AlfalfaGEDB | MS.gene051094

M. sativa cultivar XinJiangDaYe / MS.gene051094

KEGG: K02542
GO: GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004386 GO:0005488 GO:0005524 GO:0005575 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006270 GO:0006725 GO:0006807 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0034641 GO:0034645 GO:0035639 GO:0036094 GO:0042555 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0110165 GO:0140097 GO:1901265 GO:1901360 GO:1901363 GO:1901576
PFAM: PF00493.26 PF14551.9 PF17207.6

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051094.t1	XP_013446774.1	98.9	569	6	0	1	569	1	569	0.00E+00	1107.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051094.t1	F4KAB8	81.1	571	106	2	1	569	1	571	9.3e-272	937.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051094.t1	A0A072TUF1	98.9	569	6	0	1	569	1	569	0.0e+00	1107.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049989	MS.gene051094	0.864102	1.55E-64	-1.69E-46
MS.gene050297	MS.gene051094	0.857074	2.09E-62	-1.69E-46
MS.gene050648	MS.gene051094	0.804339	2.26E-49	-1.69E-46
MS.gene051094	MS.gene052367	0.810301	1.23E-50	-1.69E-46
MS.gene051094	MS.gene053416	0.807524	4.85E-50	-1.69E-46
MS.gene051094	MS.gene053417	0.807149	5.82E-50	-1.69E-46
MS.gene051094	MS.gene05369	0.819992	8.68E-53	-1.69E-46
MS.gene051094	MS.gene055957	0.801804	7.57E-49	-1.69E-46
MS.gene051094	MS.gene056041	0.80676	7.04E-50	-1.69E-46
MS.gene051094	MS.gene056526	0.839553	1.48E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051094.t1	MTR_8g090000	98.946	569	6	0	1	569	1	569	0.0	1175
MS.gene051094.t1	MTR_2g437540	83.888	571	90	2	1	569	1	571	0.0	1005
MS.gene051094.t1	MTR_7g109480	39.073	453	228	6	119	568	145	552	1.66e-100	321
MS.gene051094.t1	MTR_4g071090	34.733	524	294	7	88	600	206	692	2.34e-99	321
MS.gene051094.t1	MTR_4g116870	32.582	577	314	11	20	574	39	562	2.16e-87	287
MS.gene051094.t1	MTR_4g122270	33.454	553	314	10	20	568	220	722	9.40e-85	284
MS.gene051094.t1	MTR_4g096700	31.046	583	328	13	20	590	15	535	1.51e-82	275
MS.gene051094.t1	MTR_7g100680	33.772	456	270	10	106	553	129	560	4.11e-81	272
MS.gene051094.t1	MTR_2g009190	33.857	446	235	12	114	550	117	511	7.98e-65	224

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051094.t1	AT5G44635	81.086	571	106	2	1	569	1	571	0.0	992
MS.gene051094.t1	AT5G44635	81.086	571	106	2	1	569	1	571	0.0	992
MS.gene051094.t1	AT4G02060	40.000	455	225	7	119	570	143	552	3.00e-102	326
MS.gene051094.t1	AT4G02060	40.000	455	225	7	119	570	143	552	3.00e-102	326
MS.gene051094.t1	AT2G16440	33.564	578	326	12	16	574	133	671	3.37e-98	318
MS.gene051094.t1	AT1G44900	32.904	544	315	8	16	557	216	711	1.86e-86	289
MS.gene051094.t1	AT1G44900	32.904	544	315	8	16	557	218	713	2.02e-86	289
MS.gene051094.t1	AT2G07690	32.275	567	321	8	20	571	35	553	6.78e-86	283
MS.gene051094.t1	AT5G46280	33.156	564	294	14	10	558	5	500	3.10e-85	277
MS.gene051094.t1	AT5G46280	33.156	564	294	14	10	558	5	500	5.03e-85	278

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Find 142 sgRNAs with CRISPR-Local

