Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057133.t1 | XP_003602285.1 | 100 | 106 | 0 | 0 | 1 | 106 | 1 | 106 | 2.40E-57 | 231.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057133.t1 | Q9T096 | 82.1 | 106 | 19 | 0 | 1 | 106 | 1 | 106 | 5.1e-48 | 191.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057133.t1 | G7J7H5 | 100.0 | 106 | 0 | 0 | 1 | 106 | 1 | 106 | 1.7e-57 | 231.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057133 | MS.gene06671 | 0.963887 | 1.23E-122 | -1.69E-46 |
| MS.gene057133 | MS.gene48520 | 0.812743 | 3.64E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene71872 | MS.gene057133 | PPI |
| MS.gene059765 | MS.gene057133 | PPI |
| MS.gene060686 | MS.gene057133 | PPI |
| MS.gene69238 | MS.gene057133 | PPI |
| MS.gene58367 | MS.gene057133 | PPI |
| MS.gene057330 | MS.gene057133 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057133.t1 | MTR_3g091840 | 100.000 | 106 | 0 | 0 | 1 | 106 | 1 | 106 | 2.42e-78 | 225 |
| MS.gene057133.t1 | MTR_8g027255 | 67.619 | 105 | 34 | 0 | 1 | 105 | 1 | 105 | 1.81e-50 | 155 |
| MS.gene057133.t1 | MTR_1g077750 | 67.000 | 100 | 29 | 1 | 1 | 100 | 1 | 96 | 5.63e-46 | 144 |
| MS.gene057133.t1 | MTR_2g078670 | 55.789 | 95 | 42 | 0 | 8 | 102 | 12 | 106 | 7.19e-35 | 116 |
| MS.gene057133.t1 | MTR_3g070330 | 52.174 | 92 | 44 | 0 | 8 | 99 | 35 | 126 | 1.33e-33 | 113 |
| MS.gene057133.t1 | MTR_5g082490 | 52.128 | 94 | 45 | 0 | 8 | 101 | 12 | 105 | 2.20e-33 | 112 |
| MS.gene057133.t1 | MTR_3g070330 | 51.064 | 94 | 46 | 0 | 8 | 101 | 35 | 128 | 3.37e-33 | 113 |
| MS.gene057133.t1 | MTR_7g068250 | 53.191 | 94 | 44 | 0 | 9 | 102 | 13 | 106 | 1.80e-32 | 110 |
| MS.gene057133.t1 | MTR_8g058785 | 47.423 | 97 | 51 | 0 | 8 | 104 | 12 | 108 | 4.85e-31 | 107 |
| MS.gene057133.t1 | MTR_8g061270 | 47.423 | 97 | 51 | 0 | 8 | 104 | 12 | 108 | 4.85e-31 | 107 |
| MS.gene057133.t1 | MTR_4g088505 | 46.316 | 95 | 51 | 0 | 8 | 102 | 12 | 106 | 1.44e-27 | 97.8 |
| MS.gene057133.t1 | MTR_1g077760 | 67.857 | 56 | 18 | 0 | 44 | 99 | 1 | 56 | 7.54e-22 | 83.6 |
| MS.gene057133.t1 | MTR_4g088505 | 43.056 | 72 | 41 | 0 | 8 | 79 | 12 | 83 | 1.11e-17 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057133.t1 | AT4G27745 | 82.075 | 106 | 19 | 0 | 1 | 106 | 1 | 106 | 1.53e-63 | 188 |
| MS.gene057133.t1 | AT4G27745 | 82.075 | 106 | 19 | 0 | 1 | 106 | 1 | 106 | 1.53e-63 | 188 |
| MS.gene057133.t1 | AT4G27745 | 82.075 | 106 | 19 | 0 | 1 | 106 | 1 | 106 | 1.53e-63 | 188 |
