AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06526


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06526.t1 MTR_3g094070 97.970 591 12 0 1 591 1 591 0.0 1202
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06526.t1 AT2G40550 58.027 598 236 9 1 592 1 589 0.0 689

Find 158 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTTGACCAAGTCAGGTTT+TGG 0.243841 3.2:+78847853 None:intergenic
GCTCTGCTGATACGCCTATT+TGG 0.255149 3.2:-78849741 MS.gene06526:CDS
TCGGTTTCGTGGAATGATTC+AGG 0.295728 3.2:-78849957 MS.gene06526:CDS
AGACATCTCTCAGCTGTTCT+AGG 0.298551 3.2:-78847811 MS.gene06526:CDS
CTCTGCTGATACGCCTATTT+GGG 0.305209 3.2:-78849740 MS.gene06526:CDS
TTCCCCTGCCTCTCAGTCTC+AGG 0.325781 3.2:-78848603 MS.gene06526:CDS
CTGATGCCTTTGACCAAGTC+AGG 0.332760 3.2:+78847847 None:intergenic
CTTCTTTAAACAACCGCGAC+TGG 0.333640 3.2:-78850192 MS.gene06526:CDS
CGCCTCATGTGTTTAAGCTT+TGG 0.337640 3.2:-78846138 MS.gene06526:CDS
AGTGATTTATCAAATGGATT+TGG 0.344039 3.2:-78848271 MS.gene06526:CDS
TACATCTGATCCAGAGCTTC+AGG 0.346600 3.2:-78848308 MS.gene06526:CDS
AAAAGAATTATGATACAAAT+AGG 0.355812 3.2:-78847385 MS.gene06526:intron
TCACCAACCTGCTTAAATCT+TGG 0.359173 3.2:+78846258 None:intergenic
GTTGTTTATGCATAGGTTCC+GGG 0.372858 3.2:-78849508 MS.gene06526:intron
GAGATTGCTTTACTGTGTTC+CGG 0.373047 3.2:-78849713 MS.gene06526:intron
CGAAACCGAACAAGAGTATT+GGG 0.374415 3.2:+78849971 None:intergenic
GTGGAGGACCAATAAATTTA+CGG 0.375012 3.2:-78849794 MS.gene06526:CDS
TTGGCAAATGACCAAGGAAT+TGG 0.375411 3.2:-78846091 MS.gene06526:CDS
GAAGATAGTGATTTATCAAA+TGG 0.389010 3.2:-78848277 MS.gene06526:CDS
AATACTCTTGTTCGGTTTCG+TGG 0.391919 3.2:-78849968 MS.gene06526:CDS
AGCAGTTGGCAATCCATCTA+TGG 0.394157 3.2:-78849455 MS.gene06526:CDS
AAGCAGAAGCTTTGGAAGCT+TGG 0.402078 3.2:-78846804 MS.gene06526:CDS
AGCTGTGGAAGCAGAAGCTT+TGG 0.407257 3.2:-78846812 MS.gene06526:CDS
AGCAATCTCCGTTCCCAAAT+AGG 0.409820 3.2:+78849727 None:intergenic
GCCTTCTGCAACCATTTGCT+TGG 0.413431 3.2:-78846836 MS.gene06526:CDS
TGAGTGGGTACCTCTATCAT+AGG 0.419368 3.2:+78847989 None:intergenic
TCACAGGAAACTTTCAGTTC+AGG 0.423033 3.2:-78848029 MS.gene06526:CDS
GGGATCGGAACCGGTGGCTA+TGG 0.427343 3.2:+78850216 None:intergenic
TTCTTTAAACAACCGCGACT+GGG 0.428429 3.2:-78850191 MS.gene06526:CDS
CACCAACCTGCTTAAATCTT+GGG 0.428915 3.2:+78846259 None:intergenic
TTTGCCAATGTTCTAGTGAC+AGG 0.430670 3.2:+78846106 None:intergenic
CTGACTTGGTCAAAGGCATC+AGG 0.431219 3.2:-78847846 MS.gene06526:CDS
TTGCCAACTGCTTCTGCTGA+AGG 0.443463 3.2:+78849466 None:intergenic
TGAAACCCAATACTCTTGTT+CGG 0.443856 3.2:-78849976 MS.gene06526:CDS
AGTTTATTGTCTGGTCTCAA+TGG 0.449278 3.2:-78848548 MS.gene06526:CDS
TTCCACAGCTTCCAAGCAAA+TGG 0.452550 3.2:+78846825 None:intergenic
AGCAAAGAAACCGCGTCTAT+CGG 0.458757 3.2:-78847503 MS.gene06526:CDS
CAATGCTCCAGATTAGAAAC+TGG 0.460957 3.2:-78847280 MS.gene06526:intron
CAAGTACTACAAGATGGAAA+TGG 0.463233 3.2:-78846935 MS.gene06526:CDS
ATGAATCATACCTTGTCAGC+TGG 0.467749 3.2:+78848226 None:intergenic
TGTTCAAGTATTCCACTGTA+AGG 0.468020 3.2:+78847426 None:intergenic
TCGTTGTCCTCCTGAAGCTC+TGG 0.471222 3.2:+78848298 None:intergenic
TTCAGCTTCAGTTCAGACTC+TGG 0.472343 3.2:+78848358 None:intergenic
CTCATCTAGTTGTATTGTAA+AGG 0.476614 3.2:-78848522 MS.gene06526:intron
CTGATGTAATTGTACCTATC+CGG 0.478429 3.2:-78846858 MS.gene06526:CDS
GATGTGATTGGTCGGAGAGA+AGG 0.479336 3.2:+78850146 None:intergenic
TAAAGAAGTGGGATCGGAAC+CGG 0.480096 3.2:+78850207 None:intergenic
CTTACAGCCAAAACCTGACT+TGG 0.482514 3.2:-78847860 MS.gene06526:intron
GCGGAGTCTCTCCAATTCCT+TGG 0.483490 3.2:+78846080 None:intergenic
GCTCCCTGAGACTGAGAGGC+AGG 0.483876 3.2:+78848599 None:intergenic
TGAATACCCAAGATTTAAGC+AGG 0.484782 3.2:-78846265 MS.gene06526:intron
GGGTTTCACGTATCTGATAG+TGG 0.486104 3.2:+78849991 None:intergenic
TCTAGTATGAGTTTATTGTC+TGG 0.486602 3.2:-78848557 MS.gene06526:CDS
GGCTATGGCGGCGTCGAAGG+TGG 0.487183 3.2:+78850231 None:intergenic
ATACTAGAGCCAGCGATCTC+AGG 0.490063 3.2:+78848572 None:intergenic
ACGAAACCGAACAAGAGTAT+TGG 0.490164 3.2:+78849970 None:intergenic
CGACCAATCACATCTCTCTC+AGG 0.491453 3.2:-78850137 MS.gene06526:intron
AAATGTAATGGAGTTGCAAA+AGG 0.494363 3.2:-78847155 MS.gene06526:intron
TCAGATGTCCAATCCATAGA+TGG 0.495292 3.2:+78849442 None:intergenic
CTGAACAGATTGGTAACAAT+GGG 0.496519 3.2:-78846162 MS.gene06526:intron
AGCAAATGGTTGCAGAAGGC+CGG 0.497324 3.2:+78846839 None:intergenic
GTCGCGGTTGTTTAAAGAAG+TGG 0.500107 3.2:+78850195 None:intergenic
CAGAAGCTTTGGAAGCTTGG+AGG 0.501052 3.2:-78846801 MS.gene06526:CDS
GGTGGCTATGGCGGCGTCGA+AGG 0.503625 3.2:+78850228 None:intergenic
TTCTCCTAATACTAAAAGAA+TGG 0.508460 3.2:-78849155 MS.gene06526:intron
TCCCCTGCCTCTCAGTCTCA+GGG 0.509872 3.2:-78848602 MS.gene06526:CDS
TTGGCAATCCATCTATGGAT+TGG 0.510275 3.2:-78849450 MS.gene06526:CDS
ATAGGTACAATTACATCAGC+TGG 0.512462 3.2:+78846862 None:intergenic
TCAGAATAAGCCTATGATAG+AGG 0.514223 3.2:-78847999 MS.gene06526:intron
TTCACGTATCTGATAGTGGC+TGG 0.515371 3.2:+78849995 None:intergenic
ATGTATATTGAAGGATGGTT+CGG 0.516199 3.2:-78849818 MS.gene06526:intron
CAAAGAGAAAAGAGGAGGAG+AGG 0.518617 3.2:-78849418 MS.gene06526:CDS
TGAATCATACCTTGTCAGCT+GGG 0.518687 3.2:+78848227 None:intergenic
GTTGAGGGTGATGAGGTTGA+AGG 0.521584 3.2:-78849178 MS.gene06526:CDS
TCCTGTGAATAAAACAATGA+AGG 0.523148 3.2:+78848044 None:intergenic
GAAGCTCTGGATCAGATGTA+AGG 0.525588 3.2:+78848311 None:intergenic
