Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06744.t1 | XP_003602205.1 | 98.5 | 199 | 3 | 0 | 1 | 199 | 1 | 199 | 1.50E-108 | 402.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06744.t1 | Q9FGM1 | 79.3 | 184 | 34 | 1 | 8 | 187 | 2 | 185 | 9.4e-80 | 297.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06744.t1 | G7J6S4 | 98.5 | 199 | 3 | 0 | 1 | 199 | 1 | 199 | 1.1e-108 | 402.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050384 | MS.gene06744 | 0.821872 | 3.20E-53 | -1.69E-46 |
| MS.gene050386 | MS.gene06744 | 0.828925 | 6.85E-55 | -1.69E-46 |
| MS.gene057108 | MS.gene06744 | 0.990072 | 6.28E-181 | -1.69E-46 |
| MS.gene057109 | MS.gene06744 | 0.991184 | 2.54E-186 | -1.69E-46 |
| MS.gene057110 | MS.gene06744 | 0.994431 | 3.41E-207 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene86009 | MS.gene06744 | PPI |
| MS.gene59569 | MS.gene06744 | PPI |
| MS.gene95282 | MS.gene06744 | PPI |
| MS.gene79764 | MS.gene06744 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06744.t1 | MTR_3g090980 | 98.492 | 199 | 3 | 0 | 1 | 199 | 1 | 199 | 1.96e-147 | 407 |
| MS.gene06744.t1 | MTR_1g028380 | 86.842 | 190 | 24 | 1 | 4 | 192 | 1 | 190 | 1.21e-122 | 344 |
| MS.gene06744.t1 | MTR_8g027805 | 75.269 | 186 | 45 | 1 | 5 | 190 | 3 | 187 | 3.15e-103 | 295 |
| MS.gene06744.t1 | MTR_3g071740 | 53.012 | 166 | 73 | 4 | 15 | 178 | 60 | 222 | 6.25e-59 | 184 |
| MS.gene06744.t1 | MTR_5g083270 | 52.147 | 163 | 72 | 3 | 19 | 178 | 44 | 203 | 9.05e-57 | 178 |
| MS.gene06744.t1 | MTR_7g070050 | 55.491 | 173 | 71 | 3 | 15 | 181 | 7 | 179 | 1.61e-55 | 174 |
| MS.gene06744.t1 | MTR_4g014460 | 45.455 | 176 | 91 | 2 | 8 | 178 | 32 | 207 | 6.86e-53 | 169 |
| MS.gene06744.t1 | MTR_1g016480 | 46.471 | 170 | 82 | 3 | 16 | 177 | 28 | 196 | 1.42e-52 | 167 |
| MS.gene06744.t1 | MTR_5g030500 | 48.795 | 166 | 78 | 3 | 20 | 179 | 43 | 207 | 1.08e-49 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06744.t1 | AT5G53160 | 79.348 | 184 | 34 | 1 | 8 | 187 | 2 | 185 | 2.20e-105 | 301 |
| MS.gene06744.t1 | AT1G01360 | 74.317 | 183 | 45 | 1 | 5 | 187 | 7 | 187 | 2.18e-98 | 283 |
| MS.gene06744.t1 | AT4G27920 | 71.591 | 176 | 45 | 2 | 4 | 178 | 1 | 172 | 2.49e-92 | 268 |
| MS.gene06744.t1 | AT4G01026 | 69.945 | 183 | 53 | 1 | 7 | 189 | 11 | 191 | 4.65e-90 | 263 |
| MS.gene06744.t1 | AT5G53160 | 75.214 | 117 | 25 | 1 | 8 | 120 | 2 | 118 | 5.66e-60 | 185 |
| MS.gene06744.t1 | AT2G40330 | 48.171 | 164 | 81 | 2 | 19 | 178 | 46 | 209 | 3.39e-53 | 169 |
| MS.gene06744.t1 | AT5G05440 | 50.633 | 158 | 73 | 3 | 19 | 174 | 43 | 197 | 3.89e-53 | 169 |
| MS.gene06744.t1 | AT2G38310 | 53.374 | 163 | 71 | 2 | 23 | 183 | 41 | 200 | 4.16e-53 | 169 |
| MS.gene06744.t1 | AT2G26040 | 45.238 | 168 | 87 | 3 | 21 | 184 | 22 | 188 | 4.45e-51 | 163 |
| MS.gene06744.t1 | AT4G17870 | 47.853 | 163 | 83 | 1 | 21 | 181 | 17 | 179 | 4.02e-48 | 155 |
| MS.gene06744.t1 | AT1G73000 | 41.176 | 170 | 89 | 2 | 21 | 179 | 37 | 206 | 1.25e-43 | 145 |
| MS.gene06744.t1 | AT5G45870 | 51.007 | 149 | 70 | 2 | 31 | 178 | 7 | 153 | 9.28e-40 | 133 |
| MS.gene06744.t1 | AT5G46790 | 46.341 | 164 | 83 | 2 | 21 | 179 | 44 | 207 | 1.12e-39 | 135 |
| MS.gene06744.t1 | AT5G46790 | 46.341 | 164 | 83 | 2 | 21 | 179 | 44 | 207 | 1.12e-39 | 135 |