| MS.gene057133.t1 | AT4G27745 | 82.075 | 106 | 19 | 0 | 1 | 106 | 1 | 106 | 1.53e-63 | 188 |
| MS.gene057133.t1 | AT5G53940 | 51.546 | 97 | 47 | 0 | 8 | 104 | 12 | 108 | 4.52e-34 | 114 |
| MS.gene057133.t1 | AT3G11230 | 52.128 | 94 | 45 | 0 | 8 | 101 | 12 | 105 | 4.57e-34 | 114 |
| MS.gene057133.t1 | AT4G27740 | 54.839 | 93 | 42 | 0 | 10 | 102 | 10 | 102 | 5.10e-34 | 113 |
| MS.gene057133.t1 | AT3G11230 | 52.128 | 94 | 45 | 0 | 8 | 101 | 45 | 138 | 7.74e-34 | 115 |
| MS.gene057133.t1 | AT3G11230 | 53.933 | 89 | 41 | 0 | 10 | 98 | 14 | 102 | 1.27e-33 | 112 |
| MS.gene057133.t1 | AT3G11230 | 53.933 | 89 | 41 | 0 | 10 | 98 | 47 | 135 | 1.74e-33 | 113 |
| MS.gene057133.t1 | AT3G08990 | 53.191 | 94 | 44 | 0 | 9 | 102 | 13 | 106 | 4.92e-33 | 112 |
| MS.gene057133.t1 | AT3G08990 | 53.191 | 94 | 44 | 0 | 9 | 102 | 13 | 106 | 4.92e-33 | 112 |
| MS.gene057133.t1 | AT3G08990 | 53.191 | 94 | 44 | 0 | 9 | 102 | 13 | 106 | 4.92e-33 | 112 |
| MS.gene057133.t1 | AT3G55890 | 54.255 | 94 | 43 | 0 | 8 | 101 | 12 | 105 | 1.03e-32 | 110 |
| MS.gene057133.t1 | AT3G55890 | 54.255 | 94 | 43 | 0 | 8 | 101 | 12 | 105 | 1.03e-32 | 110 |
| MS.gene057133.t1 | AT3G55890 | 55.056 | 89 | 40 | 0 | 9 | 97 | 13 | 101 | 2.08e-32 | 109 |
| MS.gene057133.t1 | AT3G55890 | 55.056 | 89 | 40 | 0 | 9 | 97 | 13 | 101 | 2.08e-32 | 109 |
| MS.gene057133.t1 | AT2G40110 | 48.936 | 94 | 48 | 0 | 8 | 101 | 12 | 105 | 2.90e-31 | 107 |
| MS.gene057133.t1 | AT2G40110 | 48.352 | 91 | 47 | 0 | 8 | 98 | 12 | 102 | 8.23e-31 | 105 |
| MS.gene057133.t1 | AT2G40110 | 44.444 | 72 | 40 | 0 | 8 | 79 | 12 | 83 | 1.62e-21 | 81.6 |
| MS.gene057133.t1 | AT2G40110 | 44.444 | 72 | 40 | 0 | 8 | 79 | 12 | 83 | 1.62e-21 | 81.6 |
Find 23 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAGATGCCTGTCTTCTTT+TGG | 0.254022 | 3.1:+73801325 | None:intergenic |
| TGGTGATTGTCGTGAAGTGC+TGG | 0.372228 | 3.1:-73801269 | MS.gene057133:CDS |
| TTGGGTTACCTGAAAAGCCT+TGG | 0.462037 | 3.1:+73803239 | None:intergenic |
| GAAGTACGAAAGAGCGTATG+AGG | 0.502168 | 3.1:-73801242 | MS.gene057133:CDS |
| TCATGATGATATTATTTCCA+AGG | 0.502878 | 3.1:-73803256 | MS.gene057133:CDS |
| GAAGACAGGCATCTCTTGAC+TGG | 0.509264 | 3.1:-73801319 | MS.gene057133:CDS |
| CAGTGACAACATTCATTGCA+TGG | 0.547511 | 3.1:+73801350 | None:intergenic |
| CATGCAATGAATGTTGTCAC+TGG | 0.550116 | 3.1:-73801349 | MS.gene057133:CDS |
| ATTGTCGTGAAGTGCTGGGT+TGG | 0.550480 | 3.1:-73801264 | MS.gene057133:CDS |
| CATTGCATGGGAAAACAGAA+AGG | 0.570564 | 3.1:+73801363 | None:intergenic |