GTTCAAGTATTCCACTGTAA+GGG 0.527633 3.2:+78847427 None:intergenic
AGGGTAGATGCTCTTGCTGT+GGG 0.529218 3.2:-78847554 MS.gene06526:CDS
GTATCAGCAGAGCAACCGAC+AGG 0.531241 3.2:+78849751 None:intergenic
TTGCCGCAATACAAGCAGAT+AGG 0.532247 3.2:-78846292 MS.gene06526:CDS
ATCGGAACCGGTGGCTATGG+CGG 0.532256 3.2:+78850219 None:intergenic
AACCATTTGCTTGGAAGCTG+TGG 0.536958 3.2:-78846827 MS.gene06526:CDS
GATGAGACACAATTAAAAGC+TGG 0.537791 3.2:-78847220 MS.gene06526:CDS
AGGTTCCGGGACTGAATTCG+TGG 0.538507 3.2:-78849495 MS.gene06526:CDS
AACTCACGATTCACGATGGT+GGG 0.539632 3.2:-78850298 None:intergenic
TCCCTGAGACTGAGAGGCAG+GGG 0.541900 3.2:+78848601 None:intergenic
CCACCCTGTCACTAGAACAT+TGG 0.543609 3.2:-78846110 MS.gene06526:CDS
TTTATTTATTCACAGGTTGA+GGG 0.544096 3.2:-78849193 MS.gene06526:intron
CCAAAACCTGACTTGGTCAA+AGG 0.549483 3.2:-78847853 MS.gene06526:CDS
AGCTGGAACTCTCAATTCTG+TGG 0.552721 3.2:-78847203 MS.gene06526:CDS
CTCCCTGAGACTGAGAGGCA+GGG 0.556116 3.2:+78848600 None:intergenic
ATGGTTGCAGAAGGCCGGAT+AGG 0.556436 3.2:+78846844 None:intergenic
AAGCTTTGGAAGCTTGGAGG+TGG 0.559758 3.2:-78846798 MS.gene06526:CDS
CTATCATAGGCTTATTCTGA+AGG 0.563882 3.2:+78848002 None:intergenic
TTACCTGAGAGAGATGTGAT+TGG 0.564128 3.2:+78850134 None:intergenic
TTCACAGGTTGAGGGTGATG+AGG 0.566027 3.2:-78849185 MS.gene06526:intron
TGAAGGATGGTTCGGTGTGG+AGG 0.566388 3.2:-78849810 MS.gene06526:intron
TCTCAACATTCCATCCCTGT+CGG 0.566421 3.2:-78849766 MS.gene06526:CDS
TCTGCCCACGAATTCAGTCC+CGG 0.568498 3.2:+78849490 None:intergenic
CAGGGTAGATGCTCTTGCTG+TGG 0.570066 3.2:-78847555 MS.gene06526:CDS
GCTGGAACTCTCAATTCTGT+GGG 0.571225 3.2:-78847202 MS.gene06526:CDS
TGGCGAGGAGATCGTACTGT+GGG 0.571872 3.2:+78850275 None:intergenic
GCACAAGGTTCTTGACAGCA+TGG 0.575018 3.2:+78847468 None:intergenic
TCTGAACAGATTGGTAACAA+TGG 0.575926 3.2:-78846163 MS.gene06526:intron
CCGCACCGAGTGGGTTGGCG+AGG 0.576164 3.2:+78850260 None:intergenic
TCGCGGTTGTTTAAAGAAGT+GGG 0.576680 3.2:+78850196 None:intergenic
GAACCTTCAGCAGAAGCAGT+TGG 0.578192 3.2:-78849469 MS.gene06526:CDS
TGGAGAGACTCCGCAGAGAG+AGG 0.581928 3.2:-78846071 MS.gene06526:CDS
TACAGCTCCCTGAGACTGAG+AGG 0.582470 3.2:+78848595 None:intergenic
GATCTCCTCGCCAACCCACT+CGG 0.583364 3.2:-78850265 MS.gene06526:CDS
AAGAACAGCATACCTTGGAT+AGG 0.585323 3.2:+78847749 None:intergenic
GTCAGCTGGGAAATGATGCA+AGG 0.588207 3.2:+78848240 None:intergenic
TGATTTCAAGTACTACAAGA+TGG 0.589781 3.2:-78846941 MS.gene06526:CDS
TTCAAGTATTCCACTGTAAG+GGG 0.590418 3.2:+78847428 None:intergenic
TTCGACGCCGCCATAGCCAC+CGG 0.590506 3.2:-78850226 MS.gene06526:CDS
AGCAGAGCAACCGACAGGGA+TGG 0.590945 3.2:+78849756 None:intergenic
GGAATGATTCAGGATATGCT+TGG 0.591067 3.2:-78849947 MS.gene06526:CDS
CTGATACGCCTATTTGGGAA+CGG 0.595457 3.2:-78849735 MS.gene06526:CDS
ACTCCTATCTGCTTGTATTG+CGG 0.595846 3.2:+78846289 None:intergenic
CCTCAGACAAAACTAACAGT+TGG 0.597317 3.2:+78846902 None:intergenic
GTTGTTTAAAGAAGTGGGAT+CGG 0.598531 3.2:+78850201 None:intergenic
CTGAGAGAGATGTGATTGGT+CGG 0.599783 3.2:+78850138 None:intergenic
GATCGATGACGCCCCAGTCG+CGG 0.601677 3.2:+78850179 None:intergenic
TCCAAGCAAATGGTTGCAGA+AGG 0.602079 3.2:+78846835 None:intergenic
TCTGACCGCACCGAGTGGGT+TGG 0.603273 3.2:+78850255 None:intergenic
TCTTTAAACAACCGCGACTG+GGG 0.604525 3.2:-78850190 MS.gene06526:CDS
GCATCATTTCCCAGCTGACA+AGG 0.607337 3.2:-78848236 MS.gene06526:intron
AGGGGTATGCAATGTGTGAA+AGG 0.607645 3.2:+78847446 None:intergenic
GTTGCTGCATCTCCTATCCA+AGG 0.611677 3.2:-78847761 MS.gene06526:intron
TTGCCAATGTTCTAGTGACA+GGG 0.613980 3.2:+78846107 None:intergenic
TCAGCTGGGAAATGATGCAA+GGG 0.615707 3.2:+78848241 None:intergenic
GGAGCTGTACCTGAGATCGC+TGG 0.616055 3.2:-78848581 MS.gene06526:CDS
TGACTTGGTCAAAGGCATCA+GGG 0.616560 3.2:-78847845 MS.gene06526:CDS
CACAGCAAGAGCATCTACCC+TGG 0.619097 3.2:+78847556 None:intergenic
CTGAGCAAAGAGAAAAGAGG+AGG 0.626217 3.2:-78849423 MS.gene06526:CDS
TTCACTTTAACCTCTCTCTG+CGG 0.632262 3.2:+78846061 None:intergenic
TGGATCTGACCGCACCGAGT+GGG 0.633931 3.2:+78850251 None:intergenic
GGGTAGATGCTCTTGCTGTG+GGG 0.634455 3.2:-78847553 MS.gene06526:CDS
GGTGTCTTGCAACTAGCTGA+AGG 0.634721 3.2:-78847259 MS.gene06526:CDS
TGCAATGTGTGAAAGGCACA+AGG 0.637195 3.2:+78847453 None:intergenic
ATTGGTCGGAGAGAAGGTTG+CGG 0.638343 3.2:+78850152 None:intergenic
TTGGCGAGGAGATCGTACTG+TGG 0.638733 3.2:+78850274 None:intergenic
AGAAGTGGGATCGGAACCGG+TGG 0.644638 3.2:+78850210 None:intergenic
CCTCGCCAACCCACTCGGTG+CGG 0.644714 3.2:-78850260 MS.gene06526:CDS
TGAATAAAACAATGAAGGCG+TGG 0.644813 3.2:+78848049 None:intergenic
CTGTGGGTGTAGAGAATGCA+AGG 0.645939 3.2:-78847186 MS.gene06526:CDS
GTTTCTGATTCAAAAGAGTG+TGG 0.646460 3.2:+78846751 None:intergenic
CATCTGAGCAAAGAGAAAAG+AGG 0.648196 3.2:-78849426 MS.gene06526:CDS
CACCAAAGCTTAAACACATG+AGG 0.649903 3.2:+78846136 None:intergenic
CCAATGTTCTAGTGACAGGG+TGG 0.654124 3.2:+78846110 None:intergenic
AGAACATTGGCAAATGACCA+AGG 0.660030 3.2:-78846097 MS.gene06526:CDS
ATCTGATCCAGAGCTTCAGG+AGG 0.667439 3.2:-78848305 MS.gene06526:CDS
ATAGTGGCTGGTGTGAGAAG+CGG 0.674090 3.2:+78850007 None:intergenic
GTGGATCTGACCGCACCGAG+TGG 0.677758 3.2:+78850250 None:intergenic
GGTTCCGGGACTGAATTCGT+GGG 0.683130 3.2:-78849494 MS.gene06526:CDS
ACATTGCATACCCCTTACAG+TGG 0.700005 3.2:-78847438 MS.gene06526:CDS
TATCAGCAGAGCAACCGACA+GGG 0.700346 3.2:+78849752 None:intergenic