Find 448 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAATGAACATGGTGT+TGG	0.455706	8.3:+70053780	None:intergenic
AAACATTTATGTCCCCTCTA+AGG	0.400315	8.3:+70052780	None:intergenic
AAAGTTCCTTGGAGAAGCTC+GGG	0.481710	8.3:+70053493	None:intergenic
AAAGTTTCAGATCTGGACAA+AGG	0.623573	8.3:-70053852	MS.gene051094:CDS
AACCTTGAGAGTATAGCCGG+TGG	0.679023	8.3:+70052368	None:intergenic
AACTCTGTTCAGATTTGTGA+TGG	0.595260	8.3:-70053031	MS.gene051094:CDS
AAGAGAGCAAATTTACTGAT+TGG	0.413990	8.3:-70053351	MS.gene051094:CDS
AATCAGTAAATTTGCTCTCT+TGG	0.374951	8.3:+70053353	None:intergenic
AATGGAACTGAACAGACCGA+TGG	0.644572	8.3:-70049201	MS.gene051094:CDS
AATTGAGACTTTGCACAGCT+AGG	0.566095	8.3:+70052743	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACAACAAGAACTACCTA+CGG	+	chr8.3:70053052-70053071	None:intergenic	30.0%
AAAATCAATGAACATGGTGT+TGG	+	chr8.3:70049315-70049334	None:intergenic	30.0%
AAATATGAGATGATAGAACC+TGG	+	chr8.3:70052889-70052908	None:intergenic	30.0%
AAGAGAAAAGTAACATACCA+TGG	+	chr8.3:70051356-70051375	None:intergenic	30.0%
AAGAGAGCAAATTTACTGAT+TGG	-	chr8.3:70049741-70049760	MS.gene051094:intron	30.0%
ACACATGGTCAATTCTTATT+GGG	+	chr8.3:70053728-70053747	None:intergenic	30.0%
ACTATTAGTATCACAAAAGC+AGG	-	chr8.3:70050598-70050617	MS.gene051094:intron	30.0%
ATAACATTCCAATTGTCAAG+AGG	-	chr8.3:70049498-70049517	MS.gene051094:intron	30.0%
ATATGCAAAATATCCACCAA+CGG	+	chr8.3:70051780-70051799	None:intergenic	30.0%
CAAAAAATAAAAGAGTGGGA+TGG	+	chr8.3:70052071-70052090	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	70049167	70053947	70049167	ID=MS.gene051094
chr8.3	mRNA	70049167	70053947	70049167	ID=MS.gene051094.t1;Parent=MS.gene051094
chr8.3	exon	70052239	70053947	70052239	ID=MS.gene051094.t1.exon1;Parent=MS.gene051094.t1
chr8.3	CDS	70052239	70053947	70052239	ID=cds.MS.gene051094.t1;Parent=MS.gene051094.t1
chr8.3	exon	70049167	70049281	70049167	ID=MS.gene051094.t1.exon2;Parent=MS.gene051094.t1
chr8.3	CDS	70049167	70049281	70049167	ID=cds.MS.gene051094.t1;Parent=MS.gene051094.t1

