Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057109.t1 | XP_003602205.1 | 98.5 | 199 | 3 | 0 | 1 | 199 | 1 | 199 | 1.50E-108 | 402.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057109.t1 | Q9FGM1 | 79.3 | 184 | 34 | 1 | 8 | 187 | 2 | 185 | 9.4e-80 | 297.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057109.t1 | G7J6S4 | 98.5 | 199 | 3 | 0 | 1 | 199 | 1 | 199 | 1.1e-108 | 402.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050384 | MS.gene057109 | 0.826441 | 2.71E-54 | -1.69E-46 |
| MS.gene050386 | MS.gene057109 | 0.832172 | 1.10E-55 | -1.69E-46 |
| MS.gene057108 | MS.gene057109 | 0.993764 | 4.69E-202 | -1.69E-46 |
| MS.gene057109 | MS.gene057110 | 0.993923 | 3.15E-203 | -1.69E-46 |
| MS.gene057109 | MS.gene061958 | 0.800073 | 1.71E-48 | -1.69E-46 |
| MS.gene057109 | MS.gene066067 | 0.81204 | 5.18E-51 | -1.69E-46 |
| MS.gene057109 | MS.gene066342 | 0.807606 | 4.66E-50 | -1.69E-46 |
| MS.gene057109 | MS.gene06744 | 0.991184 | 2.54E-186 | -1.69E-46 |
| MS.gene057109 | MS.gene06745 | 0.994724 | 1.18E-209 | -1.69E-46 |
| MS.gene057109 | MS.gene067635 | 0.814453 | 1.53E-51 | -1.69E-46 |
| MS.gene057109 | MS.gene068166 | 0.816216 | 6.20E-52 | -1.69E-46 |
| MS.gene057109 | MS.gene072808 | 0.803236 | 3.84E-49 | -1.69E-46 |
| MS.gene057109 | MS.gene23256 | 0.811673 | 6.22E-51 | -1.69E-46 |
| MS.gene057109 | MS.gene23484 | 0.832291 | 1.03E-55 | -1.69E-46 |
| MS.gene057109 | MS.gene24924 | 0.800845 | 1.19E-48 | -1.69E-46 |
| MS.gene057109 | MS.gene34115 | 0.8041 | 2.54E-49 | -1.69E-46 |
| MS.gene057109 | MS.gene35436 | 0.826051 | 3.35E-54 | -1.69E-46 |
| MS.gene057109 | MS.gene46376 | 0.812148 | 4.90E-51 | -1.69E-46 |
| MS.gene057109 | MS.gene47818 | 0.813809 | 2.12E-51 | -1.69E-46 |
| MS.gene057109 | MS.gene50027 | 0.807842 | 4.15E-50 | -1.69E-46 |
| MS.gene057109 | MS.gene53935 | 0.823532 | 1.32E-53 | -1.69E-46 |
| MS.gene057109 | MS.gene60300 | 0.807747 | 4.35E-50 | -1.69E-46 |
| MS.gene057109 | MS.gene61239 | 0.802263 | 6.10E-49 | -1.69E-46 |
| MS.gene057109 | MS.gene63673 | 0.826915 | 2.09E-54 | -1.69E-46 |
| MS.gene057109 | MS.gene67082 | 0.808786 | 2.61E-50 | -1.69E-46 |
| MS.gene057109 | MS.gene81239 | 0.831754 | 1.40E-55 | -1.69E-46 |
| MS.gene057109 | MS.gene85109 | 0.829334 | 5.46E-55 | -1.69E-46 |
| MS.gene057109 | MS.gene85111 | 0.804624 | 1.98E-49 | -1.69E-46 |
| MS.gene057109 | MS.gene96510 | 0.803707 | 3.07E-49 | -1.69E-46 |
| MS.gene057109 | MS.gene99465 | 0.807524 | 4.85E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene86009 | MS.gene057109 | PPI |
