Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06689.t1 | XP_013461426.2 | 97.6 | 165 | 4 | 0 | 1 | 165 | 1 | 165 | 4.40E-82 | 313.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06689.t1 | Q8VZV9 | 60.6 | 155 | 58 | 1 | 11 | 165 | 10 | 161 | 1.6e-48 | 193.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06689.t1 | A0A396IYW6 | 97.6 | 165 | 4 | 0 | 1 | 165 | 1 | 165 | 3.1e-82 | 313.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene06689 | 0.839609 | 1.43E-57 | -1.69E-46 |
| MS.gene05101 | MS.gene06689 | 0.809056 | 2.28E-50 | -1.69E-46 |
| MS.gene052322 | MS.gene06689 | 0.809179 | 2.15E-50 | -1.69E-46 |
| MS.gene052326 | MS.gene06689 | 0.810498 | 1.12E-50 | -1.69E-46 |
| MS.gene054802 | MS.gene06689 | 0.810919 | 9.07E-51 | -1.69E-46 |
| MS.gene054803 | MS.gene06689 | 0.806894 | 6.59E-50 | -1.69E-46 |
| MS.gene054804 | MS.gene06689 | 0.812075 | 5.09E-51 | -1.69E-46 |
| MS.gene055277 | MS.gene06689 | 0.835137 | 2.00E-56 | -1.69E-46 |
| MS.gene055422 | MS.gene06689 | 0.808288 | 3.33E-50 | -1.69E-46 |
| MS.gene055428 | MS.gene06689 | 0.817407 | 3.35E-52 | -1.69E-46 |
| MS.gene057011 | MS.gene06689 | 0.801756 | 7.75E-49 | -1.69E-46 |
| MS.gene058233 | MS.gene06689 | 0.800975 | 1.12E-48 | -1.69E-46 |
| MS.gene058660 | MS.gene06689 | 0.824457 | 7.99E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06689.t1 | MTR_3g491820 | 96.970 | 165 | 4 | 1 | 1 | 165 | 1 | 164 | 8.15e-115 | 322 |
| MS.gene06689.t1 | MTR_3g491820 | 98.473 | 131 | 2 | 0 | 35 | 165 | 1 | 131 | 3.14e-93 | 266 |
| MS.gene06689.t1 | MTR_3g491820 | 99.010 | 101 | 1 | 0 | 65 | 165 | 1 | 101 | 9.47e-70 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06689.t1 | AT5G24314 | 60.645 | 155 | 58 | 1 | 11 | 165 | 10 | 161 | 7.02e-68 | 203 |
| MS.gene06689.t1 | AT5G24314 | 57.669 | 163 | 58 | 2 | 11 | 165 | 10 | 169 | 1.27e-65 | 198 |
Find 40 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGTCGAAGAGAGAGTAAA+TGG | 0.213475 | 3.3:-76500557 | None:intergenic |
| CACCACTTTCCTTTCGCATT+TGG | 0.243431 | 3.3:-76500809 | None:intergenic |
| TGATTCTCTGCCCTACAAAA+TGG | 0.340113 | 3.3:+76502318 | MS.gene06689:CDS |
| AATATGGAGGCGAAGGAAAA+TGG | 0.348814 | 3.3:+76500839 | MS.gene06689:CDS |
| GAGTCTGATCCCTTCAAACC+TGG | 0.410327 | 3.3:+76502589 | MS.gene06689:CDS |
| TGAGGGAAAACTCTTGCAAT+TGG | 0.438639 | 3.3:+76502384 | MS.gene06689:CDS |
| AAAGTGGTGGACGAAGAATA+TGG | 0.452551 | 3.3:+76500823 | MS.gene06689:CDS |
| GGAGCAGGTGAGGAAGATAA+AGG | 0.452829 | 3.3:+76502360 | MS.gene06689:CDS |
| TCAGACTCGGCATACGCCTC+TGG | 0.453063 | 3.3:-76502574 | None:intergenic |
| CTCACCTGCTCCTCGAGAAA+AGG | 0.458089 | 3.3:-76502349 | None:intergenic |
| ATAATGAGGCCCAGGTTTGA+AGG | 0.480274 | 3.3:-76502599 | None:intergenic |
