Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057110.t1 | XP_003602205.1 | 98.5 | 199 | 3 | 0 | 1 | 199 | 1 | 199 | 1.50E-108 | 402.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057110.t1 | Q9FGM1 | 79.3 | 184 | 34 | 1 | 8 | 187 | 2 | 185 | 9.4e-80 | 297.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057110.t1 | G7J6S4 | 98.5 | 199 | 3 | 0 | 1 | 199 | 1 | 199 | 1.1e-108 | 402.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050384 | MS.gene057110 | 0.826161 | 3.16E-54 | -1.69E-46 |
| MS.gene050386 | MS.gene057110 | 0.834295 | 3.26E-56 | -1.69E-46 |
| MS.gene057108 | MS.gene057110 | 0.993563 | 1.31E-200 | -1.69E-46 |
| MS.gene057109 | MS.gene057110 | 0.993923 | 3.15E-203 | -1.69E-46 |
| MS.gene057110 | MS.gene066067 | 0.814051 | 1.88E-51 | -1.69E-46 |
| MS.gene057110 | MS.gene066342 | 0.809527 | 1.81E-50 | -1.69E-46 |
| MS.gene057110 | MS.gene06744 | 0.994431 | 3.41E-207 | -1.69E-46 |
| MS.gene057110 | MS.gene06745 | 0.990432 | 1.32E-182 | -1.69E-46 |
| MS.gene057110 | MS.gene067635 | 0.816654 | 4.95E-52 | -1.69E-46 |
| MS.gene057110 | MS.gene068166 | 0.812113 | 4.99E-51 | -1.69E-46 |
| MS.gene057110 | MS.gene072808 | 0.807172 | 5.75E-50 | -1.69E-46 |
| MS.gene057110 | MS.gene23256 | 0.814291 | 1.66E-51 | -1.69E-46 |
| MS.gene057110 | MS.gene23484 | 0.825496 | 4.54E-54 | -1.69E-46 |
| MS.gene057110 | MS.gene34115 | 0.806797 | 6.91E-50 | -1.69E-46 |
| MS.gene057110 | MS.gene35436 | 0.826802 | 2.22E-54 | -1.69E-46 |
| MS.gene057110 | MS.gene36311 | 0.803086 | 4.12E-49 | -1.69E-46 |
| MS.gene057110 | MS.gene46376 | 0.804826 | 1.79E-49 | -1.69E-46 |
| MS.gene057110 | MS.gene47818 | 0.807109 | 5.93E-50 | -1.69E-46 |
| MS.gene057110 | MS.gene50027 | 0.810935 | 9.00E-51 | -1.69E-46 |
| MS.gene057110 | MS.gene53935 | 0.822417 | 2.40E-53 | -1.69E-46 |
| MS.gene057110 | MS.gene60300 | 0.801533 | 8.61E-49 | -1.69E-46 |
| MS.gene057110 | MS.gene63673 | 0.825517 | 4.49E-54 | -1.69E-46 |
| MS.gene057110 | MS.gene67082 | 0.806638 | 7.46E-50 | -1.69E-46 |
| MS.gene057110 | MS.gene81239 | 0.837258 | 5.78E-57 | -1.69E-46 |
| MS.gene057110 | MS.gene85109 | 0.832543 | 8.91E-56 | -1.69E-46 |
| MS.gene057110 | MS.gene85111 | 0.801591 | 8.37E-49 | -1.69E-46 |
| MS.gene057110 | MS.gene99465 | 0.809152 | 2.18E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene86009 | MS.gene057110 | PPI |
| MS.gene95282 | MS.gene057110 | PPI |
| MS.gene79764 | MS.gene057110 | PPI |
| MS.gene59569 | MS.gene057110 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057110.t1 | MTR_3g090980 | 98.492 | 199 | 3 | 0 | 1 | 199 | 1 | 199 | 1.96e-147 | 407 |
| MS.gene057110.t1 | MTR_1g028380 | 86.842 | 190 | 24 | 1 | 4 | 192 | 1 | 190 | 1.21e-122 | 344 |
| MS.gene057110.t1 | MTR_8g027805 | 75.269 | 186 | 45 | 1 | 5 | 190 | 3 | 187 | 3.15e-103 | 295 |
| MS.gene057110.t1 | MTR_3g071740 | 53.012 | 166 | 73 | 4 | 15 | 178 | 60 | 222 | 6.25e-59 | 184 |
| MS.gene057110.t1 | MTR_5g083270 | 52.147 | 163 | 72 | 3 | 19 | 178 | 44 | 203 | 9.05e-57 | 178 |
| MS.gene057110.t1 | MTR_7g070050 | 55.491 | 173 | 71 | 3 | 15 | 181 | 7 | 179 | 1.61e-55 | 174 |
| MS.gene057110.t1 | MTR_4g014460 | 45.455 | 176 | 91 | 2 | 8 | 178 | 32 | 207 | 6.86e-53 | 169 |
| MS.gene057110.t1 | MTR_1g016480 | 46.471 | 170 | 82 | 3 | 16 | 177 | 28 | 196 | 1.42e-52 | 167 |
| MS.gene057110.t1 | MTR_5g030500 | 48.795 | 166 | 78 | 3 | 20 | 179 | 43 | 207 | 1.08e-49 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057110.t1 | AT5G53160 | 79.348 | 184 | 34 | 1 | 8 | 187 | 2 | 185 | 2.20e-105 | 301 |