| MS.gene057109 | MS.gene59569 | PPI |
| MS.gene057109 | MS.gene95282 | PPI |
| MS.gene79764 | MS.gene057109 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057109.t1 | MTR_3g090980 | 98.492 | 199 | 3 | 0 | 1 | 199 | 1 | 199 | 1.96e-147 | 407 |
| MS.gene057109.t1 | MTR_1g028380 | 86.842 | 190 | 24 | 1 | 4 | 192 | 1 | 190 | 1.21e-122 | 344 |
| MS.gene057109.t1 | MTR_8g027805 | 75.269 | 186 | 45 | 1 | 5 | 190 | 3 | 187 | 3.15e-103 | 295 |
| MS.gene057109.t1 | MTR_3g071740 | 53.012 | 166 | 73 | 4 | 15 | 178 | 60 | 222 | 6.25e-59 | 184 |
| MS.gene057109.t1 | MTR_5g083270 | 52.147 | 163 | 72 | 3 | 19 | 178 | 44 | 203 | 9.05e-57 | 178 |
| MS.gene057109.t1 | MTR_7g070050 | 55.491 | 173 | 71 | 3 | 15 | 181 | 7 | 179 | 1.61e-55 | 174 |
| MS.gene057109.t1 | MTR_4g014460 | 45.455 | 176 | 91 | 2 | 8 | 178 | 32 | 207 | 6.86e-53 | 169 |
| MS.gene057109.t1 | MTR_1g016480 | 46.471 | 170 | 82 | 3 | 16 | 177 | 28 | 196 | 1.42e-52 | 167 |
| MS.gene057109.t1 | MTR_5g030500 | 48.795 | 166 | 78 | 3 | 20 | 179 | 43 | 207 | 1.08e-49 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057109.t1 | AT5G53160 | 79.348 | 184 | 34 | 1 | 8 | 187 | 2 | 185 | 2.20e-105 | 301 |
| MS.gene057109.t1 | AT1G01360 | 74.317 | 183 | 45 | 1 | 5 | 187 | 7 | 187 | 2.18e-98 | 283 |
| MS.gene057109.t1 | AT4G27920 | 71.591 | 176 | 45 | 2 | 4 | 178 | 1 | 172 | 2.49e-92 | 268 |
| MS.gene057109.t1 | AT4G01026 | 69.945 | 183 | 53 | 1 | 7 | 189 | 11 | 191 | 4.65e-90 | 263 |
| MS.gene057109.t1 | AT5G53160 | 75.214 | 117 | 25 | 1 | 8 | 120 | 2 | 118 | 5.66e-60 | 185 |
| MS.gene057109.t1 | AT2G40330 | 48.171 | 164 | 81 | 2 | 19 | 178 | 46 | 209 | 3.39e-53 | 169 |
| MS.gene057109.t1 | AT5G05440 | 50.633 | 158 | 73 | 3 | 19 | 174 | 43 | 197 | 3.89e-53 | 169 |
| MS.gene057109.t1 | AT2G38310 | 53.374 | 163 | 71 | 2 | 23 | 183 | 41 | 200 | 4.16e-53 | 169 |
| MS.gene057109.t1 | AT2G26040 | 45.238 | 168 | 87 | 3 | 21 | 184 | 22 | 188 | 4.45e-51 | 163 |
| MS.gene057109.t1 | AT4G17870 | 47.853 | 163 | 83 | 1 | 21 | 181 | 17 | 179 | 4.02e-48 | 155 |
| MS.gene057109.t1 | AT1G73000 | 41.176 | 170 | 89 | 2 | 21 | 179 | 37 | 206 | 1.25e-43 | 145 |
| MS.gene057109.t1 | AT5G45870 | 51.007 | 149 | 70 | 2 | 31 | 178 | 7 | 153 | 9.28e-40 | 133 |
| MS.gene057109.t1 | AT5G46790 | 46.341 | 164 | 83 | 2 | 21 | 179 | 44 | 207 | 1.12e-39 | 135 |
| MS.gene057109.t1 | AT5G46790 | 46.341 | 164 | 83 | 2 | 21 | 179 | 44 | 207 | 1.12e-39 | 135 |
| MS.gene057109.t1 | AT5G45860 | 49.383 | 162 | 73 | 3 | 18 | 178 | 1 | 154 | 1.08e-38 | 130 |
