Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066929.t1 | XP_013445262.1 | 78 | 436 | 71 | 1 | 1 | 436 | 1 | 411 | 5.20E-74 | 288.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066929.t1 | D9UC01 | 35.6 | 104 | 67 | 0 | 24 | 127 | 16 | 119 | 4.0e-14 | 80.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066929.t1 | A0A072TR16 | 78.0 | 436 | 71 | 1 | 1 | 436 | 1 | 411 | 3.7e-74 | 288.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049698 | MS.gene066929 | 0.840028 | 1.11E-57 | -1.69E-46 |
| MS.gene05150 | MS.gene066929 | 0.81012 | 1.35E-50 | -1.69E-46 |
| MS.gene051720 | MS.gene066929 | 0.802454 | 5.57E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene066929 | 0.817152 | 3.83E-52 | -1.69E-46 |
| MS.gene053536 | MS.gene066929 | 0.814151 | 1.78E-51 | -1.69E-46 |
| MS.gene053538 | MS.gene066929 | 0.802513 | 5.41E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene066929 | 0.81849 | 1.91E-52 | -1.69E-46 |
| MS.gene055144 | MS.gene066929 | 0.821599 | 3.71E-53 | -1.69E-46 |
| MS.gene055537 | MS.gene066929 | 0.82718 | 1.80E-54 | -1.69E-46 |
| MS.gene057082 | MS.gene066929 | 0.802231 | 6.19E-49 | -1.69E-46 |
| MS.gene058339 | MS.gene066929 | 0.82159 | 3.72E-53 | -1.69E-46 |
| MS.gene058351 | MS.gene066929 | 0.800892 | 1.16E-48 | -1.69E-46 |
| MS.gene058909 | MS.gene066929 | 0.837793 | 4.21E-57 | -1.69E-46 |
| MS.gene058912 | MS.gene066929 | 0.838323 | 3.08E-57 | -1.69E-46 |
| MS.gene05894 | MS.gene066929 | 0.824433 | 8.09E-54 | -1.69E-46 |
| MS.gene059424 | MS.gene066929 | 0.810336 | 1.21E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066929.t1 | MTR_8g046245 | 86.986 | 438 | 28 | 3 | 1 | 436 | 1 | 411 | 0.0 | 717 |
| MS.gene066929.t1 | MTR_3g007660 | 34.105 | 475 | 201 | 20 | 1 | 436 | 1 | 402 | 1.08e-47 | 169 |
| MS.gene066929.t1 | MTR_5g087480 | 34.266 | 143 | 86 | 5 | 15 | 153 | 4 | 142 | 1.30e-13 | 71.6 |
| MS.gene066929.t1 | MTR_5g087450 | 35.417 | 96 | 61 | 1 | 22 | 117 | 12 | 106 | 4.49e-13 | 69.3 |
| MS.gene066929.t1 | MTR_3g007480 | 26.793 | 474 | 264 | 24 | 24 | 436 | 9 | 460 | 6.79e-13 | 70.5 |
| MS.gene066929.t1 | MTR_5g087480 | 29.064 | 203 | 132 | 6 | 15 | 208 | 4 | 203 | 7.00e-13 | 70.1 |
| MS.gene066929.t1 | MTR_5g087470 | 33.333 | 117 | 71 | 2 | 15 | 125 | 4 | 119 | 6.57e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066929.t1 | AT5G04890 | 37.113 | 97 | 61 | 0 | 24 | 120 | 16 | 112 | 4.30e-17 | 82.8 |