TATTGAAGGATGGTTCGGTG+TGG 0.711545 3.2:-78849813 MS.gene06526:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAATTATGATACAAAT+AGG - chr3.2:78848960-78848979 MS.gene06526:intron 15.0%
!! AATGATTTCATAAATAAAAC+TGG + chr3.2:78847447-78847466 None:intergenic 15.0%
!! AATTAAATTCATAACACAAT+TGG + chr3.2:78847238-78847257 None:intergenic 15.0%
!! AGATACTAATATATTATTCT+AGG + chr3.2:78847277-78847296 None:intergenic 15.0%
!! TAGAGTTTAACTAATAATTA+GGG + chr3.2:78846288-78846307 None:intergenic 15.0%
!! TTAGAGTTTAACTAATAATT+AGG + chr3.2:78846289-78846308 None:intergenic 15.0%
!!! ATGTTTCTTTCATATATTTT+AGG - chr3.2:78846701-78846720 MS.gene06526:intron 15.0%
!!! TGTTTCTTTCATATATTTTA+GGG - chr3.2:78846702-78846721 MS.gene06526:intron 15.0%
!!! TTAACTTGTTTTTAATTTCA+TGG - chr3.2:78847904-78847923 MS.gene06526:intron 15.0%
!!! TTCAAAAATAGAGTTAATTT+TGG - chr3.2:78846496-78846515 MS.gene06526:intron 15.0%
!!! TTTAGATTTGTTAGAAATTA+TGG - chr3.2:78847301-78847320 MS.gene06526:intron 15.0%
!!! TTTAGTATTCTATTTAGTTT+AGG - chr3.2:78847476-78847495 MS.gene06526:CDS 15.0%
!!! TTTGTATCATAATTCTTTTT+TGG + chr3.2:78848959-78848978 None:intergenic 15.0%
!! AATGACATTTATTTATTCAC+AGG - chr3.2:78847145-78847164 MS.gene06526:intron 20.0%
!! AGAAAAATCCGTAAATTTAT+TGG + chr3.2:78846562-78846581 None:intergenic 20.0%
!! ATAAAACTGGTAAACTAAAT+AGG + chr3.2:78847434-78847453 None:intergenic 20.0%
!! ATGTACTTTCATTACTAAAT+TGG - chr3.2:78846741-78846760 MS.gene06526:intron 20.0%
!! ATTATGGATAACAAATATCT+TGG + chr3.2:78847378-78847397 None:intergenic 20.0%
!! GATGTATTCATTAAGAAAAA+TGG + chr3.2:78849948-78849967 None:intergenic 20.0%
!! GTGTTTACAAATAATAATGA+TGG + chr3.2:78849926-78849945 None:intergenic 20.0%
!! TAAAACTGGTAAACTAAATA+GGG + chr3.2:78847433-78847452 None:intergenic 20.0%
!! TGTAAACAATCAATAGAAAA+TGG + chr3.2:78849333-78849352 None:intergenic 20.0%
!!! TATTCTGTTCTTTTAAGAAT+TGG - chr3.2:78847684-78847703 MS.gene06526:intron 20.0%
! AACCTAATGAAGCATAATTA+GGG + chr3.2:78846318-78846337 None:intergenic 25.0%
! AACTGACTAATTTCAAAGTT+GGG - chr3.2:78849734-78849753 MS.gene06526:CDS 25.0%
! AGTATTTCCAATATATTCCT+GGG - chr3.2:78849840-78849859 MS.gene06526:intron 25.0%
! ATGAATAAATCCATTTGAGT+GGG + chr3.2:78848374-78848393 None:intergenic 25.0%
! ATTACAAACATTCTCAAGAA+TGG + chr3.2:78848738-78848757 None:intergenic 25.0%
! ATTACTAAATTGGAAAGAGA+TGG - chr3.2:78846751-78846770 MS.gene06526:CDS 25.0%
! ATTGAATAATAGTGTTTCCA+AGG - chr3.2:78846807-78846826 MS.gene06526:CDS 25.0%
! ATTTAGTCTCATCATTGTTT+AGG - chr3.2:78847850-78847869 MS.gene06526:CDS 25.0%
! ATTTATTTATTCACAGGTTG+AGG - chr3.2:78847151-78847170 MS.gene06526:intron 25.0%
! CAAAGTTAATGACAAACATT+TGG - chr3.2:78849361-78849380 MS.gene06526:intron 25.0%
! CATGTTAAAACTTATAAACC+AGG + chr3.2:78848243-78848262 None:intergenic 25.0%
! GAAGATAGTGATTTATCAAA+TGG - chr3.2:78848068-78848087 MS.gene06526:intron 25.0%
! GTAACCTAAAAATCTTTAAC+TGG + chr3.2:78849685-78849704 None:intergenic 25.0%
! GTCTATGGACATAAAAATTA+TGG + chr3.2:78847394-78847413 None:intergenic 25.0%
! GTGTTATGAATTTAATTGAC+TGG - chr3.2:78847241-78847260 MS.gene06526:CDS 25.0%
! GTTATGTCAATGTATATTGA+AGG - chr3.2:78846518-78846537 MS.gene06526:intron 25.0%
! TACTAAAAGAATGGTATGAA+TGG - chr3.2:78847199-78847218 MS.gene06526:CDS 25.0%
! TAGTATTTCCAATATATTCC+TGG - chr3.2:78849839-78849858 MS.gene06526:intron 25.0%
! TCATAAACTAAGGTTGTTTA+AGG - chr3.2:78849649-78849668 MS.gene06526:intron 25.0%
! TCTTAAAAGAACAGAATAGA+AGG + chr3.2:78847682-78847701 None:intergenic 25.0%
! TCTTGAGAATGTTTGTAATA+AGG - chr3.2:78848739-78848758 MS.gene06526:intron 25.0%
! TTCTCCTAATACTAAAAGAA+TGG - chr3.2:78847190-78847209 MS.gene06526:CDS 25.0%
! TTTAACAGTTGTTTATGCAT+AGG - chr3.2:78846830-78846849 MS.gene06526:CDS 25.0%
!! AACTACTTGAGTTTGATAAT+TGG - chr3.2:78847651-78847670 MS.gene06526:intron 25.0%
!! AGTGATTTATCAAATGGATT+TGG - chr3.2:78848074-78848093 MS.gene06526:intron 25.0%
!! CATACCATTCTTTTAGTATT+AGG + chr3.2:78847197-78847216 None:intergenic 25.0%
!! CTTGGAAATGAATTTTATGT+TGG - chr3.2:78846416-78846435 MS.gene06526:intron 25.0%
!! GTAACAGTTTTCATAAACTA+AGG - chr3.2:78849639-78849658 MS.gene06526:intron 25.0%
!! TGAACCAGTTAAAGATTTTT+AGG - chr3.2:78849678-78849697 MS.gene06526:intron 25.0%
!! TTTATTTATTCACAGGTTGA+GGG - chr3.2:78847152-78847171 MS.gene06526:intron 25.0%
!!! AATGACATTTTTGAGTTTGT+GGG - chr3.2:78848008-78848027 MS.gene06526:CDS 25.0%
AAACATTTGGTATGTGTTTC+AGG - chr3.2:78849374-78849393 MS.gene06526:intron 30.0%
AACCCTAATTATGCTTCATT+AGG - chr3.2:78846313-78846332 MS.gene06526:CDS 30.0%
AAGGTTGCTGAAAAATGTAA+TGG - chr3.2:78849178-78849197 MS.gene06526:CDS 30.0%
AATGCATAAATCACATGTGT+AGG + chr3.2:78848699-78848718 None:intergenic 30.0%
AATTATTCACATTTCTCTCG+AGG + chr3.2:78847029-78847048 None:intergenic 30.0%
ACAAGGAATGAACTCAATTA+AGG + chr3.2:78846997-78847016 None:intergenic 30.0%
AGTTAAATGTGCGTAATAGT+TGG - chr3.2:78847588-78847607 MS.gene06526:intron 30.0%
ATAAACTGGAAAAATACCAC+TGG + chr3.2:78847567-78847586 None:intergenic 30.0%
ATGTATATTGAAGGATGGTT+CGG - chr3.2:78846527-78846546 MS.gene06526:intron 30.0%
ATTCATAACACAATTGGAGT+TGG + chr3.2:78847232-78847251 None:intergenic 30.0%
CAAGGAATGAACTCAATTAA+GGG + chr3.2:78846996-78847015 None:intergenic 30.0%
CAATGCTTGAAAAGATAGAA+AGG + chr3.2:78848633-78848652 None:intergenic 30.0%
