AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene065179


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065179.t1 MTR_2g079700 93.046 417 27 1 1 415 1 417 0.0 786
MS.gene065179.t1 MTR_6g007490 65.468 417 142 2 1 415 25 441 0.0 587
MS.gene065179.t1 MTR_6g007490 61.889 307 115 2 1 305 25 331 6.67e-142 408
MS.gene065179.t1 MTR_3g086910 48.974 390 178 7 41 415 32 415 7.81e-118 350
MS.gene065179.t1 MTR_3g086910 46.595 279 129 6 41 305 32 304 1.69e-73 233
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065179.t1 AT1G52920 68.193 415 127 1 1 415 1 410 0.0 591
MS.gene065179.t1 AT2G20770 63.221 416 141 3 1 415 1 405 0.0 550
MS.gene065179.t1 AT5G65280 45.088 397 191 8 41 415 42 433 2.19e-112 336
MS.gene065179.t1 AT5G65280 47.573 309 147 5 121 415 4 311 6.44e-97 293

Find 114 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGCTTTACACGGCGGTTCT+TGG 0.238896 2.4:-17940658 MS.gene065179:CDS
ACTAAGATCATCCACATTCT+TGG 0.288609 2.4:+17940600 None:intergenic
ATACCTCTTTGAATTGTCTA+AGG 0.293167 2.4:+17939689 None:intergenic
AGACCTTCGAATAAGGAATA+AGG 0.296203 2.4:+17938543 None:intergenic
CATCCACATTCTTGGTTACT+TGG 0.297066 2.4:+17940608 None:intergenic
ATGGCAGAACAGGTTACTTA+TGG 0.303883 2.4:-17939523 MS.gene065179:CDS
TCCTCCAAGACCTTCGAATA+AGG 0.318685 2.4:+17938536 None:intergenic
GGTGCTGCTCATGGACTTGC+AGG 0.320322 2.4:-17939244 MS.gene065179:CDS
CGTGCCGGTGTTTGTGCTCT+TGG 0.351585 2.4:-17939760 MS.gene065179:CDS
CTCCTCCATGCATCTTTCCT+TGG 0.360360 2.4:+17938571 None:intergenic
TTGACATCTTCCACCTCATC+TGG 0.364253 2.4:+17939187 None:intergenic
TATTCCTTATTCGAAGGTCT+TGG 0.377583 2.4:-17938540 MS.gene065179:CDS
CATTGGTGTCACGGTGCTCC+TGG 0.378975 2.4:-17939079 MS.gene065179:CDS
AATGGCATGGGAAGAAATAC+TGG 0.383288 2.4:-17939267 MS.gene065179:CDS
GAGTTATTGTATGGCAGAAC+AGG 0.390773 2.4:-17939533 MS.gene065179:CDS
CCACAAGTGGCTAGGTTCCC+TGG 0.391353 2.4:-17938483 MS.gene065179:CDS
TGTTCTTCAAGTGTTGTCTC+TGG 0.397728 2.4:+17941269 None:intergenic
AGCACTTCACTTCAAACAAT+TGG 0.406303 2.4:-17941147 MS.gene065179:intron
CAGGAGAAGTAGTGTGGAAG+AGG 0.407282 2.4:-17938746 MS.gene065179:CDS
GGTTCTTGGAACGGCATACT+TGG 0.415147 2.4:-17940644 MS.gene065179:CDS
GTTATAACTTCATCCACAAT+TGG 0.424250 2.4:+17939337 None:intergenic
GTCAGATTCACTTCCTTCAC+TGG 0.425272 2.4:+17939111 None:intergenic
CTTTCTCTGTACAGATTGAC+AGG 0.431846 2.4:-17938666 MS.gene065179:CDS
TGGCAGAACAGGTTACTTAT+GGG 0.432303 2.4:-17939522 MS.gene065179:CDS
TCATTCTTAAACAAGCATAT+CGG 0.434369 2.4:-17939494 MS.gene065179:CDS
TATACCTTTCTAGACATGAT+TGG 0.445743 2.4:-17938507 MS.gene065179:CDS
ATTCTGCTTCAGCAAATTCA+AGG 0.460631 2.4:-17940549 MS.gene065179:intron
GACCTTCGAATAAGGAATAA+GGG 0.464630 2.4:+17938544 None:intergenic
TCTGCCATACAATAACTCAT+AGG 0.466009 2.4:+17939538 None:intergenic
GTGTTTGGTAAGGTAGAGAA+AGG 0.471162 2.4:+17941192 None:intergenic
TCCTTATTCGAAGGTCTTGG+AGG 0.474374 2.4:-17938537 MS.gene065179:CDS
AAATACTGGGGTGCTGCTCA+TGG 0.483810 2.4:-17939253 MS.gene065179:CDS
CGCCCTTATTCCTTATTCGA+AGG 0.485112 2.4:-17938546 MS.gene065179:CDS
TTTATGCTTGAAGATTGTTA+AGG 0.488334 2.4:-17940578 MS.gene065179:CDS
GAGGTGAGAGAGTGTGGTGT+TGG 0.490011 2.4:+17941218 None:intergenic
ATGCCTTACCGTGTAGGTAG+TGG 0.491158 2.4:+17939457 None:intergenic
TAAGGTGGTGAGTGAGACAT+GGG 0.495816 2.4:-17940710 MS.gene065179:intron
AGGGGTCTTCTTAAGCGAGT+TGG 0.504459 2.4:-17938726 MS.gene065179:CDS
GAGTACTTGTACAGGGCTAA+AGG 0.505457 2.4:-17938636 MS.gene065179:CDS
TCGCAAGCAGCGGAAGATGC+AGG 0.507394 2.4:-17938765 MS.gene065179:CDS
AGTGTTGTCTCTGGCATGAA+TGG 0.507407 2.4:+17941278 None:intergenic
TTGCCCTATGAGTTATTGTA+TGG 0.507703 2.4:-17939542 MS.gene065179:CDS