| GAGAGCAACATGGATGAGTA+TGG | 0.481625 | 3.3:+76502487 | MS.gene06689:CDS |
| GGTGAGGAAGATAAAGGATG+AGG | 0.481739 | 3.3:+76502366 | MS.gene06689:CDS |
| CGCCTCTGGACGGTAAAATC+CGG | 0.489373 | 3.3:-76502560 | None:intergenic |
| ATTACTCAAAACATGAAGAA+TGG | 0.511919 | 3.3:-76502524 | None:intergenic |
| GCGAGTTAACACTCAGGCTC+GGG | 0.514482 | 3.3:-76500693 | None:intergenic |
| TGCGAGTTAACACTCAGGCT+CGG | 0.517311 | 3.3:-76500694 | None:intergenic |
| TAAAACTCTTTCAAATAATG+AGG | 0.525568 | 3.3:-76502613 | None:intergenic |
| AAGTCGAAGAGAGAGTAAAT+GGG | 0.538130 | 3.3:-76500556 | None:intergenic |
| TCTTTCAAATAATGAGGCCC+AGG | 0.542211 | 3.3:-76502607 | None:intergenic |
| AGTAATCGAGTGAATGATGC+CGG | 0.544993 | 3.3:+76502541 | MS.gene06689:CDS |
| GTGAGGAAGATAAAGGATGA+GGG | 0.559910 | 3.3:+76502367 | MS.gene06689:CDS |
| TAATGAGGCCCAGGTTTGAA+GGG | 0.566321 | 3.3:-76502598 | None:intergenic |
| CAGAAGATAGAATTAAGAGC+TGG | 0.569406 | 3.3:+76500658 | MS.gene06689:intron |
| GACGAAGAATATGGAGGCGA+AGG | 0.570823 | 3.3:+76500832 | MS.gene06689:CDS |
| AGTCTGATCCCTTCAAACCT+GGG | 0.572137 | 3.3:+76502590 | MS.gene06689:CDS |
| GAGCCTGAGTGTTAACTCGC+AGG | 0.575752 | 3.3:+76500696 | MS.gene06689:CDS |
| TCTTGCAATTGGACATAGAG+AGG | 0.595233 | 3.3:+76502395 | MS.gene06689:CDS |
| ATCCAAATGCGAAAGGAAAG+TGG | 0.601949 | 3.3:+76500807 | MS.gene06689:CDS |
| AGGTTTGAAGGGATCAGACT+CGG | 0.605147 | 3.3:-76502587 | None:intergenic |
| GTTGCTCTCAACATAAGCGT+TGG | 0.607357 | 3.3:-76502473 | None:intergenic |
| CGCTTATGTTGAGAGCAACA+TGG | 0.607844 | 3.3:+76502477 | MS.gene06689:CDS |
| TGTGAATGAGATAGCAGCTG+AGG | 0.626703 | 3.3:+76502450 | MS.gene06689:CDS |
| GATGGTAATCCAAATGCGAA+AGG | 0.635273 | 3.3:+76500800 | MS.gene06689:intron |
| ACTCGGCATACGCCTCTGGA+CGG | 0.681095 | 3.3:-76502570 | None:intergenic |
| AGAGAGTAAATGGGTTTACG+CGG | 0.685156 | 3.3:-76500547 | None:intergenic |
| CAAATGCGAAAGGAAAGTGG+TGG | 0.689015 | 3.3:+76500810 | MS.gene06689:CDS |
| ATACCTGCGAGTTAACACTC+AGG | 0.734021 | 3.3:-76500699 | None:intergenic |
| AGCAACATGGATGAGTATGG+AGG | 0.751548 | 3.3:+76502490 | MS.gene06689:CDS |
| GTGGTGGACGAAGAATATGG+AGG | 0.759179 | 3.3:+76500826 | MS.gene06689:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATTTTAATTAAATAA+GGG | + | chr3.3:76501068-76501087 | MS.gene06689:intron | 0.0% |
| !!! | TTTTTAATTTTAATTAAATA+AGG | + | chr3.3:76501067-76501086 | MS.gene06689:intron | 0.0% |
| !!! | TTATTTTACGATTATTATTT+GGG | - | chr3.3:76500941-76500960 | None:intergenic | 10.0% |
| !!! | TTTATTTTACGATTATTATT+TGG | - | chr3.3:76500942-76500961 | None:intergenic | 10.0% |
| !!! | ATTTTAATTAAATAAGGGTT+AGG | + | chr3.3:76501073-76501092 | MS.gene06689:intron | 15.0% |