CATAAACAACTGTTAAACCT+TGG + chr3.2:78846827-78846846 None:intergenic 30.0%
CTCATCTAGTTGTATTGTAA+AGG - chr3.2:78847823-78847842 MS.gene06526:CDS 30.0%
GAAAGAGATGGATAATTTAG+TGG - chr3.2:78846763-78846782 MS.gene06526:CDS 30.0%
GAACCTAATGAAGCATAATT+AGG + chr3.2:78846319-78846338 None:intergenic 30.0%
GAACTGACTAATTTCAAAGT+TGG - chr3.2:78849733-78849752 MS.gene06526:CDS 30.0%
GATGAATAAATCCATTTGAG+TGG + chr3.2:78848375-78848394 None:intergenic 30.0%
GGATAACAAATATCTTGGTT+TGG + chr3.2:78847373-78847392 None:intergenic 30.0%
TCCTGTGAATAAAACAATGA+AGG + chr3.2:78848304-78848323 None:intergenic 30.0%
TCTAGTATGAGTTTATTGTC+TGG - chr3.2:78847788-78847807 MS.gene06526:CDS 30.0%
TGAAATCCAACAAAATGACT+TGG + chr3.2:78847062-78847081 None:intergenic 30.0%
TGTCAATGTATATTGAAGGA+TGG - chr3.2:78846522-78846541 MS.gene06526:intron 30.0%
TTCATAACACAATTGGAGTT+GGG + chr3.2:78847231-78847250 None:intergenic 30.0%
! AAATGTAATGGAGTTGCAAA+AGG - chr3.2:78849190-78849209 MS.gene06526:intron 30.0%
! ATTTTATGTTGGCGCTTTTA+AGG - chr3.2:78846427-78846446 MS.gene06526:intron 30.0%
! CGCACATTTAACTTATAAAC+TGG + chr3.2:78847581-78847600 None:intergenic 30.0%
! TCAAGCATTGTAAATGATCT+CGG - chr3.2:78848643-78848662 MS.gene06526:intron 30.0%
! TCTATTTAGTTTAGGAGTTC+TGG - chr3.2:78847484-78847503 MS.gene06526:CDS 30.0%
! TGATTTCAAGTACTACAAGA+TGG - chr3.2:78849404-78849423 MS.gene06526:CDS 30.0%
!! AACAAATATCTTGGTTTGGA+TGG + chr3.2:78847369-78847388 None:intergenic 30.0%
!! GTTTTAAGCTATGCATGTAT+AGG + chr3.2:78849804-78849823 None:intergenic 30.0%
!! TCAAGCATACTTAGTCTTTT+TGG - chr3.2:78849968-78849987 MS.gene06526:CDS 30.0%
!!! GAATGACATTTTTGAGTTTG+TGG - chr3.2:78848007-78848026 MS.gene06526:CDS 30.0%
AACTAGAGAAATCAGCAAAG+AGG + chr3.2:78849903-78849922 None:intergenic 35.0%
AAGCACATGCTATCTTATCA+AGG + chr3.2:78848462-78848481 None:intergenic 35.0%
AATGAACTCAATTAAGGGCA+AGG + chr3.2:78846991-78847010 None:intergenic 35.0%
ACAAACATTCTCAAGAATGG+AGG + chr3.2:78848735-78848754 None:intergenic 35.0%
ACACAACCATCCAAAAAGAA+AGG + chr3.2:78849239-78849258 None:intergenic 35.0%
ACAGAGGAAAATGAGGAAAT+GGG + chr3.2:78847945-78847964 None:intergenic 35.0%
AGCAATTAGCGTCTTGAATT+GGG - chr3.2:78848415-78848434 MS.gene06526:intron 35.0%
AGTTGTTTATGCATAGGTTC+CGG - chr3.2:78846836-78846855 MS.gene06526:CDS 35.0%
AGTTTATTGTCTGGTCTCAA+TGG - chr3.2:78847797-78847816 MS.gene06526:CDS 35.0%
ATAAGCTCCCAGGAATATAT+TGG + chr3.2:78849850-78849869 None:intergenic 35.0%
ATAGGTACAATTACATCAGC+TGG + chr3.2:78849486-78849505 None:intergenic 35.0%
CAAACATTCTCAAGAATGGA+GGG + chr3.2:78848734-78848753 None:intergenic 35.0%
CAAGTACTACAAGATGGAAA+TGG - chr3.2:78849410-78849429 MS.gene06526:CDS 35.0%
CATTGATCAAGTATCCTCAA+GGG + chr3.2:78848145-78848164 None:intergenic 35.0%
CTATCATAGGCTTATTCTGA+AGG + chr3.2:78848346-78848365 None:intergenic 35.0%
CTATTAAGAACAGCATACCT+TGG + chr3.2:78848604-78848623 None:intergenic 35.0%
CTGATGTAATTGTACCTATC+CGG - chr3.2:78849487-78849506 MS.gene06526:CDS 35.0%
GAGTTTGTATGCTAAGAGTA+AGG + chr3.2:78849711-78849730 None:intergenic 35.0%
GATGAGACACAATTAAAAGC+TGG - chr3.2:78849125-78849144 MS.gene06526:intron 35.0%
GTGGAGGACCAATAAATTTA+CGG - chr3.2:78846551-78846570 MS.gene06526:intron 35.0%
GTTCAAGTATTCCACTGTAA+GGG + chr3.2:78848921-78848940 None:intergenic 35.0%
GTTGTTTAAAGAAGTGGGAT+CGG + chr3.2:78846147-78846166 None:intergenic 35.0%
GTTTCTGATTCAAAAGAGTG+TGG + chr3.2:78849597-78849616 None:intergenic 35.0%
TACAGAGGAAAATGAGGAAA+TGG + chr3.2:78847946-78847965 None:intergenic 35.0%
TACTCTTAGCATACAAACTC+AGG - chr3.2:78849711-78849730 MS.gene06526:intron 35.0%
TAGCAATTAGCGTCTTGAAT+TGG - chr3.2:78848414-78848433 MS.gene06526:intron 35.0%
TCAGAATAAGCCTATGATAG+AGG - chr3.2:78848346-78848365 MS.gene06526:CDS 35.0%
TCATTGATCAAGTATCCTCA+AGG + chr3.2:78848146-78848165 None:intergenic 35.0%
TGAAACCCAATACTCTTGTT+CGG - chr3.2:78846369-78846388 MS.gene06526:intron 35.0%
TGAATAAAACAATGAAGGCG+TGG + chr3.2:78848299-78848318 None:intergenic 35.0%
TGAATACCCAAGATTTAAGC+AGG - chr3.2:78850080-78850099 MS.gene06526:intron 35.0%
TGTTCAAGTATTCCACTGTA+AGG + chr3.2:78848922-78848941 None:intergenic 35.0%
TTATTACTACCTCCATGTGT+TGG - chr3.2:78847619-78847638 MS.gene06526:intron 35.0%
TTCAAGTATTCCACTGTAAG+GGG + chr3.2:78848920-78848939 None:intergenic 35.0%
! AGCTTTCCTTTCTTTTTGGA+TGG - chr3.2:78849230-78849249 MS.gene06526:intron 35.0%
! ATAAGCCTTTGCACTGTTTT+GGG - chr3.2:78850003-78850022 MS.gene06526:CDS 35.0%
! CATTTTACCCTCTAAATTGC+AGG - chr3.2:78848271-78848290 MS.gene06526:CDS 35.0%
! CTGAACAGATTGGTAACAAT+GGG - chr3.2:78850183-78850202 MS.gene06526:CDS 35.0%
! GTACTGAATAACTGACTCAT+AGG - chr3.2:78847540-78847559 MS.gene06526:CDS 35.0%
! TATAAGCCTTTGCACTGTTT+TGG - chr3.2:78850002-78850021 MS.gene06526:CDS 35.0%
! TATGCATGTATAGGTTGAAG+TGG + chr3.2:78849795-78849814 None:intergenic 35.0%
! TATGGCTGATATTTTGCTCA+AGG - chr3.2:78847319-78847338 MS.gene06526:intron 35.0%
! TCTGAACAGATTGGTAACAA+TGG - chr3.2:78850182-78850201 MS.gene06526:CDS 35.0%
! TTTTGAATCAGAAACTCAGC+AGG - chr3.2:78849602-78849621 MS.gene06526:intron 35.0%
!! CCAACAAAATGACTTGGTAA+AGG + chr3.2:78847056-78847075 None:intergenic 35.0%
!! CCTTTACCAAGTCATTTTGT+TGG - chr3.2:78847053-78847072 MS.gene06526:intron 35.0%
!! CTCTTACTTTTACAGAGAGA+AGG - chr3.2:78847710-78847729 MS.gene06526:intron 35.0%
!! GCCTTCATTGTTTTATTCAC+AGG - chr3.2:78848300-78848319 MS.gene06526:CDS 35.0%