| TCACTGGGCCAAAAGAAGAC+AGG | 0.572382 | 3.1:-73801333 | MS.gene057133:CDS |
| GGTGATTGTCGTGAAGTGCT+GGG | 0.578151 | 3.1:-73801268 | MS.gene057133:CDS |
| CATGGGAAAACAGAAAGGCT+CGG | 0.593139 | 3.1:+73801368 | None:intergenic |
| AGTGACAACATTCATTGCAT+GGG | 0.597466 | 3.1:+73801351 | None:intergenic |
| TGAGGCGTCCCAGAAGTACA+AGG | 0.604854 | 3.1:-73801224 | MS.gene057133:CDS |
| GCGTCCCAGAAGTACAAGGA+AGG | 0.640509 | 3.1:-73801220 | MS.gene057133:CDS |
| ATGCAATGAATGTTGTCACT+GGG | 0.665460 | 3.1:-73801348 | MS.gene057133:CDS |
| AAACATCGGCAACAGTGTGG+AGG | 0.669170 | 3.1:+73801296 | None:intergenic |
| TATCATCATGAAGTGAAACA+TGG | 0.670134 | 3.1:+73803268 | None:intergenic |
| TTACAGCAGCAGTACAAGCG+AGG | 0.670520 | 3.1:+73803300 | None:intergenic |
| ACAATCACCACAGTAAACAT+CGG | 0.673082 | 3.1:+73801282 | None:intergenic |
| AGTAAACATCGGCAACAGTG+TGG | 0.687539 | 3.1:+73801293 | None:intergenic |
| ACTGTTGCCGATGTTTACTG+TGG | 0.707487 | 3.1:-73801289 | MS.gene057133:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAATGGAAATAAT+TGG | + | chr3.1:73801275-73801294 | None:intergenic | 10.0% |
| !! | AAAAAAAAATGGAAATAATT+GGG | + | chr3.1:73801274-73801293 | None:intergenic | 10.0% |
| !!! | ATTACTTTTACTAATAAAAC+AGG | + | chr3.1:73802788-73802807 | None:intergenic | 15.0% |
| !!! | GTAATTTTTAAAATCAAACT+TGG | + | chr3.1:73801397-73801416 | None:intergenic | 15.0% |
| !!! | GTTTGTAAATAGAATTTTTA+AGG | - | chr3.1:73801586-73801605 | MS.gene057133:intron | 15.0% |
| !!! | TTTGTTTCTTAAATAGAAAA+TGG | - | chr3.1:73802870-73802889 | MS.gene057133:intron | 15.0% |
| !! | AACAAAAAAAGAAATGCTAA+AGG | + | chr3.1:73802847-73802866 | None:intergenic | 20.0% |
| !! | ATACTATAGTTTATATAGAG+AGG | + | chr3.1:73802516-73802535 | None:intergenic | 20.0% |
| !! | GTAATATTATGAAACAAGTT+TGG | + | chr3.1:73802164-73802183 | None:intergenic | 20.0% |
| !! | TACTATAGTTTATATAGAGA+GGG | + | chr3.1:73802515-73802534 | None:intergenic | 20.0% |
| !! | TGAAAAGTCAAAAATTGTTA+TGG | - | chr3.1:73803307-73803326 | MS.gene057133:CDS | 20.0% |
| !!! | AGAATTAATTTGTTAGGATA+TGG | - | chr3.1:73801927-73801946 | MS.gene057133:intron | 20.0% |
| !!! | GAATTAATTTGTTAGGATAT+GGG | - | chr3.1:73801928-73801947 | MS.gene057133:intron | 20.0% |
| !!! | TTTCATTAATTTTGTAACCA+GGG | - | chr3.1:73803092-73803111 | MS.gene057133:intron | 20.0% |
| !!! | TTTTCATTAATTTTGTAACC+AGG | - | chr3.1:73803091-73803110 | MS.gene057133:intron | 20.0% |
| ! | ACAATATCAGTAAATGATCA+AGG | + | chr3.1:73803072-73803091 | None:intergenic | 25.0% |
