Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06671.t1 | XP_003602285.1 | 100 | 106 | 0 | 0 | 1 | 106 | 1 | 106 | 2.40E-57 | 231.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06671.t1 | Q9T096 | 82.1 | 106 | 19 | 0 | 1 | 106 | 1 | 106 | 5.1e-48 | 191.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06671.t1 | G7J7H5 | 100.0 | 106 | 0 | 0 | 1 | 106 | 1 | 106 | 1.7e-57 | 231.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057133 | MS.gene06671 | 0.963887 | 1.23E-122 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06671 | MS.gene69238 | PPI |
| MS.gene060686 | MS.gene06671 | PPI |
| MS.gene06671 | MS.gene057330 | PPI |
| MS.gene06671 | MS.gene71872 | PPI |
| MS.gene059765 | MS.gene06671 | PPI |
| MS.gene06671 | MS.gene58367 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06671.t1 | MTR_3g091840 | 100.000 | 106 | 0 | 0 | 1 | 106 | 1 | 106 | 2.42e-78 | 225 |
| MS.gene06671.t1 | MTR_8g027255 | 67.619 | 105 | 34 | 0 | 1 | 105 | 1 | 105 | 1.81e-50 | 155 |
| MS.gene06671.t1 | MTR_1g077750 | 67.000 | 100 | 29 | 1 | 1 | 100 | 1 | 96 | 5.63e-46 | 144 |
| MS.gene06671.t1 | MTR_2g078670 | 55.789 | 95 | 42 | 0 | 8 | 102 | 12 | 106 | 7.19e-35 | 116 |
| MS.gene06671.t1 | MTR_3g070330 | 52.174 | 92 | 44 | 0 | 8 | 99 | 35 | 126 | 1.33e-33 | 113 |
| MS.gene06671.t1 | MTR_5g082490 | 52.128 | 94 | 45 | 0 | 8 | 101 | 12 | 105 | 2.20e-33 | 112 |
| MS.gene06671.t1 | MTR_3g070330 | 51.064 | 94 | 46 | 0 | 8 | 101 | 35 | 128 | 3.37e-33 | 113 |
| MS.gene06671.t1 | MTR_7g068250 | 53.191 | 94 | 44 | 0 | 9 | 102 | 13 | 106 | 1.80e-32 | 110 |
| MS.gene06671.t1 | MTR_8g058785 | 47.423 | 97 | 51 | 0 | 8 | 104 | 12 | 108 | 4.85e-31 | 107 |
| MS.gene06671.t1 | MTR_8g061270 | 47.423 | 97 | 51 | 0 | 8 | 104 | 12 | 108 | 4.85e-31 | 107 |
| MS.gene06671.t1 | MTR_4g088505 | 46.316 | 95 | 51 | 0 | 8 | 102 | 12 | 106 | 1.44e-27 | 97.8 |
| MS.gene06671.t1 | MTR_1g077760 | 67.857 | 56 | 18 | 0 | 44 | 99 | 1 | 56 | 7.54e-22 | 83.6 |
| MS.gene06671.t1 | MTR_4g088505 | 43.056 | 72 | 41 | 0 | 8 | 79 | 12 | 83 | 1.11e-17 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06671.t1 | AT4G27745 | 82.075 | 106 | 19 | 0 | 1 | 106 | 1 | 106 | 1.53e-63 | 188 |
| MS.gene06671.t1 | AT4G27745 | 82.075 | 106 | 19 | 0 | 1 | 106 | 1 | 106 | 1.53e-63 | 188 |
| MS.gene06671.t1 | AT4G27745 | 82.075 | 106 | 19 | 0 | 1 | 106 | 1 | 106 | 1.53e-63 | 188 |
| MS.gene06671.t1 | AT4G27745 | 82.075 | 106 | 19 | 0 | 1 | 106 | 1 | 106 | 1.53e-63 | 188 |