!!! AACTGTTAGTTTTGTCTGAG+GGG - chr3.2:78849445-78849464 MS.gene06526:CDS 35.0%
!!! CAACTGTTAGTTTTGTCTGA+GGG - chr3.2:78849444-78849463 MS.gene06526:CDS 35.0%
!!! GTCTAGCTTTCCTTTCTTTT+TGG - chr3.2:78849226-78849245 MS.gene06526:intron 35.0%
AACAAAAGGTCAGGGAAGAA+AGG + chr3.2:78850151-78850170 None:intergenic 40.0%
AACATTAGAGCGACGAGAAA+TGG + chr3.2:78846666-78846685 None:intergenic 40.0%
AAGAACAGCATACCTTGGAT+AGG + chr3.2:78848599-78848618 None:intergenic 40.0%
AAGGGCAAGGAAGAAATTAC+AGG + chr3.2:78846978-78846997 None:intergenic 40.0%
AAGGTATGATTCATCCCTTG+AGG - chr3.2:78848128-78848147 MS.gene06526:intron 40.0%
AATACTCTTGTTCGGTTTCG+TGG - chr3.2:78846377-78846396 MS.gene06526:intron 40.0%
AATGCAAACTATAAGCTCCC+AGG + chr3.2:78849860-78849879 None:intergenic 40.0%
AGAACATTGGCAAATGACCA+AGG - chr3.2:78850248-78850267 MS.gene06526:CDS 40.0%
ATATACCTAGCATGGTACAG+AGG + chr3.2:78847961-78847980 None:intergenic 40.0%
ATGAATCATACCTTGTCAGC+TGG + chr3.2:78848122-78848141 None:intergenic 40.0%
ATTTCAAAGTTGGGCAGAAG+TGG - chr3.2:78849743-78849762 MS.gene06526:CDS 40.0%
CAAGACACCAGTTTCTAATC+TGG + chr3.2:78849075-78849094 None:intergenic 40.0%
CAATCTGTTCAGAGAAGGTA+GGG + chr3.2:78850175-78850194 None:intergenic 40.0%
CAATGCTCCAGATTAGAAAC+TGG - chr3.2:78849065-78849084 MS.gene06526:intron 40.0%
CACCAAAGCTTAAACACATG+AGG + chr3.2:78850212-78850231 None:intergenic 40.0%
CACCAACCTGCTTAAATCTT+GGG + chr3.2:78850089-78850108 None:intergenic 40.0%
CATCTGAGCAAAGAGAAAAG+AGG - chr3.2:78846919-78846938 MS.gene06526:CDS 40.0%
CATTTGGTATGTGTTTCAGG+TGG - chr3.2:78849377-78849396 MS.gene06526:intron 40.0%
CCTCAGACAAAACTAACAGT+TGG + chr3.2:78849446-78849465 None:intergenic 40.0%
CTAAATCACTTTCTACCACC+TGG + chr3.2:78850033-78850052 None:intergenic 40.0%
GAGATTGCTTTACTGTGTTC+CGG - chr3.2:78846632-78846651 MS.gene06526:intron 40.0%
GCATAAATCACATGTGTAGG+AGG + chr3.2:78848696-78848715 None:intergenic 40.0%
GGAATGATTCAGGATATGCT+TGG - chr3.2:78846398-78846417 MS.gene06526:intron 40.0%
GGGTTTGATGTGATTTGAAG+TGG + chr3.2:78846268-78846287 None:intergenic 40.0%
GTTACCAATCTGTTCAGAGA+AGG + chr3.2:78850180-78850199 None:intergenic 40.0%
GTTGTTTATGCATAGGTTCC+GGG - chr3.2:78846837-78846856 MS.gene06526:CDS 40.0%
TACCCAAGATTTAAGCAGGT+TGG - chr3.2:78850084-78850103 MS.gene06526:intron 40.0%
TCACAGGAAACTTTCAGTTC+AGG - chr3.2:78848316-78848335 MS.gene06526:CDS 40.0%
TCACCAACCTGCTTAAATCT+TGG + chr3.2:78850090-78850109 None:intergenic 40.0%
TCAGATGTCCAATCCATAGA+TGG + chr3.2:78846906-78846925 None:intergenic 40.0%
TCGCGGTTGTTTAAAGAAGT+GGG + chr3.2:78846152-78846171 None:intergenic 40.0%
TGAATCATACCTTGTCAGCT+GGG + chr3.2:78848121-78848140 None:intergenic 40.0%
TTACCTGAGAGAGATGTGAT+TGG + chr3.2:78846214-78846233 None:intergenic 40.0%
TTCTTTAAACAACCGCGACT+GGG - chr3.2:78846154-78846173 MS.gene06526:CDS 40.0%
TTGCCAATGTTCTAGTGACA+GGG + chr3.2:78850241-78850260 None:intergenic 40.0%
TTGGCAAATGACCAAGGAAT+TGG - chr3.2:78850254-78850273 MS.gene06526:CDS 40.0%
TTGGCAATCCATCTATGGAT+TGG - chr3.2:78846895-78846914 MS.gene06526:CDS 40.0%
TTGTATGCTAAGAGTAAGGC+AGG + chr3.2:78849707-78849726 None:intergenic 40.0%
TTTGCCAATGTTCTAGTGAC+AGG + chr3.2:78850242-78850261 None:intergenic 40.0%
! ACGAAACCGAACAAGAGTAT+TGG + chr3.2:78846378-78846397 None:intergenic 40.0%
! ATTTTCCTCTGTACCATGCT+AGG - chr3.2:78847953-78847972 MS.gene06526:intron 40.0%
!! CGAAACCGAACAAGAGTATT+GGG + chr3.2:78846377-78846396 None:intergenic 40.0%
!! GTTTTGACGATTCCAACACA+TGG + chr3.2:78847634-78847653 None:intergenic 40.0%
!! TAGTTGTTTTCCGATAGACG+CGG + chr3.2:78848855-78848874 None:intergenic 40.0%
!! TTGGTTTGGATGGACTTGAT+TGG + chr3.2:78847359-78847378 None:intergenic 40.0%
!!! CCAACTGTTAGTTTTGTCTG+AGG - chr3.2:78849443-78849462 MS.gene06526:CDS 40.0%
!!! GGATTGATTTGCTTTTGACC+AGG - chr3.2:78848760-78848779 MS.gene06526:intron 40.0%
!!! TTGATTTGCTTTTGACCAGG+TGG - chr3.2:78848763-78848782 MS.gene06526:intron 40.0%
AACCATTTGCTTGGAAGCTG+TGG - chr3.2:78849518-78849537 MS.gene06526:intron 45.0%
ACATTGCATACCCCTTACAG+TGG - chr3.2:78848907-78848926 MS.gene06526:intron 45.0%
AGACATCTCTCAGCTGTTCT+AGG - chr3.2:78848534-78848553 MS.gene06526:CDS 45.0%
AGAGAAGGTAGGGCAACAAA+AGG + chr3.2:78850165-78850184 None:intergenic 45.0%
AGCAAAGAAACCGCGTCTAT+CGG - chr3.2:78848842-78848861 MS.gene06526:intron 45.0%
AGCAATCTCCGTTCCCAAAT+AGG + chr3.2:78846621-78846640 None:intergenic 45.0%
AGCAGTTGGCAATCCATCTA+TGG - chr3.2:78846890-78846909 MS.gene06526:CDS 45.0%
AGCTGGAACTCTCAATTCTG+TGG - chr3.2:78849142-78849161 MS.gene06526:intron 45.0%
CAAAGAGAAAAGAGGAGGAG+AGG - chr3.2:78846927-78846946 MS.gene06526:CDS 45.0%
CCAATCTGTTCAGAGAAGGT+AGG + chr3.2:78850176-78850195 None:intergenic 45.0%
CCTACCTTCTCTGAACAGAT+TGG - chr3.2:78850173-78850192 MS.gene06526:CDS 45.0%
CGCCTCATGTGTTTAAGCTT+TGG - chr3.2:78850207-78850226 MS.gene06526:CDS 45.0%
CGTGGTACCTGCAATTTAGA+GGG + chr3.2:78848281-78848300 None:intergenic 45.0%
CTCTGCTGATACGCCTATTT+GGG - chr3.2:78846605-78846624 MS.gene06526:intron 45.0%
CTGAGAGAGATGTGATTGGT+CGG + chr3.2:78846210-78846229 None:intergenic 45.0%
CTGAGCAAAGAGAAAAGAGG+AGG - chr3.2:78846922-78846941 MS.gene06526:CDS 45.0%
CTGATACGCCTATTTGGGAA+CGG - chr3.2:78846610-78846629 MS.gene06526:intron 45.0%
CTTACAGCCAAAACCTGACT+TGG - chr3.2:78848485-78848504 MS.gene06526:intron 45.0%