| MS.gene06744.t1 | AT5G45860 | 49.383 | 162 | 73 | 3 | 18 | 178 | 1 | 154 | 1.08e-38 | 130 |
| MS.gene06744.t1 | AT4G18620 | 44.025 | 159 | 82 | 1 | 27 | 178 | 2 | 160 | 1.88e-35 | 122 |
Find 57 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCTTCCATCAATAATTTC+TGG | 0.156182 | 3.2:+76875528 | None:intergenic |
| CTTTCTCTAGGTATGGTCTT+TGG | 0.253746 | 3.2:-76877577 | MS.gene06744:intron |
| TTTGAGATTGCACTTAATTA+AGG | 0.261510 | 3.2:+76875425 | None:intergenic |
| ATTCTAAGCATCAGGATTAT+TGG | 0.270575 | 3.2:-76877393 | MS.gene06744:CDS |
| GTCTTCCATCAATAATTTCT+GGG | 0.334881 | 3.2:+76875529 | None:intergenic |
| GATTCAATTACCAGCGTTCC+TGG | 0.351242 | 3.2:+76875507 | None:intergenic |
| GGATTATTGGTGGTGATCAT+AGG | 0.376992 | 3.2:-76877380 | MS.gene06744:CDS |
| CTCGGAAGGGCATGCTGTGC+AGG | 0.389173 | 3.2:-76875388 | MS.gene06744:CDS |
| AGAGAAGTTGATGTTAAGTC+AGG | 0.400572 | 3.2:-76877471 | MS.gene06744:CDS |
| CTCCACCCAGAAATTATTGA+TGG | 0.415182 | 3.2:-76875534 | MS.gene06744:CDS |
| AGATTGATTACAAGAGGAAC+AGG | 0.418165 | 3.2:+76878235 | None:intergenic |
| TTGGTGGTGATCATAGGCTT+AGG | 0.430017 | 3.2:-76877374 | MS.gene06744:CDS |
| GTGAGGGGAAACCTTGAGAT+TGG | 0.441356 | 3.2:-76877501 | MS.gene06744:CDS |
| TCATCCTTGGTATTCCCCTC+TGG | 0.450075 | 3.2:+76875468 | None:intergenic |
| ATGAGCATATTCTAAGCATC+AGG | 0.464677 | 3.2:-76877401 | MS.gene06744:CDS |
| TACAACTAGTACTGAAAGAT+TGG | 0.468120 | 3.2:-76877439 | MS.gene06744:CDS |
| AATATAAACCATTCGTGAGC+AGG | 0.468294 | 3.2:-76877530 | MS.gene06744:CDS |
| CATCAATAATTTCTGGGTGG+AGG | 0.490844 | 3.2:+76875535 | None:intergenic |
| TGGTGGTGATCATAGGCTTA+GGG | 0.497834 | 3.2:-76877373 | MS.gene06744:intron |
| ATCAATAATTTCTGGGTGGA+GGG | 0.509205 | 3.2:+76875536 | None:intergenic |
| CTTTCAGTACTAGTTGTAGC+AGG | 0.511083 | 3.2:+76877444 | None:intergenic |
| TAAGGCTTCAACAAAGTAGC+AGG | 0.515776 | 3.2:+76875443 | None:intergenic |
| CAAATCACTTTCAGATGTCT+CGG | 0.517164 | 3.2:-76875406 | MS.gene06744:CDS |
| AGGTATGGTCTTTGGTGAGG+AGG | 0.517669 | 3.2:-76877569 | MS.gene06744:CDS |
| ACCTCACTGAACCACTTGAT+CGG | 0.518102 | 3.2:-76875365 | MS.gene06744:CDS |
| CTCTTAAACTCCCAATCTCA+AGG | 0.524215 | 3.2:+76877490 | None:intergenic |
| AAAGTAGCAGGTCTCATCCT+TGG | 0.524327 | 3.2:+76875455 | None:intergenic |
| TGAGGGGAAACCTTGAGATT+GGG | 0.526415 | 3.2:-76877500 | MS.gene06744:CDS |
| CGTGAGCAGGTGTGTGGTGA+GGG | 0.527012 | 3.2:-76877517 | MS.gene06744:CDS |
| GAATATGCTCATTGTCATCA+AGG | 0.528687 | 3.2:+76877412 | None:intergenic |
| GAAGAACACTGATTCTGTCC+AGG | 0.537074 | 3.2:+76878283 | None:intergenic |
| TCTAGGTATGGTCTTTGGTG+AGG | 0.537536 | 3.2:-76877572 | MS.gene06744:intron |
| AGTGTTTAACACCACGGAGA+TGG | 0.545954 | 3.2:-76878335 | MS.gene06744:CDS |
| ACGAATGGTTTATATTTCTG+CGG | 0.550997 | 3.2:+76877537 | None:intergenic |
| GAAATTATTGATGGAAGACC+AGG | 0.551294 | 3.2:-76875525 | MS.gene06744:CDS |
| AACTAGTACTGAAAGATTGG+AGG | 0.551568 | 3.2:-76877436 | MS.gene06744:CDS |
| AACTCATGCATCCGATCAAG+TGG | 0.554489 | 3.2:+76875354 | None:intergenic |
| TCGGCGATGGCGAAAATGAA+CGG | 0.559282 | 3.2:-76878373 | None:intergenic |
| AGACATCACAATCAACAGCC+TGG | 0.570498 | 3.2:-76878301 | MS.gene06744:CDS |
| CTAAGCATCAGGATTATTGG+TGG | 0.576552 | 3.2:-76877390 | MS.gene06744:CDS |