| MS.gene066929.t1 | AT2G27140 | 38.889 | 90 | 54 | 1 | 22 | 111 | 12 | 100 | 1.25e-16 | 79.3 |
| MS.gene066929.t1 | AT5G20970 | 36.458 | 96 | 60 | 1 | 16 | 111 | 2 | 96 | 1.58e-13 | 70.5 |
Find 63 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTCATGTTTATCTTCC+TGG | 0.169791 | 8.4:-55033752 | MS.gene066929:intron |
| GAGAGTTCCTTGTTCAAATT+TGG | 0.170610 | 8.4:+55033346 | None:intergenic |
| CATTTAGAGCACCAACTTTC+CGG | 0.225720 | 8.4:-55033850 | MS.gene066929:CDS |
| TCCATTCTTCCCTTCTTGAT+TGG | 0.243777 | 8.4:+55032506 | None:intergenic |
| GTTCTAGTTATTGCTGCATT+TGG | 0.274465 | 8.4:-55032381 | MS.gene066929:CDS |
| CCATTCTTCCCTTCTTGATT+GGG | 0.284831 | 8.4:+55032507 | None:intergenic |
| TCATTGCTAATTGTTTCTTT+AGG | 0.292280 | 8.4:+55033077 | None:intergenic |
| TCAAAATGGTAAAGAGGATT+TGG | 0.306061 | 8.4:-55032844 | MS.gene066929:CDS |
| TCACGAAAGTTGAGGGTTAC+AGG | 0.325893 | 8.4:-55033455 | MS.gene066929:CDS |
| GTGTCTATGGATGTTGGTTT+TGG | 0.330660 | 8.4:+55033020 | None:intergenic |
| CATTATAGTTCTCCCTTAAG+AGG | 0.334811 | 8.4:+55032335 | None:intergenic |
| CTCCATTTGTTAACTGGAAT+CGG | 0.348473 | 8.4:+55033425 | None:intergenic |
| TCTAAATCTTTATTATTTGA+AGG | 0.357574 | 8.4:+55033251 | None:intergenic |
| AACAAATGAAAAGGCTCAAA+AGG | 0.366924 | 8.4:-55032784 | MS.gene066929:CDS |
| TTTCAGGAACAGGATATGTT+TGG | 0.383776 | 8.4:+55033393 | None:intergenic |
| TTGGAGCCTATGTGTCATAT+TGG | 0.385338 | 8.4:-55032362 | MS.gene066929:CDS |
| TGATTCTTGCTTGACTCATA+AGG | 0.387472 | 8.4:+55032618 | None:intergenic |
| GGTTACCAAAGAAAATTTAG+AGG | 0.391549 | 8.4:-55032724 | MS.gene066929:CDS |
| TCAAATGAAGATTGAGTTGC+TGG | 0.398349 | 8.4:-55033483 | MS.gene066929:CDS |
| ATAGATGAAAAGCCTCAAAA+TGG | 0.404493 | 8.4:-55032858 | MS.gene066929:CDS |
| AATTTAGAGGAAAAGATAGT+AGG | 0.419722 | 8.4:-55032711 | MS.gene066929:CDS |
| AATAGATGAAAAGCCTCAAA+AGG | 0.421979 | 8.4:-55032985 | MS.gene066929:CDS |
| AATTTGCTGCTACTTCTTCT+CGG | 0.423071 | 8.4:-55032476 | MS.gene066929:CDS |
| ACATGAAGAAGGTAAGCTTC+AGG | 0.423364 | 8.4:+55033764 | None:intergenic |
| ACTTGTGATGATTGTGAAGT+TGG | 0.436730 | 8.4:+55033302 | None:intergenic |
| GTTTCTTTCATCTCTGATAG+AGG | 0.440166 | 8.4:+55033788 | None:intergenic |
| CAATGACAATAACCCTCAAA+AGG | 0.440997 | 8.4:-55033060 | MS.gene066929:CDS |
| TTGGTTCTCTCTATGGATGT+TGG | 0.448014 | 8.4:+55032888 | None:intergenic |
| GACCGATTCCAGTTAACAAA+TGG | 0.451924 | 8.4:-55033427 | MS.gene066929:CDS |