| !!! | TAATTCTAATATTCTAAAGT+TGG | + | chr3.3:76501216-76501235 | MS.gene06689:intron | 15.0% |
| !! | GACACAAATCAAATTTAATT+TGG | - | chr3.3:76502018-76502037 | None:intergenic | 20.0% |
| !! | TAAAACTCTTTCAAATAATG+AGG | - | chr3.3:76502616-76502635 | None:intergenic | 20.0% |
| ! | AAGAAAGATATGAACATTAC+AGG | - | chr3.3:76500584-76500603 | None:intergenic | 25.0% |
| ! | AAGTGTTATAGCTGTTAATT+TGG | - | chr3.3:76501363-76501382 | None:intergenic | 25.0% |
| ! | AATTTATACAAACAGGTAAG+AGG | - | chr3.3:76500917-76500936 | None:intergenic | 25.0% |
| ! | ATTACTCAAAACATGAAGAA+TGG | - | chr3.3:76502527-76502546 | None:intergenic | 25.0% |
| ! | ATTTATTGGATTGCATGTTA+CGG | + | chr3.3:76501280-76501299 | MS.gene06689:intron | 25.0% |
| ! | TTGATTGAATGAATGCATAA+TGG | + | chr3.3:76502186-76502205 | MS.gene06689:intron | 25.0% |
| ! | TTTGGGAAATTTATACAAAC+AGG | - | chr3.3:76500924-76500943 | None:intergenic | 25.0% |
| !! | CTTAAATATTCAAGTTCATC+GGG | - | chr3.3:76502266-76502285 | None:intergenic | 25.0% |
| !! | GCTTAAATATTCAAGTTCAT+CGG | - | chr3.3:76502267-76502286 | None:intergenic | 25.0% |
| !!! | AAATGTTTTGGGTTAAAATG+TGG | + | chr3.3:76501848-76501867 | MS.gene06689:intron | 25.0% |
| !!! | ATTCTAAAGTTGGAAAGTTA+GGG | + | chr3.3:76501226-76501245 | MS.gene06689:intron | 25.0% |
| !!! | TATTCTAAAGTTGGAAAGTT+AGG | + | chr3.3:76501225-76501244 | MS.gene06689:intron | 25.0% |
| !!! | TTGATTTTGAAGTAACAGTT+TGG | - | chr3.3:76500626-76500645 | None:intergenic | 25.0% |
| AAATGTGTTTGTAGTTCTCT+TGG | + | chr3.3:76501113-76501132 | MS.gene06689:intron | 30.0% | |
| AACCCAAAACATTTAGACAT+TGG | - | chr3.3:76501842-76501861 | None:intergenic | 30.0% | |
| AATGTGTTTGTAGTTCTCTT+GGG | + | chr3.3:76501114-76501133 | MS.gene06689:intron | 30.0% | |
| ACATTTAGACATTGGGTATA+TGG | - | chr3.3:76501834-76501853 | None:intergenic | 30.0% | |
| ACCCAAAACATTTAGACATT+GGG | - | chr3.3:76501841-76501860 | None:intergenic | 30.0% | |
| ATTCATTAAGGAACACGATA+AGG | + | chr3.3:76501592-76501611 | MS.gene06689:intron | 30.0% | |
| TCTAGTGATGTGATTCATTA+AGG | + | chr3.3:76501580-76501599 | MS.gene06689:intron | 30.0% | |
| TGAGACATATACCAGATATT+GGG | - | chr3.3:76502075-76502094 | None:intergenic | 30.0% | |
| TGATATCATGCAAAACAACA+GGG | - | chr3.3:76501720-76501739 | None:intergenic | 30.0% | |
| TTCATTAAGGAACACGATAA+GGG | + | chr3.3:76501593-76501612 | MS.gene06689:intron | 30.0% | |
| TTGCAAAAAATGCTTTCATG+TGG | + | chr3.3:76501982-76502001 | MS.gene06689:intron | 30.0% | |
| ! | ACCCAATGTCTAAATGTTTT+GGG | + | chr3.3:76501837-76501856 | MS.gene06689:intron | 30.0% |
| ! | AGTTTAAAACCTTTCCTTTC+CGG | - | chr3.3:76501194-76501213 | None:intergenic | 30.0% |
