
GCGCAAGAATTGATCAGCCA+AGG | 0.594615 | 2.4:-17938588 | MS.gene065179:CDS |
GTAAGGTAGAGAAAGGAGTG+AGG | 0.595969 | 2.4:+17941199 | None:intergenic |
GTACAGATTGACAGGAAACA+AGG | 0.596022 | 2.4:-17938658 | MS.gene065179:CDS |
ACAAGCGTAAGAGTTACTCC+AGG | 0.600044 | 2.4:+17939061 | None:intergenic |
ATGGCATGGGAAGAAATACT+GGG | 0.602526 | 2.4:-17939266 | MS.gene065179:CDS |
CCATGCCATTCATACATCAA+AGG | 0.604422 | 2.4:+17939280 | None:intergenic |
CTACCAAGTAACCAAGAATG+TGG | 0.605333 | 2.4:-17940611 | MS.gene065179:CDS |
AATCTGACCGTCTTGTGCAT+TGG | 0.606132 | 2.4:-17939096 | MS.gene065179:CDS |
AAGCGAGTTGGAATTTGCCA+CGG | 0.608188 | 2.4:-17938714 | MS.gene065179:CDS |
GCTGTTATAGCTAAGCAAGC+TGG | 0.609160 | 2.4:-17939736 | MS.gene065179:CDS |
GAACATATGCCTTACCGTGT+AGG | 0.609489 | 2.4:+17939451 | None:intergenic |
GATTCACTTCCTTCACTGGA+GGG | 0.611653 | 2.4:+17939115 | None:intergenic |
AGGTGTTCCCACTGATGCCG+TGG | 0.612064 | 2.4:+17938697 | None:intergenic |
TTTAGCCGGAGATGTCTGAT+CGG | 0.613413 | 2.4:-17941322 | None:intergenic |
GGAGAAGTAGTGTGGAAGAG+GGG | 0.618091 | 2.4:-17938744 | MS.gene065179:CDS |
TTCTAGTGGGAACCGTGTGA+AGG | 0.618170 | 2.4:-17940686 | MS.gene065179:CDS |
GTGAGACATGGGGTTCTAGT+GGG | 0.619681 | 2.4:-17940699 | MS.gene065179:CDS |
TTACCTTAGACAATTCAAAG+AGG | 0.627912 | 2.4:-17939692 | MS.gene065179:intron |
TAACTCATAGGGCAAATCAG+TGG | 0.629793 | 2.4:+17939550 | None:intergenic |
CTTTGATGTATGAATGGCAT+GGG | 0.630619 | 2.4:-17939279 | MS.gene065179:CDS |
TGACTCAAAGTTCATAGCCA+GGG | 0.635792 | 2.4:+17938466 | None:intergenic |
AAGATGCAGGAGAAGTAGTG+TGG | 0.637341 | 2.4:-17938752 | MS.gene065179:CDS |
AGACATGATTGGTCCACAAG+TGG | 0.638089 | 2.4:-17938496 | MS.gene065179:CDS |
TACGCTTGTAAAAGCAGCCG+AGG | 0.641247 | 2.4:-17939047 | MS.gene065179:intron |
AGCCGCGTGACGTTCATCTG+TGG | 0.645771 | 2.4:-17939784 | MS.gene065179:CDS |
CGTGACACCAATGCACAAGA+CGG | 0.665767 | 2.4:+17939089 | None:intergenic |
GAAGGACTATACGCTTTACA+CGG | 0.667005 | 2.4:-17940668 | MS.gene065179:CDS |
CATGGAACTTAAGCCAGATG+AGG | 0.673066 | 2.4:-17939200 | MS.gene065179:CDS |
GTTGTCTCTGGCATGAATGG+TGG | 0.674768 | 2.4:+17941281 | None:intergenic |
GGACTATACGCTTTACACGG+CGG | 0.675860 | 2.4:-17940665 | MS.gene065179:CDS |
GGCCACAGATGAACGTCACG+CGG | 0.686482 | 2.4:+17939782 | None:intergenic |
CCTTTGATGTATGAATGGCA+TGG | 0.688871 | 2.4:-17939280 | MS.gene065179:CDS |
GATGAGGTGGAAGATGTCAA+GGG | 0.689281 | 2.4:-17939184 | MS.gene065179:CDS |
AAACAAGGAGTACTTGTACA+GGG | 0.691885 | 2.4:-17938643 | MS.gene065179:CDS |
GGTAGAAAATTAGCTCACAA+GGG | 0.710711 | 2.4:-17939310 | MS.gene065179:CDS |
AGCCAAGGAAAGATGCATGG+AGG | 0.724314 | 2.4:-17938573 | MS.gene065179:CDS |
AAGGTGGTGAGTGAGACATG+GGG | 0.727439 | 2.4:-17940709 | MS.gene065179:CDS |
AAAGCGTATAGTCCTTCACA+CGG | 0.761639 | 2.4:+17940674 | None:intergenic |