| TCACTTTCAGATGTCTCGGA+AGG | 0.579393 | 3.2:-76875402 | MS.gene06744:CDS |
| ACCACACACCTGCTCACGAA+TGG | 0.579553 | 3.2:+76877522 | None:intergenic |
| GAGAAGTTGATGTTAAGTCA+GGG | 0.583074 | 3.2:-76877470 | MS.gene06744:CDS |
| ATGCATGAGTTGTTGATAAG+TGG | 0.595471 | 3.2:-76875342 | MS.gene06744:CDS |
| TCGTGAGCAGGTGTGTGGTG+AGG | 0.600369 | 3.2:-76877518 | MS.gene06744:CDS |
| CACTTTCAGATGTCTCGGAA+GGG | 0.603305 | 3.2:-76875401 | MS.gene06744:CDS |
| TGATGGAAGACCAGGAACGC+TGG | 0.621740 | 3.2:-76875517 | MS.gene06744:CDS |
| TTTGTGGTAGATGTACCAGA+GGG | 0.648012 | 3.2:-76875483 | MS.gene06744:CDS |
| TTCCATCAATAATTTCTGGG+TGG | 0.663028 | 3.2:+76875532 | None:intergenic |
| ACCATTCGTGAGCAGGTGTG+TGG | 0.686863 | 3.2:-76877523 | MS.gene06744:CDS |
| CAACGGAGTGTTTAACACCA+CGG | 0.688274 | 3.2:-76878341 | MS.gene06744:CDS |
| TCCGATCAAGTGGTTCAGTG+AGG | 0.707128 | 3.2:+76875364 | None:intergenic |
| GTGAGCAGGTGTGTGGTGAG+GGG | 0.713491 | 3.2:-76877516 | MS.gene06744:CDS |
| ATGAACGGAACTGAAAACAA+CGG | 0.716623 | 3.2:-76878358 | MS.gene06744:CDS |
| TGTACCAGAGGGGAATACCA+AGG | 0.724913 | 3.2:-76875472 | MS.gene06744:CDS |
| TCTGATGTACTCCATCTCCG+TGG | 0.739793 | 3.2:+76878324 | None:intergenic |
| TTGTGGTAGATGTACCAGAG+GGG | 0.770632 | 3.2:-76875482 | MS.gene06744:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTAGCTTTT+CGG | - | chr3.2:76875542-76875561 | MS.gene06744:CDS | 10.0% |
| !! | AATATAAATCAAGTAAAACA+TGG | - | chr3.2:76877963-76877982 | MS.gene06744:intron | 15.0% |
| !! | TAATAGAATCATTTAAACTA+TGG | + | chr3.2:76875788-76875807 | None:intergenic | 15.0% |
| !!! | TTTTTCAAAAATTTTACTTG+TGG | - | chr3.2:76875896-76875915 | MS.gene06744:intron | 15.0% |
| !! | AAAAATATCTGTTAAAGTGT+CGG | - | chr3.2:76877393-76877412 | MS.gene06744:CDS | 20.0% |
| !! | ATAAAATTATACACCTTGAA+AGG | + | chr3.2:76877759-76877778 | None:intergenic | 20.0% |
| !! | TATACATAATTAATCTCTGT+CGG | - | chr3.2:76876538-76876557 | MS.gene06744:intron | 20.0% |
| !! | TGTTTCATTCATATAATTGA+CGG | - | chr3.2:76876645-76876664 | MS.gene06744:intron | 20.0% |
| !!! | GTTATATGCTGTTTTTTTAA+TGG | - | chr3.2:76877259-76877278 | MS.gene06744:intron | 20.0% |
| !!! | GTTTCAAGTTTAAATTATGA+TGG | + | chr3.2:76876911-76876930 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTTAATTAAGCA+AGG | + | chr3.2:76878112-76878131 | None:intergenic | 20.0% |
| ! | AAAAAACAGCATATAACTAG+AGG | + | chr3.2:76877256-76877275 | None:intergenic | 25.0% |
| ! | AAAAACAGCATATAACTAGA+GGG | + | chr3.2:76877255-76877274 | None:intergenic | 25.0% |
| ! | AAAAATCTCTAATCCATATC+TGG | - | chr3.2:76876568-76876587 | MS.gene06744:intron | 25.0% |
| ! | AAAATCTCTAATCCATATCT+GGG | - | chr3.2:76876569-76876588 | MS.gene06744:intron | 25.0% |
| ! | AAACTATGACAGTTAATTAG+TGG | + | chr3.2:76877586-76877605 | None:intergenic | 25.0% |
| ! | AAATCAAGTAAAACATGGAA+GGG | - | chr3.2:76877968-76877987 | MS.gene06744:intron | 25.0% |
| ! | ACACGTCATTTAGTATATTT+GGG | - | chr3.2:76876795-76876814 | MS.gene06744:intron | 25.0% |
| ! | AGAATCTAGCAAATCAAAAA+CGG | + | chr3.2:76875521-76875540 | None:intergenic | 25.0% |
| ! | ATAGTAAGATTGATTACAAG+AGG | + | chr3.2:76875479-76875498 | None:intergenic | 25.0% |