| ! | CATTTTGCTGCAGATAAAAA+AGG | + | chr3.3:76502294-76502313 | MS.gene06689:intron | 30.0% |
| ! | TACCCAATGTCTAAATGTTT+TGG | + | chr3.3:76501836-76501855 | MS.gene06689:intron | 30.0% |
| ! | TCCTTTTATATATCCTCTCT+TGG | - | chr3.3:76501655-76501674 | None:intergenic | 30.0% |
| !! | TTCTAAAGTTGGAAAGTTAG+GGG | + | chr3.3:76501227-76501246 | MS.gene06689:intron | 30.0% |
| AAAGTCGAAGAGAGAGTAAA+TGG | - | chr3.3:76500560-76500579 | None:intergenic | 35.0% | |
| AAGTCGAAGAGAGAGTAAAT+GGG | - | chr3.3:76500559-76500578 | None:intergenic | 35.0% | |
| ACATATACCAGATATTGGGA+CGG | - | chr3.3:76502071-76502090 | None:intergenic | 35.0% | |
| ACATTAGGCTCAATACAAAG+AGG | + | chr3.3:76501137-76501156 | MS.gene06689:intron | 35.0% | |
| ACATTGTGAGACAAGAAAGA+TGG | - | chr3.3:76500877-76500896 | None:intergenic | 35.0% | |
| ACTTTCTCAGTAGTTAGTAG+TGG | + | chr3.3:76501029-76501048 | MS.gene06689:intron | 35.0% | |
| ATGATTCATGCTATTGACAC+AGG | + | chr3.3:76502223-76502242 | MS.gene06689:intron | 35.0% | |
| CAGAAGATAGAATTAAGAGC+TGG | + | chr3.3:76500658-76500677 | MS.gene06689:intron | 35.0% | |
| CAGCAACTACAACAACATAA+AGG | - | chr3.3:76501787-76501806 | None:intergenic | 35.0% | |
| CGATCTGGATTATAGATTTG+TGG | + | chr3.3:76501333-76501352 | MS.gene06689:intron | 35.0% | |
| GCCAAGAGAGGATATATAAA+AGG | + | chr3.3:76501651-76501670 | MS.gene06689:intron | 35.0% | |
| GTCTTTGCTTCTTTCTATCA+TGG | + | chr3.3:76502035-76502054 | MS.gene06689:intron | 35.0% | |
| GTGAGACATATACCAGATAT+TGG | - | chr3.3:76502076-76502095 | None:intergenic | 35.0% | |
| GTGATATCATGCAAAACAAC+AGG | - | chr3.3:76501721-76501740 | None:intergenic | 35.0% | |
| TATGTTGTTGTAGTTGCTGT+TGG | + | chr3.3:76501788-76501807 | MS.gene06689:intron | 35.0% | |
| TGAATGCATAATGGTTATGC+TGG | + | chr3.3:76502195-76502214 | MS.gene06689:intron | 35.0% | |
| ! | TTTGTCGTGGATGGATTTAT+TGG | + | chr3.3:76501266-76501285 | MS.gene06689:intron | 35.0% |
| !! | ATTTTGATGCCATAGTGAAG+TGG | + | chr3.3:76502121-76502140 | MS.gene06689:intron | 35.0% |
| AACAACAGTTGGGTCATTAG+GGG | - | chr3.3:76501927-76501946 | None:intergenic | 40.0% | |
| AAGGAACACGATAAGGGAAA+AGG | + | chr3.3:76501599-76501618 | MS.gene06689:intron | 40.0% | |
| AATATGGAGGCGAAGGAAAA+TGG | + | chr3.3:76500839-76500858 | MS.gene06689:CDS | 40.0% | |
| AGAGGTTAAAGAGTTTGTCG+TGG | + | chr3.3:76501253-76501272 | MS.gene06689:intron | 40.0% | |
| AGTAATCGAGTGAATGATGC+CGG | + | chr3.3:76502541-76502560 | MS.gene06689:CDS | 40.0% | |
| AGTCTAGTGTGATCATTCCT+CGG | + | chr3.3:76501899-76501918 | MS.gene06689:intron | 40.0% | |
| ATCCAAATGCGAAAGGAAAG+TGG | + | chr3.3:76500807-76500826 | MS.gene06689:CDS | 40.0% | |
| ATGTGCATACCACTTCACTA+TGG | - | chr3.3:76502133-76502152 | None:intergenic | 40.0% | |