| MS.gene057110.t1 | AT1G01360 | 74.317 | 183 | 45 | 1 | 5 | 187 | 7 | 187 | 2.18e-98 | 283 |
| MS.gene057110.t1 | AT4G27920 | 71.591 | 176 | 45 | 2 | 4 | 178 | 1 | 172 | 2.49e-92 | 268 |
| MS.gene057110.t1 | AT4G01026 | 69.945 | 183 | 53 | 1 | 7 | 189 | 11 | 191 | 4.65e-90 | 263 |
| MS.gene057110.t1 | AT5G53160 | 75.214 | 117 | 25 | 1 | 8 | 120 | 2 | 118 | 5.66e-60 | 185 |
| MS.gene057110.t1 | AT2G40330 | 48.171 | 164 | 81 | 2 | 19 | 178 | 46 | 209 | 3.39e-53 | 169 |
| MS.gene057110.t1 | AT5G05440 | 50.633 | 158 | 73 | 3 | 19 | 174 | 43 | 197 | 3.89e-53 | 169 |
| MS.gene057110.t1 | AT2G38310 | 53.374 | 163 | 71 | 2 | 23 | 183 | 41 | 200 | 4.16e-53 | 169 |
| MS.gene057110.t1 | AT2G26040 | 45.238 | 168 | 87 | 3 | 21 | 184 | 22 | 188 | 4.45e-51 | 163 |
| MS.gene057110.t1 | AT4G17870 | 47.853 | 163 | 83 | 1 | 21 | 181 | 17 | 179 | 4.02e-48 | 155 |
| MS.gene057110.t1 | AT1G73000 | 41.176 | 170 | 89 | 2 | 21 | 179 | 37 | 206 | 1.25e-43 | 145 |
| MS.gene057110.t1 | AT5G45870 | 51.007 | 149 | 70 | 2 | 31 | 178 | 7 | 153 | 9.28e-40 | 133 |
| MS.gene057110.t1 | AT5G46790 | 46.341 | 164 | 83 | 2 | 21 | 179 | 44 | 207 | 1.12e-39 | 135 |
| MS.gene057110.t1 | AT5G46790 | 46.341 | 164 | 83 | 2 | 21 | 179 | 44 | 207 | 1.12e-39 | 135 |
| MS.gene057110.t1 | AT5G45860 | 49.383 | 162 | 73 | 3 | 18 | 178 | 1 | 154 | 1.08e-38 | 130 |
| MS.gene057110.t1 | AT4G18620 | 44.025 | 159 | 82 | 1 | 27 | 178 | 2 | 160 | 1.88e-35 | 122 |
Find 57 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCTTCCATCAATAATTTC+TGG | 0.156182 | 3.2:+76843849 | None:intergenic |
| CTTTCTCTAGGTATGGTCTT+TGG | 0.253746 | 3.2:-76845898 | MS.gene057110:intron |
| TTTGAGATTGCACTTAATTA+AGG | 0.261510 | 3.2:+76843746 | None:intergenic |
| ATTCTAAGCATCAGGATTAT+TGG | 0.270575 | 3.2:-76845714 | MS.gene057110:CDS |
| GTCTTCCATCAATAATTTCT+GGG | 0.334881 | 3.2:+76843850 | None:intergenic |
| GATTCAATTACCAGCGTTCC+TGG | 0.351242 | 3.2:+76843828 | None:intergenic |
| GGATTATTGGTGGTGATCAT+AGG | 0.376992 | 3.2:-76845701 | MS.gene057110:CDS |
| CTCGGAAGGGCATGCTGTGC+AGG | 0.389173 | 3.2:-76843709 | MS.gene057110:CDS |
| AGAGAAGTTGATGTTAAGTC+AGG | 0.400572 | 3.2:-76845792 | MS.gene057110:CDS |
| CTCCACCCAGAAATTATTGA+TGG | 0.415182 | 3.2:-76843855 | MS.gene057110:CDS |
| AGATTGATTACAAGAGGAAC+AGG | 0.418165 | 3.2:+76846556 | None:intergenic |
| TTGGTGGTGATCATAGGCTT+AGG | 0.430017 | 3.2:-76845695 | MS.gene057110:CDS |
| GTGAGGGGAAACCTTGAGAT+TGG | 0.441356 | 3.2:-76845822 | MS.gene057110:CDS |
| TCATCCTTGGTATTCCCCTC+TGG | 0.450075 | 3.2:+76843789 | None:intergenic |
| ATGAGCATATTCTAAGCATC+AGG | 0.464677 | 3.2:-76845722 | MS.gene057110:CDS |
| TACAACTAGTACTGAAAGAT+TGG | 0.468120 | 3.2:-76845760 | MS.gene057110:CDS |
| AATATAAACCATTCGTGAGC+AGG | 0.468294 | 3.2:-76845851 | MS.gene057110:CDS |
| CATCAATAATTTCTGGGTGG+AGG | 0.490844 | 3.2:+76843856 | None:intergenic |
| TGGTGGTGATCATAGGCTTA+GGG | 0.497834 | 3.2:-76845694 | MS.gene057110:intron |
| ATCAATAATTTCTGGGTGGA+GGG | 0.509205 | 3.2:+76843857 | None:intergenic |
| CTTTCAGTACTAGTTGTAGC+AGG | 0.511083 | 3.2:+76845765 | None:intergenic |
| TAAGGCTTCAACAAAGTAGC+AGG | 0.515776 | 3.2:+76843764 | None:intergenic |
| CAAATCACTTTCAGATGTCT+CGG | 0.517164 | 3.2:-76843727 | MS.gene057110:CDS |
| AGGTATGGTCTTTGGTGAGG+AGG | 0.517669 | 3.2:-76845890 | MS.gene057110:CDS |
| ACCTCACTGAACCACTTGAT+CGG | 0.518102 | 3.2:-76843686 | MS.gene057110:CDS |