| GCCTCAAAATGGTCAAGTAT+TGG | 0.452760 | 8.4:-55032919 | MS.gene066929:CDS |
| ATAGATGAAAAGCCTCAAAA+TGG | 0.459211 | 8.4:-55032930 | MS.gene066929:CDS |
| CCCAATCAAGAAGGGAAGAA+TGG | 0.459931 | 8.4:-55032507 | MS.gene066929:CDS |
| TTGGTTCTCTCTGTGGATGT+TGG | 0.461455 | 8.4:+55032813 | None:intergenic |
| CTGAAGATGCTGAGAAAGAA+AGG | 0.464414 | 8.4:-55032680 | MS.gene066929:CDS |
| TTCTTCCCTTCTTGATTGGG+AGG | 0.466684 | 8.4:+55032510 | None:intergenic |
| TTGGTTGTGTCTATGGATGT+TGG | 0.475530 | 8.4:+55033014 | None:intergenic |
| TGCTCCAAATGTTCCAGAGA+AGG | 0.484905 | 8.4:-55032556 | MS.gene066929:CDS |
| CAAAACACAAACAAATGAAA+AGG | 0.491199 | 8.4:-55032793 | MS.gene066929:CDS |
| TCAATGCTTTGAGAAGTTTG+AGG | 0.520952 | 8.4:+55033140 | None:intergenic |
| AAATGTTCCAGAGAAGGAAA+AGG | 0.521289 | 8.4:-55032550 | MS.gene066929:CDS |
| GAAAGTTGCGACCGGAAAGT+TGG | 0.529825 | 8.4:+55033839 | None:intergenic |
| CAGGAAGATAAACATGAAGA+AGG | 0.535239 | 8.4:+55033753 | None:intergenic |
| AATGACAATAACCCTCAAAA+GGG | 0.540210 | 8.4:-55033059 | MS.gene066929:CDS |
| GAAAGAAAGGAACTCAAAGA+AGG | 0.547668 | 8.4:-55032667 | MS.gene066929:CDS |
| ACAAATGAAAAGGCTCAAAA+GGG | 0.550919 | 8.4:-55032783 | MS.gene066929:CDS |
| AAAGCCTCAAAATGGTAAAG+AGG | 0.553368 | 8.4:-55032850 | MS.gene066929:CDS |
| GGACATGTCACGAAAGTTGA+GGG | 0.556517 | 8.4:-55033462 | MS.gene066929:CDS |
| TAAAGATTTAGATGAAGCAA+AGG | 0.558689 | 8.4:-55033240 | MS.gene066929:CDS |
| AGAATTCCTCCCAATCAAGA+AGG | 0.561804 | 8.4:-55032516 | MS.gene066929:CDS |
| AGACATTTAGCTGAAAATGT+AGG | 0.570668 | 8.4:-55032411 | MS.gene066929:CDS |
| GGAAAACCAATATGACACAT+AGG | 0.573601 | 8.4:+55032356 | None:intergenic |
| CTTGAAGCCAAATTTGAACA+AGG | 0.579441 | 8.4:-55033353 | MS.gene066929:CDS |
| TGGACATGTCACGAAAGTTG+AGG | 0.582103 | 8.4:-55033463 | MS.gene066929:CDS |
| AGAAAGGAACTCAAAGAAGG+AGG | 0.597966 | 8.4:-55032664 | MS.gene066929:CDS |
| ATAGATGAAAAGCCTCAAAA+GGG | 0.602281 | 8.4:-55032984 | MS.gene066929:CDS |
| GACGAACTGAAAGTTGCGAC+CGG | 0.608677 | 8.4:+55033831 | None:intergenic |
| GTTTCTTTAGGAATTTGAGA+TGG | 0.609368 | 8.4:+55033089 | None:intergenic |
| GAATTCCTCCCAATCAAGAA+GGG | 0.614961 | 8.4:-55032515 | MS.gene066929:CDS |
| TTTGTGACAAGAATTGCTGA+AGG | 0.617408 | 8.4:-55032453 | MS.gene066929:CDS |
| AAAGGCTCAAAAGGGTGAAG+AGG | 0.622355 | 8.4:-55032775 | MS.gene066929:CDS |
| TTGTGACAAGAATTGCTGAA+GGG | 0.639092 | 8.4:-55032452 | MS.gene066929:CDS |