| MS.gene06671.t1 | AT5G53940 | 51.546 | 97 | 47 | 0 | 8 | 104 | 12 | 108 | 4.52e-34 | 114 |
| MS.gene06671.t1 | AT3G11230 | 52.128 | 94 | 45 | 0 | 8 | 101 | 12 | 105 | 4.57e-34 | 114 |
| MS.gene06671.t1 | AT4G27740 | 54.839 | 93 | 42 | 0 | 10 | 102 | 10 | 102 | 5.10e-34 | 113 |
| MS.gene06671.t1 | AT3G11230 | 52.128 | 94 | 45 | 0 | 8 | 101 | 45 | 138 | 7.74e-34 | 115 |
| MS.gene06671.t1 | AT3G11230 | 53.933 | 89 | 41 | 0 | 10 | 98 | 14 | 102 | 1.27e-33 | 112 |
| MS.gene06671.t1 | AT3G11230 | 53.933 | 89 | 41 | 0 | 10 | 98 | 47 | 135 | 1.74e-33 | 113 |
| MS.gene06671.t1 | AT3G08990 | 53.191 | 94 | 44 | 0 | 9 | 102 | 13 | 106 | 4.92e-33 | 112 |
| MS.gene06671.t1 | AT3G08990 | 53.191 | 94 | 44 | 0 | 9 | 102 | 13 | 106 | 4.92e-33 | 112 |
| MS.gene06671.t1 | AT3G08990 | 53.191 | 94 | 44 | 0 | 9 | 102 | 13 | 106 | 4.92e-33 | 112 |
| MS.gene06671.t1 | AT3G55890 | 54.255 | 94 | 43 | 0 | 8 | 101 | 12 | 105 | 1.03e-32 | 110 |
| MS.gene06671.t1 | AT3G55890 | 54.255 | 94 | 43 | 0 | 8 | 101 | 12 | 105 | 1.03e-32 | 110 |
| MS.gene06671.t1 | AT3G55890 | 55.056 | 89 | 40 | 0 | 9 | 97 | 13 | 101 | 2.08e-32 | 109 |
| MS.gene06671.t1 | AT3G55890 | 55.056 | 89 | 40 | 0 | 9 | 97 | 13 | 101 | 2.08e-32 | 109 |
| MS.gene06671.t1 | AT2G40110 | 48.936 | 94 | 48 | 0 | 8 | 101 | 12 | 105 | 2.90e-31 | 107 |
| MS.gene06671.t1 | AT2G40110 | 48.352 | 91 | 47 | 0 | 8 | 98 | 12 | 102 | 8.23e-31 | 105 |
| MS.gene06671.t1 | AT2G40110 | 44.444 | 72 | 40 | 0 | 8 | 79 | 12 | 83 | 1.62e-21 | 81.6 |
| MS.gene06671.t1 | AT2G40110 | 44.444 | 72 | 40 | 0 | 8 | 79 | 12 | 83 | 1.62e-21 | 81.6 |
Find 23 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAGATGCCTGTCTTCTTT+TGG | 0.254022 | 3.3:+76672530 | None:intergenic |
| TGGTGATTGTCGTGAAGTGC+TGG | 0.372228 | 3.3:-76672474 | MS.gene06671:CDS |
| TTGGGTTACCTGAAAAGCCT+TGG | 0.462037 | 3.3:+76674431 | None:intergenic |
| GAAGTACGAAAGAGCGTATG+AGG | 0.502168 | 3.3:-76672447 | MS.gene06671:CDS |
| TCATGATGATATTATTTCCA+AGG | 0.502878 | 3.3:-76674448 | MS.gene06671:CDS |
| GAAGACAGGCATCTCTTGAC+TGG | 0.509264 | 3.3:-76672524 | MS.gene06671:CDS |
| CAGTGACAACATTCATTGCA+TGG | 0.547511 | 3.3:+76672555 | None:intergenic |
| CATGCAATGAATGTTGTCAC+TGG | 0.550116 | 3.3:-76672554 | MS.gene06671:CDS |
| ATTGTCGTGAAGTGCTGGGT+TGG | 0.550480 | 3.3:-76672469 | MS.gene06671:CDS |
| CATTGCATGGGAAAACAGAA+AGG | 0.570564 | 3.3:+76672568 | None:intergenic |
| TCACTGGGCCAAAAGAAGAC+AGG | 0.572382 | 3.3:-76672538 | MS.gene06671:CDS |