AGGAGTGAGGTGAGAGAGTG+TGG 0.508542 2.4:+17941212 None:intergenic
GTGACTCAAAGTTCATAGCC+AGG 0.511069 2.4:+17938465 None:intergenic
TTTGAGGTGAGTGTTTGGTA+AGG 0.514421 2.4:+17941182 None:intergenic
CAAGAGCACAAACACCGGCA+CGG 0.514774 2.4:+17939761 None:intergenic
GAAACAAGGAGTACTTGTAC+AGG 0.518932 2.4:-17938644 MS.gene065179:CDS
CGTCTTGTGCATTGGTGTCA+CGG 0.521333 2.4:-17939088 MS.gene065179:CDS
TTACACGGCGGTTCTTGGAA+CGG 0.521411 2.4:-17940653 MS.gene065179:CDS
TGGACCAATCATGTCTAGAA+AGG 0.522222 2.4:+17938503 None:intergenic
ATGAATGGTGGCAAGTTGTT+CGG 0.523714 2.4:+17941293 None:intergenic
GTGGATGAAGTTATAACAGC+TGG 0.524603 2.4:-17939331 MS.gene065179:CDS
TGGTGTTGGTGTTTGAGAAG+AGG 0.528091 2.4:+17941232 None:intergenic
ACGTTCATCTGTGGCCGTGC+CGG 0.530658 2.4:-17939775 MS.gene065179:CDS
CTGCCATACAATAACTCATA+GGG 0.530788 2.4:+17939539 None:intergenic
ATTCGAAGGTCTTGGAGGAA+TGG 0.532742 2.4:-17938532 MS.gene065179:CDS
GGAATTTGCCACGGCATCAG+TGG 0.534765 2.4:-17938705 MS.gene065179:CDS
GGCAATTATCCCTCCAGTGA+AGG 0.536493 2.4:-17939124 MS.gene065179:CDS
GATGTCCTTTGATGTATGAA+TGG 0.539425 2.4:-17939285 MS.gene065179:CDS
AGCACCAAGAGCACAAACAC+CGG 0.540687 2.4:+17939756 None:intergenic
TTAAGGTGGTGAGTGAGACA+TGG 0.547872 2.4:-17940711 MS.gene065179:intron
AGATGAGGTGGAAGATGTCA+AGG 0.556890 2.4:-17939185 MS.gene065179:CDS
AGTGAGACATGGGGTTCTAG+TGG 0.556968 2.4:-17940700 MS.gene065179:CDS
AACTCATAGGGCAAATCAGT+GGG 0.573329 2.4:+17939551 None:intergenic
TGGTAGAAAATTAGCTCACA+AGG 0.574909 2.4:-17939311 MS.gene065179:CDS
AGGAGAAGTAGTGTGGAAGA+GGG 0.575038 2.4:-17938745 MS.gene065179:CDS
GAATTTGCCACGGCATCAGT+GGG 0.580597 2.4:-17938704 MS.gene065179:CDS
TGCCTTACCGTGTAGGTAGT+GGG 0.583545 2.4:+17939458 None:intergenic
GTACAGAGAAAGAAAGACAT+AGG 0.584385 2.4:+17938677 None:intergenic
ATCAGCCAAGGAAAGATGCA+TGG 0.587677 2.4:-17938576 MS.gene065179:CDS
AGATTCACTTCCTTCACTGG+AGG 0.588226 2.4:+17939114 None:intergenic
TGATTGGTCCACAAGTGGCT+AGG 0.590458 2.4:-17938491 MS.gene065179:CDS
CCAGGGAACCTAGCCACTTG+TGG 0.590886 2.4:+17938483 None:intergenic
CACAATACCCACTACCTACA+CGG 0.590900 2.4:-17939465 MS.gene065179:intron
GGAACTTAAGCCAGATGAGG+TGG 0.592388 2.4:-17939197 MS.gene065179:CDS
GCGCAAGAATTGATCAGCCA+AGG 0.594615 2.4:-17938588 MS.gene065179:CDS
GTAAGGTAGAGAAAGGAGTG+AGG 0.595969 2.4:+17941199 None:intergenic
GTACAGATTGACAGGAAACA+AGG 0.596022 2.4:-17938658 MS.gene065179:CDS
ACAAGCGTAAGAGTTACTCC+AGG 0.600044 2.4:+17939061 None:intergenic
ATGGCATGGGAAGAAATACT+GGG 0.602526 2.4:-17939266 MS.gene065179:CDS
CCATGCCATTCATACATCAA+AGG 0.604422 2.4:+17939280 None:intergenic
CTACCAAGTAACCAAGAATG+TGG 0.605333 2.4:-17940611 MS.gene065179:CDS
AATCTGACCGTCTTGTGCAT+TGG 0.606132 2.4:-17939096 MS.gene065179:CDS
AAGCGAGTTGGAATTTGCCA+CGG 0.608188 2.4:-17938714 MS.gene065179:CDS
GCTGTTATAGCTAAGCAAGC+TGG 0.609160 2.4:-17939736 MS.gene065179:CDS
GAACATATGCCTTACCGTGT+AGG 0.609489 2.4:+17939451 None:intergenic
GATTCACTTCCTTCACTGGA+GGG 0.611653 2.4:+17939115 None:intergenic
AGGTGTTCCCACTGATGCCG+TGG 0.612064 2.4:+17938697 None:intergenic
TTTAGCCGGAGATGTCTGAT+CGG 0.613413 2.4:-17941322 None:intergenic
GGAGAAGTAGTGTGGAAGAG+GGG 0.618091 2.4:-17938744 MS.gene065179:CDS
TTCTAGTGGGAACCGTGTGA+AGG 0.618170 2.4:-17940686 MS.gene065179:CDS
GTGAGACATGGGGTTCTAGT+GGG 0.619681 2.4:-17940699 MS.gene065179:CDS
TTACCTTAGACAATTCAAAG+AGG 0.627912 2.4:-17939692 MS.gene065179:intron
TAACTCATAGGGCAAATCAG+TGG 0.629793 2.4:+17939550 None:intergenic
CTTTGATGTATGAATGGCAT+GGG 0.630619 2.4:-17939279 MS.gene065179:CDS
TGACTCAAAGTTCATAGCCA+GGG 0.635792 2.4:+17938466 None:intergenic
AAGATGCAGGAGAAGTAGTG+TGG 0.637341 2.4:-17938752 MS.gene065179:CDS