| ! | CATTCTTAGCAATATATGAT+GGG | + | chr3.2:76877326-76877345 | None:intergenic | 25.0% |
| ! | GATTTATATTCCATAATCAG+AGG | + | chr3.2:76877953-76877972 | None:intergenic | 25.0% |
| ! | TAAATCAAGTAAAACATGGA+AGG | - | chr3.2:76877967-76877986 | MS.gene06744:intron | 25.0% |
| ! | TACACGTCATTTAGTATATT+TGG | - | chr3.2:76876794-76876813 | MS.gene06744:intron | 25.0% |
| ! | TCTTCCCAAAATATAAAATG+CGG | + | chr3.2:76877839-76877858 | None:intergenic | 25.0% |
| ! | TGATATTATGATGTAGAGTT+TGG | - | chr3.2:76876002-76876021 | MS.gene06744:intron | 25.0% |
| ! | TTAAGATTCCTTGAATTCTT+AGG | - | chr3.2:76877560-76877579 | MS.gene06744:CDS | 25.0% |
| ! | TTGTATTAAACCAATTCTTG+TGG | + | chr3.2:76877684-76877703 | None:intergenic | 25.0% |
| ! | TTTCAACAAAAGAGTAATGA+AGG | + | chr3.2:76876384-76876403 | None:intergenic | 25.0% |
| !! | AGCTAAAATTTTCATTGTCT+AGG | - | chr3.2:76877507-76877526 | MS.gene06744:CDS | 25.0% |
| !! | GATATTAGTTTATAGGTACA+TGG | - | chr3.2:76877047-76877066 | MS.gene06744:intron | 25.0% |
| !! | TTCTAGAGACATCATAATAT+AGG | + | chr3.2:76877630-76877649 | None:intergenic | 25.0% |
| !! | TTTGAGATTGCACTTAATTA+AGG | + | chr3.2:76878283-76878302 | None:intergenic | 25.0% |
| !!! | CTTTTAAATTTCTGGGAATT+AGG | + | chr3.2:76877175-76877194 | None:intergenic | 25.0% |
| !!! | GACAATGAAAATTTTAGCTA+CGG | + | chr3.2:76877506-76877525 | None:intergenic | 25.0% |
| !!! | GTTTTTTTTTTCCTTTCTCT+AGG | - | chr3.2:76876116-76876135 | MS.gene06744:intron | 25.0% |
| AAGGAATCTTAAAATGTCCT+TGG | + | chr3.2:76877552-76877571 | None:intergenic | 30.0% | |
| ATTCTAAGCATCAGGATTAT+TGG | - | chr3.2:76876312-76876331 | MS.gene06744:intron | 30.0% | |
| CACGTCATTTAGTATATTTG+GGG | - | chr3.2:76876796-76876815 | MS.gene06744:intron | 30.0% | |
| CCATCATATATTGCTAAGAA+TGG | - | chr3.2:76877324-76877343 | MS.gene06744:intron | 30.0% | |
| CCATTCTTAGCAATATATGA+TGG | + | chr3.2:76877327-76877346 | None:intergenic | 30.0% | |
| GACGTGTATAATAATACAAC+TGG | + | chr3.2:76876782-76876801 | None:intergenic | 30.0% | |
| GATAGAAATTTCAGAATGAG+TGG | + | chr3.2:76876426-76876445 | None:intergenic | 30.0% | |
| GATTCTACTATGTTTCTCAA+TGG | - | chr3.2:76876076-76876095 | MS.gene06744:intron | 30.0% | |
| GGTAAATTTGAAAACATGTC+TGG | - | chr3.2:76877812-76877831 | MS.gene06744:intron | 30.0% | |
| GTCTTCCATCAATAATTTCT+GGG | + | chr3.2:76878179-76878198 | None:intergenic | 30.0% | |
| TATAGGTACATGGTCAAAAT+AGG | - | chr3.2:76877057-76877076 | MS.gene06744:intron | 30.0% | |
| TCAATAATCTCTCTTCACTT+TGG | - | chr3.2:76877726-76877745 | MS.gene06744:intron | 30.0% | |
| TCATATTCAAGTATGAAGCA+CGG | + | chr3.2:76875954-76875973 | None:intergenic | 30.0% | |
| TTACCTAAAAGTAACATTCC+CGG | + | chr3.2:76877797-76877816 | None:intergenic | 30.0% | |
| TTATATTCCATAATCAGAGG+TGG | + | chr3.2:76877950-76877969 | None:intergenic | 30.0% | |
| ! | ACGAATGGTTTATATTTCTG+CGG | + | chr3.2:76876171-76876190 | None:intergenic | 30.0% |
| ! | AGACTAGGCTTTTAAATTTC+TGG | + | chr3.2:76877183-76877202 | None:intergenic | 30.0% |
| ! | GACTAGGCTTTTAAATTTCT+GGG | + | chr3.2:76877182-76877201 | None:intergenic | 30.0% |
| ! | GAGCTCTGATATTAGTTTAT+AGG | - | chr3.2:76877040-76877059 | MS.gene06744:intron | 30.0% |
| ! | TACAACTAGTACTGAAAGAT+TGG | - | chr3.2:76876266-76876285 | MS.gene06744:intron | 30.0% |