CTTCTTTAAACAACCGCGAC+TGG - chr3.2:78846153-78846172 MS.gene06526:CDS 45.0%
GAACACCCAAAACAGTGCAA+AGG + chr3.2:78850011-78850030 None:intergenic 45.0%
GCATGGTACAGAGGAAAATG+AGG + chr3.2:78847952-78847971 None:intergenic 45.0%
GCTGGAACTCTCAATTCTGT+GGG - chr3.2:78849143-78849162 MS.gene06526:intron 45.0%
GGGTTTCACGTATCTGATAG+TGG + chr3.2:78846357-78846376 None:intergenic 45.0%
GGTGTGTCATATACCTAGCA+TGG + chr3.2:78847969-78847988 None:intergenic 45.0%
GGTTCAAGAGAAGAGAGTGA+AGG + chr3.2:78846247-78846266 None:intergenic 45.0%
GTCGCGGTTGTTTAAAGAAG+TGG + chr3.2:78846153-78846172 None:intergenic 45.0%
TAAAGAAGTGGGATCGGAAC+CGG + chr3.2:78846141-78846160 None:intergenic 45.0%
TACATCTGATCCAGAGCTTC+AGG - chr3.2:78848037-78848056 MS.gene06526:CDS 45.0%
TCAGCTGGGAAATGATGCAA+GGG + chr3.2:78848107-78848126 None:intergenic 45.0%
TCCAAGCAAATGGTTGCAGA+AGG + chr3.2:78849513-78849532 None:intergenic 45.0%
TCGGTTTCGTGGAATGATTC+AGG - chr3.2:78846388-78846407 MS.gene06526:intron 45.0%
TCTCAACATTCCATCCCTGT+CGG - chr3.2:78846579-78846598 MS.gene06526:intron 45.0%
TCTCAAGAATGGAGGGCAAT+GGG + chr3.2:78848727-78848746 None:intergenic 45.0%
TCTCGAGGCACAAAGAAACA+AGG + chr3.2:78847014-78847033 None:intergenic 45.0%
TCTTTAAACAACCGCGACTG+GGG - chr3.2:78846155-78846174 MS.gene06526:CDS 45.0%
TGAGTGGGTACCTCTATCAT+AGG + chr3.2:78848359-78848378 None:intergenic 45.0%
TTCAGCTTCAGTTCAGACTC+TGG + chr3.2:78847990-78848009 None:intergenic 45.0%
TTCCACAGCTTCCAAGCAAA+TGG + chr3.2:78849523-78849542 None:intergenic 45.0%
TTCTCAAGAATGGAGGGCAA+TGG + chr3.2:78848728-78848747 None:intergenic 45.0%
TTGACGATTCCAACACATGG+AGG + chr3.2:78847631-78847650 None:intergenic 45.0%
! AGGGGTATGCAATGTGTGAA+AGG + chr3.2:78848902-78848921 None:intergenic 45.0%
! CCTTTGACCAAGTCAGGTTT+TGG + chr3.2:78848495-78848514 None:intergenic 45.0%
! CTTATAAACCAGGTGCTGTG+AGG + chr3.2:78848233-78848252 None:intergenic 45.0%
! TAACTGACTCATAGGTCCAG+TGG - chr3.2:78847548-78847567 MS.gene06526:CDS 45.0%
! TGCAATGTGTGAAAGGCACA+AGG + chr3.2:78848895-78848914 None:intergenic 45.0%
!! AAGCAGAAGCTTTGGAAGCT+TGG - chr3.2:78849541-78849560 MS.gene06526:intron 45.0%
!! AATAGGGTACTGACGACTTG+AGG + chr3.2:78847417-78847436 None:intergenic 45.0%
!! ATAGGGTACTGACGACTTGA+GGG + chr3.2:78847416-78847435 None:intergenic 45.0%
!! CCAAAACCTGACTTGGTCAA+AGG - chr3.2:78848492-78848511 MS.gene06526:intron 45.0%
!! GAAGCTCTGGATCAGATGTA+AGG + chr3.2:78848037-78848056 None:intergenic 45.0%
!! GATAGAGGTACCCACTCAAA+TGG - chr3.2:78848361-78848380 MS.gene06526:CDS 45.0%
!! TATTGAAGGATGGTTCGGTG+TGG - chr3.2:78846532-78846551 MS.gene06526:intron 45.0%
!! TGACTTGGTCAAAGGCATCA+GGG - chr3.2:78848500-78848519 MS.gene06526:intron 45.0%
!! TTCACGTATCTGATAGTGGC+TGG + chr3.2:78846353-78846372 None:intergenic 45.0%
ACGAGAAATGGACAGCTCAC+CGG + chr3.2:78846654-78846673 None:intergenic 50.0%
ACTGACGACTTGAGGGTCTA+TGG + chr3.2:78847409-78847428 None:intergenic 50.0%
AGCAAATGGTTGCAGAAGGC+CGG + chr3.2:78849509-78849528 None:intergenic 50.0%
AGCTGTGGAAGCAGAAGCTT+TGG - chr3.2:78849533-78849552 MS.gene06526:intron 50.0%
AGGTAGGGCAACAAAAGGTC+AGG + chr3.2:78850160-78850179 None:intergenic 50.0%
ATACTAGAGCCAGCGATCTC+AGG + chr3.2:78847776-78847795 None:intergenic 50.0%
ATAGTGGCTGGTGTGAGAAG+CGG + chr3.2:78846341-78846360 None:intergenic 50.0%
ATCTGATCCAGAGCTTCAGG+AGG - chr3.2:78848040-78848059 MS.gene06526:CDS 50.0%
ATTGGTCGGAGAGAAGGTTG+CGG + chr3.2:78846196-78846215 None:intergenic 50.0%
CCAATGTTCTAGTGACAGGG+TGG + chr3.2:78850238-78850257 None:intergenic 50.0%
CCACCCTGTCACTAGAACAT+TGG - chr3.2:78850235-78850254 MS.gene06526:CDS 50.0%
CGACCAATCACATCTCTCTC+AGG - chr3.2:78846208-78846227 MS.gene06526:intron 50.0%
CTGATGCCTTTGACCAAGTC+AGG + chr3.2:78848501-78848520 None:intergenic 50.0%
CTGTGGGTGTAGAGAATGCA+AGG - chr3.2:78849159-78849178 MS.gene06526:CDS 50.0%
GAACCTTCAGCAGAAGCAGT+TGG - chr3.2:78846876-78846895 MS.gene06526:CDS 50.0%
GCACAAGGTTCTTGACAGCA+TGG + chr3.2:78848880-78848899 None:intergenic 50.0%
GCATCATTTCCCAGCTGACA+AGG - chr3.2:78848109-78848128 MS.gene06526:intron 50.0%
GCCTTCTGCAACCATTTGCT+TGG - chr3.2:78849509-78849528 MS.gene06526:intron 50.0%
GCGTGGTACCTGCAATTTAG+AGG + chr3.2:78848282-78848301 None:intergenic 50.0%
GCTCTGCTGATACGCCTATT+TGG - chr3.2:78846604-78846623 MS.gene06526:intron 50.0%
GGTAGGGCAACAAAAGGTCA+GGG + chr3.2:78850159-78850178 None:intergenic 50.0%
GGTGTCTTGCAACTAGCTGA+AGG - chr3.2:78849086-78849105 MS.gene06526:intron 50.0%
GTCAGCTGGGAAATGATGCA+AGG + chr3.2:78848108-78848127 None:intergenic 50.0%
GTTGAGGGTGATGAGGTTGA+AGG - chr3.2:78847167-78847186 MS.gene06526:CDS 50.0%
GTTGCTGCATCTCCTATCCA+AGG - chr3.2:78848584-78848603 MS.gene06526:CDS 50.0%
TATCAGCAGAGCAACCGACA+GGG + chr3.2:78846596-78846615 None:intergenic 50.0%
TTCTATGTCCTCACAGCACC+TGG - chr3.2:78848222-78848241 MS.gene06526:intron 50.0%
TTGCCAACTGCTTCTGCTGA+AGG + chr3.2:78846882-78846901 None:intergenic 50.0%
! AGGGTAGATGCTCTTGCTGT+GGG - chr3.2:78848791-78848810 MS.gene06526:intron 50.0%
! GATGTGATTGGTCGGAGAGA+AGG + chr3.2:78846202-78846221 None:intergenic 50.0%
! TTCACAGGTTGAGGGTGATG+AGG - chr3.2:78847160-78847179 MS.gene06526:CDS 50.0%
! TTTTGACCAGGTGGAAGCCA+GGG - chr3.2:78848772-78848791 MS.gene06526:intron 50.0%
!! AAGCTTTGGAAGCTTGGAGG+TGG - chr3.2:78849547-78849566 MS.gene06526:intron 50.0%