AGACATGATTGGTCCACAAG+TGG 0.638089 2.4:-17938496 MS.gene065179:CDS
TACGCTTGTAAAAGCAGCCG+AGG 0.641247 2.4:-17939047 MS.gene065179:intron
AGCCGCGTGACGTTCATCTG+TGG 0.645771 2.4:-17939784 MS.gene065179:CDS
CGTGACACCAATGCACAAGA+CGG 0.665767 2.4:+17939089 None:intergenic
GAAGGACTATACGCTTTACA+CGG 0.667005 2.4:-17940668 MS.gene065179:CDS
CATGGAACTTAAGCCAGATG+AGG 0.673066 2.4:-17939200 MS.gene065179:CDS
GTTGTCTCTGGCATGAATGG+TGG 0.674768 2.4:+17941281 None:intergenic
GGACTATACGCTTTACACGG+CGG 0.675860 2.4:-17940665 MS.gene065179:CDS
GGCCACAGATGAACGTCACG+CGG 0.686482 2.4:+17939782 None:intergenic
CCTTTGATGTATGAATGGCA+TGG 0.688871 2.4:-17939280 MS.gene065179:CDS
GATGAGGTGGAAGATGTCAA+GGG 0.689281 2.4:-17939184 MS.gene065179:CDS
AAACAAGGAGTACTTGTACA+GGG 0.691885 2.4:-17938643 MS.gene065179:CDS
GGTAGAAAATTAGCTCACAA+GGG 0.710711 2.4:-17939310 MS.gene065179:CDS
AGCCAAGGAAAGATGCATGG+AGG 0.724314 2.4:-17938573 MS.gene065179:CDS
AAGGTGGTGAGTGAGACATG+GGG 0.727439 2.4:-17940709 MS.gene065179:CDS
AAAGCGTATAGTCCTTCACA+CGG 0.761639 2.4:+17940674 None:intergenic
TGGCATGGGAAGAAATACTG+GGG 0.762911 2.4:-17939265 MS.gene065179:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTCATTATAAAAAAAAATAA+AGG + chr2.4:17940769-17940788 None:intergenic 10.0%
!!! CTTTATTTTTTTTTATAATG+AGG - chr2.4:17940767-17940786 MS.gene065179:intron 10.0%
!!! TTGTTTATGTATTATTTTTA+AGG - chr2.4:17939053-17939072 MS.gene065179:CDS 10.0%
!! AGAAAAAATGAAAATTATTG+TGG + chr2.4:17938664-17938683 None:intergenic 15.0%
!!! AATTTTCATTTTTTCTTTGT+GGG - chr2.4:17938668-17938687 MS.gene065179:CDS 15.0%
!!! TAATTTTCATTTTTTCTTTG+TGG - chr2.4:17938667-17938686 MS.gene065179:CDS 15.0%
!!! TTTATGTATTATTTTTAAGG+TGG - chr2.4:17939056-17939075 MS.gene065179:CDS 15.0%
!! AAACTTTGATTGTTCAATTT+AGG + chr2.4:17939912-17939931 None:intergenic 20.0%
!! CTAATTTCTTTACCATAATT+AGG - chr2.4:17940973-17940992 MS.gene065179:intron 20.0%
!! TATTAATTACGTTAAACAGA+TGG + chr2.4:17939590-17939609 None:intergenic 20.0%
!! TTCATCATAAACCATAAATT+TGG + chr2.4:17939542-17939561 None:intergenic 20.0%
!!! AAATTAAAAGCCAATTTTCA+TGG + chr2.4:17940409-17940428 None:intergenic 20.0%
!!! CAATTTCTGTTTTTTCATTT+TGG - chr2.4:17938698-17938717 MS.gene065179:CDS 20.0%
!!! TGTTAATATATTTTGTTGTC+TGG - chr2.4:17939794-17939813 MS.gene065179:intron 20.0%
!!! TTATGATGAATTTTGAAACA+TGG - chr2.4:17939552-17939571 MS.gene065179:CDS 20.0%
!!! TTTACCATAATTAGGTTTTT+GGG - chr2.4:17940981-17941000 MS.gene065179:intron 20.0%
! AATAAAGGGAAATATTACCT+CGG + chr2.4:17940754-17940773 None:intergenic 25.0%
! AATGCAATTTAGATGGTTTA+TGG - chr2.4:17939377-17939396 MS.gene065179:intron 25.0%
! AGTTGAACATCTGAAAATAA+TGG + chr2.4:17939478-17939497 None:intergenic 25.0%
! GATTTCTGTACAATTAAATG+TGG - chr2.4:17939324-17939343 MS.gene065179:CDS 25.0%
! TAATGAAGTTACATTGGTAT+TGG + chr2.4:17939432-17939451 None:intergenic 25.0%
! TCACATAAATGCTTATGTAT+AGG + chr2.4:17939002-17939021 None:intergenic 25.0%
! TCATTCTTAAACAAGCATAT+CGG - chr2.4:17940287-17940306 MS.gene065179:intron 25.0%
! TCCAATTTACACATGAATTT+CGG - chr2.4:17940153-17940172 MS.gene065179:intron 25.0%
! TGCAAAAATGCAATTCAATT+AGG + chr2.4:17938821-17938840 None:intergenic 25.0%
! TTTATCCTTAGGATTAAGTT+AGG - chr2.4:17939844-17939863 MS.gene065179:intron 25.0%
! TTTATGCTTGAAGATTGTTA+AGG - chr2.4:17939203-17939222 MS.gene065179:CDS 25.0%
!! CTTTACCATAATTAGGTTTT+TGG - chr2.4:17940980-17940999 MS.gene065179:intron 25.0%
!! TGTGTTTTCTAATTCTTCTT+AGG - chr2.4:17938795-17938814 MS.gene065179:intron 25.0%
!! TTACCATAATTAGGTTTTTG+GGG - chr2.4:17940982-17941001 MS.gene065179:intron 25.0%