| ! | TGGTCCGCATTTTATATTTT+GGG | - | chr3.2:76877832-76877851 | MS.gene06744:intron | 30.0% |
| ! | TTATCCTTTTGTCGTTATGA+TGG | - | chr3.2:76876834-76876853 | MS.gene06744:intron | 30.0% |
| ! | TTGTTGTTAATTAAGCAAGG+TGG | + | chr3.2:76878109-76878128 | None:intergenic | 30.0% |
| !! | TATGTATATTCTGTTTCTGC+CGG | + | chr3.2:76876526-76876545 | None:intergenic | 30.0% |
| !!! | TTTTTTCCTTTCTCTAGGTA+TGG | - | chr3.2:76876121-76876140 | MS.gene06744:intron | 30.0% |
| AAAGTAGAGATCCTATGCAT+CGG | + | chr3.2:76876878-76876897 | None:intergenic | 35.0% | |
| AATATAAACCATTCGTGAGC+AGG | - | chr3.2:76876175-76876194 | MS.gene06744:intron | 35.0% | |
| AATTTCAGAATGAGTGGTTG+AGG | + | chr3.2:76876420-76876439 | None:intergenic | 35.0% | |
| AGATTGATTACAAGAGGAAC+AGG | + | chr3.2:76875473-76875492 | None:intergenic | 35.0% | |
| AGCAATTCCAATGAGAAACA+TGG | + | chr3.2:76875744-76875763 | None:intergenic | 35.0% | |
| AGTATATCCACCTCTGATTA+TGG | - | chr3.2:76877940-76877959 | MS.gene06744:intron | 35.0% | |
| ATCCGTTACCATATAACTAG+TGG | + | chr3.2:76877287-76877306 | None:intergenic | 35.0% | |
| ATGAACGGAACTGAAAACAA+CGG | - | chr3.2:76875347-76875366 | MS.gene06744:CDS | 35.0% | |
| ATGAGCATATTCTAAGCATC+AGG | - | chr3.2:76876304-76876323 | MS.gene06744:intron | 35.0% | |
| ATTAACTTTAAGCCAGCAGA+AGG | + | chr3.2:76877420-76877439 | None:intergenic | 35.0% | |
| ATTAGTGGCCTAAGAATTCA+AGG | + | chr3.2:76877571-76877590 | None:intergenic | 35.0% | |
| CAAATCACTTTCAGATGTCT+CGG | - | chr3.2:76878299-76878318 | MS.gene06744:CDS | 35.0% | |
| GAAATTATTGATGGAAGACC+AGG | - | chr3.2:76878180-76878199 | MS.gene06744:intron | 35.0% | |
| GAATATGCTCATTGTCATCA+AGG | + | chr3.2:76876296-76876315 | None:intergenic | 35.0% | |
| GCCTTAACGAAAACAATCTA+AGG | + | chr3.2:76878017-76878036 | None:intergenic | 35.0% | |
| GGTCTTCCATCAATAATTTC+TGG | + | chr3.2:76878180-76878199 | None:intergenic | 35.0% | |
| GTCATTTAGTATATTTGGGG+TGG | - | chr3.2:76876799-76876818 | MS.gene06744:intron | 35.0% | |
| GTTAAGGCTTGCACTTAATT+TGG | - | chr3.2:76878029-76878048 | MS.gene06744:intron | 35.0% | |
| TAAATGATGCGAGAAAGAAG+TGG | - | chr3.2:76877871-76877890 | MS.gene06744:intron | 35.0% | |
| TCAGATAGCATGAGAATGAA+AGG | + | chr3.2:76877917-76877936 | None:intergenic | 35.0% | |
| TCCGTTACCATATAACTAGT+GGG | + | chr3.2:76877286-76877305 | None:intergenic | 35.0% | |
| TCTATTAGTTCGTTGCTTGA+GGG | - | chr3.2:76876613-76876632 | MS.gene06744:intron | 35.0% | |
| TTCAACCAATTGTCAAACCA+AGG | - | chr3.2:76877532-76877551 | MS.gene06744:CDS | 35.0% | |
| TTGTTAATTAAGCAAGGTGG+AGG | + | chr3.2:76878106-76878125 | None:intergenic | 35.0% | |
| ! | AACTAGTACTGAAAGATTGG+AGG | - | chr3.2:76876269-76876288 | MS.gene06744:intron | 35.0% |
| ! | AATGTCCTTGGTTTGACAAT+TGG | + | chr3.2:76877540-76877559 | None:intergenic | 35.0% |
| ! | ATATGATGGGAAACAGTGTT+AGG | + | chr3.2:76877313-76877332 | None:intergenic | 35.0% |
| ! | ATCAATAATTTCTGGGTGGA+GGG | + | chr3.2:76878172-76878191 | None:intergenic | 35.0% |
| ! | ATGCATGAGTTGTTGATAAG+TGG | - | chr3.2:76878363-76878382 | MS.gene06744:CDS | 35.0% |
| ! | CTGGTCCGCATTTTATATTT+TGG | - | chr3.2:76877831-76877850 | MS.gene06744:intron | 35.0% |
| ! | GCCTTAGATTGTTTTCGTTA+AGG | - | chr3.2:76878013-76878032 | MS.gene06744:intron | 35.0% |