| MS.gene057109.t1 | AT4G18620 | 44.025 | 159 | 82 | 1 | 27 | 178 | 2 | 160 | 1.88e-35 | 122 |
Find 57 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCTTCCATCAATAATTTC+TGG | 0.156182 | 3.2:+76816841 | None:intergenic |
| CTTTCTCTAGGTATGGTCTT+TGG | 0.253746 | 3.2:-76818890 | MS.gene057109:intron |
| TTTGAGATTGCACTTAATTA+AGG | 0.261510 | 3.2:+76816738 | None:intergenic |
| ATTCTAAGCATCAGGATTAT+TGG | 0.270575 | 3.2:-76818706 | MS.gene057109:CDS |
| GTCTTCCATCAATAATTTCT+GGG | 0.334881 | 3.2:+76816842 | None:intergenic |
| GATTCAATTACCAGCGTTCC+TGG | 0.351242 | 3.2:+76816820 | None:intergenic |
| GGATTATTGGTGGTGATCAT+AGG | 0.376992 | 3.2:-76818693 | MS.gene057109:CDS |
| CTCGGAAGGGCATGCTGTGC+AGG | 0.389173 | 3.2:-76816701 | MS.gene057109:CDS |
| AGAGAAGTTGATGTTAAGTC+AGG | 0.400572 | 3.2:-76818784 | MS.gene057109:CDS |
| CTCCACCCAGAAATTATTGA+TGG | 0.415182 | 3.2:-76816847 | MS.gene057109:CDS |
| AGATTGATTACAAGAGGAAC+AGG | 0.418165 | 3.2:+76819548 | None:intergenic |
| TTGGTGGTGATCATAGGCTT+AGG | 0.430017 | 3.2:-76818687 | MS.gene057109:CDS |
| GTGAGGGGAAACCTTGAGAT+TGG | 0.441356 | 3.2:-76818814 | MS.gene057109:CDS |
| TCATCCTTGGTATTCCCCTC+TGG | 0.450075 | 3.2:+76816781 | None:intergenic |
| ATGAGCATATTCTAAGCATC+AGG | 0.464677 | 3.2:-76818714 | MS.gene057109:CDS |
| TACAACTAGTACTGAAAGAT+TGG | 0.468120 | 3.2:-76818752 | MS.gene057109:CDS |
| AATATAAACCATTCGTGAGC+AGG | 0.468294 | 3.2:-76818843 | MS.gene057109:CDS |
| CATCAATAATTTCTGGGTGG+AGG | 0.490844 | 3.2:+76816848 | None:intergenic |
| TGGTGGTGATCATAGGCTTA+GGG | 0.497834 | 3.2:-76818686 | MS.gene057109:intron |
| ATCAATAATTTCTGGGTGGA+GGG | 0.509205 | 3.2:+76816849 | None:intergenic |
| CTTTCAGTACTAGTTGTAGC+AGG | 0.511083 | 3.2:+76818757 | None:intergenic |
| TAAGGCTTCAACAAAGTAGC+AGG | 0.515776 | 3.2:+76816756 | None:intergenic |
| CAAATCACTTTCAGATGTCT+CGG | 0.517164 | 3.2:-76816719 | MS.gene057109:CDS |
| AGGTATGGTCTTTGGTGAGG+AGG | 0.517669 | 3.2:-76818882 | MS.gene057109:CDS |
| ACCTCACTGAACCACTTGAT+CGG | 0.518102 | 3.2:-76816678 | MS.gene057109:CDS |
| CTCTTAAACTCCCAATCTCA+AGG | 0.524215 | 3.2:+76818803 | None:intergenic |
| AAAGTAGCAGGTCTCATCCT+TGG | 0.524327 | 3.2:+76816768 | None:intergenic |
| TGAGGGGAAACCTTGAGATT+GGG | 0.526415 | 3.2:-76818813 | MS.gene057109:CDS |
| CGTGAGCAGGTGTGTGGTGA+GGG | 0.527012 | 3.2:-76818830 | MS.gene057109:CDS |
| GAATATGCTCATTGTCATCA+AGG | 0.528687 | 3.2:+76818725 | None:intergenic |
| GAAGAACACTGATTCTGTCC+AGG | 0.537074 | 3.2:+76819596 | None:intergenic |