| GGTGATTGTCGTGAAGTGCT+GGG | 0.578151 | 3.3:-76672473 | MS.gene06671:CDS |
| CATGGGAAAACAGAAAGGCT+CGG | 0.593139 | 3.3:+76672573 | None:intergenic |
| AGTGACAACATTCATTGCAT+GGG | 0.597466 | 3.3:+76672556 | None:intergenic |
| TGAGGCGTCCCAGAAGTACA+AGG | 0.604854 | 3.3:-76672429 | MS.gene06671:CDS |
| GCGTCCCAGAAGTACAAGGA+AGG | 0.640509 | 3.3:-76672425 | MS.gene06671:CDS |
| ATGCAATGAATGTTGTCACT+GGG | 0.665460 | 3.3:-76672553 | MS.gene06671:CDS |
| AAACATCGGCAACAGTGTGG+AGG | 0.669170 | 3.3:+76672501 | None:intergenic |
| TATCATCATGAAGTGAAACA+TGG | 0.670134 | 3.3:+76674460 | None:intergenic |
| TTACAGCAGCAGTACAAGCG+AGG | 0.670520 | 3.3:+76674492 | None:intergenic |
| ACAATCACCACAGTAAACAT+CGG | 0.673082 | 3.3:+76672487 | None:intergenic |
| AGTAAACATCGGCAACAGTG+TGG | 0.687539 | 3.3:+76672498 | None:intergenic |
| ACTGTTGCCGATGTTTACTG+TGG | 0.707487 | 3.3:-76672494 | MS.gene06671:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAATGGAAATAAT+TGG | + | chr3.3:76672480-76672499 | None:intergenic | 10.0% |
| !! | AAAAAAAAATGGAAATAATT+GGG | + | chr3.3:76672479-76672498 | None:intergenic | 10.0% |
| !! | GTAATATTATGAAATAAGTT+TGG | + | chr3.3:76673359-76673378 | None:intergenic | 15.0% |
| !! | TCCTTAACAAAAAAAAAAAA+TGG | + | chr3.3:76672490-76672509 | None:intergenic | 15.0% |
| !!! | ATTACTTTTACTAATAAAAC+AGG | + | chr3.3:76673980-76673999 | None:intergenic | 15.0% |
| !!! | GTAATTTTTAAAATCAAACT+TGG | + | chr3.3:76672599-76672618 | None:intergenic | 15.0% |
| !!! | GTTTGTAAATAGAATTTTTA+AGG | - | chr3.3:76672783-76672802 | MS.gene06671:intron | 15.0% |
| !!! | TCCATTTTTTTTTTTTGTTA+AGG | - | chr3.3:76672486-76672505 | MS.gene06671:CDS | 15.0% |
| !!! | TTTGTTTCTTAAATAGAAAA+TGG | - | chr3.3:76674062-76674081 | MS.gene06671:intron | 15.0% |
| !! | AACAAAAAAAGAAATGCTAA+AGG | + | chr3.3:76674039-76674058 | None:intergenic | 20.0% |
| !! | ATACTATAGTTTATATAGAG+AGG | + | chr3.3:76673708-76673727 | None:intergenic | 20.0% |
| !! | TACTATAGTTTATATAGAGA+GGG | + | chr3.3:76673707-76673726 | None:intergenic | 20.0% |
| !! | TGAAAAGTCAAAAATTGTTA+TGG | - | chr3.3:76674499-76674518 | MS.gene06671:CDS | 20.0% |
| !!! | TTTCATTAATTTTGTAACCA+GGG | - | chr3.3:76674284-76674303 | MS.gene06671:intron | 20.0% |
| !!! | TTTTCATTAATTTTGTAACC+AGG | - | chr3.3:76674283-76674302 | MS.gene06671:intron | 20.0% |
| ! | ACAATATCAGTAAATGATCA+AGG | + | chr3.3:76674264-76674283 | None:intergenic | 25.0% |