| ! | AGTGACACAATTAAACATAT+GGG | - | chr3.1:73801860-73801879 | MS.gene057133:intron | 25.0% |
| ! | ATATGAATAGGAGAATCAAA+AGG | - | chr3.1:73801992-73802011 | MS.gene057133:intron | 25.0% |
| ! | ATCATGCATATCTTGTATTT+AGG | - | chr3.1:73801544-73801563 | MS.gene057133:intron | 25.0% |
| ! | ATTAATTCTACATCCTAACA+AGG | + | chr3.1:73801916-73801935 | None:intergenic | 25.0% |
| ! | ATTAATTTCTCTTGCACTAT+AGG | - | chr3.1:73801370-73801389 | MS.gene057133:CDS | 25.0% |
| ! | CATCAAAAGAAGAATTTAGT+TGG | + | chr3.1:73802995-73803014 | None:intergenic | 25.0% |
| ! | CTCTTTAGTAAATAAAGCAA+TGG | - | chr3.1:73802712-73802731 | MS.gene057133:intron | 25.0% |
| ! | TATGAATAGGAGAATCAAAA+GGG | - | chr3.1:73801993-73802012 | MS.gene057133:intron | 25.0% |
| ! | TCATGATGATATTATTTCCA+AGG | - | chr3.1:73801236-73801255 | MS.gene057133:CDS | 25.0% |
| ! | TCATGCATATCTTGTATTTA+GGG | - | chr3.1:73801545-73801564 | MS.gene057133:intron | 25.0% |
| ! | TTATAAAAGGGGGAAATATT+GGG | - | chr3.1:73802740-73802759 | MS.gene057133:intron | 25.0% |
| ! | TTATGAACCTAGAAATTGTA+CGG | + | chr3.1:73802820-73802839 | None:intergenic | 25.0% |
| ! | TTCAATTGCAATTTCAAATG+AGG | + | chr3.1:73802613-73802632 | None:intergenic | 25.0% |
| !! | CTATATTTAGAATGAATGCA+CGG | - | chr3.1:73801612-73801631 | MS.gene057133:intron | 25.0% |
| !! | TCATTTGAAATTGCAATTGA+AGG | - | chr3.1:73802612-73802631 | MS.gene057133:intron | 25.0% |
| !!! | GGATGTAGAATTAATTTGTT+AGG | - | chr3.1:73801921-73801940 | MS.gene057133:intron | 25.0% |
| !!! | TTTTTTTTGTGTTAACCCTT+CGG | + | chr3.1:73802457-73802476 | None:intergenic | 25.0% |
| AACAGACTGCATATTCAATT+AGG | + | chr3.1:73802576-73802595 | None:intergenic | 30.0% | |
| AATCAGCAATGACATACAAT+AGG | + | chr3.1:73801353-73801372 | None:intergenic | 30.0% | |
| ACAGACTGCATATTCAATTA+GGG | + | chr3.1:73802575-73802594 | None:intergenic | 30.0% | |
| AGTTATCACAGTAGCAATTT+AGG | - | chr3.1:73801664-73801683 | MS.gene057133:intron | 30.0% | |
| ATAGGCATAAACATTCCAAA+TGG | - | chr3.1:73802956-73802975 | MS.gene057133:intron | 30.0% | |
| ATCGATACTGAATGTTTGAT+AGG | - | chr3.1:73802938-73802957 | MS.gene057133:intron | 30.0% | |
| CAAAAATTGTTATGGAGAAC+TGG | - | chr3.1:73803315-73803334 | MS.gene057133:CDS | 30.0% | |
| CAGTGACACAATTAAACATA+TGG | - | chr3.1:73801859-73801878 | MS.gene057133:intron | 30.0% | |
| CATATCTTGTATTTAGGGAT+TGG | - | chr3.1:73801550-73801569 | MS.gene057133:intron | 30.0% | |
| CCAGATTATCATATATCAGA+TGG | - | chr3.1:73801478-73801497 | MS.gene057133:intron | 30.0% | |