| ! | GCTGGTAATTGAATCTTTTG+TGG | - | chr3.2:76878206-76878225 | MS.gene06744:intron | 35.0% |
| ! | TCATGTGCATCGTTTTACAA+AGG | - | chr3.2:76877370-76877389 | MS.gene06744:intron | 35.0% |
| ! | TCTAAGGCAATATTGAGTCT+AGG | + | chr3.2:76878001-76878020 | None:intergenic | 35.0% |
| ! | TTCCATCAATAATTTCTGGG+TGG | + | chr3.2:76878176-76878195 | None:intergenic | 35.0% |
| ! | TTTAGTATATTTGGGGTGGA+AGG | - | chr3.2:76876803-76876822 | MS.gene06744:intron | 35.0% |
| !! | AAGAGAGATTATTGACTCAG+AGG | + | chr3.2:76877721-76877740 | None:intergenic | 35.0% |
| !! | AGAGAAGTTGATGTTAAGTC+AGG | - | chr3.2:76876234-76876253 | MS.gene06744:intron | 35.0% |
| !! | GAGAAGTTGATGTTAAGTCA+GGG | - | chr3.2:76876235-76876254 | MS.gene06744:intron | 35.0% |
| !! | TTATTGACTCAGAGGAATCT+TGG | + | chr3.2:76877713-76877732 | None:intergenic | 35.0% |
| !!! | AGTTTTACATGGACTAGACT+AGG | + | chr3.2:76877198-76877217 | None:intergenic | 35.0% |
| !!! | GCTGGTTAGTTAGTTTTACA+TGG | + | chr3.2:76877209-76877228 | None:intergenic | 35.0% |
| ACCAGAAGAACCAAACATCA+AGG | + | chr3.2:76877467-76877486 | None:intergenic | 40.0% | |
| ACTTATCAGTTGAGCAAGCA+TGG | + | chr3.2:76876973-76876992 | None:intergenic | 40.0% | |
| AGTGCTTAAGCCACAAGAAT+TGG | - | chr3.2:76877671-76877690 | MS.gene06744:intron | 40.0% | |
| ATGTAATTCGCATGTGTCAG+TGG | + | chr3.2:76875863-76875882 | None:intergenic | 40.0% | |
| CAAAGACCATACCTAGAGAA+AGG | + | chr3.2:76876130-76876149 | None:intergenic | 40.0% | |
| CAGTATCAACATCCCAGATA+TGG | + | chr3.2:76876584-76876603 | None:intergenic | 40.0% | |
| CCCCACTAGTTATATGGTAA+CGG | - | chr3.2:76877282-76877301 | MS.gene06744:intron | 40.0% | |
| CCGTTACCATATAACTAGTG+GGG | + | chr3.2:76877285-76877304 | None:intergenic | 40.0% | |
| CTAAGCATCAGGATTATTGG+TGG | - | chr3.2:76876315-76876334 | MS.gene06744:intron | 40.0% | |
| CTCCACCCAGAAATTATTGA+TGG | - | chr3.2:76878171-76878190 | MS.gene06744:intron | 40.0% | |
| CTCTTAAACTCCCAATCTCA+AGG | + | chr3.2:76876218-76876237 | None:intergenic | 40.0% | |
| CTTGCCATCATAACGACAAA+AGG | + | chr3.2:76876841-76876860 | None:intergenic | 40.0% | |
| CTTTCAGTACTAGTTGTAGC+AGG | + | chr3.2:76876264-76876283 | None:intergenic | 40.0% | |
| CTTTCTCTAGGTATGGTCTT+TGG | - | chr3.2:76876128-76876147 | MS.gene06744:intron | 40.0% | |
| GATTCTGCCATGTTTCTCAT+TGG | - | chr3.2:76875734-76875753 | MS.gene06744:intron | 40.0% | |
| GGATGTTGATACTGTTAGGA+AGG | - | chr3.2:76876590-76876609 | MS.gene06744:intron | 40.0% | |
| GGTACATGGTCAAAATAGGA+AGG | - | chr3.2:76877061-76877080 | MS.gene06744:intron | 40.0% | |
| GTCTATTAGTTCGTTGCTTG+AGG | - | chr3.2:76876612-76876631 | MS.gene06744:intron | 40.0% | |
| GTGAGATTGCATGCAATATG+TGG | + | chr3.2:76876448-76876467 | None:intergenic | 40.0% | |
| GTGTAAGATACACATTGCAC+CGG | - | chr3.2:76876504-76876523 | MS.gene06744:intron | 40.0% | |
| TAAGGCTTCAACAAAGTAGC+AGG | + | chr3.2:76878265-76878284 | None:intergenic | 40.0% | |
| TAATGGCCCCACTAGTTATA+TGG | - | chr3.2:76877276-76877295 | MS.gene06744:intron | 40.0% | |
| TATGATGTAGAGTTTGGCTG+TGG | - | chr3.2:76876008-76876027 | MS.gene06744:intron | 40.0% | |
| TCGACAAGTTCCTTGATGTT+TGG | - | chr3.2:76877454-76877473 | MS.gene06744:CDS | 40.0% | |