TGGCATGGGAAGAAATACTG+GGG | 0.762911 | 2.4:-17939265 | MS.gene065179:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CTCATTATAAAAAAAAATAA+AGG | + | chr2.4:17940769-17940788 | None:intergenic | 10.0% |
!!! | CTTTATTTTTTTTTATAATG+AGG | - | chr2.4:17940767-17940786 | MS.gene065179:intron | 10.0% |
!!! | TTGTTTATGTATTATTTTTA+AGG | - | chr2.4:17939053-17939072 | MS.gene065179:CDS | 10.0% |
!! | AGAAAAAATGAAAATTATTG+TGG | + | chr2.4:17938664-17938683 | None:intergenic | 15.0% |
!!! | AATTTTCATTTTTTCTTTGT+GGG | - | chr2.4:17938668-17938687 | MS.gene065179:CDS | 15.0% |
!!! | TAATTTTCATTTTTTCTTTG+TGG | - | chr2.4:17938667-17938686 | MS.gene065179:CDS | 15.0% |
!!! | TTTATGTATTATTTTTAAGG+TGG | - | chr2.4:17939056-17939075 | MS.gene065179:CDS | 15.0% |
!! | AAACTTTGATTGTTCAATTT+AGG | + | chr2.4:17939912-17939931 | None:intergenic | 20.0% |
!! | CTAATTTCTTTACCATAATT+AGG | - | chr2.4:17940973-17940992 | MS.gene065179:intron | 20.0% |
!! | TATTAATTACGTTAAACAGA+TGG | + | chr2.4:17939590-17939609 | None:intergenic | 20.0% |
!! | TTCATCATAAACCATAAATT+TGG | + | chr2.4:17939542-17939561 | None:intergenic | 20.0% |
!!! | AAATTAAAAGCCAATTTTCA+TGG | + | chr2.4:17940409-17940428 | None:intergenic | 20.0% |
!!! | CAATTTCTGTTTTTTCATTT+TGG | - | chr2.4:17938698-17938717 | MS.gene065179:CDS | 20.0% |
!!! | TGTTAATATATTTTGTTGTC+TGG | - | chr2.4:17939794-17939813 | MS.gene065179:intron | 20.0% |
!!! | TTATGATGAATTTTGAAACA+TGG | - | chr2.4:17939552-17939571 | MS.gene065179:CDS | 20.0% |
!!! | TTTACCATAATTAGGTTTTT+GGG | - | chr2.4:17940981-17941000 | MS.gene065179:intron | 20.0% |
! | AATAAAGGGAAATATTACCT+CGG | + | chr2.4:17940754-17940773 | None:intergenic | 25.0% |
! | AATGCAATTTAGATGGTTTA+TGG | - | chr2.4:17939377-17939396 | MS.gene065179:intron | 25.0% |
! | AGTTGAACATCTGAAAATAA+TGG | + | chr2.4:17939478-17939497 | None:intergenic | 25.0% |
! | GATTTCTGTACAATTAAATG+TGG | - | chr2.4:17939324-17939343 | MS.gene065179:CDS | 25.0% |
! | TAATGAAGTTACATTGGTAT+TGG | + | chr2.4:17939432-17939451 | None:intergenic | 25.0% |
! | TCACATAAATGCTTATGTAT+AGG | + | chr2.4:17939002-17939021 | None:intergenic | 25.0% |
! | TCATTCTTAAACAAGCATAT+CGG | - | chr2.4:17940287-17940306 | MS.gene065179:intron | 25.0% |
! | TCCAATTTACACATGAATTT+CGG | - | chr2.4:17940153-17940172 | MS.gene065179:intron | 25.0% |
! | TGCAAAAATGCAATTCAATT+AGG | + | chr2.4:17938821-17938840 | None:intergenic | 25.0% |
! | TTTATCCTTAGGATTAAGTT+AGG | - | chr2.4:17939844-17939863 | MS.gene065179:intron | 25.0% |
! | TTTATGCTTGAAGATTGTTA+AGG | - | chr2.4:17939203-17939222 | MS.gene065179:CDS | 25.0% |
!! | CTTTACCATAATTAGGTTTT+TGG | - | chr2.4:17940980-17940999 | MS.gene065179:intron | 25.0% |
!! | TGTGTTTTCTAATTCTTCTT+AGG | - | chr2.4:17938795-17938814 | MS.gene065179:intron | 25.0% |
!! | TTACCATAATTAGGTTTTTG+GGG | - | chr2.4:17940982-17941001 | MS.gene065179:intron | 25.0% |