| CCATCTGATATATGATAATC+TGG | + | chr3.1:73801481-73801500 | None:intergenic | 30.0% | |
| GGTACTTGGTTTAATTACAA+TGG | + | chr3.1:73802236-73802255 | None:intergenic | 30.0% | |
| GTTATAAAAGGGGGAAATAT+TGG | - | chr3.1:73802739-73802758 | MS.gene057133:intron | 30.0% | |
| TACAACAAGTTTCACATACA+TGG | + | chr3.1:73802257-73802276 | None:intergenic | 30.0% | |
| TATCATCATGAAGTGAAACA+TGG | + | chr3.1:73801227-73801246 | None:intergenic | 30.0% | |
| TGGATAAAATGGCAATTTGA+AGG | + | chr3.1:73802136-73802155 | None:intergenic | 30.0% | |
| TGTGAGTATCTCATATGAAT+AGG | - | chr3.1:73801980-73801999 | MS.gene057133:intron | 30.0% | |
| TTGTATTCCGTACAATTTCT+AGG | - | chr3.1:73802810-73802829 | MS.gene057133:intron | 30.0% | |
| ! | AGAATCTGAATTTGACTTCT+GGG | - | chr3.1:73802356-73802375 | MS.gene057133:intron | 30.0% |
| ! | TATTATTTCCAAGGCTTTTC+AGG | - | chr3.1:73801245-73801264 | MS.gene057133:CDS | 30.0% |
| ! | TTAAGATTTTCGACCTTGTT+AGG | - | chr3.1:73801900-73801919 | MS.gene057133:intron | 30.0% |
| !! | AAACTTGTTGTAGCAACAAA+AGG | - | chr3.1:73802265-73802284 | MS.gene057133:intron | 30.0% |
| !! | TGTATCTGTAAAGTTGCTTT+TGG | - | chr3.1:73801803-73801822 | MS.gene057133:intron | 30.0% |
| !!! | AGTTGCTTTTGGTTGAAAAA+CGG | - | chr3.1:73801814-73801833 | MS.gene057133:intron | 30.0% |
| AACTGACATGTGTACTTGTA+CGG | + | chr3.1:73801648-73801667 | None:intergenic | 35.0% | |
| AATGGCATGAGTTAATACGA+GGG | + | chr3.1:73802218-73802237 | None:intergenic | 35.0% | |
| ACAATCACCACAGTAAACAT+CGG | + | chr3.1:73803213-73803232 | None:intergenic | 35.0% | |
| ACATATGGGATATGTTGAGA+AGG | - | chr3.1:73801874-73801893 | MS.gene057133:intron | 35.0% | |
| AGTGACAACATTCATTGCAT+GGG | + | chr3.1:73803144-73803163 | None:intergenic | 35.0% | |
| AGTTTCACATACATGGTACT+TGG | + | chr3.1:73802250-73802269 | None:intergenic | 35.0% | |
| ATGCAATGAATGTTGTCACT+GGG | - | chr3.1:73803144-73803163 | MS.gene057133:intron | 35.0% | |
| CAATTAGGGGTTAAACATGA+GGG | + | chr3.1:73802561-73802580 | None:intergenic | 35.0% | |
| CAGACTGCATATTCAATTAG+GGG | + | chr3.1:73802574-73802593 | None:intergenic | 35.0% | |
| CAGCCAAATATCACAAAGAT+TGG | - | chr3.1:73802905-73802924 | MS.gene057133:intron | 35.0% | |
| CATCGTCTACAATGAATTTC+AGG | - | chr3.1:73801309-73801328 | MS.gene057133:CDS | 35.0% | |
| CTCGCAATTGATTAGAAGTT+AGG | + | chr3.1:73801454-73801473 | None:intergenic | 35.0% | |
| CTGCCAATCTTTGTGATATT+TGG | + | chr3.1:73802911-73802930 | None:intergenic | 35.0% | |