!! ACTGTTTTGGGTGTTCCAGG+TGG - chr3.2:78850015-78850034 MS.gene06526:intron 50.0%
!! CAGAAGCTTTGGAAGCTTGG+AGG - chr3.2:78849544-78849563 MS.gene06526:intron 50.0%
!! CTGACTTGGTCAAAGGCATC+AGG - chr3.2:78848499-78848518 MS.gene06526:intron 50.0%
!! TGCACTGTTTTGGGTGTTCC+AGG - chr3.2:78850012-78850031 MS.gene06526:CDS 50.0%
AGGTTCCGGGACTGAATTCG+TGG - chr3.2:78846850-78846869 MS.gene06526:CDS 55.0%
ATGGTTGCAGAAGGCCGGAT+AGG + chr3.2:78849504-78849523 None:intergenic 55.0%
CAGGGTAGATGCTCTTGCTG+TGG - chr3.2:78848790-78848809 MS.gene06526:intron 55.0%
GCGGAGTCTCTCCAATTCCT+TGG + chr3.2:78850268-78850287 None:intergenic 55.0%
GGTTCCGGGACTGAATTCGT+GGG - chr3.2:78846851-78846870 MS.gene06526:CDS 55.0%
GTATCAGCAGAGCAACCGAC+AGG + chr3.2:78846597-78846616 None:intergenic 55.0%
TACAGCTCCCTGAGACTGAG+AGG + chr3.2:78847753-78847772 None:intergenic 55.0%
TCGTTGTCCTCCTGAAGCTC+TGG + chr3.2:78848050-78848069 None:intergenic 55.0%
TCTGCCCACGAATTCAGTCC+CGG + chr3.2:78846858-78846877 None:intergenic 55.0%
TGGCGAGGAGATCGTACTGT+GGG + chr3.2:78846073-78846092 None:intergenic 55.0%
TTGGCGAGGAGATCGTACTG+TGG + chr3.2:78846074-78846093 None:intergenic 55.0%
! CTTTTGACCAGGTGGAAGCC+AGG - chr3.2:78848771-78848790 MS.gene06526:intron 55.0%
! GGGTAGATGCTCTTGCTGTG+GGG - chr3.2:78848792-78848811 MS.gene06526:intron 55.0%
!! CACAGCAAGAGCATCTACCC+TGG + chr3.2:78848792-78848811 None:intergenic 55.0%
!! TGAAGGATGGTTCGGTGTGG+AGG - chr3.2:78846535-78846554 MS.gene06526:intron 55.0%
AGAAGTGGGATCGGAACCGG+TGG + chr3.2:78846138-78846157 None:intergenic 60.0%
AGCAGAGCAACCGACAGGGA+TGG + chr3.2:78846592-78846611 None:intergenic 60.0%
ATCGGAACCGGTGGCTATGG+CGG + chr3.2:78846129-78846148 None:intergenic 60.0%
CATCTACCCTGGCTTCCACC+TGG + chr3.2:78848781-78848800 None:intergenic 60.0%
CTCCCTGAGACTGAGAGGCA+GGG + chr3.2:78847748-78847767 None:intergenic 60.0%
GATCTCCTCGCCAACCCACT+CGG - chr3.2:78846080-78846099 MS.gene06526:CDS 60.0%
GGAGCTGTACCTGAGATCGC+TGG - chr3.2:78847764-78847783 MS.gene06526:CDS 60.0%
TCCCCTGCCTCTCAGTCTCA+GGG - chr3.2:78847743-78847762 MS.gene06526:intron 60.0%
TCCCTGAGACTGAGAGGCAG+GGG + chr3.2:78847747-78847766 None:intergenic 60.0%
TGGAGAGACTCCGCAGAGAG+AGG - chr3.2:78850274-78850293 MS.gene06526:CDS 60.0%
TGGATCTGACCGCACCGAGT+GGG + chr3.2:78846097-78846116 None:intergenic 60.0%
TTCCCCTGCCTCTCAGTCTC+AGG - chr3.2:78847742-78847761 MS.gene06526:intron 60.0%
GATCGATGACGCCCCAGTCG+CGG + chr3.2:78846169-78846188 None:intergenic 65.0%
GCTCCCTGAGACTGAGAGGC+AGG + chr3.2:78847749-78847768 None:intergenic 65.0%
GGGATCGGAACCGGTGGCTA+TGG + chr3.2:78846132-78846151 None:intergenic 65.0%
GTGGATCTGACCGCACCGAG+TGG + chr3.2:78846098-78846117 None:intergenic 65.0%
TCTGACCGCACCGAGTGGGT+TGG + chr3.2:78846093-78846112 None:intergenic 65.0%
TTCGACGCCGCCATAGCCAC+CGG - chr3.2:78846119-78846138 MS.gene06526:CDS 65.0%
! CCTCGCCAACCCACTCGGTG+CGG - chr3.2:78846085-78846104 MS.gene06526:CDS 70.0%
! GGCTATGGCGGCGTCGAAGG+TGG + chr3.2:78846117-78846136 None:intergenic 70.0%
! GGTGGCTATGGCGGCGTCGA+AGG + chr3.2:78846120-78846139 None:intergenic 70.0%
!! CCGCACCGAGTGGGTTGGCG+AGG + chr3.2:78846088-78846107 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 78846062 78850305 78846062 ID=MS.gene06526
chr3.2 mRNA 78846062 78850305 78846062 ID=MS.gene06526.t1;Parent=MS.gene06526
chr3.2 exon 78850138 78850305 78850138 ID=MS.gene06526.t1.exon1;Parent=MS.gene06526.t1
chr3.2 CDS 78850138 78850305 78850138 ID=cds.MS.gene06526.t1;Parent=MS.gene06526.t1
chr3.2 exon 78849919 78850032 78849919 ID=MS.gene06526.t1.exon2;Parent=MS.gene06526.t1
chr3.2 CDS 78849919 78850032 78849919 ID=cds.MS.gene06526.t1;Parent=MS.gene06526.t1
chr3.2 exon 78849714 78849827 78849714 ID=MS.gene06526.t1.exon3;Parent=MS.gene06526.t1
chr3.2 CDS 78849714 78849827 78849714 ID=cds.MS.gene06526.t1;Parent=MS.gene06526.t1
chr3.2 exon 78849390 78849515 78849390 ID=MS.gene06526.t1.exon4;Parent=MS.gene06526.t1
chr3.2 CDS 78849390 78849515 78849390 ID=cds.MS.gene06526.t1;Parent=MS.gene06526.t1
chr3.2 exon 78849156 78849200 78849156 ID=MS.gene06526.t1.exon5;Parent=MS.gene06526.t1
chr3.2 CDS 78849156 78849200 78849156 ID=cds.MS.gene06526.t1;Parent=MS.gene06526.t1
chr3.2 exon 78848523 78848642 78848523 ID=MS.gene06526.t1.exon6;Parent=MS.gene06526.t1
chr3.2 CDS 78848523 78848642 78848523 ID=cds.MS.gene06526.t1;Parent=MS.gene06526.t1
chr3.2 exon 78848237 78848392 78848237 ID=MS.gene06526.t1.exon7;Parent=MS.gene06526.t1
chr3.2 CDS 78848237 78848392 78848237 ID=cds.MS.gene06526.t1;Parent=MS.gene06526.t1
chr3.2 exon 78848000 78848074 78848000 ID=MS.gene06526.t1.exon8;Parent=MS.gene06526.t1
chr3.2 CDS 78848000 78848074 78848000 ID=cds.MS.gene06526.t1;Parent=MS.gene06526.t1
chr3.2 exon 78847762 78847875 78847762 ID=MS.gene06526.t1.exon9;Parent=MS.gene06526.t1
chr3.2 CDS 78847762 78847875 78847762 ID=cds.MS.gene06526.t1;Parent=MS.gene06526.t1
chr3.2 exon 78847386 78847585 78847386 ID=MS.gene06526.t1.exon10;Parent=MS.gene06526.t1
chr3.2 CDS 78847386 78847585 78847386 ID=cds.MS.gene06526.t1;Parent=MS.gene06526.t1
chr3.2 exon 78847156 78847291 78847156 ID=MS.gene06526.t1.exon11;Parent=MS.gene06526.t1
chr3.2 CDS 78847156 78847291 78847156 ID=cds.MS.gene06526.t1;Parent=MS.gene06526.t1
chr3.2 exon 78846744 78846971 78846744 ID=MS.gene06526.t1.exon12;Parent=MS.gene06526.t1
chr3.2 CDS 78846744 78846971 78846744 ID=cds.MS.gene06526.t1;Parent=MS.gene06526.t1