!!! GTTAAACTTCTTTTTCGTAT+TGG - chr2.4:17940178-17940197 MS.gene065179:intron 25.0%
!!! TCTGTTTTTTCATTTTGGTT+AGG - chr2.4:17938703-17938722 MS.gene065179:CDS 25.0%
AGATGGTTTATGGATATATC+AGG - chr2.4:17939387-17939406 MS.gene065179:intron 30.0%
AGTGGTTAATGCAATTTAGA+TGG - chr2.4:17939370-17939389 MS.gene065179:intron 30.0%
ATACCTCTTTGAATTGTCTA+AGG + chr2.4:17940095-17940114 None:intergenic 30.0%
ATTAAAAATCGTTTCTCGAG+TGG - chr2.4:17940636-17940655 MS.gene065179:CDS 30.0%
ATTAACCACAAATTTGAACG+TGG - chr2.4:17939448-17939467 MS.gene065179:intron 30.0%
ATTTGAACACCTGGAAATTA+TGG - chr2.4:17939506-17939525 MS.gene065179:CDS 30.0%
CATATTCAAATACAAGCTTC+AGG - chr2.4:17940809-17940828 MS.gene065179:intron 30.0%
CATTTCCTAACTTAATCCTA+AGG + chr2.4:17939852-17939871 None:intergenic 30.0%
CCAATTTACACATGAATTTC+GGG - chr2.4:17940154-17940173 MS.gene065179:intron 30.0%
CTGAAGCTTGTATTTGAATA+TGG + chr2.4:17940811-17940830 None:intergenic 30.0%
CTTAAAGACATGTCATAAGT+TGG + chr2.4:17938874-17938893 None:intergenic 30.0%
CTTAGGATTAAGTTAGGAAA+TGG - chr2.4:17939850-17939869 MS.gene065179:intron 30.0%
GTCAATGACATCCAAATTTA+TGG - chr2.4:17939528-17939547 MS.gene065179:CDS 30.0%
GTTATAACTTCATCCACAAT+TGG + chr2.4:17940447-17940466 None:intergenic 30.0%
TACGTTAAACAGATGGTTTA+TGG + chr2.4:17939583-17939602 None:intergenic 30.0%
TATACCTTTCTAGACATGAT+TGG - chr2.4:17941274-17941293 MS.gene065179:CDS 30.0%
TATCCCCAAAAACCTAATTA+TGG + chr2.4:17940988-17941007 None:intergenic 30.0%
TCAGGTTTGTGCAAATTTAT+CGG + chr2.4:17940859-17940878 None:intergenic 30.0%
TGTGGTTAATGAAGTTACAT+TGG + chr2.4:17939438-17939457 None:intergenic 30.0%
TTACCTTAGACAATTCAAAG+AGG - chr2.4:17940089-17940108 MS.gene065179:intron 30.0%
! AGGAATTATGAACGTTTTGA+TGG - chr2.4:17940557-17940576 MS.gene065179:CDS 30.0%
! ATTTTGCAGTGTTCATTGTA+TGG - chr2.4:17940888-17940907 MS.gene065179:intron 30.0%
! TCCTTTACATCATATTGACT+CGG + chr2.4:17940835-17940854 None:intergenic 30.0%
! TTTAAAACTACGCCTTACAA+CGG + chr2.4:17939296-17939315 None:intergenic 30.0%
! TTTTTGACAGAAACCAATTG+TGG - chr2.4:17940431-17940450 MS.gene065179:intron 30.0%
!! ATAATTAGGTTTTTGGGGAT+AGG - chr2.4:17940987-17941006 MS.gene065179:intron 30.0%
!! TAATTAGGTTTTTGGGGATA+GGG - chr2.4:17940988-17941007 MS.gene065179:intron 30.0%
!!! CGTATTGGTGCTTTTATTTT+TGG - chr2.4:17940193-17940212 MS.gene065179:intron 30.0%
AAGGCATATGTTCTTCATCA+TGG - chr2.4:17940340-17940359 MS.gene065179:intron 35.0%
ACTAAGATCATCCACATTCT+TGG + chr2.4:17939184-17939203 None:intergenic 35.0%
AGACCTTCGAATAAGGAATA+AGG + chr2.4:17941241-17941260 None:intergenic 35.0%
AGCACTTCACTTCAAACAAT+TGG - chr2.4:17938634-17938653 MS.gene065179:CDS 35.0%
ATCAAAGTTTCAGCCTGAAA+TGG - chr2.4:17939922-17939941 MS.gene065179:intron 35.0%
ATTCTGCTTCAGCAAATTCA+AGG - chr2.4:17939232-17939251 MS.gene065179:CDS 35.0%
ATTTGCTCGTGTTTATCCTT+AGG - chr2.4:17939833-17939852 MS.gene065179:intron 35.0%
CAACGAAATTTAGACAGCTT+TGG + chr2.4:17939651-17939670 None:intergenic 35.0%
CAAGTTAGAAACTTTCACGT+TGG - chr2.4:17938728-17938747 MS.gene065179:CDS 35.0%
CCCGAAATTCATGTGTAAAT+TGG + chr2.4:17940157-17940176 None:intergenic 35.0%
CTGCCATACAATAACTCATA+GGG + chr2.4:17940245-17940264 None:intergenic 35.0%
CTTTGATGTATGAATGGCAT+GGG - chr2.4:17940502-17940521 MS.gene065179:intron 35.0%
GACCTTCGAATAAGGAATAA+GGG + chr2.4:17941240-17941259 None:intergenic 35.0%
GATGTCCTTTGATGTATGAA+TGG - chr2.4:17940496-17940515 MS.gene065179:intron 35.0%
GGTAGAAAATTAGCTCACAA+GGG - chr2.4:17940471-17940490 MS.gene065179:intron 35.0%
GTACAGAGAAAGAAAGACAT+AGG + chr2.4:17941107-17941126 None:intergenic 35.0%