| CTCTTAAACTCCCAATCTCA+AGG | 0.524215 | 3.2:+76845811 | None:intergenic |
| AAAGTAGCAGGTCTCATCCT+TGG | 0.524327 | 3.2:+76843776 | None:intergenic |
| TGAGGGGAAACCTTGAGATT+GGG | 0.526415 | 3.2:-76845821 | MS.gene057110:CDS |
| CGTGAGCAGGTGTGTGGTGA+GGG | 0.527012 | 3.2:-76845838 | MS.gene057110:CDS |
| GAATATGCTCATTGTCATCA+AGG | 0.528687 | 3.2:+76845733 | None:intergenic |
| GAAGAACACTGATTCTGTCC+AGG | 0.537074 | 3.2:+76846604 | None:intergenic |
| TCTAGGTATGGTCTTTGGTG+AGG | 0.537536 | 3.2:-76845893 | MS.gene057110:intron |
| AGTGTTTAACACCACGGAGA+TGG | 0.545954 | 3.2:-76846656 | MS.gene057110:CDS |
| ACGAATGGTTTATATTTCTG+CGG | 0.550997 | 3.2:+76845858 | None:intergenic |
| GAAATTATTGATGGAAGACC+AGG | 0.551294 | 3.2:-76843846 | MS.gene057110:CDS |
| AACTAGTACTGAAAGATTGG+AGG | 0.551568 | 3.2:-76845757 | MS.gene057110:CDS |
| AACTCATGCATCCGATCAAG+TGG | 0.554489 | 3.2:+76843675 | None:intergenic |
| TCGGCGATGGCGAAAATGAA+CGG | 0.559282 | 3.2:-76846694 | None:intergenic |
| AGACATCACAATCAACAGCC+TGG | 0.570498 | 3.2:-76846622 | MS.gene057110:CDS |
| CTAAGCATCAGGATTATTGG+TGG | 0.576552 | 3.2:-76845711 | MS.gene057110:CDS |
| TCACTTTCAGATGTCTCGGA+AGG | 0.579393 | 3.2:-76843723 | MS.gene057110:CDS |
| ACCACACACCTGCTCACGAA+TGG | 0.579553 | 3.2:+76845843 | None:intergenic |
| GAGAAGTTGATGTTAAGTCA+GGG | 0.583074 | 3.2:-76845791 | MS.gene057110:CDS |
| ATGCATGAGTTGTTGATAAG+TGG | 0.595471 | 3.2:-76843663 | MS.gene057110:CDS |
| TCGTGAGCAGGTGTGTGGTG+AGG | 0.600369 | 3.2:-76845839 | MS.gene057110:CDS |
| CACTTTCAGATGTCTCGGAA+GGG | 0.603305 | 3.2:-76843722 | MS.gene057110:CDS |
| TGATGGAAGACCAGGAACGC+TGG | 0.621740 | 3.2:-76843838 | MS.gene057110:CDS |
| TTTGTGGTAGATGTACCAGA+GGG | 0.648012 | 3.2:-76843804 | MS.gene057110:CDS |
| TTCCATCAATAATTTCTGGG+TGG | 0.663028 | 3.2:+76843853 | None:intergenic |
| ACCATTCGTGAGCAGGTGTG+TGG | 0.686863 | 3.2:-76845844 | MS.gene057110:CDS |
| CAACGGAGTGTTTAACACCA+CGG | 0.688274 | 3.2:-76846662 | MS.gene057110:CDS |
| TCCGATCAAGTGGTTCAGTG+AGG | 0.707128 | 3.2:+76843685 | None:intergenic |
| GTGAGCAGGTGTGTGGTGAG+GGG | 0.713491 | 3.2:-76845837 | MS.gene057110:CDS |
| ATGAACGGAACTGAAAACAA+CGG | 0.716623 | 3.2:-76846679 | MS.gene057110:CDS |
| TGTACCAGAGGGGAATACCA+AGG | 0.724913 | 3.2:-76843793 | MS.gene057110:CDS |
| TCTGATGTACTCCATCTCCG+TGG | 0.739793 | 3.2:+76846645 | None:intergenic |
| TTGTGGTAGATGTACCAGAG+GGG | 0.770632 | 3.2:-76843803 | MS.gene057110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTAGCTTTT+CGG | - | chr3.2:76843863-76843882 | MS.gene057110:CDS | 10.0% |
| !! | AATATAAATCAAGTAAAACA+TGG | - | chr3.2:76846284-76846303 | MS.gene057110:intron | 15.0% |
| !! | TAATAGAATCATTTAAACTA+TGG | + | chr3.2:76844109-76844128 | None:intergenic | 15.0% |
| !!! | TTTTTCAAAAATTTTACTTG+TGG | - | chr3.2:76844217-76844236 | MS.gene057110:intron | 15.0% |
| !! | AAAAATATCTGTTAAAGTGT+CGG | - | chr3.2:76845714-76845733 | MS.gene057110:CDS | 20.0% |
| !! | ATAAAATTATACACCTTGAA+AGG | + | chr3.2:76846080-76846099 | None:intergenic | 20.0% |
| !! | TATACATAATTAATCTCTGT+CGG | - | chr3.2:76844859-76844878 | MS.gene057110:intron | 20.0% |
| !! | TGTTTCATTCATATAATTGA+CGG | - | chr3.2:76844966-76844985 | MS.gene057110:intron | 20.0% |
| !!! | GTTATATGCTGTTTTTTTAA+TGG | - | chr3.2:76845580-76845599 | MS.gene057110:intron | 20.0% |
| !!! | GTTTCAAGTTTAAATTATGA+TGG | + | chr3.2:76845232-76845251 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTTAATTAAGCA+AGG | + | chr3.2:76846433-76846452 | None:intergenic | 20.0% |