| TCTAGGTATGGTCTTTGGTG+AGG | 0.537536 | 3.2:-76818885 | MS.gene057109:intron |
| AGTGTTTAACACCACGGAGA+TGG | 0.545954 | 3.2:-76819648 | MS.gene057109:CDS |
| ACGAATGGTTTATATTTCTG+CGG | 0.550997 | 3.2:+76818850 | None:intergenic |
| GAAATTATTGATGGAAGACC+AGG | 0.551294 | 3.2:-76816838 | MS.gene057109:CDS |
| AACTAGTACTGAAAGATTGG+AGG | 0.551568 | 3.2:-76818749 | MS.gene057109:CDS |
| AACTCATGCATCCGATCAAG+TGG | 0.554489 | 3.2:+76816667 | None:intergenic |
| TCGGCGATGGCGAAAATGAA+CGG | 0.559282 | 3.2:-76819686 | None:intergenic |
| AGACATCACAATCAACAGCC+TGG | 0.570498 | 3.2:-76819614 | MS.gene057109:CDS |
| CTAAGCATCAGGATTATTGG+TGG | 0.576552 | 3.2:-76818703 | MS.gene057109:CDS |
| TCACTTTCAGATGTCTCGGA+AGG | 0.579393 | 3.2:-76816715 | MS.gene057109:CDS |
| ACCACACACCTGCTCACGAA+TGG | 0.579553 | 3.2:+76818835 | None:intergenic |
| GAGAAGTTGATGTTAAGTCA+GGG | 0.583074 | 3.2:-76818783 | MS.gene057109:CDS |
| ATGCATGAGTTGTTGATAAG+TGG | 0.595471 | 3.2:-76816655 | MS.gene057109:CDS |
| TCGTGAGCAGGTGTGTGGTG+AGG | 0.600369 | 3.2:-76818831 | MS.gene057109:CDS |
| CACTTTCAGATGTCTCGGAA+GGG | 0.603305 | 3.2:-76816714 | MS.gene057109:CDS |
| TGATGGAAGACCAGGAACGC+TGG | 0.621740 | 3.2:-76816830 | MS.gene057109:CDS |
| TTTGTGGTAGATGTACCAGA+GGG | 0.648012 | 3.2:-76816796 | MS.gene057109:CDS |
| TTCCATCAATAATTTCTGGG+TGG | 0.663028 | 3.2:+76816845 | None:intergenic |
| ACCATTCGTGAGCAGGTGTG+TGG | 0.686863 | 3.2:-76818836 | MS.gene057109:CDS |
| CAACGGAGTGTTTAACACCA+CGG | 0.688274 | 3.2:-76819654 | MS.gene057109:CDS |
| TCCGATCAAGTGGTTCAGTG+AGG | 0.707128 | 3.2:+76816677 | None:intergenic |
| GTGAGCAGGTGTGTGGTGAG+GGG | 0.713491 | 3.2:-76818829 | MS.gene057109:CDS |
| ATGAACGGAACTGAAAACAA+CGG | 0.716623 | 3.2:-76819671 | MS.gene057109:CDS |
| TGTACCAGAGGGGAATACCA+AGG | 0.724913 | 3.2:-76816785 | MS.gene057109:CDS |
| TCTGATGTACTCCATCTCCG+TGG | 0.739793 | 3.2:+76819637 | None:intergenic |
| TTGTGGTAGATGTACCAGAG+GGG | 0.770632 | 3.2:-76816795 | MS.gene057109:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTAGCTTTT+CGG | - | chr3.2:76816855-76816874 | MS.gene057109:CDS | 10.0% |
| !! | AATATAAATCAAGTAAAACA+TGG | - | chr3.2:76819276-76819295 | MS.gene057109:intron | 15.0% |
| !! | TAATAGAATCATTTAAACTA+TGG | + | chr3.2:76817101-76817120 | None:intergenic | 15.0% |
| !!! | TTTTTCAAAAATTTTACTTG+TGG | - | chr3.2:76817209-76817228 | MS.gene057109:intron | 15.0% |
| !! | AAAAATATCTGTTAAAGTGT+CGG | - | chr3.2:76818706-76818725 | MS.gene057109:CDS | 20.0% |
| !! | ATAAAATTATACACCTTGAA+AGG | + | chr3.2:76819072-76819091 | None:intergenic | 20.0% |