chr3.2 exon 78846266 78846333 78846266 ID=MS.gene06526.t1.exon13;Parent=MS.gene06526.t1
chr3.2 CDS 78846266 78846333 78846266 ID=cds.MS.gene06526.t1;Parent=MS.gene06526.t1
chr3.2 exon 78846062 78846176 78846062 ID=MS.gene06526.t1.exon14;Parent=MS.gene06526.t1
chr3.2 CDS 78846062 78846176 78846062 ID=cds.MS.gene06526.t1;Parent=MS.gene06526.t1
Gene Sequence

>MS.gene06526

ATGGTGGGCCCACAGTACGATCTCCTCGCCAACCCACTCGGTGCGGTCAGATCCACCTTCGACGCCGCCATAGCCACCGGTTCCGATCCCACTTCTTTAAACAACCGCGACTGGGGCGTCATCGATCTCTTCCGCAACCTTCTCTCCGACCAATCACATCTCTCTCAGGTAATAACAAACAACCTTCACTCTCTTCTCTTGAACCACTTCAAATCACATCAAACCCTAATTATTAGTTAAACTCTAATCAAAACCCTAATTATGCTTCATTAGGTTCCGCTTCTCACACCAGCCACTATCAGATACGTGAAACCCAATACTCTTGTTCGGTTTCGTGGAATGATTCAGGATATGCTTGGAAATGAATTTTATGTTGGCGCTTTTAAGGTAGTTTTTCTGTTCATCTCTCTATCTTGTTTGAATTTCTTGCTTAATTCAAAAATAGAGTTAATTTTGGTTATGTCAATGTATATTGAAGGATGGTTCGGTGTGGAGGACCAATAAATTTACGGATTTTTCTCAACATTCCATCCCTGTCGGTTGCTCTGCTGATACGCCTATTTGGGAACGGAGATTGCTTTACTGTGTTCCGGTGAGCTGTCCATTTCTCGTCGCTCTAATGTTTTCTTGAGTCGTGTTATGTTTCTTTCATATATTTTAGGGACTACTTAATACATGTATGTACTTTCATTACTAAATTGGAAAGAGATGGATAATTTAGTGGTAAGTTGATGATCTATTTTAAATTGAATAATAGTGTTTCCAAGGTTTAACAGTTGTTTATGCATAGGTTCCGGGACTGAATTCGTGGGCAGAACCTTCAGCAGAAGCAGTTGGCAATCCATCTATGGATTGGACATCTGAGCAAAGAGAAAAGAGGAGGAGAGGAGATGAAGAGTCTTCTTCTAACATGCCTGTAATTTCTTCCTTGCCCTTAATTGAGTTCATTCCTTGTTTCTTTGTGCCTCGAGAGAAATGTGAATAATTTGTACCTTTACCAAGTCATTTTGTTGGATTTCATTATGATTTTGATAACACTATACACTGTGAGTAATGTGTGTTCATTCAGCTTTTTTAATTTTTAATGACATTTATTTATTCACAGGTTGAGGGTGATGAGGTTGAAGGTTCTCCTAATACTAAAAGAATGGTATGAATGGCTTTCACCCAACTCCAATTGTGTTATGAATTTAATTGACTGGAAAGAATCATCCTAGAATAATATATTAGTATCTTTTGTTTAGATTTGTTAGAAATTATGGCTGATATTTTGCTCAAGGTTTATTTTTCAATTCCAATCAAGTCCATCCAAACCAAGATATTTGTTATCCATAATTTTTATGTCCATAGACCCTCAAGTCGTCAGTACCCTATTTAGTTTACCAGTTTTATTTATGAAATCATTAACAGTTTCTTTAGTATTCTATTTAGTTTAGGAGTTCTGGACTTGTTATGAAGTCTTGAACAGCTTATGAGTTGTACTGAATAACTGACTCATAGGTCCAGTGGTATTTTTCCAGTTTATAAGTTAAATGTGCGTAATAGTTGGTTTATTTTTTATTACTACCTCCATGTGTTGGAATCGTCAAAACTACTTGAGTTTGATAATTGGTGCAACCTTCTATTCTGTTCTTTTAAGAATTGGTGTCTCTTACTTTTACAGAGAGAAGGTGAATGCATTTCCCCTGCCTCTCAGTCTCAGGGAGCTGTACCTGAGATCGCTGGCTCTAGTATGAGTTTATTGTCTGGTCTCAATGGCAACTCATCTAGTTGTATTGTAAAGGTAAGATTTAGTCTCATCATTGTTTAGGATCTTATGAAATATATTTCGTTGACATGAGATTAACTTGTTTTTAATTTCATGGAATTATTATATCAAACCCATTTCCTCATTTTCCTCTGTACCATGCTAGGTATATGACACACCAGAGTCTGAACTGAAGCTGAATGACATTTTTGAGTTTGTGGGTATCCTTACATCTGATCCAGAGCTTCAGGAGGACAACGAAGATAGTGATTTATCAAATGGATTTGGTGAAGATCCCTTGCATCATTTCCCAGCTGACAAGGTATGATTCATCCCTTGAGGATACTTGATCAATGAGAATAGTATAAATGAAACTAGCATAAATGAAGCACAAATATGCAGCTGTATATTGTTTCTATGTCCTCACAGCACCTGGTTTATAAGTTTTAACATGTTTATTTGCATTTTACCCTCTAAATTGCAGGTACCACGCCTTCATTGTTTTATTCACAGGAAACTTTCAGTTCAGGACTTCCTTCAGAATAAGCCTATGATAGAGGTACCCACTCAAATGGATTTATTCATCTGAGCAAATTGCTCAAGTTTAGCAATTAGCGTCTTGAATTGGGATAATTCTTAACTTGAAAATACCTTGATAAGATAGCATGTGCTTGTTCTTACAGCCAAAACCTGACTTGGTCAAAGGCATCAGGGAGTCTCTCTTAAGACATCTCTCAGCTGTTCTAGGCAATGATGATGTAGCTGCTCATTTCATGTTGCTGCATCTCCTATCCAAGGTATGCTGTTCTTAATAGATCATTCCTTTCTATCTTTTCAAGCATTGTAAATGATCTCGGTATTGTTTGTCTCACATGTTTCTCTTTCCTCCTACACATGTGATTTATGCATTCTAATCCCATTGCCCTCCATTCTTGAGAATGTTTGTAATAAGGATTGATTTGCTTTTGACCAGGTGGAAGCCAGGGTAGATGCTCTTGCTGTGGGGAAGTTTTCTGTAAATTTTACTTGTTTTAGCAAAGAAACCGCGTCTATCGGAAAACAACTAAACCATGCTGTCAAGAACCTTGTGCCTTTCACACATTGCATACCCCTTACAGTGGAATACTTGAACACTGCTTCTCTTGCACCAAAAAAGAATTATGATACAAATAGGTACGAGATCATATTTGATAATCATTCTGAATATTGACTTCTTAGTTCTTACTAGTACACAAATAAATTACAAGTTTTATTGTCAATGCTCCAGATTAGAAACTGGTGTCTTGCAACTAGCTGAAGGTTCACATTTGATTGTTGATGAGACACAATTAAAAGCTGGAACTCTCAATTCTGTGGGTGTAGAGAATGCAAGGTTGCTGAAAAATGTAATGGAGTTGCAAAAGGTAACTTTCTGCTTGTCTAGCTTTCCTTTCTTTTTGGATGGTTGTGTTCTATTATGCTATATGAATCTTACTTTCTTTTCACTTAGAACAATTTTTTCTTGTTGAAAAACACTATTTTCCATTTTCTATTGATTGTTTACAATTATTTTCAAAGTTAATGACAAACATTTGGTATGTGTTTCAGGTGGAATATGATTTCAAGTACTACAAGATGGAAATGGCAACTGATGTCCAACTGTTAGTTTTGTCTGAGGGGAAATCAAATATCTTACCAGCTGATGTAATTGTACCTATCCGGCCTTCTGCAACCATTTGCTTGGAAGCTGTGGAAGCAGAAGCTTTGGAAGCTTGGAGGTGGTATTTAGCTACTGTTAGACAACTGCCACACTCTTTTGAATCAGAAACTCAGCAGGTATGAGTGATGCTAGTAACAGTTTTCATAAACTAAGGTTGTTTAAGGTTAAATTGAACCAGTTAAAGATTTTTAGGTTACCTGCCTTACTCTTAGCATACAAACTCAGGAACTGACTAATTTCAAAGTTGGGCAGAAGTGGCATTTTAAATTTGATTTTTACATCATCCACTTCAACCTATACATGCATAGCTTAAAACAAGCACGTGATTCACTAGTATTTCCAATATATTCCTGGGAGCTTATAGTTTGCATTACTATTGCAATTTACAAATTCCTCTTTGCTGATTTCTCTAGTTCCATCATTATTATTTGTAAACACCATTTTTCTTAATGAATACATCTCAAGCATACTTAGTCTTTTTGGCGAGAATGCATTATAAGCCTTTGCACTGTTTTGGGTGTTCCAGGTGGTAGAAAGTGATTTAGTTGCCGCAATACAAGCAGATAGGAGTTTGAATACCCAAGATTTAAGCAGGTTGGTGATTGACTATATTACATGTCTTGTAGCATTTTGTTCTCAGCCTTTCTTCCCTGACCTTTTGTTGCCCTACCTTCTCTGAACAGATTGGTAACAATGGGTCGCCTCATGTGTTTAAGCTTTGGTGAGACCACCCTGTCACTAGAACATTGGCAAATGACCAAGGAATTGGAGAGACTCCGCAGAGAGAGGTTAAAGTGA

Protein sequence

>MS.gene06526.t1

MVGPQYDLLANPLGAVRSTFDAAIATGSDPTSLNNRDWGVIDLFRNLLSDQSHLSQVPLLTPATIRYVKPNTLVRFRGMIQDMLGNEFYVGAFKDGSVWRTNKFTDFSQHSIPVGCSADTPIWERRLLYCVPVPGLNSWAEPSAEAVGNPSMDWTSEQREKRRRGDEESSSNMPVEGDEVEGSPNTKRMREGECISPASQSQGAVPEIAGSSMSLLSGLNGNSSSCIVKVYDTPESELKLNDIFEFVGILTSDPELQEDNEDSDLSNGFGEDPLHHFPADKVPRLHCFIHRKLSVQDFLQNKPMIEPKPDLVKGIRESLLRHLSAVLGNDDVAAHFMLLHLLSKVEARVDALAVGKFSVNFTCFSKETASIGKQLNHAVKNLVPFTHCIPLTVEYLNTASLAPKKNYDTNRLETGVLQLAEGSHLIVDETQLKAGTLNSVGVENARLLKNVMELQKVEYDFKYYKMEMATDVQLLVLSEGKSNILPADVIVPIRPSATICLEAVEAEALEAWRWYLATVRQLPHSFESETQQVVESDLVAAIQADRSLNTQDLSRLVTMGRLMCLSFGETTLSLEHWQMTKELERLRRERLK