| ! | AAAAAACAGCATATAACTAG+AGG | + | chr3.2:76845577-76845596 | None:intergenic | 25.0% |
| ! | AAAAACAGCATATAACTAGA+GGG | + | chr3.2:76845576-76845595 | None:intergenic | 25.0% |
| ! | AAAAATCTCTAATCCATATC+TGG | - | chr3.2:76844889-76844908 | MS.gene057110:intron | 25.0% |
| ! | AAAATCTCTAATCCATATCT+GGG | - | chr3.2:76844890-76844909 | MS.gene057110:intron | 25.0% |
| ! | AAACTATGACAGTTAATTAG+TGG | + | chr3.2:76845907-76845926 | None:intergenic | 25.0% |
| ! | AAATCAAGTAAAACATGGAA+GGG | - | chr3.2:76846289-76846308 | MS.gene057110:intron | 25.0% |
| ! | ACACGTCATTTAGTATATTT+GGG | - | chr3.2:76845116-76845135 | MS.gene057110:intron | 25.0% |
| ! | AGAATCTAGCAAATCAAAAA+CGG | + | chr3.2:76843842-76843861 | None:intergenic | 25.0% |
| ! | ATAGTAAGATTGATTACAAG+AGG | + | chr3.2:76843800-76843819 | None:intergenic | 25.0% |
| ! | CATTCTTAGCAATATATGAT+GGG | + | chr3.2:76845647-76845666 | None:intergenic | 25.0% |
| ! | GATTTATATTCCATAATCAG+AGG | + | chr3.2:76846274-76846293 | None:intergenic | 25.0% |
| ! | TAAATCAAGTAAAACATGGA+AGG | - | chr3.2:76846288-76846307 | MS.gene057110:intron | 25.0% |
| ! | TACACGTCATTTAGTATATT+TGG | - | chr3.2:76845115-76845134 | MS.gene057110:intron | 25.0% |
| ! | TCTTCCCAAAATATAAAATG+CGG | + | chr3.2:76846160-76846179 | None:intergenic | 25.0% |
| ! | TGATATTATGATGTAGAGTT+TGG | - | chr3.2:76844323-76844342 | MS.gene057110:intron | 25.0% |
| ! | TTAAGATTCCTTGAATTCTT+AGG | - | chr3.2:76845881-76845900 | MS.gene057110:CDS | 25.0% |
| ! | TTGTATTAAACCAATTCTTG+TGG | + | chr3.2:76846005-76846024 | None:intergenic | 25.0% |
| ! | TTTCAACAAAAGAGTAATGA+AGG | + | chr3.2:76844705-76844724 | None:intergenic | 25.0% |
| !! | AGCTAAAATTTTCATTGTCT+AGG | - | chr3.2:76845828-76845847 | MS.gene057110:CDS | 25.0% |
| !! | GATATTAGTTTATAGGTACA+TGG | - | chr3.2:76845368-76845387 | MS.gene057110:intron | 25.0% |
| !! | TTCTAGAGACATCATAATAT+AGG | + | chr3.2:76845951-76845970 | None:intergenic | 25.0% |
| !! | TTTGAGATTGCACTTAATTA+AGG | + | chr3.2:76846604-76846623 | None:intergenic | 25.0% |
| !!! | CTTTTAAATTTCTGGGAATT+AGG | + | chr3.2:76845496-76845515 | None:intergenic | 25.0% |
| !!! | GACAATGAAAATTTTAGCTA+CGG | + | chr3.2:76845827-76845846 | None:intergenic | 25.0% |
| !!! | GTTTTTTTTTTCCTTTCTCT+AGG | - | chr3.2:76844437-76844456 | MS.gene057110:intron | 25.0% |
| AAGGAATCTTAAAATGTCCT+TGG | + | chr3.2:76845873-76845892 | None:intergenic | 30.0% | |
| ATTCTAAGCATCAGGATTAT+TGG | - | chr3.2:76844633-76844652 | MS.gene057110:intron | 30.0% | |
| CACGTCATTTAGTATATTTG+GGG | - | chr3.2:76845117-76845136 | MS.gene057110:intron | 30.0% | |
| CCATCATATATTGCTAAGAA+TGG | - | chr3.2:76845645-76845664 | MS.gene057110:intron | 30.0% | |
| CCATTCTTAGCAATATATGA+TGG | + | chr3.2:76845648-76845667 | None:intergenic | 30.0% | |
| GACGTGTATAATAATACAAC+TGG | + | chr3.2:76845103-76845122 | None:intergenic | 30.0% | |
| GATAGAAATTTCAGAATGAG+TGG | + | chr3.2:76844747-76844766 | None:intergenic | 30.0% | |
| GATTCTACTATGTTTCTCAA+TGG | - | chr3.2:76844397-76844416 | MS.gene057110:intron | 30.0% | |
| GGTAAATTTGAAAACATGTC+TGG | - | chr3.2:76846133-76846152 | MS.gene057110:intron | 30.0% | |
| GTCTTCCATCAATAATTTCT+GGG | + | chr3.2:76846500-76846519 | None:intergenic | 30.0% | |
| TATAGGTACATGGTCAAAAT+AGG | - | chr3.2:76845378-76845397 | MS.gene057110:intron | 30.0% | |
| TCAATAATCTCTCTTCACTT+TGG | - | chr3.2:76846047-76846066 | MS.gene057110:intron | 30.0% | |