| !! | TATACATAATTAATCTCTGT+CGG | - | chr3.2:76817851-76817870 | MS.gene057109:intron | 20.0% |
| !! | TGTTTCATTCATATAATTGA+CGG | - | chr3.2:76817958-76817977 | MS.gene057109:intron | 20.0% |
| !!! | GTTATATGCTGTTTTTTTAA+TGG | - | chr3.2:76818572-76818591 | MS.gene057109:intron | 20.0% |
| !!! | GTTTCAAGTTTAAATTATGA+TGG | + | chr3.2:76818224-76818243 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTTAATTAAGCA+AGG | + | chr3.2:76819425-76819444 | None:intergenic | 20.0% |
| ! | AAAAAACAGCATATAACTAG+AGG | + | chr3.2:76818569-76818588 | None:intergenic | 25.0% |
| ! | AAAAACAGCATATAACTAGA+GGG | + | chr3.2:76818568-76818587 | None:intergenic | 25.0% |
| ! | AAAAATCTCTAATCCATATC+TGG | - | chr3.2:76817881-76817900 | MS.gene057109:intron | 25.0% |
| ! | AAAATCTCTAATCCATATCT+GGG | - | chr3.2:76817882-76817901 | MS.gene057109:intron | 25.0% |
| ! | AAACTATGACAGTTAATTAG+TGG | + | chr3.2:76818899-76818918 | None:intergenic | 25.0% |
| ! | AAATCAAGTAAAACATGGAA+GGG | - | chr3.2:76819281-76819300 | MS.gene057109:intron | 25.0% |
| ! | ACACGTCATTTAGTATATTT+GGG | - | chr3.2:76818108-76818127 | MS.gene057109:intron | 25.0% |
| ! | AGAATCTAGCAAATCAAAAA+CGG | + | chr3.2:76816834-76816853 | None:intergenic | 25.0% |
| ! | ATAGTAAGATTGATTACAAG+AGG | + | chr3.2:76816792-76816811 | None:intergenic | 25.0% |
| ! | CATTCTTAGCAATATATGAT+GGG | + | chr3.2:76818639-76818658 | None:intergenic | 25.0% |
| ! | GATTTATATTCCATAATCAG+AGG | + | chr3.2:76819266-76819285 | None:intergenic | 25.0% |
| ! | TAAATCAAGTAAAACATGGA+AGG | - | chr3.2:76819280-76819299 | MS.gene057109:intron | 25.0% |
| ! | TACACGTCATTTAGTATATT+TGG | - | chr3.2:76818107-76818126 | MS.gene057109:intron | 25.0% |
| ! | TCTTCCCAAAATATAAAATG+CGG | + | chr3.2:76819152-76819171 | None:intergenic | 25.0% |
| ! | TGATATTATGATGTAGAGTT+TGG | - | chr3.2:76817315-76817334 | MS.gene057109:intron | 25.0% |
| ! | TTAAGATTCCTTGAATTCTT+AGG | - | chr3.2:76818873-76818892 | MS.gene057109:CDS | 25.0% |
| ! | TTGTATTAAACCAATTCTTG+TGG | + | chr3.2:76818997-76819016 | None:intergenic | 25.0% |
| ! | TTTCAACAAAAGAGTAATGA+AGG | + | chr3.2:76817697-76817716 | None:intergenic | 25.0% |
| !! | AGCTAAAATTTTCATTGTCT+AGG | - | chr3.2:76818820-76818839 | MS.gene057109:CDS | 25.0% |
| !! | GATATTAGTTTATAGGTACA+TGG | - | chr3.2:76818360-76818379 | MS.gene057109:intron | 25.0% |
| !! | TTCTAGAGACATCATAATAT+AGG | + | chr3.2:76818943-76818962 | None:intergenic | 25.0% |
| !! | TTTGAGATTGCACTTAATTA+AGG | + | chr3.2:76819596-76819615 | None:intergenic | 25.0% |