| TCCTGTTCCTGAAAATAGTG+TGG | 0.644311 | 8.4:-55033384 | MS.gene066929:CDS |
| ATTGCTGAAGGGAAATTGAG+TGG | 0.731467 | 8.4:-55032441 | MS.gene066929:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTAAATCTTTATTATTTGA+AGG | + | chr8.4:55032974-55032993 | None:intergenic | 15.0% |
| !! | TATCATATGAATTGTACTTA+CGG | + | chr8.4:55032531-55032550 | None:intergenic | 20.0% |
| !!! | TATTTCTGTTTTGATTTTGT+AGG | - | chr8.4:55032704-55032723 | MS.gene066929:CDS | 20.0% |
| !!! | TCAAAACAGAAATATAGTTT+TGG | + | chr8.4:55032698-55032717 | None:intergenic | 20.0% |
| ! | AAAGTCAAAATTTGTGTGTA+TGG | - | chr8.4:55032655-55032674 | MS.gene066929:CDS | 25.0% |
| ! | AATTTAGAGGAAAAGATAGT+AGG | - | chr8.4:55033511-55033530 | MS.gene066929:intron | 25.0% |
| ! | CAAAACACAAACAAATGAAA+AGG | - | chr8.4:55033429-55033448 | MS.gene066929:CDS | 25.0% |
| ! | TAAAGATTTAGATGAAGCAA+AGG | - | chr8.4:55032982-55033001 | MS.gene066929:CDS | 25.0% |
| !! | ACCAATTTCTCTATTGTTTT+TGG | + | chr8.4:55033481-55033500 | None:intergenic | 25.0% |
| !! | CTTTTCATCTATTTGTGTTT+TGG | + | chr8.4:55033356-55033375 | None:intergenic | 25.0% |
| !! | CTTTTCATTTGTTTGTGTTT+TGG | + | chr8.4:55033431-55033450 | None:intergenic | 25.0% |
| !! | CTTTTCCTCTAAATTTTCTT+TGG | + | chr8.4:55033506-55033525 | None:intergenic | 25.0% |
| !! | TCATTGCTAATTGTTTCTTT+AGG | + | chr8.4:55033148-55033167 | None:intergenic | 25.0% |
| !! | TGATTTTGTAGGTTTTACAA+AGG | - | chr8.4:55032715-55032734 | MS.gene066929:CDS | 25.0% |
| !!! | AATTTTCTCCATTTGTTAAC+TGG | + | chr8.4:55032806-55032825 | None:intergenic | 25.0% |
| !!! | CTTTTCATCTATTTGCTTTT+TGG | + | chr8.4:55033230-55033249 | None:intergenic | 25.0% |
| !!! | TTTTGGTTTGATTATATAGC+AGG | + | chr8.4:55032681-55032700 | None:intergenic | 25.0% |
| AACAAATGAAAAGGCTCAAA+AGG | - | chr8.4:55033438-55033457 | MS.gene066929:CDS | 30.0% | |
| AATAGATGAAAAGCCTCAAA+AGG | - | chr8.4:55033237-55033256 | MS.gene066929:CDS | 30.0% | |
| AATGACAATAACCCTCAAAA+GGG | - | chr8.4:55033163-55033182 | MS.gene066929:CDS | 30.0% | |
| ACAAATGAAAAGGCTCAAAA+GGG | - | chr8.4:55033439-55033458 | MS.gene066929:CDS | 30.0% | |
| AGACATTTAGCTGAAAATGT+AGG | - | chr8.4:55033811-55033830 | MS.gene066929:CDS | 30.0% | |
| ATAGATGAAAAGCCTCAAAA+GGG | - | chr8.4:55033238-55033257 | MS.gene066929:CDS | 30.0% | |
| ATAGATGAAAAGCCTCAAAA+TGG | - | chr8.4:55033238-55033257 | MS.gene066929:CDS | 30.0% | |