GTTAACCACGTTCAAATTTG+TGG + chr2.4:17939456-17939475 None:intergenic 35.0%
TACTCTCTATTTCATGCATC+TGG - chr2.4:17939255-17939274 MS.gene065179:CDS 35.0%
TATTCCTTATTCGAAGGTCT+TGG - chr2.4:17941241-17941260 MS.gene065179:CDS 35.0%
TCAAAGTTTCAGCCTGAAAT+GGG - chr2.4:17939923-17939942 MS.gene065179:intron 35.0%
TCTGCCATACAATAACTCAT+AGG + chr2.4:17940246-17940265 None:intergenic 35.0%
TGGTAGAAAATTAGCTCACA+AGG - chr2.4:17940470-17940489 MS.gene065179:intron 35.0%
TGTCATTGACCATAATTTCC+AGG + chr2.4:17939518-17939537 None:intergenic 35.0%
TTAAATGTGGACAACTTTCG+CGG - chr2.4:17939337-17939356 MS.gene065179:CDS 35.0%
TTGCCCTATGAGTTATTGTA+TGG - chr2.4:17940239-17940258 MS.gene065179:intron 35.0%
TTGGCTACATCTTCTATAAG+TGG + chr2.4:17939632-17939651 None:intergenic 35.0%
TTTCACGTTGGTGCAATAAT+GGG - chr2.4:17938740-17938759 MS.gene065179:CDS 35.0%
! TGAAGTTACATTGGTATTGG+TGG + chr2.4:17939429-17939448 None:intergenic 35.0%
!! AAACAAGGAGTACTTGTACA+GGG - chr2.4:17941138-17941157 MS.gene065179:intron 35.0%
!! AACGGCATACTTGGTTTTTA+AGG - chr2.4:17939146-17939165 MS.gene065179:CDS 35.0%
!! TATGAACGTTTTGATGGACA+TGG - chr2.4:17940563-17940582 MS.gene065179:CDS 35.0%
!! TGCTGTAGTTTGTAGTTTTG+AGG + chr2.4:17938618-17938637 None:intergenic 35.0%
!! TTTCGCGGTAACTTTTTAAG+TGG - chr2.4:17939352-17939371 MS.gene065179:intron 35.0%
AAAGCGTATAGTCCTTCACA+CGG + chr2.4:17939110-17939129 None:intergenic 40.0%
AACTCATAGGGCAAATCAGT+GGG + chr2.4:17940233-17940252 None:intergenic 40.0%
AATGGCATGGGAAGAAATAC+TGG - chr2.4:17940514-17940533 MS.gene065179:intron 40.0%
ATGAATGGTGGCAAGTTGTT+CGG + chr2.4:17938491-17938510 None:intergenic 40.0%
ATGGCAGAACAGGTTACTTA+TGG - chr2.4:17940258-17940277 MS.gene065179:intron 40.0%
ATGGCATGGGAAGAAATACT+GGG - chr2.4:17940515-17940534 MS.gene065179:intron 40.0%
CATCCACATTCTTGGTTACT+TGG + chr2.4:17939176-17939195 None:intergenic 40.0%
CCATGCCATTCATACATCAA+AGG + chr2.4:17940504-17940523 None:intergenic 40.0%
CCTTTGATGTATGAATGGCA+TGG - chr2.4:17940501-17940520 MS.gene065179:intron 40.0%
CTACCAAGTAACCAAGAATG+TGG - chr2.4:17939170-17939189 MS.gene065179:CDS 40.0%
CTGCAAAATCCATTGCAATC+AGG + chr2.4:17940877-17940896 None:intergenic 40.0%
CTTTCACGTTGGTGCAATAA+TGG - chr2.4:17938739-17938758 MS.gene065179:CDS 40.0%
CTTTCTCTGTACAGATTGAC+AGG - chr2.4:17941115-17941134 MS.gene065179:intron 40.0%
GAAGGACTATACGCTTTACA+CGG - chr2.4:17939113-17939132 MS.gene065179:CDS 40.0%
GACTTAACTTAGCCGTTGTA+AGG - chr2.4:17939281-17939300 MS.gene065179:CDS 40.0%
GAGTTATTGTATGGCAGAAC+AGG - chr2.4:17940248-17940267 MS.gene065179:intron 40.0%
GCCGAGTCAATATGATGTAA+AGG - chr2.4:17940831-17940850 MS.gene065179:intron 40.0%
GTACAGATTGACAGGAAACA+AGG - chr2.4:17941123-17941142 MS.gene065179:intron 40.0%
GTGGATGAAGTTATAACAGC+TGG - chr2.4:17940450-17940469 MS.gene065179:intron 40.0%
GTGGTTAATGCACTTCGAAT+AGG + chr2.4:17939613-17939632 None:intergenic 40.0%
GTGTTTGGTAAGGTAGAGAA+AGG + chr2.4:17938592-17938611 None:intergenic 40.0%
TAACTCATAGGGCAAATCAG+TGG + chr2.4:17940234-17940253 None:intergenic 40.0%
TCCAGGTGTTCAAATCTACA+TGG + chr2.4:17939501-17939520 None:intergenic 40.0%
TCCATGTAGATTTGAACACC+TGG - chr2.4:17939497-17939516 MS.gene065179:CDS 40.0%
TGGACCAATCATGTCTAGAA+AGG + chr2.4:17941281-17941300 None:intergenic 40.0%
TGGCAGAACAGGTTACTTAT+GGG - chr2.4:17940259-17940278 MS.gene065179:intron 40.0%
TTGCACAAACCTGATTGCAA+TGG - chr2.4:17940865-17940884 MS.gene065179:intron 40.0%
! TGTTCTTCAAGTGTTGTCTC+TGG + chr2.4:17938515-17938534 None:intergenic 40.0%
! TTTGAGGTGAGTGTTTGGTA+AGG + chr2.4:17938602-17938621 None:intergenic 40.0%
!! GAAACAAGGAGTACTTGTAC+AGG - chr2.4:17941137-17941156 MS.gene065179:intron 40.0%