| !!! | CTTTTAAATTTCTGGGAATT+AGG | + | chr3.2:76818488-76818507 | None:intergenic | 25.0% |
| !!! | GACAATGAAAATTTTAGCTA+CGG | + | chr3.2:76818819-76818838 | None:intergenic | 25.0% |
| !!! | GTTTTTTTTTTCCTTTCTCT+AGG | - | chr3.2:76817429-76817448 | MS.gene057109:intron | 25.0% |
| AAGGAATCTTAAAATGTCCT+TGG | + | chr3.2:76818865-76818884 | None:intergenic | 30.0% | |
| ATTCTAAGCATCAGGATTAT+TGG | - | chr3.2:76817625-76817644 | MS.gene057109:intron | 30.0% | |
| CACGTCATTTAGTATATTTG+GGG | - | chr3.2:76818109-76818128 | MS.gene057109:intron | 30.0% | |
| CCATCATATATTGCTAAGAA+TGG | - | chr3.2:76818637-76818656 | MS.gene057109:intron | 30.0% | |
| CCATTCTTAGCAATATATGA+TGG | + | chr3.2:76818640-76818659 | None:intergenic | 30.0% | |
| GACGTGTATAATAATACAAC+TGG | + | chr3.2:76818095-76818114 | None:intergenic | 30.0% | |
| GATAGAAATTTCAGAATGAG+TGG | + | chr3.2:76817739-76817758 | None:intergenic | 30.0% | |
| GATTCTACTATGTTTCTCAA+TGG | - | chr3.2:76817389-76817408 | MS.gene057109:intron | 30.0% | |
| GGTAAATTTGAAAACATGTC+TGG | - | chr3.2:76819125-76819144 | MS.gene057109:intron | 30.0% | |
| GTCTTCCATCAATAATTTCT+GGG | + | chr3.2:76819492-76819511 | None:intergenic | 30.0% | |
| TATAGGTACATGGTCAAAAT+AGG | - | chr3.2:76818370-76818389 | MS.gene057109:intron | 30.0% | |
| TCAATAATCTCTCTTCACTT+TGG | - | chr3.2:76819039-76819058 | MS.gene057109:intron | 30.0% | |
| TCATATTCAAGTATGAAGCA+CGG | + | chr3.2:76817267-76817286 | None:intergenic | 30.0% | |
| TTACCTAAAAGTAACATTCC+CGG | + | chr3.2:76819110-76819129 | None:intergenic | 30.0% | |
| TTATATTCCATAATCAGAGG+TGG | + | chr3.2:76819263-76819282 | None:intergenic | 30.0% | |
| ! | ACGAATGGTTTATATTTCTG+CGG | + | chr3.2:76817484-76817503 | None:intergenic | 30.0% |
| ! | AGACTAGGCTTTTAAATTTC+TGG | + | chr3.2:76818496-76818515 | None:intergenic | 30.0% |
| ! | GACTAGGCTTTTAAATTTCT+GGG | + | chr3.2:76818495-76818514 | None:intergenic | 30.0% |
| ! | GAGCTCTGATATTAGTTTAT+AGG | - | chr3.2:76818353-76818372 | MS.gene057109:intron | 30.0% |
| ! | TACAACTAGTACTGAAAGAT+TGG | - | chr3.2:76817579-76817598 | MS.gene057109:intron | 30.0% |
| ! | TGGTCCGCATTTTATATTTT+GGG | - | chr3.2:76819145-76819164 | MS.gene057109:intron | 30.0% |
| ! | TTATCCTTTTGTCGTTATGA+TGG | - | chr3.2:76818147-76818166 | MS.gene057109:intron | 30.0% |
| ! | TTGTTGTTAATTAAGCAAGG+TGG | + | chr3.2:76819422-76819441 | None:intergenic | 30.0% |
| !! | TATGTATATTCTGTTTCTGC+CGG | + | chr3.2:76817839-76817858 | None:intergenic | 30.0% |