| TCATATTCAAGTATGAAGCA+CGG | + | chr3.2:76844275-76844294 | None:intergenic | 30.0% | |
| TTACCTAAAAGTAACATTCC+CGG | + | chr3.2:76846118-76846137 | None:intergenic | 30.0% | |
| TTATATTCCATAATCAGAGG+TGG | + | chr3.2:76846271-76846290 | None:intergenic | 30.0% | |
| ! | ACGAATGGTTTATATTTCTG+CGG | + | chr3.2:76844492-76844511 | None:intergenic | 30.0% |
| ! | AGACTAGGCTTTTAAATTTC+TGG | + | chr3.2:76845504-76845523 | None:intergenic | 30.0% |
| ! | GACTAGGCTTTTAAATTTCT+GGG | + | chr3.2:76845503-76845522 | None:intergenic | 30.0% |
| ! | GAGCTCTGATATTAGTTTAT+AGG | - | chr3.2:76845361-76845380 | MS.gene057110:intron | 30.0% |
| ! | TACAACTAGTACTGAAAGAT+TGG | - | chr3.2:76844587-76844606 | MS.gene057110:intron | 30.0% |
| ! | TGGTCCGCATTTTATATTTT+GGG | - | chr3.2:76846153-76846172 | MS.gene057110:intron | 30.0% |
| ! | TTATCCTTTTGTCGTTATGA+TGG | - | chr3.2:76845155-76845174 | MS.gene057110:intron | 30.0% |
| ! | TTGTTGTTAATTAAGCAAGG+TGG | + | chr3.2:76846430-76846449 | None:intergenic | 30.0% |
| !! | TATGTATATTCTGTTTCTGC+CGG | + | chr3.2:76844847-76844866 | None:intergenic | 30.0% |
| !!! | TTTTTTCCTTTCTCTAGGTA+TGG | - | chr3.2:76844442-76844461 | MS.gene057110:intron | 30.0% |
| AAAGTAGAGATCCTATGCAT+CGG | + | chr3.2:76845199-76845218 | None:intergenic | 35.0% | |
| AATATAAACCATTCGTGAGC+AGG | - | chr3.2:76844496-76844515 | MS.gene057110:intron | 35.0% | |
| AATTTCAGAATGAGTGGTTG+AGG | + | chr3.2:76844741-76844760 | None:intergenic | 35.0% | |
| AGATTGATTACAAGAGGAAC+AGG | + | chr3.2:76843794-76843813 | None:intergenic | 35.0% | |
| AGCAATTCCAATGAGAAACA+TGG | + | chr3.2:76844065-76844084 | None:intergenic | 35.0% | |
| AGTATATCCACCTCTGATTA+TGG | - | chr3.2:76846261-76846280 | MS.gene057110:intron | 35.0% | |
| ATCCGTTACCATATAACTAG+TGG | + | chr3.2:76845608-76845627 | None:intergenic | 35.0% | |
| ATGAACGGAACTGAAAACAA+CGG | - | chr3.2:76843668-76843687 | MS.gene057110:CDS | 35.0% | |
| ATGAGCATATTCTAAGCATC+AGG | - | chr3.2:76844625-76844644 | MS.gene057110:intron | 35.0% | |
| ATTAACTTTAAGCCAGCAGA+AGG | + | chr3.2:76845741-76845760 | None:intergenic | 35.0% | |
| ATTAGTGGCCTAAGAATTCA+AGG | + | chr3.2:76845892-76845911 | None:intergenic | 35.0% | |
| CAAATCACTTTCAGATGTCT+CGG | - | chr3.2:76846620-76846639 | MS.gene057110:CDS | 35.0% | |
| GAAATTATTGATGGAAGACC+AGG | - | chr3.2:76846501-76846520 | MS.gene057110:intron | 35.0% | |
| GAATATGCTCATTGTCATCA+AGG | + | chr3.2:76844617-76844636 | None:intergenic | 35.0% | |
| GCCTTAACGAAAACAATCTA+AGG | + | chr3.2:76846338-76846357 | None:intergenic | 35.0% | |
| GGTCTTCCATCAATAATTTC+TGG | + | chr3.2:76846501-76846520 | None:intergenic | 35.0% | |
| GTCATTTAGTATATTTGGGG+TGG | - | chr3.2:76845120-76845139 | MS.gene057110:intron | 35.0% | |
| GTTAAGGCTTGCACTTAATT+TGG | - | chr3.2:76846350-76846369 | MS.gene057110:intron | 35.0% | |
| TAAATGATGCGAGAAAGAAG+TGG | - | chr3.2:76846192-76846211 | MS.gene057110:intron | 35.0% | |
| TCAGATAGCATGAGAATGAA+AGG | + | chr3.2:76846238-76846257 | None:intergenic | 35.0% | |
| TCCGTTACCATATAACTAGT+GGG | + | chr3.2:76845607-76845626 | None:intergenic | 35.0% | |
| TCTATTAGTTCGTTGCTTGA+GGG | - | chr3.2:76844934-76844953 | MS.gene057110:intron | 35.0% | |
| TTCAACCAATTGTCAAACCA+AGG | - | chr3.2:76845853-76845872 | MS.gene057110:CDS | 35.0% | |
| TTGTTAATTAAGCAAGGTGG+AGG | + | chr3.2:76846427-76846446 | None:intergenic | 35.0% | |
| ! | AACTAGTACTGAAAGATTGG+AGG | - | chr3.2:76844590-76844609 | MS.gene057110:intron | 35.0% |