Gene Sequence

>MS.gene051094

ATGGAAGCATTCGGTGGTTATTTGGTTGATGAGAAAGTCGTTAGGGTTGAAAACGCTTTCTTAGATTTTCTCAAAAGTTTCAGATCTGGACAAAGGAATGAACTTTATTACGAAGCGGAGATTGAAGTCATGAGAGCTAACGAATCCAACACCATGTTCATTGATTTTGAACATGTGATTAGATTCAGTGATGTTCTTCAGAAAGCTATCTCTGATGAATATTTGAGGTTTGAACCTTACTTGCAGAATGCCTGCAAGAGGTTTGTTATGGAGCTTAAGCCGACATTCATTTCTGATGATAATCCTAACAAGGATATCAATGTTGCATTCTATAACATTCCAATTGTCAAGAGGTTAAGGGAATTGGCTACATCAGAGATTGGTAGGCTTGTATCTGTAACAGGAGTGGTAACAAGGACAAGCGAGGTTCGACCCGAGCTTCTCCAAGGAACTTTCAAGTGTCTAGAATGTGGTGGGGTTATAAAGAATGTTGAACAGCAATTCAAGTATACTGAGCCAACAATTTGCCCAAATGCTACATGTAACAACAGAGCAAAGTGGGCACTCCTTCGCCAAGAGAGCAAATTTACTGATTGGCAAAGGGTCAGAATGCAGGAGACGTCCAATGAGATACCTGCTGGCTCTCTGCCTAGGTCATTGGATGTTATTCTTCGTCATGAGATTGTAGAACATGCTAGGGCTGGTGACACTGTGATTTTTACTGGAACTGTAATTGTCATACCTGATATATTGGCGTTGGCATCCCCTGGAGAGAGATCAGAATGTCGTAGGGAAGCTTCTCAACGCAAGGGTGCTTCATCTGGAAATGAAGGTGTGAGGGGCCTTAGGGCTTTGGGAGTCAGAGACCTCTCCTACCGGCTTGATTTTATTGCCAACTCTGTTCAGATTTGTGATGGTAGAAGAGAAATAGACATCAGGAATAGAAAGAAGGATTCAGATGAAGATGATCTGCAATTCACTGCTCAGGAACTGGATGAAGTTCAACGAATGAGGAACACTCCAGATTTCTTCACCAAGCTTGTTGAAAGTGTAGCTCCAACTATTTTTGGTCATCAAGATATTAAGCGAGCAATCCTTCTTATGCTTATGAGTGGGGTTCACAAATCTACTCATGAAGGCATCAGCCTTAGAGGGGACATAAATGTTTGTATTGTTGGAGATCCTAGCTGTGCAAAGTCTCAATTTCTTAAGTATACTTCAAGCATTGTTCCAAGATCTGTGTATACATCTGGAAAGTCATCATCTGTTGCTGGGTTGACTGCAACTGTTGCCAAGGAACCAGAAACTGGAGAGTTTTGTATTGAGGCCGGCGCTTTGATGCTTGCTGACAATGGCATTTGCTGCATAGATGAATTTGACAAGATGGACATAAGAGATCAGGTTGCAATTCATGAGGCTATGGAACAACAAACTATTAGTATCACAAAAGCAGGAATACAAGCAACACTCAATGCTCGTACTTCCATTCTTGCCGCTGCCAACCCTGCTGGAGGACGGTATGATAAGTCTAAACCACTGAAGTACAGTGTGGCTCTTCCACCGGCTATACTCTCAAGGTTTGATCTTGTATACATTATGATTGATGACCCATACGATGTTACAGATTACCACATAGCTTCTCATATTGTGCGAGTTCATCAAAAGCGCGAAGAAGCTCTTGCTCCAACGTTCACTACAGCAGAACTGAAGTGTTATATAGCCTATGCAAAAAGTCTTGCGGAAGAGGTTCTTAGTAGAGCTTTATCTTTAGCTCGGAGCGCGGGGAAGATTGTGCCTATGTCTTATTGTCGTGGGGTTTGTCTGCCCACTCATATTCTCTATGCGGATGATGTGATGATTTTTTGCACAGGCCTAAAAAGTAATATTCGTTATTTGCTTGCTATTTTCAAAAATTATGCTGATGTTTCAGGTCAGATTATAAACAACAGTAAAAGCCGCTTTTATACTGGTGCTATGTCTGTGGTCCGGGAGCAGATGCTGGGGGATTTGTTGGGCTTTGGTGCTGGTTCAATTCCTTTCAATTATTTGGGTTGTCCGGTGTTCAAAGGGAAGCCAAAGTCTATTTATTTTCTGGCAATTTCAGATAAAATCAAGATGAAGCTTGCTTCTTGGAAAGGTTCTTTGCTCTCTATCATGGGTCGTGTTCAGTTAGTCAAGTCCATCATCCATGGTATGTTACTTTTCTCTTTTCATGTCTATATGTGGCCTAGACGTCTGTTGAGTGATTTAGATAAGTGGATAAAGAATTTCATTTGGAGTGGGGATGTTAACACAAGGAAATTATGCACGGTATCTTGGAAAGTGTTGTGTCGCTCTTGGGAGGCAGGGGGGCTGGACCTCAAGCCTACCCGTCTTGCTAACGAGGCCTTAATGTTACAGTTAGCTTGGAAATTGGTTTCTGAGGACTCTCAATGGTCTGTTTTATTGAAATCCCGTTATTTTTCTAAGGGACAACCCATTCGGCATTATTTTAAATCTTCCATTTGGGGTGGGGTCAAGCCTCACATTGACACTGTTATTGCTAATTCGCTTTGGGTGGTTGGAACTGGTGATAAAATTCAATTATGGACCGATAATTGGCTTGGTGAACCGTTGGTGGATATTTTGCATATTGATCCGGAGGTTTCTATTAATTTCTCTGGTTTGTTGTCTGATGTTATTATAAATGGTGACTGGAATGTGCCTGCTGAGGTATGTTCACTGCCTGGTATTGCATCTCGGCTGTCCTCTATTGTGCTGCCTATTGTGCCTCTCCCGGACTTGCTCACTTGGCCGTTTGCTGAAGATGGGAAGTTAACTGCGAAGATGTCCTTTGCTTTTCTCACGACGCAAGCTCCTGGTGTTCCATGGGCAAAGCTTATTTGGAATTCTTGTATTCCTCCATCCCACTCTTTTATTTTTTGGAGGCTTGCTCATGATAGAATGCCCACTGATGAAAATCTTTCTTCCCGTGGGTGCGCCATGGTCTCTATGTGTAACCTTTGTTTGGAACATGTGGAAACTAGTGATCATTTGTTTCTTCGGTGTAAATTCGCGGTGGCTCTTTGGCATTGGCTTGGTTTACGGTTGGGTATTGGTTTCGATTGCTCTTCCGTTCAGACGCTGTTGTCTTCTATACCTCGTCATTGTTCTTCTCAGGTTAGTGACATGTATGTTGCAGCGGTTGTGCATTTAGTTCATTCTATTTGGTGGGCAAGAAACAATGTGCGGTTTTCCTCGGCGGTGGTGTCTTTGCATTCGATGCAGGTCAAGGTGCATGCCTTAATTGGTTTGAGTGGGGCTGTTTCCACTGGGAAGTGTACAGCTGCTGATGCGGCTCTCCTTGATCTTTTCCGGATTCCTCCTCATCGTCGGACTTGCAGAGAGGTAGTAGAGGTGTGTTGGAGGCCGCCAACGGCGCCTTGGTTAAAGGTCAACACGGACGGGTCCAGCATTAACAATATGGGTGCTTGCGGTGGTCTATTTCGTAATCATTTGGGGACTTTCTTGGGAGCCTTCGGTGCCAATTTAGGAAGGTGCTCGGTTCTTGAAACAGAGGTGACTGCTTACATTCTTGCTATGGAGTATGCTTCCCATCATGGTTGGTCTCACATATGGTTGGAAAGTGATTCTTCCACTGCGCTTCTTGTGTTCAATAATTCATCGTTGGTGCCCATTATCCTTAGGAATCGGTGGCACAATGCTCGAGCTCTTAATGTCCAGGTTCTATCATCTCATATTTACAGGGAAGGCAATATATGTGCGGACAAGTTAGCACACTATGGGCGCTCAGTGGTTGGAGAAGTGTGGTTGTCAGCGTTACCGTCAGAGTTTCACCAGGATTTTTATACGGACCGCTGTGGTTTGCCTCGGTTTAGATATCCGTAGGTAGTTCTTGTTGTTTTTTTCTTTTTTGCTGTATATATTTTTTCTGAGGGTCTTGGCCTAGTCCCCCCTCTTGTATCTTTTCCCCCTTTTTTTTTTTAATAAAATTTGAGTTTGGCGGTGCGGGATAGGAGTTCATCGGGGTGCCAACCTAGTTGGAATGTCGTTGCTTCTCCTTGATGCTTGTCCTTTCTCCTGCTTTACCTAAAAAAATTACCTAACTTAAGTGATCTAACAATAGGCATCAAACAATGCTATATATGTAAACAAATTATGAATAGTTATGCATGCCATAAAATTACTGAATCACGAAATTATTACTCCACTGATGTATTGCACAAGAAACACAAGAATGTGAAATTTATCACTAGCATTTGTTTTTTTTTTTTGAATGGCCAACTTTATTAAGCACCCAACCTCATAAGAAAGAAGAAGGTGCGAAGGAAACCAAAATAGACAAAAACAACACAAAAAATATGATAATGGAAAGAGAAACAGAAAAAAAAATATACAGGTTCAATTATGAATGAATCAAAAAGATAATAGAATTGCTAACCTTCACAACTTAGATGATCTGCAGCAAAAAAATAAAAGAGGGAACTCACTTGTTTAGAGAATAGAGAGAAGAAGAGAAATGCTAGGGTCACACCTACTAACACTCTCTTTTAACACACCCAATAAGAATTGACCATGTGTCTCATTTTTTAATTTCAATTAACATGAATCCTGTTCAACCTCTTTCTAAACATTTTGATTTTTTTTTAATAATTTAATTTAACAGTTGGAGAGAGAAAAGAGAAGAAGATCTCAAGTTTGATGAACAATTGAGCATGATGTTTAATGGAACTGAACAGACCGATGGAAAAGGGGAAGAGATGGTGCTTATTGTCGTCTAA

Protein sequence

>MS.gene051094.t1

MEAFGGYLVDEKVVRVENAFLDFLKSFRSGQRNELYYEAEIEVMRANESNTMFIDFEHVIRFSDVLQKAISDEYLRFEPYLQNACKRFVMELKPTFISDDNPNKDINVAFYNIPIVKRLRELATSEIGRLVSVTGVVTRTSEVRPELLQGTFKCLECGGVIKNVEQQFKYTEPTICPNATCNNRAKWALLRQESKFTDWQRVRMQETSNEIPAGSLPRSLDVILRHEIVEHARAGDTVIFTGTVIVIPDILALASPGERSECRREASQRKGASSGNEGVRGLRALGVRDLSYRLDFIANSVQICDGRREIDIRNRKKDSDEDDLQFTAQELDEVQRMRNTPDFFTKLVESVAPTIFGHQDIKRAILLMLMSGVHKSTHEGISLRGDINVCIVGDPSCAKSQFLKYTSSIVPRSVYTSGKSSSVAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYSVALPPAILSRFDLVYIMIDDPYDVTDYHIASHIVRVHQKREEALAPTFTTAELNWREKREEDLKFDEQLSMMFNGTEQTDGKGEEMVLIVV