| !!! | TTTTTTCCTTTCTCTAGGTA+TGG | - | chr3.2:76817434-76817453 | MS.gene057109:intron | 30.0% |
| AAAGTAGAGATCCTATGCAT+CGG | + | chr3.2:76818191-76818210 | None:intergenic | 35.0% | |
| AATATAAACCATTCGTGAGC+AGG | - | chr3.2:76817488-76817507 | MS.gene057109:intron | 35.0% | |
| AATTTCAGAATGAGTGGTTG+AGG | + | chr3.2:76817733-76817752 | None:intergenic | 35.0% | |
| AGATTGATTACAAGAGGAAC+AGG | + | chr3.2:76816786-76816805 | None:intergenic | 35.0% | |
| AGCAATTCCAATGAGAAACA+TGG | + | chr3.2:76817057-76817076 | None:intergenic | 35.0% | |
| AGTATATCCACCTCTGATTA+TGG | - | chr3.2:76819253-76819272 | MS.gene057109:intron | 35.0% | |
| ATCCGTTACCATATAACTAG+TGG | + | chr3.2:76818600-76818619 | None:intergenic | 35.0% | |
| ATGAACGGAACTGAAAACAA+CGG | - | chr3.2:76816660-76816679 | MS.gene057109:CDS | 35.0% | |
| ATGAGCATATTCTAAGCATC+AGG | - | chr3.2:76817617-76817636 | MS.gene057109:intron | 35.0% | |
| ATTAACTTTAAGCCAGCAGA+AGG | + | chr3.2:76818733-76818752 | None:intergenic | 35.0% | |
| ATTAGTGGCCTAAGAATTCA+AGG | + | chr3.2:76818884-76818903 | None:intergenic | 35.0% | |
| CAAATCACTTTCAGATGTCT+CGG | - | chr3.2:76819612-76819631 | MS.gene057109:CDS | 35.0% | |
| GAAATTATTGATGGAAGACC+AGG | - | chr3.2:76819493-76819512 | MS.gene057109:intron | 35.0% | |
| GAATATGCTCATTGTCATCA+AGG | + | chr3.2:76817609-76817628 | None:intergenic | 35.0% | |
| GCCTTAACGAAAACAATCTA+AGG | + | chr3.2:76819330-76819349 | None:intergenic | 35.0% | |
| GGTCTTCCATCAATAATTTC+TGG | + | chr3.2:76819493-76819512 | None:intergenic | 35.0% | |
| GTCATTTAGTATATTTGGGG+TGG | - | chr3.2:76818112-76818131 | MS.gene057109:intron | 35.0% | |
| GTTAAGGCTTGCACTTAATT+TGG | - | chr3.2:76819342-76819361 | MS.gene057109:intron | 35.0% | |
| TAAATGATGCGAGAAAGAAG+TGG | - | chr3.2:76819184-76819203 | MS.gene057109:intron | 35.0% | |
| TCAGATAGCATGAGAATGAA+AGG | + | chr3.2:76819230-76819249 | None:intergenic | 35.0% | |
| TCCGTTACCATATAACTAGT+GGG | + | chr3.2:76818599-76818618 | None:intergenic | 35.0% | |
| TCTATTAGTTCGTTGCTTGA+GGG | - | chr3.2:76817926-76817945 | MS.gene057109:intron | 35.0% | |
| TTCAACCAATTGTCAAACCA+AGG | - | chr3.2:76818845-76818864 | MS.gene057109:CDS | 35.0% | |
| TTGTTAATTAAGCAAGGTGG+AGG | + | chr3.2:76819419-76819438 | None:intergenic | 35.0% | |
| ! | AACTAGTACTGAAAGATTGG+AGG | - | chr3.2:76817582-76817601 | MS.gene057109:intron | 35.0% |
| ! | AATGTCCTTGGTTTGACAAT+TGG | + | chr3.2:76818853-76818872 | None:intergenic | 35.0% |
| ! | ATATGATGGGAAACAGTGTT+AGG | + | chr3.2:76818626-76818645 | None:intergenic | 35.0% |