!!! | GTTAAACTTCTTTTTCGTAT+TGG | - | chr2.4:17940178-17940197 | MS.gene065179:intron | 25.0% |
!!! | TCTGTTTTTTCATTTTGGTT+AGG | - | chr2.4:17938703-17938722 | MS.gene065179:CDS | 25.0% |
AGATGGTTTATGGATATATC+AGG | - | chr2.4:17939387-17939406 | MS.gene065179:intron | 30.0% | |
AGTGGTTAATGCAATTTAGA+TGG | - | chr2.4:17939370-17939389 | MS.gene065179:intron | 30.0% | |
ATACCTCTTTGAATTGTCTA+AGG | + | chr2.4:17940095-17940114 | None:intergenic | 30.0% | |
ATTAAAAATCGTTTCTCGAG+TGG | - | chr2.4:17940636-17940655 | MS.gene065179:CDS | 30.0% | |
ATTAACCACAAATTTGAACG+TGG | - | chr2.4:17939448-17939467 | MS.gene065179:intron | 30.0% | |
ATTTGAACACCTGGAAATTA+TGG | - | chr2.4:17939506-17939525 | MS.gene065179:CDS | 30.0% | |
CATATTCAAATACAAGCTTC+AGG | - | chr2.4:17940809-17940828 | MS.gene065179:intron | 30.0% | |
CATTTCCTAACTTAATCCTA+AGG | + | chr2.4:17939852-17939871 | None:intergenic | 30.0% | |
CCAATTTACACATGAATTTC+GGG | - | chr2.4:17940154-17940173 | MS.gene065179:intron | 30.0% | |
CTGAAGCTTGTATTTGAATA+TGG | + | chr2.4:17940811-17940830 | None:intergenic | 30.0% | |
CTTAAAGACATGTCATAAGT+TGG | + | chr2.4:17938874-17938893 | None:intergenic | 30.0% | |
CTTAGGATTAAGTTAGGAAA+TGG | - | chr2.4:17939850-17939869 | MS.gene065179:intron | 30.0% | |
GTCAATGACATCCAAATTTA+TGG | - | chr2.4:17939528-17939547 | MS.gene065179:CDS | 30.0% | |
GTTATAACTTCATCCACAAT+TGG | + | chr2.4:17940447-17940466 | None:intergenic | 30.0% | |
TACGTTAAACAGATGGTTTA+TGG | + | chr2.4:17939583-17939602 | None:intergenic | 30.0% | |
TATACCTTTCTAGACATGAT+TGG | - | chr2.4:17941274-17941293 | MS.gene065179:CDS | 30.0% | |
TATCCCCAAAAACCTAATTA+TGG | + | chr2.4:17940988-17941007 | None:intergenic | 30.0% | |
TCAGGTTTGTGCAAATTTAT+CGG | + | chr2.4:17940859-17940878 | None:intergenic | 30.0% | |
TGTGGTTAATGAAGTTACAT+TGG | + | chr2.4:17939438-17939457 | None:intergenic | 30.0% | |
TTACCTTAGACAATTCAAAG+AGG | - | chr2.4:17940089-17940108 | MS.gene065179:intron | 30.0% | |
! | AGGAATTATGAACGTTTTGA+TGG | - | chr2.4:17940557-17940576 | MS.gene065179:CDS | 30.0% |
! | ATTTTGCAGTGTTCATTGTA+TGG | - | chr2.4:17940888-17940907 | MS.gene065179:intron | 30.0% |
! | TCCTTTACATCATATTGACT+CGG | + | chr2.4:17940835-17940854 | None:intergenic | 30.0% |
! | TTTAAAACTACGCCTTACAA+CGG | + | chr2.4:17939296-17939315 | None:intergenic | 30.0% |
! | TTTTTGACAGAAACCAATTG+TGG | - | chr2.4:17940431-17940450 | MS.gene065179:intron | 30.0% |
!! | ATAATTAGGTTTTTGGGGAT+AGG | - | chr2.4:17940987-17941006 | MS.gene065179:intron | 30.0% |
!! | TAATTAGGTTTTTGGGGATA+GGG | - | chr2.4:17940988-17941007 | MS.gene065179:intron | 30.0% |
!!! | CGTATTGGTGCTTTTATTTT+TGG | - | chr2.4:17940193-17940212 | MS.gene065179:intron | 30.0% |
AAGGCATATGTTCTTCATCA+TGG | - | chr2.4:17940340-17940359 | MS.gene065179:intron | 35.0% | |