| GCCAAAAACAATAGAGAAAT+TGG | - | chr8.4:55033477-55033496 | MS.gene066929:CDS | 30.0% | |
| GGTTACCAAAGAAAATTTAG+AGG | - | chr8.4:55033498-55033517 | MS.gene066929:CDS | 30.0% | |
| TCAAAATGGTAAAGAGGATT+TGG | - | chr8.4:55033378-55033397 | MS.gene066929:CDS | 30.0% | |
| ! | AAATCCTCTTTACCATTTTG+AGG | + | chr8.4:55033379-55033398 | None:intergenic | 30.0% |
| ! | GTTTCTTTAGGAATTTGAGA+TGG | + | chr8.4:55033136-55033155 | None:intergenic | 30.0% |
| !! | ATGCCTTTAACTTGTTTACA+TGG | - | chr8.4:55032496-55032515 | MS.gene066929:CDS | 30.0% |
| !! | GTTGATTCTTCCAATTTTTG+TGG | + | chr8.4:55033040-55033059 | None:intergenic | 30.0% |
| !!! | CTTTTTTCTACTTCTTGTTG+AGG | + | chr8.4:55032950-55032969 | None:intergenic | 30.0% |
| AAAGCCTCAAAATGGTAAAG+AGG | - | chr8.4:55033372-55033391 | MS.gene066929:CDS | 35.0% | |
| AAATGTTCCAGAGAAGGAAA+AGG | - | chr8.4:55033672-55033691 | MS.gene066929:intron | 35.0% | |
| ACTTGTGATGATTGTGAAGT+TGG | + | chr8.4:55032923-55032942 | None:intergenic | 35.0% | |
| CAATGACAATAACCCTCAAA+AGG | - | chr8.4:55033162-55033181 | MS.gene066929:CDS | 35.0% | |
| CAGGAAGATAAACATGAAGA+AGG | + | chr8.4:55032472-55032491 | None:intergenic | 35.0% | |
| CGACCATGTAAACAAGTTAA+AGG | + | chr8.4:55032502-55032521 | None:intergenic | 35.0% | |
| CTTCTTCATGTTTATCTTCC+TGG | - | chr8.4:55032470-55032489 | MS.gene066929:CDS | 35.0% | |
| CTTGAAGCCAAATTTGAACA+AGG | - | chr8.4:55032869-55032888 | MS.gene066929:CDS | 35.0% | |
| GAAAGAAAGGAACTCAAAGA+AGG | - | chr8.4:55033555-55033574 | MS.gene066929:intron | 35.0% | |
| GAGAGTTCCTTGTTCAAATT+TGG | + | chr8.4:55032879-55032898 | None:intergenic | 35.0% | |
| GGAAAACCAATATGACACAT+AGG | + | chr8.4:55033869-55033888 | None:intergenic | 35.0% | |
| GTTTCTTTCATCTCTGATAG+AGG | + | chr8.4:55032437-55032456 | None:intergenic | 35.0% | |
| TATTCCACCACCACAAAAAT+TGG | - | chr8.4:55033027-55033046 | MS.gene066929:CDS | 35.0% | |
| TGATTCTTGCTTGACTCATA+AGG | + | chr8.4:55033607-55033626 | None:intergenic | 35.0% | |
| TTGTGACAAGAATTGCTGAA+GGG | - | chr8.4:55033770-55033789 | MS.gene066929:CDS | 35.0% | |
| TTTCAGGAACAGGATATGTT+TGG | + | chr8.4:55032832-55032851 | None:intergenic | 35.0% | |
| TTTGTGACAAGAATTGCTGA+AGG | - | chr8.4:55033769-55033788 | MS.gene066929:CDS | 35.0% | |
| ! | AATTCTTCTTGACCCTTTTG+AGG | + | chr8.4:55033253-55033272 | None:intergenic | 35.0% |
| ! | AATTCTTGTTGACCCTTTTG+AGG | + | chr8.4:55033178-55033197 | None:intergenic | 35.0% |