| CAACAACAGTTGGGTCATTA+GGG | - | chr3.3:76501928-76501947 | None:intergenic | 40.0% | |
| CAACATAAAGGTCACATGCA+TGG | - | chr3.3:76501775-76501794 | None:intergenic | 40.0% | |
| CATGCATTTGTTCTGCAAGA+TGG | + | chr3.3:76500782-76500801 | MS.gene06689:intron | 40.0% | |
| CTTTCCGGAAAATGAGCAAA+CGG | - | chr3.3:76501179-76501198 | None:intergenic | 40.0% | |
| GATGGTAATCCAAATGCGAA+AGG | + | chr3.3:76500800-76500819 | MS.gene06689:intron | 40.0% | |
| GTGAAACAGAATTAGCGATC+TGG | + | chr3.3:76501318-76501337 | MS.gene06689:intron | 40.0% | |
| GTGAGGAAGATAAAGGATGA+GGG | + | chr3.3:76502367-76502386 | MS.gene06689:CDS | 40.0% | |
| GTTAAAGAGTTTGTCGTGGA+TGG | + | chr3.3:76501257-76501276 | MS.gene06689:intron | 40.0% | |
| GTTCATATCGACAAACACCT+CGG | - | chr3.3:76501954-76501973 | None:intergenic | 40.0% | |
| TCTTGCAATTGGACATAGAG+AGG | + | chr3.3:76502395-76502414 | MS.gene06689:CDS | 40.0% | |
| TCTTTCAAATAATGAGGCCC+AGG | - | chr3.3:76502610-76502629 | None:intergenic | 40.0% | |
| TGAGGGAAAACTCTTGCAAT+TGG | + | chr3.3:76502384-76502403 | MS.gene06689:CDS | 40.0% | |
| TGATGCAAGGGATTATTGGA+AGG | + | chr3.3:76501392-76501411 | MS.gene06689:intron | 40.0% | |
| TGATTCTCTGCCCTACAAAA+TGG | + | chr3.3:76502318-76502337 | MS.gene06689:CDS | 40.0% | |
| TGTAGTTCTCTTGGGACATT+AGG | + | chr3.3:76501122-76501141 | MS.gene06689:intron | 40.0% | |
| TTTCCGGAAAATGAGCAAAC+GGG | - | chr3.3:76501178-76501197 | None:intergenic | 40.0% | |
| ! | AATTGCAATGTGTTGCTGCA+AGG | + | chr3.3:76501473-76501492 | MS.gene06689:intron | 40.0% |
| ! | ACTTGTGATGTGATGATGCA+AGG | + | chr3.3:76501379-76501398 | MS.gene06689:intron | 40.0% |
| ! | AGAGAGTAAATGGGTTTACG+CGG | - | chr3.3:76500550-76500569 | None:intergenic | 40.0% |
| ! | CTTGTGATGTGATGATGCAA+GGG | + | chr3.3:76501380-76501399 | MS.gene06689:intron | 40.0% |
| ! | GTGATGATGCAAGGGATTAT+TGG | + | chr3.3:76501388-76501407 | MS.gene06689:intron | 40.0% |
| !! | AAAGTGGTGGACGAAGAATA+TGG | + | chr3.3:76500823-76500842 | MS.gene06689:CDS | 40.0% |
| ACAACAGTTGGGTCATTAGG+GGG | - | chr3.3:76501926-76501945 | None:intergenic | 45.0% | |
| AGCAACATGGATGAGTATGG+AGG | + | chr3.3:76502490-76502509 | MS.gene06689:CDS | 45.0% | |
| AGGTTTGAAGGGATCAGACT+CGG | - | chr3.3:76502590-76502609 | None:intergenic | 45.0% | |
| AGTCTGATCCCTTCAAACCT+GGG | + | chr3.3:76502590-76502609 | MS.gene06689:CDS | 45.0% | |
| ATAATGAGGCCCAGGTTTGA+AGG | - | chr3.3:76502602-76502621 | None:intergenic | 45.0% | |
| ATACCTGCGAGTTAACACTC+AGG | - | chr3.3:76500702-76500721 | None:intergenic | 45.0% | |
| CAAATGCGAAAGGAAAGTGG+TGG | + | chr3.3:76500810-76500829 | MS.gene06689:CDS | 45.0% | |