ACTAAGATCATCCACATTCT+TGG | + | chr2.4:17939184-17939203 | None:intergenic | 35.0% | |
AGACCTTCGAATAAGGAATA+AGG | + | chr2.4:17941241-17941260 | None:intergenic | 35.0% | |
AGCACTTCACTTCAAACAAT+TGG | - | chr2.4:17938634-17938653 | MS.gene065179:CDS | 35.0% | |
ATCAAAGTTTCAGCCTGAAA+TGG | - | chr2.4:17939922-17939941 | MS.gene065179:intron | 35.0% | |
ATTCTGCTTCAGCAAATTCA+AGG | - | chr2.4:17939232-17939251 | MS.gene065179:CDS | 35.0% | |
ATTTGCTCGTGTTTATCCTT+AGG | - | chr2.4:17939833-17939852 | MS.gene065179:intron | 35.0% | |
CAACGAAATTTAGACAGCTT+TGG | + | chr2.4:17939651-17939670 | None:intergenic | 35.0% | |
CAAGTTAGAAACTTTCACGT+TGG | - | chr2.4:17938728-17938747 | MS.gene065179:CDS | 35.0% | |
CCCGAAATTCATGTGTAAAT+TGG | + | chr2.4:17940157-17940176 | None:intergenic | 35.0% | |
CTGCCATACAATAACTCATA+GGG | + | chr2.4:17940245-17940264 | None:intergenic | 35.0% | |
CTTTGATGTATGAATGGCAT+GGG | - | chr2.4:17940502-17940521 | MS.gene065179:intron | 35.0% | |
GACCTTCGAATAAGGAATAA+GGG | + | chr2.4:17941240-17941259 | None:intergenic | 35.0% | |
GATGTCCTTTGATGTATGAA+TGG | - | chr2.4:17940496-17940515 | MS.gene065179:intron | 35.0% | |
GGTAGAAAATTAGCTCACAA+GGG | - | chr2.4:17940471-17940490 | MS.gene065179:intron | 35.0% | |
GTACAGAGAAAGAAAGACAT+AGG | + | chr2.4:17941107-17941126 | None:intergenic | 35.0% | |
GTTAACCACGTTCAAATTTG+TGG | + | chr2.4:17939456-17939475 | None:intergenic | 35.0% | |
TACTCTCTATTTCATGCATC+TGG | - | chr2.4:17939255-17939274 | MS.gene065179:CDS | 35.0% | |
TATTCCTTATTCGAAGGTCT+TGG | - | chr2.4:17941241-17941260 | MS.gene065179:CDS | 35.0% | |
TCAAAGTTTCAGCCTGAAAT+GGG | - | chr2.4:17939923-17939942 | MS.gene065179:intron | 35.0% | |
TCTGCCATACAATAACTCAT+AGG | + | chr2.4:17940246-17940265 | None:intergenic | 35.0% | |
TGGTAGAAAATTAGCTCACA+AGG | - | chr2.4:17940470-17940489 | MS.gene065179:intron | 35.0% | |
TGTCATTGACCATAATTTCC+AGG | + | chr2.4:17939518-17939537 | None:intergenic | 35.0% | |
TTAAATGTGGACAACTTTCG+CGG | - | chr2.4:17939337-17939356 | MS.gene065179:CDS | 35.0% | |
TTGCCCTATGAGTTATTGTA+TGG | - | chr2.4:17940239-17940258 | MS.gene065179:intron | 35.0% | |
TTGGCTACATCTTCTATAAG+TGG | + | chr2.4:17939632-17939651 | None:intergenic | 35.0% | |
TTTCACGTTGGTGCAATAAT+GGG | - | chr2.4:17938740-17938759 | MS.gene065179:CDS | 35.0% | |
! | TGAAGTTACATTGGTATTGG+TGG | + | chr2.4:17939429-17939448 | None:intergenic | 35.0% |
!! | AAACAAGGAGTACTTGTACA+GGG | - | chr2.4:17941138-17941157 | MS.gene065179:intron | 35.0% |
!! | AACGGCATACTTGGTTTTTA+AGG | - | chr2.4:17939146-17939165 | MS.gene065179:CDS | 35.0% |
!! | TATGAACGTTTTGATGGACA+TGG | - | chr2.4:17940563-17940582 | MS.gene065179:CDS | 35.0% |
!! | TGCTGTAGTTTGTAGTTTTG+AGG | + | chr2.4:17938618-17938637 | None:intergenic | 35.0% |
!! | TTTCGCGGTAACTTTTTAAG+TGG | - | chr2.4:17939352-17939371 | MS.gene065179:intron | 35.0% |