| TGGCTAGAGCTTATACTACT+CGG | + | chr3.2:76876762-76876781 | None:intergenic | 40.0% | |
| TTAATTAAGCAAGGTGGAGG+AGG | + | chr3.2:76878103-76878122 | None:intergenic | 40.0% | |
| TTCTTGTGGCTTAAGCACTT+AGG | + | chr3.2:76877670-76877689 | None:intergenic | 40.0% | |
| TTTGTGGTAGATGTACCAGA+GGG | - | chr3.2:76878222-76878241 | MS.gene06744:intron | 40.0% | |
| ! | ACGCATTTCATCAGAAGTGT+CGG | + | chr3.2:76875811-76875830 | None:intergenic | 40.0% |
| ! | CATCAATAATTTCTGGGTGG+AGG | + | chr3.2:76878173-76878192 | None:intergenic | 40.0% |
| ! | CTTTGGAGATGTTCCTTTCA+AGG | - | chr3.2:76877743-76877762 | MS.gene06744:intron | 40.0% |
| ! | GCTTAAGCACTTAGGCTTTT+GGG | + | chr3.2:76877662-76877681 | None:intergenic | 40.0% |
| ! | TCTGGGATGTTGATACTGTT+AGG | - | chr3.2:76876586-76876605 | MS.gene06744:intron | 40.0% |
| ! | TTTTGTGGTAGATGTACCAG+AGG | - | chr3.2:76878221-76878240 | MS.gene06744:intron | 40.0% |
| !! | GCACTGACACTTTTAATGGA+AGG | - | chr3.2:76875593-76875612 | MS.gene06744:intron | 40.0% |
| !! | GGATTATTGGTGGTGATCAT+AGG | - | chr3.2:76876325-76876344 | MS.gene06744:intron | 40.0% |
| !! | TCCATTAAAAGTGTCAGTGC+TGG | + | chr3.2:76875593-76875612 | None:intergenic | 40.0% |
| !! | TCCTTGATGTTTGGTTCTTC+TGG | - | chr3.2:76877463-76877482 | MS.gene06744:CDS | 40.0% |
| !!! | TCCAGCACTGACACTTTTAA+TGG | - | chr3.2:76875589-76875608 | MS.gene06744:intron | 40.0% |
| !!! | TGTCCGGGAATGTTACTTTT+AGG | - | chr3.2:76877791-76877810 | MS.gene06744:intron | 40.0% |
| AAAGTAGCAGGTCTCATCCT+TGG | + | chr3.2:76878253-76878272 | None:intergenic | 45.0% | |
| AACTCATGCATCCGATCAAG+TGG | + | chr3.2:76878354-76878373 | None:intergenic | 45.0% | |
| ACCTCACTGAACCACTTGAT+CGG | - | chr3.2:76878340-76878359 | MS.gene06744:CDS | 45.0% | |
| AGACATCACAATCAACAGCC+TGG | - | chr3.2:76875404-76875423 | MS.gene06744:CDS | 45.0% | |
| AGTGTTTAACACCACGGAGA+TGG | - | chr3.2:76875370-76875389 | MS.gene06744:CDS | 45.0% | |
| ATGCATCGGAAACAAGTACC+AGG | + | chr3.2:76876864-76876883 | None:intergenic | 45.0% | |
| CACTTTCAGATGTCTCGGAA+GGG | - | chr3.2:76878304-76878323 | MS.gene06744:CDS | 45.0% | |
| CTTCTGATGAAATGCGTGTC+TGG | - | chr3.2:76875814-76875833 | MS.gene06744:intron | 45.0% | |
| GAGATGCAGTGAAAGTTTGC+AGG | + | chr3.2:76876933-76876952 | None:intergenic | 45.0% | |
| GAGCTCAGATCTTTGAGCTA+TGG | + | chr3.2:76877026-76877045 | None:intergenic | 45.0% | |
| GATTCAATTACCAGCGTTCC+TGG | + | chr3.2:76878201-76878220 | None:intergenic | 45.0% | |
| GGTACTTGTTTCCGATGCAT+AGG | - | chr3.2:76876864-76876883 | MS.gene06744:intron | 45.0% | |
| TCACTTTCAGATGTCTCGGA+AGG | - | chr3.2:76878303-76878322 | MS.gene06744:CDS | 45.0% | |
| TCTAGGTATGGTCTTTGGTG+AGG | - | chr3.2:76876133-76876152 | MS.gene06744:intron | 45.0% | |
| TGAGGGGAAACCTTGAGATT+GGG | - | chr3.2:76876205-76876224 | MS.gene06744:intron | 45.0% | |
| TTATTCCCGAGAACACTGTC+CGG | - | chr3.2:76877775-76877794 | MS.gene06744:intron | 45.0% | |
| TTGTGGTAGATGTACCAGAG+GGG | - | chr3.2:76878223-76878242 | MS.gene06744:intron | 45.0% | |
| ! | CAACGGAGTGTTTAACACCA+CGG | - | chr3.2:76875364-76875383 | MS.gene06744:CDS | 45.0% |
| ! | GGCTTAAGCACTTAGGCTTT+TGG | + | chr3.2:76877663-76877682 | None:intergenic | 45.0% |