| ! | AGTGACACAATTAAACATAT+GGG | - | chr3.3:76673057-76673076 | MS.gene06671:intron | 25.0% |
| ! | ATATGAATAGGAGAATCAAA+AGG | - | chr3.3:76673187-76673206 | MS.gene06671:intron | 25.0% |
| ! | ATCATGCATATCTTGTATTT+AGG | - | chr3.3:76672741-76672760 | MS.gene06671:intron | 25.0% |
| ! | ATTAATTTCTCTTGCACTAT+AGG | - | chr3.3:76672572-76672591 | MS.gene06671:CDS | 25.0% |
| ! | CATCAAAAGAAGAATTTAGT+TGG | + | chr3.3:76674187-76674206 | None:intergenic | 25.0% |
| ! | CTCTTTAGTAAATAAAGCAA+TGG | - | chr3.3:76673904-76673923 | MS.gene06671:intron | 25.0% |
| ! | TATGAATAGGAGAATCAAAA+GGG | - | chr3.3:76673188-76673207 | MS.gene06671:intron | 25.0% |
| ! | TCATGATGATATTATTTCCA+AGG | - | chr3.3:76672441-76672460 | MS.gene06671:CDS | 25.0% |
| ! | TCATGCATATCTTGTATTTA+GGG | - | chr3.3:76672742-76672761 | MS.gene06671:intron | 25.0% |
| ! | TTATAAAAGGGGGAAATATT+GGG | - | chr3.3:76673932-76673951 | MS.gene06671:intron | 25.0% |
| ! | TTATGAACCTAGAAATTGTA+CGG | + | chr3.3:76674012-76674031 | None:intergenic | 25.0% |
| ! | TTCAATTGCAATTTCAAATG+AGG | + | chr3.3:76673805-76673824 | None:intergenic | 25.0% |
| !! | TCATTTGAAATTGCAATTGA+AGG | - | chr3.3:76673804-76673823 | MS.gene06671:intron | 25.0% |
| !!! | AGAGTTAATTTGTTAGGATA+TGG | - | chr3.3:76673124-76673143 | MS.gene06671:intron | 25.0% |
| !!! | GAGTTAATTTGTTAGGATAT+GGG | - | chr3.3:76673125-76673144 | MS.gene06671:intron | 25.0% |
| !!! | TTTTTTTTGTGTTAACCCTT+CGG | + | chr3.3:76673652-76673671 | None:intergenic | 25.0% |
| AACAGACTGCATATTCAATT+AGG | + | chr3.3:76673768-76673787 | None:intergenic | 30.0% | |
| AATCAGCAATGACATACAAT+AGG | + | chr3.3:76672555-76672574 | None:intergenic | 30.0% | |
| ACAGACTGCATATTCAATTA+GGG | + | chr3.3:76673767-76673786 | None:intergenic | 30.0% | |
| AGTTATCACAGTAGCAATTT+AGG | - | chr3.3:76672861-76672880 | MS.gene06671:intron | 30.0% | |
| ATAGGCATAAACATTCCAAA+TGG | - | chr3.3:76674148-76674167 | MS.gene06671:intron | 30.0% | |
| ATCGATACTGAATGTTTGAT+AGG | - | chr3.3:76674130-76674149 | MS.gene06671:intron | 30.0% | |
| ATTAACTCTACATCCTAACA+AGG | + | chr3.3:76673113-76673132 | None:intergenic | 30.0% | |
| CAAAAATTGTTATGGAGAAC+TGG | - | chr3.3:76674507-76674526 | MS.gene06671:CDS | 30.0% | |
| CAGTGACACAATTAAACATA+TGG | - | chr3.3:76673056-76673075 | MS.gene06671:intron | 30.0% | |
| CATATCTTGTATTTAGGGAT+TGG | - | chr3.3:76672747-76672766 | MS.gene06671:intron | 30.0% | |
| CCAGATTATCATATATCAGA+TGG | - | chr3.3:76672675-76672694 | MS.gene06671:intron | 30.0% | |