AAAGCGTATAGTCCTTCACA+CGG | + | chr2.4:17939110-17939129 | None:intergenic | 40.0% | |
AACTCATAGGGCAAATCAGT+GGG | + | chr2.4:17940233-17940252 | None:intergenic | 40.0% | |
AATGGCATGGGAAGAAATAC+TGG | - | chr2.4:17940514-17940533 | MS.gene065179:intron | 40.0% | |
ATGAATGGTGGCAAGTTGTT+CGG | + | chr2.4:17938491-17938510 | None:intergenic | 40.0% | |
ATGGCAGAACAGGTTACTTA+TGG | - | chr2.4:17940258-17940277 | MS.gene065179:intron | 40.0% | |
ATGGCATGGGAAGAAATACT+GGG | - | chr2.4:17940515-17940534 | MS.gene065179:intron | 40.0% | |
CATCCACATTCTTGGTTACT+TGG | + | chr2.4:17939176-17939195 | None:intergenic | 40.0% | |
CCATGCCATTCATACATCAA+AGG | + | chr2.4:17940504-17940523 | None:intergenic | 40.0% | |
CCTTTGATGTATGAATGGCA+TGG | - | chr2.4:17940501-17940520 | MS.gene065179:intron | 40.0% | |
CTACCAAGTAACCAAGAATG+TGG | - | chr2.4:17939170-17939189 | MS.gene065179:CDS | 40.0% | |
CTGCAAAATCCATTGCAATC+AGG | + | chr2.4:17940877-17940896 | None:intergenic | 40.0% | |
CTTTCACGTTGGTGCAATAA+TGG | - | chr2.4:17938739-17938758 | MS.gene065179:CDS | 40.0% | |
CTTTCTCTGTACAGATTGAC+AGG | - | chr2.4:17941115-17941134 | MS.gene065179:intron | 40.0% | |
GAAGGACTATACGCTTTACA+CGG | - | chr2.4:17939113-17939132 | MS.gene065179:CDS | 40.0% | |
GACTTAACTTAGCCGTTGTA+AGG | - | chr2.4:17939281-17939300 | MS.gene065179:CDS | 40.0% | |
GAGTTATTGTATGGCAGAAC+AGG | - | chr2.4:17940248-17940267 | MS.gene065179:intron | 40.0% | |
GCCGAGTCAATATGATGTAA+AGG | - | chr2.4:17940831-17940850 | MS.gene065179:intron | 40.0% | |
GTACAGATTGACAGGAAACA+AGG | - | chr2.4:17941123-17941142 | MS.gene065179:intron | 40.0% | |
GTGGATGAAGTTATAACAGC+TGG | - | chr2.4:17940450-17940469 | MS.gene065179:intron | 40.0% | |
GTGGTTAATGCACTTCGAAT+AGG | + | chr2.4:17939613-17939632 | None:intergenic | 40.0% | |
GTGTTTGGTAAGGTAGAGAA+AGG | + | chr2.4:17938592-17938611 | None:intergenic | 40.0% | |
TAACTCATAGGGCAAATCAG+TGG | + | chr2.4:17940234-17940253 | None:intergenic | 40.0% | |
TCCAGGTGTTCAAATCTACA+TGG | + | chr2.4:17939501-17939520 | None:intergenic | 40.0% | |
TCCATGTAGATTTGAACACC+TGG | - | chr2.4:17939497-17939516 | MS.gene065179:CDS | 40.0% | |
TGGACCAATCATGTCTAGAA+AGG | + | chr2.4:17941281-17941300 | None:intergenic | 40.0% | |
TGGCAGAACAGGTTACTTAT+GGG | - | chr2.4:17940259-17940278 | MS.gene065179:intron | 40.0% | |
TTGCACAAACCTGATTGCAA+TGG | - | chr2.4:17940865-17940884 | MS.gene065179:intron | 40.0% | |
! | TGTTCTTCAAGTGTTGTCTC+TGG | + | chr2.4:17938515-17938534 | None:intergenic | 40.0% |
! | TTTGAGGTGAGTGTTTGGTA+AGG | + | chr2.4:17938602-17938621 | None:intergenic | 40.0% |
!! | GAAACAAGGAGTACTTGTAC+AGG | - | chr2.4:17941137-17941156 | MS.gene065179:intron | 40.0% |
!! | TGTCGACTTGCCATGAAAAT+TGG | - | chr2.4:17940396-17940415 | MS.gene065179:intron | 40.0% |
!!! | GTAGTTTTGAGGTGAGTGTT+TGG | + | chr2.4:17938607-17938626 | None:intergenic | 40.0% |
AAATGGGAGGATGGGAAGTA+AGG | - | chr2.4:17939939-17939958 | MS.gene065179:intron | 45.0% | |
AAGATGCAGGAGAAGTAGTG+TGG | - | chr2.4:17941029-17941048 | MS.gene065179:intron | 45.0% | |
AAGTTTCAGCCTGAAATGGG+AGG | - | chr2.4:17939926-17939945 | MS.gene065179:intron | 45.0% | |
AATCTGACCGTCTTGTGCAT+TGG | - | chr2.4:17940685-17940704 | MS.gene065179:CDS | 45.0% | |
ACAAGCGTAAGAGTTACTCC+AGG | + | chr2.4:17940723-17940742 | None:intergenic | 45.0% | |
AGATGAGGTGGAAGATGTCA+AGG | - | chr2.4:17940596-17940615 | MS.gene065179:CDS | 45.0% | |
AGATTCACTTCCTTCACTGG+AGG | + | chr2.4:17940670-17940689 | None:intergenic | 45.0% | |
AGGAGAAGTAGTGTGGAAGA+GGG | - | chr2.4:17941036-17941055 | MS.gene065179:intron | 45.0% | |
AGTGTTGTCTCTGGCATGAA+TGG | + | chr2.4:17938506-17938525 | None:intergenic | 45.0% | |
ATCAGCCAAGGAAAGATGCA+TGG | - | chr2.4:17941205-17941224 | MS.gene065179:CDS | 45.0% | |
ATTCGAAGGTCTTGGAGGAA+TGG | - | chr2.4:17941249-17941268 | MS.gene065179:CDS | 45.0% | |
CACAATACCCACTACCTACA+CGG | - | chr2.4:17940316-17940335 | MS.gene065179:intron | 45.0% | |
CATGGAACTTAAGCCAGATG+AGG | - | chr2.4:17940581-17940600 | MS.gene065179:CDS | 45.0% | |
CGCCCTTATTCCTTATTCGA+AGG | - | chr2.4:17941235-17941254 | MS.gene065179:CDS | 45.0% | |
GAACATATGCCTTACCGTGT+AGG | + | chr2.4:17940333-17940352 | None:intergenic | 45.0% | |
GAGTACTTGTACAGGGCTAA+AGG | - | chr2.4:17941145-17941164 | MS.gene065179:intron | 45.0% | |
GATGAGGTGGAAGATGTCAA+GGG | - | chr2.4:17940597-17940616 | MS.gene065179:CDS | 45.0% | |
GATTCACTTCCTTCACTGGA+GGG | + | chr2.4:17940669-17940688 | None:intergenic | 45.0% | |
GCTGTTATAGCTAAGCAAGC+TGG | - | chr2.4:17940045-17940064 | MS.gene065179:intron | 45.0% | |
GTAAGGTAGAGAAAGGAGTG+AGG | + | chr2.4:17938585-17938604 | None:intergenic | 45.0% | |
GTCAGATTCACTTCCTTCAC+TGG | + | chr2.4:17940673-17940692 | None:intergenic | 45.0% | |
TAAGGTGGTGAGTGAGACAT+GGG | - | chr2.4:17939071-17939090 | MS.gene065179:CDS | 45.0% | |
TCCTCCAAGACCTTCGAATA+AGG | + | chr2.4:17941248-17941267 | None:intergenic | 45.0% | |
TCCTTATTCGAAGGTCTTGG+AGG | - | chr2.4:17941244-17941263 | MS.gene065179:CDS | 45.0% | |
TGGCATGGGAAGAAATACTG+GGG | - | chr2.4:17940516-17940535 | MS.gene065179:intron | 45.0% | |
TTAAGGTGGTGAGTGAGACA+TGG | - | chr2.4:17939070-17939089 | MS.gene065179:CDS | 45.0% | |
TTGACATCTTCCACCTCATC+TGG | + | chr2.4:17940597-17940616 | None:intergenic | 45.0% | |
! | AAGCGAGTTGGAATTTGCCA+CGG | - | chr2.4:17941067-17941086 | MS.gene065179:intron | 45.0% |
! | AGACATGATTGGTCCACAAG+TGG | - | chr2.4:17941285-17941304 | MS.gene065179:CDS | 45.0% |
! | TAGGGAATTTTCGCAAGCAG+CGG | - | chr2.4:17941006-17941025 | MS.gene065179:intron | 45.0% |
!! | ACGTTGGTGCAATAATGGGT+CGG | - | chr2.4:17938744-17938763 | MS.gene065179:CDS | 45.0% |