| GACAGGTTTACAATAGTAGT+TGG | + | chr3.1:73802493-73802512 | None:intergenic | 35.0% | |
| GCAATTTGAAGGAAATCTGA+CGG | + | chr3.1:73802125-73802144 | None:intergenic | 35.0% | |
| GGAGAAAACAACTATCCATT+TGG | + | chr3.1:73802974-73802993 | None:intergenic | 35.0% | |
| TAGTTTATATAGAGAGGGAC+AGG | + | chr3.1:73802510-73802529 | None:intergenic | 35.0% | |
| TATCAGATGGTTTCTGTTTG+TGG | - | chr3.1:73801491-73801510 | MS.gene057133:intron | 35.0% | |
| TCAATTAGGGGTTAAACATG+AGG | + | chr3.1:73802562-73802581 | None:intergenic | 35.0% | |
| ! | AAACGGCATTTTAAATGTGC+TGG | - | chr3.1:73801831-73801850 | MS.gene057133:intron | 35.0% |
| ! | AACGGCATTTTAAATGTGCT+GGG | - | chr3.1:73801832-73801851 | MS.gene057133:intron | 35.0% |
| ! | AATGGCTCTGTTATAAAAGG+GGG | - | chr3.1:73802730-73802749 | MS.gene057133:intron | 35.0% |
| ! | AGCAATGGCTCTGTTATAAA+AGG | - | chr3.1:73802727-73802746 | MS.gene057133:intron | 35.0% |
| ! | ATGAAACAAGTTTGGCGTTT+TGG | + | chr3.1:73802156-73802175 | None:intergenic | 35.0% |
| ! | ATTTTCCTTCCTTGTACTTC+TGG | + | chr3.1:73803280-73803299 | None:intergenic | 35.0% |
| ! | CAATGGCTCTGTTATAAAAG+GGG | - | chr3.1:73802729-73802748 | MS.gene057133:intron | 35.0% |
| ! | GAGAATCTGAATTTGACTTC+TGG | - | chr3.1:73802355-73802374 | MS.gene057133:intron | 35.0% |
| ! | GCAATGGCTCTGTTATAAAA+GGG | - | chr3.1:73802728-73802747 | MS.gene057133:intron | 35.0% |
| ! | TGTTAGGATATGGGTTATGA+AGG | - | chr3.1:73801937-73801956 | MS.gene057133:intron | 35.0% |
| ! | TTTTCCTTCCTTGTACTTCT+GGG | + | chr3.1:73803279-73803298 | None:intergenic | 35.0% |
| ! | TTTTGTAACCAGGGAAGAAA+TGG | - | chr3.1:73803101-73803120 | MS.gene057133:intron | 35.0% |
| !! | GTTTGGCGTTTTGGATAAAA+TGG | + | chr3.1:73802147-73802166 | None:intergenic | 35.0% |
| AACAAATGACCGAGCTTAGT+TGG | - | chr3.1:73802300-73802319 | MS.gene057133:intron | 40.0% | |
| AGGGATGAGTTACAACACAA+GGG | + | chr3.1:73802199-73802218 | None:intergenic | 40.0% | |
| CAATGGCATGAGTTAATACG+AGG | + | chr3.1:73802219-73802238 | None:intergenic | 40.0% | |
| CAGTGACAACATTCATTGCA+TGG | + | chr3.1:73803145-73803164 | None:intergenic | 40.0% | |
| CATGCAATGAATGTTGTCAC+TGG | - | chr3.1:73803143-73803162 | MS.gene057133:intron | 40.0% | |
| CATTGCATGGGAAAACAGAA+AGG | + | chr3.1:73803132-73803151 | None:intergenic | 40.0% | |
| GCAAGTTATAACTCATTCGC+AGG | + | chr3.1:73802098-73802117 | None:intergenic | 40.0% | |
| GCTCATTAACCAACTAAGCT+CGG | + | chr3.1:73802312-73802331 | None:intergenic | 40.0% | |