!! TGTCGACTTGCCATGAAAAT+TGG - chr2.4:17940396-17940415 MS.gene065179:intron 40.0%
!!! GTAGTTTTGAGGTGAGTGTT+TGG + chr2.4:17938607-17938626 None:intergenic 40.0%
AAATGGGAGGATGGGAAGTA+AGG - chr2.4:17939939-17939958 MS.gene065179:intron 45.0%
AAGATGCAGGAGAAGTAGTG+TGG - chr2.4:17941029-17941048 MS.gene065179:intron 45.0%
AAGTTTCAGCCTGAAATGGG+AGG - chr2.4:17939926-17939945 MS.gene065179:intron 45.0%
AATCTGACCGTCTTGTGCAT+TGG - chr2.4:17940685-17940704 MS.gene065179:CDS 45.0%
ACAAGCGTAAGAGTTACTCC+AGG + chr2.4:17940723-17940742 None:intergenic 45.0%
AGATGAGGTGGAAGATGTCA+AGG - chr2.4:17940596-17940615 MS.gene065179:CDS 45.0%
AGATTCACTTCCTTCACTGG+AGG + chr2.4:17940670-17940689 None:intergenic 45.0%
AGGAGAAGTAGTGTGGAAGA+GGG - chr2.4:17941036-17941055 MS.gene065179:intron 45.0%
AGTGTTGTCTCTGGCATGAA+TGG + chr2.4:17938506-17938525 None:intergenic 45.0%
ATCAGCCAAGGAAAGATGCA+TGG - chr2.4:17941205-17941224 MS.gene065179:CDS 45.0%
ATTCGAAGGTCTTGGAGGAA+TGG - chr2.4:17941249-17941268 MS.gene065179:CDS 45.0%
CACAATACCCACTACCTACA+CGG - chr2.4:17940316-17940335 MS.gene065179:intron 45.0%
CATGGAACTTAAGCCAGATG+AGG - chr2.4:17940581-17940600 MS.gene065179:CDS 45.0%
CGCCCTTATTCCTTATTCGA+AGG - chr2.4:17941235-17941254 MS.gene065179:CDS 45.0%
GAACATATGCCTTACCGTGT+AGG + chr2.4:17940333-17940352 None:intergenic 45.0%
GAGTACTTGTACAGGGCTAA+AGG - chr2.4:17941145-17941164 MS.gene065179:intron 45.0%
GATGAGGTGGAAGATGTCAA+GGG - chr2.4:17940597-17940616 MS.gene065179:CDS 45.0%
GATTCACTTCCTTCACTGGA+GGG + chr2.4:17940669-17940688 None:intergenic 45.0%
GCTGTTATAGCTAAGCAAGC+TGG - chr2.4:17940045-17940064 MS.gene065179:intron 45.0%
GTAAGGTAGAGAAAGGAGTG+AGG + chr2.4:17938585-17938604 None:intergenic 45.0%
GTCAGATTCACTTCCTTCAC+TGG + chr2.4:17940673-17940692 None:intergenic 45.0%
TAAGGTGGTGAGTGAGACAT+GGG - chr2.4:17939071-17939090 MS.gene065179:CDS 45.0%
TCCTCCAAGACCTTCGAATA+AGG + chr2.4:17941248-17941267 None:intergenic 45.0%
TCCTTATTCGAAGGTCTTGG+AGG - chr2.4:17941244-17941263 MS.gene065179:CDS 45.0%
TGGCATGGGAAGAAATACTG+GGG - chr2.4:17940516-17940535 MS.gene065179:intron 45.0%
TTAAGGTGGTGAGTGAGACA+TGG - chr2.4:17939070-17939089 MS.gene065179:CDS 45.0%
TTGACATCTTCCACCTCATC+TGG + chr2.4:17940597-17940616 None:intergenic 45.0%
! AAGCGAGTTGGAATTTGCCA+CGG - chr2.4:17941067-17941086 MS.gene065179:intron 45.0%
! AGACATGATTGGTCCACAAG+TGG - chr2.4:17941285-17941304 MS.gene065179:CDS 45.0%
! TAGGGAATTTTCGCAAGCAG+CGG - chr2.4:17941006-17941025 MS.gene065179:intron 45.0%
!! ACGTTGGTGCAATAATGGGT+CGG - chr2.4:17938744-17938763 MS.gene065179:CDS 45.0%
!! TGGTGTTGGTGTTTGAGAAG+AGG + chr2.4:17938552-17938571 None:intergenic 45.0%
!! TCATTATAAAAAAAAATAAA+GGG + chr2.4:17940768-17940787 None:intergenic 5.0%
AAGGTGGTGAGTGAGACATG+GGG - chr2.4:17939072-17939091 MS.gene065179:CDS 50.0%
ACTTCCCATCCTCCCATTTC+AGG + chr2.4:17939938-17939957 None:intergenic 50.0%
AGCCAAGGAAAGATGCATGG+AGG - chr2.4:17941208-17941227 MS.gene065179:CDS 50.0%
AGGGGTCTTCTTAAGCGAGT+TGG - chr2.4:17941055-17941074 MS.gene065179:intron 50.0%
ATGCCTTACCGTGTAGGTAG+TGG + chr2.4:17940327-17940346 None:intergenic 50.0%
CAGGAGAAGTAGTGTGGAAG+AGG - chr2.4:17941035-17941054 MS.gene065179:intron 50.0%
CGTGACACCAATGCACAAGA+CGG + chr2.4:17940695-17940714 None:intergenic 50.0%
CTCCTCCATGCATCTTTCCT+TGG + chr2.4:17941213-17941232 None:intergenic 50.0%
GAATTTGCCACGGCATCAGT+GGG - chr2.4:17941077-17941096 MS.gene065179:intron 50.0%
GCGCAAGAATTGATCAGCCA+AGG - chr2.4:17941193-17941212 MS.gene065179:CDS 50.0%
GGAACTTAAGCCAGATGAGG+TGG - chr2.4:17940584-17940603 MS.gene065179:CDS 50.0%
GGACTATACGCTTTACACGG+CGG - chr2.4:17939116-17939135 MS.gene065179:CDS 50.0%