| CCATCTGATATATGATAATC+TGG | + | chr3.3:76672678-76672697 | None:intergenic | 30.0% | |
| GGTACTTGGTTTAATTACAA+TGG | + | chr3.3:76673431-76673450 | None:intergenic | 30.0% | |
| GTTATAAAAGGGGGAAATAT+TGG | - | chr3.3:76673931-76673950 | MS.gene06671:intron | 30.0% | |
| TACAACAAGTTTCACATACA+CGG | + | chr3.3:76673452-76673471 | None:intergenic | 30.0% | |
| TATCATCATGAAGTGAAACA+TGG | + | chr3.3:76672432-76672451 | None:intergenic | 30.0% | |
| TGGATAAAATGGCAATTTGA+AGG | + | chr3.3:76673331-76673350 | None:intergenic | 30.0% | |
| TGTGAGTATCTCATATGAAT+AGG | - | chr3.3:76673175-76673194 | MS.gene06671:intron | 30.0% | |
| TTGTATTCCGTACAATTTCT+AGG | - | chr3.3:76674002-76674021 | MS.gene06671:intron | 30.0% | |
| ! | AGAATCTGAATTTGACTTCT+GGG | - | chr3.3:76673551-76673570 | MS.gene06671:intron | 30.0% |
| ! | ATGAAATAAGTTTGGCGTTT+TGG | + | chr3.3:76673351-76673370 | None:intergenic | 30.0% |
| ! | TATTATTTCCAAGGCTTTTC+AGG | - | chr3.3:76672450-76672469 | MS.gene06671:CDS | 30.0% |
| ! | TTAAGATTTTCGACCTTGTT+AGG | - | chr3.3:76673097-76673116 | MS.gene06671:intron | 30.0% |
| !! | AAACTTGTTGTAGCAACAAA+AGG | - | chr3.3:76673460-76673479 | MS.gene06671:intron | 30.0% |
| !! | GGATGTAGAGTTAATTTGTT+AGG | - | chr3.3:76673118-76673137 | MS.gene06671:intron | 30.0% |
| !! | TGTATCTGTAAAGTTGCTTT+TGG | - | chr3.3:76673000-76673019 | MS.gene06671:intron | 30.0% |
| !!! | AGTTGCTTTTGGTTGAAAAA+CGG | - | chr3.3:76673011-76673030 | MS.gene06671:intron | 30.0% |
| AACTGACATGTGTACTTGTA+CGG | + | chr3.3:76672845-76672864 | None:intergenic | 35.0% | |
| AATGAATGCACAGATTGTAC+AGG | - | chr3.3:76672819-76672838 | MS.gene06671:intron | 35.0% | |
| AATGGCATGAGTTAATACGA+GGG | + | chr3.3:76673413-76673432 | None:intergenic | 35.0% | |
| ACAATCACCACAGTAAACAT+CGG | + | chr3.3:76674405-76674424 | None:intergenic | 35.0% | |
| ACATATGGGATATGTTGAGA+AGG | - | chr3.3:76673071-76673090 | MS.gene06671:intron | 35.0% | |
| AGTGACAACATTCATTGCAT+GGG | + | chr3.3:76674336-76674355 | None:intergenic | 35.0% | |
| ATGCAATGAATGTTGTCACT+GGG | - | chr3.3:76674336-76674355 | MS.gene06671:intron | 35.0% | |
| CAATTAGGGGTTAAACATGA+GGG | + | chr3.3:76673753-76673772 | None:intergenic | 35.0% | |
| CAGACTGCATATTCAATTAG+GGG | + | chr3.3:76673766-76673785 | None:intergenic | 35.0% | |
| CAGCCAAATATCACAAAGAT+TGG | - | chr3.3:76674097-76674116 | MS.gene06671:intron | 35.0% | |
| CATCGTCTACAATGAATTTC+AGG | - | chr3.3:76672511-76672530 | MS.gene06671:CDS | 35.0% | |