| GGTTTCTGTTTGTGGTACTA+GGG | - | chr3.1:73801499-73801518 | MS.gene057133:intron | 40.0% | |
| GTTGCGAGCTAAATAAAGTC+TGG | + | chr3.1:73802397-73802416 | None:intergenic | 40.0% | |
| TAAGCTCGGTCATTTGTTTG+CGG | + | chr3.1:73802298-73802317 | None:intergenic | 40.0% | |
| TCTCGCGAAAGATTCATCAT+TGG | + | chr3.1:73802339-73802358 | None:intergenic | 40.0% | |
| TGGTTTCTGTTTGTGGTACT+AGG | - | chr3.1:73801498-73801517 | MS.gene057133:intron | 40.0% | |
| TGTTAACCCTTCGGTTCTTA+GGG | + | chr3.1:73802448-73802467 | None:intergenic | 40.0% | |
| TTTGTCTGCAGAGAAAGTGA+CGG | - | chr3.1:73801721-73801740 | MS.gene057133:intron | 40.0% | |
| ! | AAGAGATGCCTGTCTTCTTT+TGG | + | chr3.1:73803170-73803189 | None:intergenic | 40.0% |
| ! | AATGAATGCACGGATTGTAC+AGG | - | chr3.1:73801622-73801641 | MS.gene057133:intron | 40.0% |
| ! | AGAATCAAAAGGGTACAGAG+GGG | - | chr3.1:73802003-73802022 | MS.gene057133:intron | 40.0% |
| ! | ATCTGAATTTGACTTCTGGG+TGG | - | chr3.1:73802359-73802378 | MS.gene057133:intron | 40.0% |
| ! | GAGAATCAAAAGGGTACAGA+GGG | - | chr3.1:73802002-73802021 | MS.gene057133:intron | 40.0% |
| !! | TGCCTCTAAAATCACAGTGA+CGG | + | chr3.1:73801772-73801791 | None:intergenic | 40.0% |
| ACTGTTGCCGATGTTTACTG+TGG | - | chr3.1:73803203-73803222 | MS.gene057133:intron | 45.0% | |
| AGTAAACATCGGCAACAGTG+TGG | + | chr3.1:73803202-73803221 | None:intergenic | 45.0% | |
| ATGAGGGATGCACTACAGAT+TGG | + | chr3.1:73802545-73802564 | None:intergenic | 45.0% | |
| CATGGGAAAACAGAAAGGCT+CGG | + | chr3.1:73803127-73803146 | None:intergenic | 45.0% | |
| CGCGAAAGATTCATCATTGG+TGG | + | chr3.1:73802336-73802355 | None:intergenic | 45.0% | |
| GAGGGATGAGTTACAACACA+AGG | + | chr3.1:73802200-73802219 | None:intergenic | 45.0% | |
| GTGTTAACCCTTCGGTTCTT+AGG | + | chr3.1:73802449-73802468 | None:intergenic | 45.0% | |
| GTTAACCCTTCGGTTCTTAG+GGG | + | chr3.1:73802447-73802466 | None:intergenic | 45.0% | |
| TGAGTTACAACACAAGGGAG+AGG | + | chr3.1:73802194-73802213 | None:intergenic | 45.0% | |
| TTGGGTTACCTGAAAAGCCT+TGG | + | chr3.1:73801256-73801275 | None:intergenic | 45.0% | |
| ! | GAAGTACGAAAGAGCGTATG+AGG | - | chr3.1:73803250-73803269 | MS.gene057133:CDS | 45.0% |
| ! | GACCGTCACTGTGATTTTAG+AGG | - | chr3.1:73801767-73801786 | MS.gene057133:intron | 45.0% |
| ! | GGAGAATCAAAAGGGTACAG+AGG | - | chr3.1:73802001-73802020 | MS.gene057133:intron | 45.0% |
| ! | TTTAGCTCGCAACCAAACTC+CGG | - | chr3.1:73802404-73802423 | MS.gene057133:intron | 45.0% |