!! | TGGTGTTGGTGTTTGAGAAG+AGG | + | chr2.4:17938552-17938571 | None:intergenic | 45.0% |
!! | TCATTATAAAAAAAAATAAA+GGG | + | chr2.4:17940768-17940787 | None:intergenic | 5.0% |
AAGGTGGTGAGTGAGACATG+GGG | - | chr2.4:17939072-17939091 | MS.gene065179:CDS | 50.0% | |
ACTTCCCATCCTCCCATTTC+AGG | + | chr2.4:17939938-17939957 | None:intergenic | 50.0% | |
AGCCAAGGAAAGATGCATGG+AGG | - | chr2.4:17941208-17941227 | MS.gene065179:CDS | 50.0% | |
AGGGGTCTTCTTAAGCGAGT+TGG | - | chr2.4:17941055-17941074 | MS.gene065179:intron | 50.0% | |
ATGCCTTACCGTGTAGGTAG+TGG | + | chr2.4:17940327-17940346 | None:intergenic | 50.0% | |
CAGGAGAAGTAGTGTGGAAG+AGG | - | chr2.4:17941035-17941054 | MS.gene065179:intron | 50.0% | |
CGTGACACCAATGCACAAGA+CGG | + | chr2.4:17940695-17940714 | None:intergenic | 50.0% | |
CTCCTCCATGCATCTTTCCT+TGG | + | chr2.4:17941213-17941232 | None:intergenic | 50.0% | |
GAATTTGCCACGGCATCAGT+GGG | - | chr2.4:17941077-17941096 | MS.gene065179:intron | 50.0% | |
GCGCAAGAATTGATCAGCCA+AGG | - | chr2.4:17941193-17941212 | MS.gene065179:CDS | 50.0% | |
GGAACTTAAGCCAGATGAGG+TGG | - | chr2.4:17940584-17940603 | MS.gene065179:CDS | 50.0% | |
GGACTATACGCTTTACACGG+CGG | - | chr2.4:17939116-17939135 | MS.gene065179:CDS | 50.0% | |
GGAGAAGTAGTGTGGAAGAG+GGG | - | chr2.4:17941037-17941056 | MS.gene065179:intron | 50.0% | |
GGCAATTATCCCTCCAGTGA+AGG | - | chr2.4:17940657-17940676 | MS.gene065179:CDS | 50.0% | |
GGTTCTTGGAACGGCATACT+TGG | - | chr2.4:17939137-17939156 | MS.gene065179:CDS | 50.0% | |
GTTGTCTCTGGCATGAATGG+TGG | + | chr2.4:17938503-17938522 | None:intergenic | 50.0% | |
TACCCACTACCTACACGGTA+AGG | - | chr2.4:17940321-17940340 | MS.gene065179:intron | 50.0% | |
TACGCTTGTAAAAGCAGCCG+AGG | - | chr2.4:17940734-17940753 | MS.gene065179:intron | 50.0% | |
TCAGCCTGAAATGGGAGGAT+GGG | - | chr2.4:17939931-17939950 | MS.gene065179:intron | 50.0% | |
TGCCTTACCGTGTAGGTAGT+GGG | + | chr2.4:17940326-17940345 | None:intergenic | 50.0% | |
TTACACGGCGGTTCTTGGAA+CGG | - | chr2.4:17939128-17939147 | MS.gene065179:CDS | 50.0% | |
TTCAGCCTGAAATGGGAGGA+TGG | - | chr2.4:17939930-17939949 | MS.gene065179:intron | 50.0% | |
TTCTAGTGGGAACCGTGTGA+AGG | - | chr2.4:17939095-17939114 | MS.gene065179:CDS | 50.0% | |
! | AGCACCAAGAGCACAAACAC+CGG | + | chr2.4:17940028-17940047 | None:intergenic | 50.0% |
! | AGTGAGACATGGGGTTCTAG+TGG | - | chr2.4:17939081-17939100 | MS.gene065179:CDS | 50.0% |
! | GTGAGACATGGGGTTCTAGT+GGG | - | chr2.4:17939082-17939101 | MS.gene065179:CDS | 50.0% |
! | TGATTGGTCCACAAGTGGCT+AGG | - | chr2.4:17941290-17941309 | MS.gene065179:CDS | 50.0% |
!! | AAATACTGGGGTGCTGCTCA+TGG | - | chr2.4:17940528-17940547 | MS.gene065179:intron | 50.0% |
!! | CGTCTTGTGCATTGGTGTCA+CGG | - | chr2.4:17940693-17940712 | MS.gene065179:CDS | 50.0% |