| CTCGCAATTGATTAGAAGTT+AGG | + | chr3.3:76672651-76672670 | None:intergenic | 35.0% | |
| CTGCCAATCTTTGTGATATT+TGG | + | chr3.3:76674103-76674122 | None:intergenic | 35.0% | |
| GACAGGTTTACAATAGTAGT+TGG | + | chr3.3:76673685-76673704 | None:intergenic | 35.0% | |
| GCAATTTGAAGGAAATCTGA+CGG | + | chr3.3:76673320-76673339 | None:intergenic | 35.0% | |
| GGAGAAAACAACTATCCATT+TGG | + | chr3.3:76674166-76674185 | None:intergenic | 35.0% | |
| TAGTTTATATAGAGAGGGAC+AGG | + | chr3.3:76673702-76673721 | None:intergenic | 35.0% | |
| TATCAGATGGTTTCTGTTTG+TGG | - | chr3.3:76672688-76672707 | MS.gene06671:intron | 35.0% | |
| TCAATTAGGGGTTAAACATG+AGG | + | chr3.3:76673754-76673773 | None:intergenic | 35.0% | |
| ! | AAACGGCATTTTAAATGTGC+TGG | - | chr3.3:76673028-76673047 | MS.gene06671:intron | 35.0% |
| ! | AACGGCATTTTAAATGTGCT+GGG | - | chr3.3:76673029-76673048 | MS.gene06671:intron | 35.0% |
| ! | AATGGCTCTGTTATAAAAGG+GGG | - | chr3.3:76673922-76673941 | MS.gene06671:intron | 35.0% |
| ! | AGCAATGGCTCTGTTATAAA+AGG | - | chr3.3:76673919-76673938 | MS.gene06671:intron | 35.0% |
| ! | ATTTTCCTTCCTTGTACTTC+TGG | + | chr3.3:76674472-76674491 | None:intergenic | 35.0% |
| ! | CAATGGCTCTGTTATAAAAG+GGG | - | chr3.3:76673921-76673940 | MS.gene06671:intron | 35.0% |
| ! | GAGAATCTGAATTTGACTTC+TGG | - | chr3.3:76673550-76673569 | MS.gene06671:intron | 35.0% |
| ! | GCAATGGCTCTGTTATAAAA+GGG | - | chr3.3:76673920-76673939 | MS.gene06671:intron | 35.0% |
| ! | TGTTAGGATATGGGTTATGA+AGG | - | chr3.3:76673134-76673153 | MS.gene06671:intron | 35.0% |
| ! | TTTTCCTTCCTTGTACTTCT+GGG | + | chr3.3:76674471-76674490 | None:intergenic | 35.0% |
| ! | TTTTGTAACCAGGGAAGAAA+TGG | - | chr3.3:76674293-76674312 | MS.gene06671:intron | 35.0% |
| !! | GTTTGGCGTTTTGGATAAAA+TGG | + | chr3.3:76673342-76673361 | None:intergenic | 35.0% |
| AACAAATGACCGAGCTTAGT+TGG | - | chr3.3:76673495-76673514 | MS.gene06671:intron | 40.0% | |
| AGGGATGAGTTACAACACAA+GGG | + | chr3.3:76673394-76673413 | None:intergenic | 40.0% | |
| AGTTTCACATACACGGTACT+TGG | + | chr3.3:76673445-76673464 | None:intergenic | 40.0% | |
| CAATGGCATGAGTTAATACG+AGG | + | chr3.3:76673414-76673433 | None:intergenic | 40.0% | |
| CAGTGACAACATTCATTGCA+TGG | + | chr3.3:76674337-76674356 | None:intergenic | 40.0% | |
| CATGCAATGAATGTTGTCAC+TGG | - | chr3.3:76674335-76674354 | MS.gene06671:intron | 40.0% | |
| CATTGCATGGGAAAACAGAA+AGG | + | chr3.3:76674324-76674343 | None:intergenic | 40.0% | |