| ! | AATGTCCTTGGTTTGACAAT+TGG | + | chr3.2:76845861-76845880 | None:intergenic | 35.0% |
| ! | ATATGATGGGAAACAGTGTT+AGG | + | chr3.2:76845634-76845653 | None:intergenic | 35.0% |
| ! | ATCAATAATTTCTGGGTGGA+GGG | + | chr3.2:76846493-76846512 | None:intergenic | 35.0% |
| ! | ATGCATGAGTTGTTGATAAG+TGG | - | chr3.2:76846684-76846703 | MS.gene057110:CDS | 35.0% |
| ! | CTGGTCCGCATTTTATATTT+TGG | - | chr3.2:76846152-76846171 | MS.gene057110:intron | 35.0% |
| ! | GCCTTAGATTGTTTTCGTTA+AGG | - | chr3.2:76846334-76846353 | MS.gene057110:intron | 35.0% |
| ! | GCTGGTAATTGAATCTTTTG+TGG | - | chr3.2:76846527-76846546 | MS.gene057110:intron | 35.0% |
| ! | TCATGTGCATCGTTTTACAA+AGG | - | chr3.2:76845691-76845710 | MS.gene057110:intron | 35.0% |
| ! | TCTAAGGCAATATTGAGTCT+AGG | + | chr3.2:76846322-76846341 | None:intergenic | 35.0% |
| ! | TTCCATCAATAATTTCTGGG+TGG | + | chr3.2:76846497-76846516 | None:intergenic | 35.0% |
| ! | TTTAGTATATTTGGGGTGGA+AGG | - | chr3.2:76845124-76845143 | MS.gene057110:intron | 35.0% |
| !! | AAGAGAGATTATTGACTCAG+AGG | + | chr3.2:76846042-76846061 | None:intergenic | 35.0% |
| !! | AGAGAAGTTGATGTTAAGTC+AGG | - | chr3.2:76844555-76844574 | MS.gene057110:intron | 35.0% |
| !! | GAGAAGTTGATGTTAAGTCA+GGG | - | chr3.2:76844556-76844575 | MS.gene057110:intron | 35.0% |
| !! | TTATTGACTCAGAGGAATCT+TGG | + | chr3.2:76846034-76846053 | None:intergenic | 35.0% |
| !!! | AGTTTTACATGGACTAGACT+AGG | + | chr3.2:76845519-76845538 | None:intergenic | 35.0% |
| !!! | GCTGGTTAGTTAGTTTTACA+TGG | + | chr3.2:76845530-76845549 | None:intergenic | 35.0% |
| ACCAGAAGAACCAAACATCA+AGG | + | chr3.2:76845788-76845807 | None:intergenic | 40.0% | |
| ACTTATCAGTTGAGCAAGCA+TGG | + | chr3.2:76845294-76845313 | None:intergenic | 40.0% | |
| AGTGCTTAAGCCACAAGAAT+TGG | - | chr3.2:76845992-76846011 | MS.gene057110:intron | 40.0% | |
| ATGTAATTCGCATGTGTCAG+TGG | + | chr3.2:76844184-76844203 | None:intergenic | 40.0% | |
| CAAAGACCATACCTAGAGAA+AGG | + | chr3.2:76844451-76844470 | None:intergenic | 40.0% | |
| CAGTATCAACATCCCAGATA+TGG | + | chr3.2:76844905-76844924 | None:intergenic | 40.0% | |
| CCCCACTAGTTATATGGTAA+CGG | - | chr3.2:76845603-76845622 | MS.gene057110:intron | 40.0% | |
| CCGTTACCATATAACTAGTG+GGG | + | chr3.2:76845606-76845625 | None:intergenic | 40.0% | |
| CTAAGCATCAGGATTATTGG+TGG | - | chr3.2:76844636-76844655 | MS.gene057110:intron | 40.0% | |
| CTCCACCCAGAAATTATTGA+TGG | - | chr3.2:76846492-76846511 | MS.gene057110:intron | 40.0% | |
| CTCTTAAACTCCCAATCTCA+AGG | + | chr3.2:76844539-76844558 | None:intergenic | 40.0% | |
| CTTGCCATCATAACGACAAA+AGG | + | chr3.2:76845162-76845181 | None:intergenic | 40.0% | |
| CTTTCAGTACTAGTTGTAGC+AGG | + | chr3.2:76844585-76844604 | None:intergenic | 40.0% | |
| CTTTCTCTAGGTATGGTCTT+TGG | - | chr3.2:76844449-76844468 | MS.gene057110:intron | 40.0% | |
| GATTCTGCCATGTTTCTCAT+TGG | - | chr3.2:76844055-76844074 | MS.gene057110:intron | 40.0% | |
| GGATGTTGATACTGTTAGGA+AGG | - | chr3.2:76844911-76844930 | MS.gene057110:intron | 40.0% | |
| GGTACATGGTCAAAATAGGA+AGG | - | chr3.2:76845382-76845401 | MS.gene057110:intron | 40.0% | |
| GTCTATTAGTTCGTTGCTTG+AGG | - | chr3.2:76844933-76844952 | MS.gene057110:intron | 40.0% | |
| GTGAGATTGCATGCAATATG+TGG | + | chr3.2:76844769-76844788 | None:intergenic | 40.0% | |
| GTGTAAGATACACATTGCAC+CGG | - | chr3.2:76844825-76844844 | MS.gene057110:intron | 40.0% | |