GGAGAAGTAGTGTGGAAGAG+GGG - chr2.4:17941037-17941056 MS.gene065179:intron 50.0%
GGCAATTATCCCTCCAGTGA+AGG - chr2.4:17940657-17940676 MS.gene065179:CDS 50.0%
GGTTCTTGGAACGGCATACT+TGG - chr2.4:17939137-17939156 MS.gene065179:CDS 50.0%
GTTGTCTCTGGCATGAATGG+TGG + chr2.4:17938503-17938522 None:intergenic 50.0%
TACCCACTACCTACACGGTA+AGG - chr2.4:17940321-17940340 MS.gene065179:intron 50.0%
TACGCTTGTAAAAGCAGCCG+AGG - chr2.4:17940734-17940753 MS.gene065179:intron 50.0%
TCAGCCTGAAATGGGAGGAT+GGG - chr2.4:17939931-17939950 MS.gene065179:intron 50.0%
TGCCTTACCGTGTAGGTAGT+GGG + chr2.4:17940326-17940345 None:intergenic 50.0%
TTACACGGCGGTTCTTGGAA+CGG - chr2.4:17939128-17939147 MS.gene065179:CDS 50.0%
TTCAGCCTGAAATGGGAGGA+TGG - chr2.4:17939930-17939949 MS.gene065179:intron 50.0%
TTCTAGTGGGAACCGTGTGA+AGG - chr2.4:17939095-17939114 MS.gene065179:CDS 50.0%
! AGCACCAAGAGCACAAACAC+CGG + chr2.4:17940028-17940047 None:intergenic 50.0%
! AGTGAGACATGGGGTTCTAG+TGG - chr2.4:17939081-17939100 MS.gene065179:CDS 50.0%
! GTGAGACATGGGGTTCTAGT+GGG - chr2.4:17939082-17939101 MS.gene065179:CDS 50.0%
! TGATTGGTCCACAAGTGGCT+AGG - chr2.4:17941290-17941309 MS.gene065179:CDS 50.0%
!! AAATACTGGGGTGCTGCTCA+TGG - chr2.4:17940528-17940547 MS.gene065179:intron 50.0%
!! CGTCTTGTGCATTGGTGTCA+CGG - chr2.4:17940693-17940712 MS.gene065179:CDS 50.0%
ACGCTTTACACGGCGGTTCT+TGG - chr2.4:17939123-17939142 MS.gene065179:CDS 55.0%
AGGAGTGAGGTGAGAGAGTG+TGG + chr2.4:17938572-17938591 None:intergenic 55.0%
GGAATTTGCCACGGCATCAG+TGG - chr2.4:17941076-17941095 MS.gene065179:intron 55.0%
TGGGAGGATGGGAAGTAAGG+TGG - chr2.4:17939942-17939961 MS.gene065179:intron 55.0%
! CAAGAGCACAAACACCGGCA+CGG + chr2.4:17940023-17940042 None:intergenic 55.0%
! GAGGTGAGAGAGTGTGGTGT+TGG + chr2.4:17938566-17938585 None:intergenic 55.0%
ACGTTCATCTGTGGCCGTGC+CGG - chr2.4:17940006-17940025 MS.gene065179:intron 60.0%
AGCCGCGTGACGTTCATCTG+TGG - chr2.4:17939997-17940016 MS.gene065179:intron 60.0%
AGGTGTTCCCACTGATGCCG+TGG + chr2.4:17941087-17941106 None:intergenic 60.0%
CCACAAGTGGCTAGGTTCCC+TGG - chr2.4:17941298-17941317 MS.gene065179:CDS 60.0%
CCAGGGAACCTAGCCACTTG+TGG + chr2.4:17941301-17941320 None:intergenic 60.0%
GGCCACAGATGAACGTCACG+CGG + chr2.4:17940002-17940021 None:intergenic 60.0%
TCGCAAGCAGCGGAAGATGC+AGG - chr2.4:17941016-17941035 MS.gene065179:intron 60.0%
! CGTGCCGGTGTTTGTGCTCT+TGG - chr2.4:17940021-17940040 MS.gene065179:intron 60.0%
!! CATTGGTGTCACGGTGCTCC+TGG - chr2.4:17940702-17940721 MS.gene065179:CDS 60.0%
!! GGTGCTGCTCATGGACTTGC+AGG - chr2.4:17940537-17940556 MS.gene065179:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 17938470 17941333 17938470 ID=MS.gene065179
chr2.4 mRNA 17938470 17941333 17938470 ID=MS.gene065179.t1;Parent=MS.gene065179
chr2.4 exon 17941148 17941333 17941148 ID=MS.gene065179.t1.exon1;Parent=MS.gene065179.t1
chr2.4 CDS 17941148 17941333 17941148 ID=cds.MS.gene065179.t1;Parent=MS.gene065179.t1
chr2.4 exon 17940550 17940728 17940550 ID=MS.gene065179.t1.exon2;Parent=MS.gene065179.t1
chr2.4 CDS 17940550 17940728 17940550 ID=cds.MS.gene065179.t1;Parent=MS.gene065179.t1
chr2.4 exon 17939693 17939804 17939693 ID=MS.gene065179.t1.exon3;Parent=MS.gene065179.t1
chr2.4 CDS 17939693 17939804 17939693 ID=cds.MS.gene065179.t1;Parent=MS.gene065179.t1
chr2.4 exon 17939466 17939582 17939466 ID=MS.gene065179.t1.exon4;Parent=MS.gene065179.t1
chr2.4 CDS 17939466 17939582 17939466 ID=cds.MS.gene065179.t1;Parent=MS.gene065179.t1
chr2.4 exon 17939048 17939362 17939048 ID=MS.gene065179.t1.exon5;Parent=MS.gene065179.t1
chr2.4 CDS 17939048 17939362 17939048 ID=cds.MS.gene065179.t1;Parent=MS.gene065179.t1