ACGCTTTACACGGCGGTTCT+TGG | - | chr2.4:17939123-17939142 | MS.gene065179:CDS | 55.0% | |
AGGAGTGAGGTGAGAGAGTG+TGG | + | chr2.4:17938572-17938591 | None:intergenic | 55.0% | |
GGAATTTGCCACGGCATCAG+TGG | - | chr2.4:17941076-17941095 | MS.gene065179:intron | 55.0% | |
TGGGAGGATGGGAAGTAAGG+TGG | - | chr2.4:17939942-17939961 | MS.gene065179:intron | 55.0% | |
! | CAAGAGCACAAACACCGGCA+CGG | + | chr2.4:17940023-17940042 | None:intergenic | 55.0% |
! | GAGGTGAGAGAGTGTGGTGT+TGG | + | chr2.4:17938566-17938585 | None:intergenic | 55.0% |
ACGTTCATCTGTGGCCGTGC+CGG | - | chr2.4:17940006-17940025 | MS.gene065179:intron | 60.0% | |
AGCCGCGTGACGTTCATCTG+TGG | - | chr2.4:17939997-17940016 | MS.gene065179:intron | 60.0% | |
AGGTGTTCCCACTGATGCCG+TGG | + | chr2.4:17941087-17941106 | None:intergenic | 60.0% | |
CCACAAGTGGCTAGGTTCCC+TGG | - | chr2.4:17941298-17941317 | MS.gene065179:CDS | 60.0% | |
CCAGGGAACCTAGCCACTTG+TGG | + | chr2.4:17941301-17941320 | None:intergenic | 60.0% | |
GGCCACAGATGAACGTCACG+CGG | + | chr2.4:17940002-17940021 | None:intergenic | 60.0% | |
TCGCAAGCAGCGGAAGATGC+AGG | - | chr2.4:17941016-17941035 | MS.gene065179:intron | 60.0% | |
! | CGTGCCGGTGTTTGTGCTCT+TGG | - | chr2.4:17940021-17940040 | MS.gene065179:intron | 60.0% |
!! | CATTGGTGTCACGGTGCTCC+TGG | - | chr2.4:17940702-17940721 | MS.gene065179:CDS | 60.0% |
!! | GGTGCTGCTCATGGACTTGC+AGG | - | chr2.4:17940537-17940556 | MS.gene065179:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 17938470 | 17941333 | 17938470 | ID=MS.gene065179 |
chr2.4 | mRNA | 17938470 | 17941333 | 17938470 | ID=MS.gene065179.t1;Parent=MS.gene065179 |
chr2.4 | exon | 17941148 | 17941333 | 17941148 | ID=MS.gene065179.t1.exon1;Parent=MS.gene065179.t1 |
chr2.4 | CDS | 17941148 | 17941333 | 17941148 | ID=cds.MS.gene065179.t1;Parent=MS.gene065179.t1 |
chr2.4 | exon | 17940550 | 17940728 | 17940550 | ID=MS.gene065179.t1.exon2;Parent=MS.gene065179.t1 |
chr2.4 | CDS | 17940550 | 17940728 | 17940550 | ID=cds.MS.gene065179.t1;Parent=MS.gene065179.t1 |
chr2.4 | exon | 17939693 | 17939804 | 17939693 | ID=MS.gene065179.t1.exon3;Parent=MS.gene065179.t1 |
chr2.4 | CDS | 17939693 | 17939804 | 17939693 | ID=cds.MS.gene065179.t1;Parent=MS.gene065179.t1 |
chr2.4 | exon | 17939466 | 17939582 | 17939466 | ID=MS.gene065179.t1.exon4;Parent=MS.gene065179.t1 |
chr2.4 | CDS | 17939466 | 17939582 | 17939466 | ID=cds.MS.gene065179.t1;Parent=MS.gene065179.t1 |
chr2.4 | exon | 17939048 | 17939362 | 17939048 | ID=MS.gene065179.t1.exon5;Parent=MS.gene065179.t1 |
chr2.4 | CDS | 17939048 | 17939362 | 17939048 | ID=cds.MS.gene065179.t1;Parent=MS.gene065179.t1 |
chr2.4 | exon | 17938470 | 17938808 | 17938470 | ID=MS.gene065179.t1.exon6;Parent=MS.gene065179.t1 |
chr2.4 | CDS | 17938470 | 17938808 | 17938470 | ID=cds.MS.gene065179.t1;Parent=MS.gene065179.t1 |
Gene Sequence |
Protein sequence |