| GCAAGTTATAACTCATTCGC+AGG | + | chr3.3:76673293-76673312 | None:intergenic | 40.0% | |
| GCTCATTAACCAACTAAGCT+CGG | + | chr3.3:76673507-76673526 | None:intergenic | 40.0% | |
| GGTTTCTGTTTGTGGTACTA+GGG | - | chr3.3:76672696-76672715 | MS.gene06671:intron | 40.0% | |
| GTTGCGAGCTAAATAAAGTC+TGG | + | chr3.3:76673592-76673611 | None:intergenic | 40.0% | |
| TAAGCTCGGTCATTTGTTTG+CGG | + | chr3.3:76673493-76673512 | None:intergenic | 40.0% | |
| TCTCGCGAAAGATTCATCAT+TGG | + | chr3.3:76673534-76673553 | None:intergenic | 40.0% | |
| TGGTTTCTGTTTGTGGTACT+AGG | - | chr3.3:76672695-76672714 | MS.gene06671:intron | 40.0% | |
| TGTTAACCCTTCGGTTCTTA+GGG | + | chr3.3:76673643-76673662 | None:intergenic | 40.0% | |
| TTTGTCTGCAGAGAAAGTGA+CGG | - | chr3.3:76672918-76672937 | MS.gene06671:intron | 40.0% | |
| ! | AAGAGATGCCTGTCTTCTTT+TGG | + | chr3.3:76674362-76674381 | None:intergenic | 40.0% |
| ! | AGAATCAAAAGGGTACAGAG+GGG | - | chr3.3:76673198-76673217 | MS.gene06671:intron | 40.0% |
| ! | ATCTGAATTTGACTTCTGGG+TGG | - | chr3.3:76673554-76673573 | MS.gene06671:intron | 40.0% |
| ! | GAGAATCAAAAGGGTACAGA+GGG | - | chr3.3:76673197-76673216 | MS.gene06671:intron | 40.0% |
| !! | TGCCTCTAAAATCACAGTGA+CGG | + | chr3.3:76672969-76672988 | None:intergenic | 40.0% |
| ACTGTTGCCGATGTTTACTG+TGG | - | chr3.3:76674395-76674414 | MS.gene06671:intron | 45.0% | |
| AGTAAACATCGGCAACAGTG+TGG | + | chr3.3:76674394-76674413 | None:intergenic | 45.0% | |
| ATGAGGGATGCACTACAGAT+TGG | + | chr3.3:76673737-76673756 | None:intergenic | 45.0% | |
| CATGGGAAAACAGAAAGGCT+CGG | + | chr3.3:76674319-76674338 | None:intergenic | 45.0% | |
| CGCGAAAGATTCATCATTGG+TGG | + | chr3.3:76673531-76673550 | None:intergenic | 45.0% | |
| GAGGGATGAGTTACAACACA+AGG | + | chr3.3:76673395-76673414 | None:intergenic | 45.0% | |
| GTGTTAACCCTTCGGTTCTT+AGG | + | chr3.3:76673644-76673663 | None:intergenic | 45.0% | |
| GTTAACCCTTCGGTTCTTAG+GGG | + | chr3.3:76673642-76673661 | None:intergenic | 45.0% | |
| TGAGTTACAACACAAGGGAG+AGG | + | chr3.3:76673389-76673408 | None:intergenic | 45.0% | |
| TTGGGTTACCTGAAAAGCCT+TGG | + | chr3.3:76672461-76672480 | None:intergenic | 45.0% | |
| ! | GAAGTACGAAAGAGCGTATG+AGG | - | chr3.3:76674442-76674461 | MS.gene06671:CDS | 45.0% |
| ! | GACCGTCACTGTGATTTTAG+AGG | - | chr3.3:76672964-76672983 | MS.gene06671:intron | 45.0% |
| ! | GGAGAATCAAAAGGGTACAG+AGG | - | chr3.3:76673196-76673215 | MS.gene06671:intron | 45.0% |