| CACATATCCGTCCCAATATC+TGG | + | chr3.3:76502061-76502080 | MS.gene06689:intron | 45.0% | |
| CACCACTTTCCTTTCGCATT+TGG | - | chr3.3:76500812-76500831 | None:intergenic | 45.0% | |
| CATTGGGTATATGGATCCTC+TGG | - | chr3.3:76501825-76501844 | None:intergenic | 45.0% | |
| CGCTTATGTTGAGAGCAACA+TGG | + | chr3.3:76502477-76502496 | MS.gene06689:CDS | 45.0% | |
| GAGAGCAACATGGATGAGTA+TGG | + | chr3.3:76502487-76502506 | MS.gene06689:CDS | 45.0% | |
| GCAACAACAGTTGGGTCATT+AGG | - | chr3.3:76501929-76501948 | None:intergenic | 45.0% | |
| GGTGAGGAAGATAAAGGATG+AGG | + | chr3.3:76502366-76502385 | MS.gene06689:CDS | 45.0% | |
| GTTGCTCTCAACATAAGCGT+TGG | - | chr3.3:76502476-76502495 | None:intergenic | 45.0% | |
| TAATGAGGCCCAGGTTTGAA+GGG | - | chr3.3:76502601-76502620 | None:intergenic | 45.0% | |
| TGTGAATGAGATAGCAGCTG+AGG | + | chr3.3:76502450-76502469 | MS.gene06689:CDS | 45.0% | |
| TTCCGGAAAATGAGCAAACG+GGG | - | chr3.3:76501177-76501196 | None:intergenic | 45.0% | |
| TTGGAAAGTTAGGGGACTAG+AGG | + | chr3.3:76501235-76501254 | MS.gene06689:intron | 45.0% | |
| ! | AGGAATGCGCTCCATTTTGT+AGG | - | chr3.3:76502332-76502351 | None:intergenic | 45.0% |
| ! | CACAGGTTTTCACGAGTATC+AGG | + | chr3.3:76502240-76502259 | MS.gene06689:intron | 45.0% |
| ! | CGTTTGCTCATTTTCCGGAA+AGG | + | chr3.3:76501177-76501196 | MS.gene06689:intron | 45.0% |
| ! | GCTCATTTTCCGGAAAGGAA+AGG | + | chr3.3:76501182-76501201 | MS.gene06689:intron | 45.0% |
| ! | GGAATGCGCTCCATTTTGTA+GGG | - | chr3.3:76502331-76502350 | None:intergenic | 45.0% |
| AAGGGAAAAGGTAGCGTGAC+AGG | + | chr3.3:76501611-76501630 | MS.gene06689:intron | 50.0% | |
| ACCTCGGTAGCAACAACAGT+TGG | - | chr3.3:76501938-76501957 | None:intergenic | 50.0% | |
| AGGGAAAAGGTAGCGTGACA+GGG | + | chr3.3:76501612-76501631 | MS.gene06689:intron | 50.0% | |
| ATCCGCGAGAGAATGAAGCA+AGG | - | chr3.3:76501746-76501765 | None:intergenic | 50.0% | |
| CACCTTGCTTCATTCTCTCG+CGG | + | chr3.3:76501741-76501760 | MS.gene06689:intron | 50.0% | |
| CCTCGGTAGCAACAACAGTT+GGG | - | chr3.3:76501937-76501956 | None:intergenic | 50.0% | |
| GACGAAGAATATGGAGGCGA+AGG | + | chr3.3:76500832-76500851 | MS.gene06689:CDS | 50.0% | |
| GAGTCTGATCCCTTCAAACC+TGG | + | chr3.3:76502589-76502608 | MS.gene06689:CDS | 50.0% | |
| GGAGCAGGTGAGGAAGATAA+AGG | + | chr3.3:76502360-76502379 | MS.gene06689:CDS | 50.0% | |
| GTTGCTGCAAGGACGAACAT+AGG | + | chr3.3:76501484-76501503 | MS.gene06689:intron | 50.0% | |
| TCCGGAAAATGAGCAAACGG+GGG | - | chr3.3:76501176-76501195 | None:intergenic | 50.0% | |
| TGCATGTTACGGAAGTGAGC+TGG | + | chr3.3:76501291-76501310 | MS.gene06689:intron | 50.0% | |
| TGCGAGTTAACACTCAGGCT+CGG | - | chr3.3:76500697-76500716 | None:intergenic | 50.0% | |