| TAAGGCTTCAACAAAGTAGC+AGG | + | chr3.2:76846586-76846605 | None:intergenic | 40.0% | |
| TAATGGCCCCACTAGTTATA+TGG | - | chr3.2:76845597-76845616 | MS.gene057110:intron | 40.0% | |
| TATGATGTAGAGTTTGGCTG+TGG | - | chr3.2:76844329-76844348 | MS.gene057110:intron | 40.0% | |
| TCGACAAGTTCCTTGATGTT+TGG | - | chr3.2:76845775-76845794 | MS.gene057110:CDS | 40.0% | |
| TGGCTAGAGCTTATACTACT+CGG | + | chr3.2:76845083-76845102 | None:intergenic | 40.0% | |
| TTAATTAAGCAAGGTGGAGG+AGG | + | chr3.2:76846424-76846443 | None:intergenic | 40.0% | |
| TTCTTGTGGCTTAAGCACTT+AGG | + | chr3.2:76845991-76846010 | None:intergenic | 40.0% | |
| TTTGTGGTAGATGTACCAGA+GGG | - | chr3.2:76846543-76846562 | MS.gene057110:intron | 40.0% | |
| ! | ACGCATTTCATCAGAAGTGT+CGG | + | chr3.2:76844132-76844151 | None:intergenic | 40.0% |
| ! | CATCAATAATTTCTGGGTGG+AGG | + | chr3.2:76846494-76846513 | None:intergenic | 40.0% |
| ! | CTTTGGAGATGTTCCTTTCA+AGG | - | chr3.2:76846064-76846083 | MS.gene057110:intron | 40.0% |
| ! | GCTTAAGCACTTAGGCTTTT+GGG | + | chr3.2:76845983-76846002 | None:intergenic | 40.0% |
| ! | TCTGGGATGTTGATACTGTT+AGG | - | chr3.2:76844907-76844926 | MS.gene057110:intron | 40.0% |
| ! | TTTTGTGGTAGATGTACCAG+AGG | - | chr3.2:76846542-76846561 | MS.gene057110:intron | 40.0% |
| !! | GCACTGACACTTTTAATGGA+AGG | - | chr3.2:76843914-76843933 | MS.gene057110:intron | 40.0% |
| !! | GGATTATTGGTGGTGATCAT+AGG | - | chr3.2:76844646-76844665 | MS.gene057110:intron | 40.0% |
| !! | TCCATTAAAAGTGTCAGTGC+TGG | + | chr3.2:76843914-76843933 | None:intergenic | 40.0% |
| !! | TCCTTGATGTTTGGTTCTTC+TGG | - | chr3.2:76845784-76845803 | MS.gene057110:CDS | 40.0% |
| !!! | TCCAGCACTGACACTTTTAA+TGG | - | chr3.2:76843910-76843929 | MS.gene057110:intron | 40.0% |
| !!! | TGTCCGGGAATGTTACTTTT+AGG | - | chr3.2:76846112-76846131 | MS.gene057110:intron | 40.0% |
| AAAGTAGCAGGTCTCATCCT+TGG | + | chr3.2:76846574-76846593 | None:intergenic | 45.0% | |
| AACTCATGCATCCGATCAAG+TGG | + | chr3.2:76846675-76846694 | None:intergenic | 45.0% | |
| ACCTCACTGAACCACTTGAT+CGG | - | chr3.2:76846661-76846680 | MS.gene057110:CDS | 45.0% | |
| AGACATCACAATCAACAGCC+TGG | - | chr3.2:76843725-76843744 | MS.gene057110:CDS | 45.0% | |
| AGTGTTTAACACCACGGAGA+TGG | - | chr3.2:76843691-76843710 | MS.gene057110:CDS | 45.0% | |
| ATGCATCGGAAACAAGTACC+AGG | + | chr3.2:76845185-76845204 | None:intergenic | 45.0% | |
| CACTTTCAGATGTCTCGGAA+GGG | - | chr3.2:76846625-76846644 | MS.gene057110:CDS | 45.0% | |
| CTTCTGATGAAATGCGTGTC+TGG | - | chr3.2:76844135-76844154 | MS.gene057110:intron | 45.0% | |
| GAGATGCAGTGAAAGTTTGC+AGG | + | chr3.2:76845254-76845273 | None:intergenic | 45.0% | |
| GAGCTCAGATCTTTGAGCTA+TGG | + | chr3.2:76845347-76845366 | None:intergenic | 45.0% | |
| GATTCAATTACCAGCGTTCC+TGG | + | chr3.2:76846522-76846541 | None:intergenic | 45.0% | |
| GGTACTTGTTTCCGATGCAT+AGG | - | chr3.2:76845185-76845204 | MS.gene057110:intron | 45.0% | |
| TCACTTTCAGATGTCTCGGA+AGG | - | chr3.2:76846624-76846643 | MS.gene057110:CDS | 45.0% | |
| TCTAGGTATGGTCTTTGGTG+AGG | - | chr3.2:76844454-76844473 | MS.gene057110:intron | 45.0% | |
| TGAGGGGAAACCTTGAGATT+GGG | - | chr3.2:76844526-76844545 | MS.gene057110:intron | 45.0% | |
| TTATTCCCGAGAACACTGTC+CGG | - | chr3.2:76846096-76846115 | MS.gene057110:intron | 45.0% | |
| TTGTGGTAGATGTACCAGAG+GGG | - | chr3.2:76846544-76846563 | MS.gene057110:intron | 45.0% | |
| ! | CAACGGAGTGTTTAACACCA+CGG | - | chr3.2:76843685-76843704 | MS.gene057110:CDS | 45.0% |