| ! | TTTAGCTCGCAACCAAACTC+CGG | - | chr3.3:76673599-76673618 | MS.gene06671:intron | 45.0% |
| AAACATCGGCAACAGTGTGG+AGG | + | chr3.3:76674391-76674410 | None:intergenic | 50.0% | |
| GAAGACAGGCATCTCTTGAC+TGG | - | chr3.3:76674365-76674384 | MS.gene06671:intron | 50.0% | |
| TCACTGGGCCAAAAGAAGAC+AGG | - | chr3.3:76674351-76674370 | MS.gene06671:intron | 50.0% | |
| TGGTGATTGTCGTGAAGTGC+TGG | - | chr3.3:76674415-76674434 | MS.gene06671:intron | 50.0% | |
| TTACAGCAGCAGTACAAGCG+AGG | + | chr3.3:76672400-76672419 | None:intergenic | 50.0% | |
| ! | GGTGATTGTCGTGAAGTGCT+GGG | - | chr3.3:76674416-76674435 | MS.gene06671:intron | 50.0% |
| !! | ATTGTCGTGAAGTGCTGGGT+TGG | - | chr3.3:76674420-76674439 | MS.gene06671:intron | 50.0% |
| CAATCCACGCGCAACTCTTG+CGG | - | chr3.3:76673868-76673887 | MS.gene06671:intron | 55.0% | |
| CCTCTCCCCTAAGAACCGAA+GGG | - | chr3.3:76673634-76673653 | MS.gene06671:intron | 55.0% | |
| CCTTCGGTTCTTAGGGGAGA+GGG | + | chr3.3:76673636-76673655 | None:intergenic | 55.0% | |
| CTTCGGTTCTTAGGGGAGAG+GGG | + | chr3.3:76673635-76673654 | None:intergenic | 55.0% | |
| GGCGCTAGTATTCCGGAGTT+TGG | + | chr3.3:76673614-76673633 | None:intergenic | 55.0% | |
| ! | GCGTCCCAGAAGTACAAGGA+AGG | - | chr3.3:76674464-76674483 | MS.gene06671:CDS | 55.0% |
| ! | TGAGGCGTCCCAGAAGTACA+AGG | - | chr3.3:76674460-76674479 | MS.gene06671:CDS | 55.0% |
| AGGCTCGGCCATTTCTTCCC+TGG | + | chr3.3:76674304-76674323 | None:intergenic | 60.0% | |
| CCCTCTCCCCTAAGAACCGA+AGG | - | chr3.3:76673633-76673652 | MS.gene06671:intron | 60.0% | |
| CCCTTCGGTTCTTAGGGGAG+AGG | + | chr3.3:76673637-76673656 | None:intergenic | 60.0% | |
| !! | GGAGAGGGGCGCTAGTATTC+CGG | + | chr3.3:76673621-76673640 | None:intergenic | 60.0% |
| CTGACCGCAAGAGTTGCGCG+TGG | + | chr3.3:76673875-76673894 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 76672379 | 76674532 | 76672379 | ID=MS.gene06671 |
| chr3.3 | mRNA | 76672379 | 76674532 | 76672379 | ID=MS.gene06671.t1;Parent=MS.gene06671 |
| chr3.3 | exon | 76674440 | 76674532 | 76674440 | ID=MS.gene06671.t1.exon1;Parent=MS.gene06671.t1 |
| chr3.3 | CDS | 76674440 | 76674532 | 76674440 | ID=cds.MS.gene06671.t1;Parent=MS.gene06671.t1 |
| chr3.3 | exon | 76672379 | 76672606 | 76672379 | ID=MS.gene06671.t1.exon2;Parent=MS.gene06671.t1 |
| chr3.3 | CDS | 76672379 | 76672606 | 76672379 | ID=cds.MS.gene06671.t1;Parent=MS.gene06671.t1 |
| Gene Sequence |
| Protein sequence |