| ! | CATTCCTTTTCTCGAGGAGC+AGG | + | chr3.3:76502345-76502364 | MS.gene06689:CDS | 50.0% |
| ! | GTTGGAGTATCAAGTGCCAG+AGG | + | chr3.3:76501806-76501825 | MS.gene06689:intron | 50.0% |
| ! | TCCCCCGTTTGCTCATTTTC+CGG | + | chr3.3:76501172-76501191 | MS.gene06689:intron | 50.0% |
| !! | GTGGTGGACGAAGAATATGG+AGG | + | chr3.3:76500826-76500845 | MS.gene06689:CDS | 50.0% |
| AGGAGGAGAAGAGCCAAGAG+AGG | + | chr3.3:76501639-76501658 | MS.gene06689:intron | 55.0% | |
| AGGTAGCGTGACAGGGAATG+AGG | + | chr3.3:76501619-76501638 | MS.gene06689:intron | 55.0% | |
| CCCAACTGTTGTTGCTACCG+AGG | + | chr3.3:76501934-76501953 | MS.gene06689:intron | 55.0% | |
| CGCCTCTGGACGGTAAAATC+CGG | - | chr3.3:76502563-76502582 | None:intergenic | 55.0% | |
| CGCGAGAGAATGAAGCAAGG+TGG | - | chr3.3:76501743-76501762 | None:intergenic | 55.0% | |
| CTCACCTGCTCCTCGAGAAA+AGG | - | chr3.3:76502352-76502371 | None:intergenic | 55.0% | |
| GAGCCTGAGTGTTAACTCGC+AGG | + | chr3.3:76500696-76500715 | MS.gene06689:CDS | 55.0% | |
| GCGAGTTAACACTCAGGCTC+GGG | - | chr3.3:76500696-76500715 | None:intergenic | 55.0% | |
| TAGCGTGACAGGGAATGAGG+AGG | + | chr3.3:76501622-76501641 | MS.gene06689:intron | 55.0% | |
| ! | CTTTTCTCGAGGAGCAGGTG+AGG | + | chr3.3:76502350-76502369 | MS.gene06689:CDS | 55.0% |
| ! | GGAGCGCATTCCTTTTCTCG+AGG | + | chr3.3:76502339-76502358 | MS.gene06689:CDS | 55.0% |
| ! | TGCCGGATTTTACCGTCCAG+AGG | + | chr3.3:76502558-76502577 | MS.gene06689:CDS | 55.0% |
| ACTCGGCATACGCCTCTGGA+CGG | - | chr3.3:76502573-76502592 | None:intergenic | 60.0% | |
| TCAGACTCGGCATACGCCTC+TGG | - | chr3.3:76502577-76502596 | None:intergenic | 60.0% | |
| TTGGGTCATTAGGGGGTCCG+AGG | - | chr3.3:76501919-76501938 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 76500539 | 76502642 | 76500539 | ID=MS.gene06689 |
| chr3.3 | mRNA | 76500539 | 76502642 | 76500539 | ID=MS.gene06689.t1;Parent=MS.gene06689 |
| chr3.3 | exon | 76500539 | 76500583 | 76500539 | ID=MS.gene06689.t1.exon1;Parent=MS.gene06689.t1 |
| chr3.3 | CDS | 76500539 | 76500583 | 76500539 | ID=cds.MS.gene06689.t1;Parent=MS.gene06689.t1 |
| chr3.3 | exon | 76500661 | 76500717 | 76500661 | ID=MS.gene06689.t1.exon2;Parent=MS.gene06689.t1 |
| chr3.3 | CDS | 76500661 | 76500717 | 76500661 | ID=cds.MS.gene06689.t1;Parent=MS.gene06689.t1 |
| chr3.3 | exon | 76500801 | 76500860 | 76500801 | ID=MS.gene06689.t1.exon3;Parent=MS.gene06689.t1 |
| chr3.3 | CDS | 76500801 | 76500860 | 76500801 | ID=cds.MS.gene06689.t1;Parent=MS.gene06689.t1 |
| chr3.3 | exon | 76502307 | 76502642 | 76502307 | ID=MS.gene06689.t1.exon4;Parent=MS.gene06689.t1 |
| chr3.3 | CDS | 76502307 | 76502642 | 76502307 | ID=cds.MS.gene06689.t1;Parent=MS.gene06689.t1 |
| Gene Sequence |
| Protein sequence |