| ! | TGGTGGTGATCATAGGCTTA+GGG | - | chr3.2:76876332-76876351 | MS.gene06744:intron | 45.0% |
| !! | GAAGAACACTGATTCTGTCC+AGG | + | chr3.2:76875425-76875444 | None:intergenic | 45.0% |
| !! | TTGGTGGTGATCATAGGCTT+AGG | - | chr3.2:76876331-76876350 | MS.gene06744:intron | 45.0% |
| ACATTCCCGGACAGTGTTCT+CGG | + | chr3.2:76877784-76877803 | None:intergenic | 50.0% | |
| ACCAGCTCACTGCTACACTT+AGG | - | chr3.2:76877223-76877242 | MS.gene06744:intron | 50.0% | |
| ACCTAAGTGTAGCAGTGAGC+TGG | + | chr3.2:76877227-76877246 | None:intergenic | 50.0% | |
| AGGTATGGTCTTTGGTGAGG+AGG | - | chr3.2:76876136-76876155 | MS.gene06744:intron | 50.0% | |
| ATGAAGCACGGCACATACAC+TGG | + | chr3.2:76875942-76875961 | None:intergenic | 50.0% | |
| ATTAAGCAAGGTGGAGGAGG+AGG | + | chr3.2:76878100-76878119 | None:intergenic | 50.0% | |
| GTGAGGGGAAACCTTGAGAT+TGG | - | chr3.2:76876204-76876223 | MS.gene06744:intron | 50.0% | |
| TATTCCCGAGAACACTGTCC+GGG | - | chr3.2:76877776-76877795 | MS.gene06744:intron | 50.0% | |
| TCATCCTTGGTATTCCCCTC+TGG | + | chr3.2:76878240-76878259 | None:intergenic | 50.0% | |
| TCCGATCAAGTGGTTCAGTG+AGG | + | chr3.2:76878344-76878363 | None:intergenic | 50.0% | |
| TCTGATGTACTCCATCTCCG+TGG | + | chr3.2:76875384-76875403 | None:intergenic | 50.0% | |
| TGGAAGACACCAACACGTGT+CGG | + | chr3.2:76875843-76875862 | None:intergenic | 50.0% | |
| TGTACCAGAGGGGAATACCA+AGG | - | chr3.2:76878233-76878252 | MS.gene06744:intron | 50.0% | |
| TGTCGTTATGATGGCAAGCC+TGG | - | chr3.2:76876843-76876862 | MS.gene06744:intron | 50.0% | |
| !! | TAAAGTGTCGGTCCTTCTGC+TGG | - | chr3.2:76877405-76877424 | MS.gene06744:CDS | 50.0% |
| ACCACACACCTGCTCACGAA+TGG | + | chr3.2:76876186-76876205 | None:intergenic | 55.0% | |
| ACCATTCGTGAGCAGGTGTG+TGG | - | chr3.2:76876182-76876201 | MS.gene06744:intron | 55.0% | |
| CATTCCCGGACAGTGTTCTC+GGG | + | chr3.2:76877783-76877802 | None:intergenic | 55.0% | |
| GTCTGGTATCCGACACGTGT+TGG | - | chr3.2:76875831-76875850 | MS.gene06744:intron | 55.0% | |
| TGATGGAAGACCAGGAACGC+TGG | - | chr3.2:76878188-76878207 | MS.gene06744:intron | 55.0% | |
| CGTGAGCAGGTGTGTGGTGA+GGG | - | chr3.2:76876188-76876207 | MS.gene06744:intron | 60.0% | |
| GTGAGCAGGTGTGTGGTGAG+GGG | - | chr3.2:76876189-76876208 | MS.gene06744:intron | 60.0% | |
| TCGTGAGCAGGTGTGTGGTG+AGG | - | chr3.2:76876187-76876206 | MS.gene06744:intron | 60.0% | |
| ! | CTCGGAAGGGCATGCTGTGC+AGG | - | chr3.2:76878317-76878336 | MS.gene06744:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 76875338 | 76878389 | 76875338 | ID=MS.gene06744 |
| chr3.2 | mRNA | 76875338 | 76878389 | 76875338 | ID=MS.gene06744.t1;Parent=MS.gene06744 |
| chr3.2 | exon | 76878246 | 76878389 | 76878246 | ID=MS.gene06744.t1.exon1;Parent=MS.gene06744.t1 |
| chr3.2 | CDS | 76878246 | 76878389 | 76878246 | ID=cds.MS.gene06744.t1;Parent=MS.gene06744.t1 |
| chr3.2 | exon | 76877374 | 76877589 | 76877374 | ID=MS.gene06744.t1.exon2;Parent=MS.gene06744.t1 |
| chr3.2 | CDS | 76877374 | 76877589 | 76877374 | ID=cds.MS.gene06744.t1;Parent=MS.gene06744.t1 |
| chr3.2 | exon | 76875338 | 76875577 | 76875338 | ID=MS.gene06744.t1.exon3;Parent=MS.gene06744.t1 |
| chr3.2 | CDS | 76875338 | 76875577 | 76875338 | ID=cds.MS.gene06744.t1;Parent=MS.gene06744.t1 |
| Gene Sequence |
| Protein sequence |