chr2.4 exon 17938470 17938808 17938470 ID=MS.gene065179.t1.exon6;Parent=MS.gene065179.t1
chr2.4 CDS 17938470 17938808 17938470 ID=cds.MS.gene065179.t1;Parent=MS.gene065179.t1
Gene Sequence

>MS.gene065179

ATGTCTGATCGGTTTTTTCCGAACAACTTGCCACCATTCATGCCAGAGACAACACTTGAAGAACAAGAAGCAGAAGCAACCTCTTCTCAAACACCAACACCACACTCTCTCACCTCACTCCTTTCTCTACCTTACCAAACACTCACCTCAAAACTACAAACTACAGCACTTCACTTCAAACAATTGGTACTCCACAATAATTTTCATTTTTTCTTTGTGGGTTTCTTTCAATTTCTGTTTTTTCATTTTGGTTAGGTTCAAGTTAGAAACTTTCACGTTGGTGCAATAATGGGTCGGTGTTTATTTGCTCACAAAGTGTTTGTGCTGTGTTTTCTAATTCTTCTTAGGCCTAATTGAATTGCATTTTTGCATTTATCTACTATTTGAAAGAGCTTATGAAACCAACTTATGACATGTCTTTAAGCTGTTTTTAGCTTATTTTCATACTCGCATGACTTATGAAAACAATTCATAACTTATATGATGTATAAATAGTTTGAATTTATTGTATCTTTTGTTAAAGAAATAACCTATACATAAGCATTTATGTGATAGACGCTTATCTTATAAGTATTTAACTAAGTTGTTTATGTATTATTTTTAAGGTGGTGAGTGAGACATGGGGTTCTAGTGGGAACCGTGTGAAGGACTATACGCTTTACACGGCGGTTCTTGGAACGGCATACTTGGTTTTTAAGGTCTACCAAGTAACCAAGAATGTGGATGATCTTAGTTTATGCTTGAAGATTGTTAAGGCTTGTGATTCTGCTTCAGCAAATTCAAGGTACTCTCTATTTCATGCATCTGGTAAGACTTAACTTAGCCGTTGTAAGGCGTAGTTTTAAAAGAGAAATGATTTCTGTACAATTAAATGTGGACAACTTTCGCGGTAACTTTTTAAGTGGTTAATGCAATTTAGATGGTTTATGGATATATCAGGTGTTGAAACTCATGTACCACCAATACCAATGTAACTTCATTAACCACAAATTTGAACGTGGTTAACCATTATTTTCAGATGTTCAACTCCATGTAGATTTGAACACCTGGAAATTATGGTCAATGACATCCAAATTTATGGTTTATGATGAATTTTGAAACATGGTATGTCCATAAACCATCTGTTTAACGTAATTAATACCTATTCGAAGTGCATTAACCACTTATAGAAGATGTAGCCAAAGCTGTCTAAATTTCGTTGTTCAAAATGTGCAACTGTTTTAAAATGCTCAGTTAGAGAATTTTAATTGTTAAGAATAGCTTGCTATGAATAGTTAGATTTTGAAGTATAATGACAATAGAACTGCTTGTGTATTAGCTTATCTGTTAATATATTTTGTTGTCTGGTTATGTTACTTGAGAAATTTGCTCGTGTTTATCCTTAGGATTAAGTTAGGAAATGGCTTAAACTGTAGTTTCAAACTTGTGTTTTGAAATCACCTAAATTGAACAATCAAAGTTTCAGCCTGAAATGGGAGGATGGGAAGTAAGGTGGTTTTAGTTTTATTTGCTAATGTATTGAGTTGCAGCCGCGTGACGTTCATCTGTGGCCGTGCCGGTGTTTGTGCTCTTGGTGCTGTTATAGCTAAGCAAGCTGGTGATGAGAGATTACTTGACTATTACCTTAGACAATTCAAAGAGGTATTTTGTTGTATTTATTTATGAATCACGATCTTATGATAGTCCAATTTACACATGAATTTCGGGTGTTAAACTTCTTTTTCGTATTGGTGCTTTTATTTTTGGAACAGATTGAGCTACCCACTGATTTGCCCTATGAGTTATTGTATGGCAGAACAGGTTACTTATGGGCTTGTTCATTCTTAAACAAGCATATCGGTAAAGACACAATACCCACTACCTACACGGTAAGGCATATGTTCTTCATCATGGCGTTCTTCTTTGCAATTTAACTTGTCAAAATCATGTCGACTTGCCATGAAAATTGGCTTTTAATTTAATTTTTGACAGAAACCAATTGTGGATGAAGTTATAACAGCTGGTAGAAAATTAGCTCACAAGGGAAGATGTCCTTTGATGTATGAATGGCATGGGAAGAAATACTGGGGTGCTGCTCATGGACTTGCAGGAATTATGAACGTTTTGATGGACATGGAACTTAAGCCAGATGAGGTGGAAGATGTCAAGGGTACGCTACGCTACATGATTAAAAATCGTTTCTCGAGTGGCAATTATCCCTCCAGTGAAGGAAGTGAATCTGACCGTCTTGTGCATTGGTGTCACGGTGCTCCTGGAGTAACTCTTACGCTTGTAAAAGCAGCCGAGGTAATATTTCCCTTTATTTTTTTTTATAATGAGGCAATATTCTCATTCGTTACCATATTCAAATACAAGCTTCAGGCCGAGTCAATATGATGTAAAGGAACCGATAAATTTGCACAAACCTGATTGCAATGGATTTTGCAGTGTTCATTGTATGGTGTACTTAAACAGTTAAACTGAAAGTGATCTTGACAATTCAATGAAAATTAAGATCACATGACTAATTTCTTTACCATAATTAGGTTTTTGGGGATAGGGAATTTTCGCAAGCAGCGGAAGATGCAGGAGAAGTAGTGTGGAAGAGGGGTCTTCTTAAGCGAGTTGGAATTTGCCACGGCATCAGTGGGAACACCTATGTCTTTCTTTCTCTGTACAGATTGACAGGAAACAAGGAGTACTTGTACAGGGCTAAAGGATTTTCTTGCTTTCTACTTGATAAAGCGCAAGAATTGATCAGCCAAGGAAAGATGCATGGAGGAGATCGCCCTTATTCCTTATTCGAAGGTCTTGGAGGAATGGCATATACCTTTCTAGACATGATTGGTCCACAAGTGGCTAGGTTCCCTGGCTATGAACTTTGA

Protein sequence

>MS.gene065179.t1

MSDRFFPNNLPPFMPETTLEEQEAEATSSQTPTPHSLTSLLSLPYQTLTSKLQTTALHFKQLVVSETWGSSGNRVKDYTLYTAVLGTAYLVFKVYQVTKNVDDLSLCLKIVKACDSASANSSRVTFICGRAGVCALGAVIAKQAGDERLLDYYLRQFKEIELPTDLPYELLYGRTGYLWACSFLNKHIGKDTIPTTYTKPIVDEVITAGRKLAHKGRCPLMYEWHGKKYWGAAHGLAGIMNVLMDMELKPDEVEDVKGTLRYMIKNRFSSGNYPSSEGSESDRLVHWCHGAPGVTLTLVKAAEVFGDREFSQAAEDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNKEYLYRAKGFSCFLLDKAQELISQGKMHGGDRPYSLFEGLGGMAYTFLDMIGPQVARFPGYEL