| ! | GGCTTAAGCACTTAGGCTTT+TGG | + | chr3.2:76845984-76846003 | None:intergenic | 45.0% |
| ! | TGGTGGTGATCATAGGCTTA+GGG | - | chr3.2:76844653-76844672 | MS.gene057110:intron | 45.0% |
| !! | GAAGAACACTGATTCTGTCC+AGG | + | chr3.2:76843746-76843765 | None:intergenic | 45.0% |
| !! | TTGGTGGTGATCATAGGCTT+AGG | - | chr3.2:76844652-76844671 | MS.gene057110:intron | 45.0% |
| ACATTCCCGGACAGTGTTCT+CGG | + | chr3.2:76846105-76846124 | None:intergenic | 50.0% | |
| ACCAGCTCACTGCTACACTT+AGG | - | chr3.2:76845544-76845563 | MS.gene057110:intron | 50.0% | |
| ACCTAAGTGTAGCAGTGAGC+TGG | + | chr3.2:76845548-76845567 | None:intergenic | 50.0% | |
| AGGTATGGTCTTTGGTGAGG+AGG | - | chr3.2:76844457-76844476 | MS.gene057110:intron | 50.0% | |
| ATGAAGCACGGCACATACAC+TGG | + | chr3.2:76844263-76844282 | None:intergenic | 50.0% | |
| ATTAAGCAAGGTGGAGGAGG+AGG | + | chr3.2:76846421-76846440 | None:intergenic | 50.0% | |
| GTGAGGGGAAACCTTGAGAT+TGG | - | chr3.2:76844525-76844544 | MS.gene057110:intron | 50.0% | |
| TATTCCCGAGAACACTGTCC+GGG | - | chr3.2:76846097-76846116 | MS.gene057110:intron | 50.0% | |
| TCATCCTTGGTATTCCCCTC+TGG | + | chr3.2:76846561-76846580 | None:intergenic | 50.0% | |
| TCCGATCAAGTGGTTCAGTG+AGG | + | chr3.2:76846665-76846684 | None:intergenic | 50.0% | |
| TCTGATGTACTCCATCTCCG+TGG | + | chr3.2:76843705-76843724 | None:intergenic | 50.0% | |
| TGGAAGACACCAACACGTGT+CGG | + | chr3.2:76844164-76844183 | None:intergenic | 50.0% | |
| TGTACCAGAGGGGAATACCA+AGG | - | chr3.2:76846554-76846573 | MS.gene057110:intron | 50.0% | |
| TGTCGTTATGATGGCAAGCC+TGG | - | chr3.2:76845164-76845183 | MS.gene057110:intron | 50.0% | |
| !! | TAAAGTGTCGGTCCTTCTGC+TGG | - | chr3.2:76845726-76845745 | MS.gene057110:CDS | 50.0% |
| ACCACACACCTGCTCACGAA+TGG | + | chr3.2:76844507-76844526 | None:intergenic | 55.0% | |
| ACCATTCGTGAGCAGGTGTG+TGG | - | chr3.2:76844503-76844522 | MS.gene057110:intron | 55.0% | |
| CATTCCCGGACAGTGTTCTC+GGG | + | chr3.2:76846104-76846123 | None:intergenic | 55.0% | |
| GTCTGGTATCCGACACGTGT+TGG | - | chr3.2:76844152-76844171 | MS.gene057110:intron | 55.0% | |
| TGATGGAAGACCAGGAACGC+TGG | - | chr3.2:76846509-76846528 | MS.gene057110:intron | 55.0% | |
| CGTGAGCAGGTGTGTGGTGA+GGG | - | chr3.2:76844509-76844528 | MS.gene057110:intron | 60.0% | |
| GTGAGCAGGTGTGTGGTGAG+GGG | - | chr3.2:76844510-76844529 | MS.gene057110:intron | 60.0% | |
| TCGTGAGCAGGTGTGTGGTG+AGG | - | chr3.2:76844508-76844527 | MS.gene057110:intron | 60.0% | |
| ! | CTCGGAAGGGCATGCTGTGC+AGG | - | chr3.2:76846638-76846657 | MS.gene057110:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 76843659 | 76846710 | 76843659 | ID=MS.gene057110 |
| chr3.2 | mRNA | 76843659 | 76846710 | 76843659 | ID=MS.gene057110.t1;Parent=MS.gene057110 |
| chr3.2 | exon | 76846567 | 76846710 | 76846567 | ID=MS.gene057110.t1.exon1;Parent=MS.gene057110.t1 |
| chr3.2 | CDS | 76846567 | 76846710 | 76846567 | ID=cds.MS.gene057110.t1;Parent=MS.gene057110.t1 |
| chr3.2 | exon | 76845695 | 76845910 | 76845695 | ID=MS.gene057110.t1.exon2;Parent=MS.gene057110.t1 |
| chr3.2 | CDS | 76845695 | 76845910 | 76845695 | ID=cds.MS.gene057110.t1;Parent=MS.gene057110.t1 |
| chr3.2 | exon | 76843659 | 76843898 | 76843659 | ID=MS.gene057110.t1.exon3;Parent=MS.gene057110.t1 |
| chr3.2 | CDS | 76843659 | 76843898 | 76843659 | ID=cds.MS.gene057110.t1;Parent=MS.gene057110.t1 |
| Gene Sequence |
| Protein sequence |