| !! | TTAACAAAAAAAAAAAAAAA+TGG | + | chr3.1:73801285-73801304 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTTTTTTTTGTTA+AGG | - | chr3.1:73801284-73801303 | MS.gene057133:CDS | 5.0% |
| AAACATCGGCAACAGTGTGG+AGG | + | chr3.1:73803199-73803218 | None:intergenic | 50.0% | |
| GAAGACAGGCATCTCTTGAC+TGG | - | chr3.1:73803173-73803192 | MS.gene057133:intron | 50.0% | |
| TCACTGGGCCAAAAGAAGAC+AGG | - | chr3.1:73803159-73803178 | MS.gene057133:intron | 50.0% | |
| TGGTGATTGTCGTGAAGTGC+TGG | - | chr3.1:73803223-73803242 | MS.gene057133:intron | 50.0% | |
| TTACAGCAGCAGTACAAGCG+AGG | + | chr3.1:73801195-73801214 | None:intergenic | 50.0% | |
| ! | GGTGATTGTCGTGAAGTGCT+GGG | - | chr3.1:73803224-73803243 | MS.gene057133:intron | 50.0% |
| !! | ATTGTCGTGAAGTGCTGGGT+TGG | - | chr3.1:73803228-73803247 | MS.gene057133:intron | 50.0% |
| CAATCCACGCGCAACTCTTG+CGG | - | chr3.1:73802676-73802695 | MS.gene057133:intron | 55.0% | |
| CCTCTCCCCTAAGAACCGAA+GGG | - | chr3.1:73802439-73802458 | MS.gene057133:intron | 55.0% | |
| CCTTCGGTTCTTAGGGGAGA+GGG | + | chr3.1:73802441-73802460 | None:intergenic | 55.0% | |
| CTTCGGTTCTTAGGGGAGAG+GGG | + | chr3.1:73802440-73802459 | None:intergenic | 55.0% | |
| GGCGCTAGTATTCCGGAGTT+TGG | + | chr3.1:73802419-73802438 | None:intergenic | 55.0% | |
| ! | GCGTCCCAGAAGTACAAGGA+AGG | - | chr3.1:73803272-73803291 | MS.gene057133:CDS | 55.0% |
| ! | TGAGGCGTCCCAGAAGTACA+AGG | - | chr3.1:73803268-73803287 | MS.gene057133:CDS | 55.0% |
| AGGCTCGGCCATTTCTTCCC+TGG | + | chr3.1:73803112-73803131 | None:intergenic | 60.0% | |
| ATGACCGCAAGAGTTGCGCG+TGG | + | chr3.1:73802683-73802702 | None:intergenic | 60.0% | |
| CCCTCTCCCCTAAGAACCGA+AGG | - | chr3.1:73802438-73802457 | MS.gene057133:intron | 60.0% | |
| CCCTTCGGTTCTTAGGGGAG+AGG | + | chr3.1:73802442-73802461 | None:intergenic | 60.0% | |
| !! | GGAGAGGGGCGCTAGTATTC+CGG | + | chr3.1:73802426-73802445 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 73801174 | 73803340 | 73801174 | ID=MS.gene057133 |
| chr3.1 | mRNA | 73801174 | 73803340 | 73801174 | ID=MS.gene057133.t1;Parent=MS.gene057133 |
| chr3.1 | exon | 73803248 | 73803340 | 73803248 | ID=MS.gene057133.t1.exon1;Parent=MS.gene057133.t1 |
| chr3.1 | CDS | 73803248 | 73803340 | 73803248 | ID=cds.MS.gene057133.t1;Parent=MS.gene057133.t1 |
| chr3.1 | exon | 73801174 | 73801401 | 73801174 | ID=MS.gene057133.t1.exon2;Parent=MS.gene057133.t1 |
| chr3.1 | CDS | 73801174 | 73801401 | 73801174 | ID=cds.MS.gene057133.t1;Parent=MS.gene057133.t1 |
| Gene Sequence |
| Protein sequence |