| ! | ACAAGTTAAAGGCATATACC+AGG | + | chr8.4:55032491-55032510 | None:intergenic | 35.0% |
| ! | ATTCTTGTTGACCCTTTTGA+GGG | + | chr8.4:55033177-55033196 | None:intergenic | 35.0% |
| ! | CTCCATTTGTTAACTGGAAT+CGG | + | chr8.4:55032800-55032819 | None:intergenic | 35.0% |
| ! | GATTCTTCCAATTTTTGTGG+TGG | + | chr8.4:55033037-55033056 | None:intergenic | 35.0% |
| ! | GGCTTTTCATCTATTGATGT+TGG | + | chr8.4:55033286-55033305 | None:intergenic | 35.0% |
| ! | GTTCTAGTTATTGCTGCATT+TGG | - | chr8.4:55033841-55033860 | MS.gene066929:CDS | 35.0% |
| ! | TCAAATGAAGATTGAGTTGC+TGG | - | chr8.4:55032739-55032758 | MS.gene066929:CDS | 35.0% |
| ! | TCCAATACTTGACCATTTTG+AGG | + | chr8.4:55033307-55033326 | None:intergenic | 35.0% |
| !! | AATTTGCTGCTACTTCTTCT+CGG | - | chr8.4:55033746-55033765 | MS.gene066929:intron | 35.0% |
| !! | TCAATGCTTTGAGAAGTTTG+AGG | + | chr8.4:55033085-55033104 | None:intergenic | 35.0% |
| !!! | TTGCTTTTTGGTTGTGTCTA+TGG | + | chr8.4:55033218-55033237 | None:intergenic | 35.0% |
| !!! | TTGTGTTTTGGTTCTCTCTA+TGG | + | chr8.4:55033344-55033363 | None:intergenic | 35.0% |
| !!! | TTTTCCTTCTCTGGAACATT+TGG | + | chr8.4:55033673-55033692 | None:intergenic | 35.0% |
| !!! | TTTTTGTGGTGGTGGAATAT+TGG | + | chr8.4:55033026-55033045 | None:intergenic | 35.0% |
| ACATGAAGAAGGTAAGCTTC+AGG | + | chr8.4:55032461-55032480 | None:intergenic | 40.0% | |
| AGAAAGGAACTCAAAGAAGG+AGG | - | chr8.4:55033558-55033577 | MS.gene066929:intron | 40.0% | |
| AGAATTCCTCCCAATCAAGA+AGG | - | chr8.4:55033706-55033725 | MS.gene066929:intron | 40.0% | |
| ATTGCTGAAGGGAAATTGAG+TGG | - | chr8.4:55033781-55033800 | MS.gene066929:CDS | 40.0% | |
| CCATTCTTCCCTTCTTGATT+GGG | + | chr8.4:55033718-55033737 | None:intergenic | 40.0% | |
| CTGAAGATGCTGAGAAAGAA+AGG | - | chr8.4:55033542-55033561 | MS.gene066929:intron | 40.0% | |
| GAATTCCTCCCAATCAAGAA+GGG | - | chr8.4:55033707-55033726 | MS.gene066929:intron | 40.0% | |
| GCCTCAAAATGGTCAAGTAT+TGG | - | chr8.4:55033303-55033322 | MS.gene066929:CDS | 40.0% | |
| TCCATTCTTCCCTTCTTGAT+TGG | + | chr8.4:55033719-55033738 | None:intergenic | 40.0% | |
| TCCTGTTCCTGAAAATAGTG+TGG | - | chr8.4:55032838-55032857 | MS.gene066929:CDS | 40.0% | |
| TTGGAGCCTATGTGTCATAT+TGG | - | chr8.4:55033860-55033879 | MS.gene066929:CDS | 40.0% | |
| TTGGTTGTGTCTATGGATGT+TGG | + | chr8.4:55033211-55033230 | None:intergenic | 40.0% | |
| ! | CATTTAGAGCACCAACTTTC+CGG | - | chr8.4:55032372-55032391 | MS.gene066929:CDS | 40.0% |
| ! | GACCGATTCCAGTTAACAAA+TGG | - | chr8.4:55032795-55032814 | MS.gene066929:CDS | 40.0% |
| ! | TCTTCCAATTTTTGTGGTGG+TGG | + | chr8.4:55033034-55033053 | None:intergenic | 40.0% |
| ! | TTCTCTGCCACACTATTTTC+AGG | + | chr8.4:55032848-55032867 | None:intergenic | 40.0% |
| ! | TTGGTTCTCTCTATGGATGT+TGG | + | chr8.4:55033337-55033356 | None:intergenic | 40.0% |
| !! | ACAATGACAAAGTTGATGCG+AGG | + | chr8.4:55032602-55032621 | None:intergenic | 40.0% |
| !!! | GTGTCTATGGATGTTGGTTT+TGG | + | chr8.4:55033205-55033224 | None:intergenic | 40.0% |
| !!! | TTGTGTTTTGGTTCTCTCTG+TGG | + | chr8.4:55033419-55033438 | None:intergenic | 40.0% |
| AAAGGCTCAAAAGGGTGAAG+AGG | - | chr8.4:55033447-55033466 | MS.gene066929:CDS | 45.0% | |
| CCCAATCAAGAAGGGAAGAA+TGG | - | chr8.4:55033715-55033734 | MS.gene066929:intron | 45.0% | |
| GGACATGTCACGAAAGTTGA+GGG | - | chr8.4:55032760-55032779 | MS.gene066929:CDS | 45.0% | |
| TCACGAAAGTTGAGGGTTAC+AGG | - | chr8.4:55032767-55032786 | MS.gene066929:CDS | 45.0% | |
| TGCTCCAAATGTTCCAGAGA+AGG | - | chr8.4:55033666-55033685 | MS.gene066929:intron | 45.0% | |
| TGGACATGTCACGAAAGTTG+AGG | - | chr8.4:55032759-55032778 | MS.gene066929:CDS | 45.0% | |
| TTCTTCCCTTCTTGATTGGG+AGG | + | chr8.4:55033715-55033734 | None:intergenic | 45.0% | |
| ! | CAAGCTTCCTTTTCCTTCTC+TGG | + | chr8.4:55033682-55033701 | None:intergenic | 45.0% |
| ! | TTGGTTCTCTCTGTGGATGT+TGG | + | chr8.4:55033412-55033431 | None:intergenic | 45.0% |
| !! | GCCACACTATTTTCAGGAAC+AGG | + | chr8.4:55032842-55032861 | None:intergenic | 45.0% |
| GAAAGTTGCGACCGGAAAGT+TGG | + | chr8.4:55032386-55032405 | None:intergenic | 50.0% | |
| GACGAACTGAAAGTTGCGAC+CGG | + | chr8.4:55032394-55032413 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 55032350 | 55033894 | 55032350 | ID=MS.gene066929 |
| chr8.4 | mRNA | 55032350 | 55033894 | 55032350 | ID=MS.gene066929.t1;Parent=MS.gene066929 |
| chr8.4 | exon | 55033753 | 55033894 | 55033753 | ID=MS.gene066929.t1.exon1;Parent=MS.gene066929.t1 |
| chr8.4 | CDS | 55033753 | 55033894 | 55033753 | ID=cds.MS.gene066929.t1;Parent=MS.gene066929.t1 |
| chr8.4 | exon | 55032350 | 55033518 | 55032350 | ID=MS.gene066929.t1.exon2;Parent=MS.gene066929.t1 |
| chr8.4 | CDS | 55032350 | 55033518 | 55032350 | ID=cds.MS.gene066929.t1;Parent=MS.gene066929.t1 |
| Gene Sequence |
| Protein sequence |