| ! | ATCAATAATTTCTGGGTGGA+GGG | + | chr3.2:76819485-76819504 | None:intergenic | 35.0% |
| ! | ATGCATGAGTTGTTGATAAG+TGG | - | chr3.2:76819676-76819695 | MS.gene057109:CDS | 35.0% |
| ! | CTGGTCCGCATTTTATATTT+TGG | - | chr3.2:76819144-76819163 | MS.gene057109:intron | 35.0% |
| ! | GCCTTAGATTGTTTTCGTTA+AGG | - | chr3.2:76819326-76819345 | MS.gene057109:intron | 35.0% |
| ! | GCTGGTAATTGAATCTTTTG+TGG | - | chr3.2:76819519-76819538 | MS.gene057109:intron | 35.0% |
| ! | TCATGTGCATCGTTTTACAA+AGG | - | chr3.2:76818683-76818702 | MS.gene057109:intron | 35.0% |
| ! | TCTAAGGCAATATTGAGTCT+AGG | + | chr3.2:76819314-76819333 | None:intergenic | 35.0% |
| ! | TTCCATCAATAATTTCTGGG+TGG | + | chr3.2:76819489-76819508 | None:intergenic | 35.0% |
| ! | TTTAGTATATTTGGGGTGGA+AGG | - | chr3.2:76818116-76818135 | MS.gene057109:intron | 35.0% |
| !! | AAGAGAGATTATTGACTCAG+AGG | + | chr3.2:76819034-76819053 | None:intergenic | 35.0% |
| !! | AGAGAAGTTGATGTTAAGTC+AGG | - | chr3.2:76817547-76817566 | MS.gene057109:intron | 35.0% |
| !! | GAGAAGTTGATGTTAAGTCA+GGG | - | chr3.2:76817548-76817567 | MS.gene057109:intron | 35.0% |
| !! | TTATTGACTCAGAGGAATCT+TGG | + | chr3.2:76819026-76819045 | None:intergenic | 35.0% |
| !!! | AGTTTTACATGGACTAGACT+AGG | + | chr3.2:76818511-76818530 | None:intergenic | 35.0% |
| !!! | GCTGGTTAGTTAGTTTTACA+TGG | + | chr3.2:76818522-76818541 | None:intergenic | 35.0% |
| ACCAGAAGAACCAAACATCA+AGG | + | chr3.2:76818780-76818799 | None:intergenic | 40.0% | |
| ACTTATCAGTTGAGCAAGCA+TGG | + | chr3.2:76818286-76818305 | None:intergenic | 40.0% | |
| AGTGCTTAAGCCACAAGAAT+TGG | - | chr3.2:76818984-76819003 | MS.gene057109:intron | 40.0% | |
| ATGTAATTCGCATGTGTCAG+TGG | + | chr3.2:76817176-76817195 | None:intergenic | 40.0% | |
| CAAAGACCATACCTAGAGAA+AGG | + | chr3.2:76817443-76817462 | None:intergenic | 40.0% | |
| CAGTATCAACATCCCAGATA+TGG | + | chr3.2:76817897-76817916 | None:intergenic | 40.0% | |
| CCCCACTAGTTATATGGTAA+CGG | - | chr3.2:76818595-76818614 | MS.gene057109:intron | 40.0% | |
| CCGTTACCATATAACTAGTG+GGG | + | chr3.2:76818598-76818617 | None:intergenic | 40.0% | |
| CTAAGCATCAGGATTATTGG+TGG | - | chr3.2:76817628-76817647 | MS.gene057109:intron | 40.0% | |
| CTCCACCCAGAAATTATTGA+TGG | - | chr3.2:76819484-76819503 | MS.gene057109:intron | 40.0% | |
| CTCTTAAACTCCCAATCTCA+AGG | + | chr3.2:76817531-76817550 | None:intergenic | 40.0% | |
| CTTGCCATCATAACGACAAA+AGG | + | chr3.2:76818154-76818173 | None:intergenic | 40.0% | |
| CTTTCAGTACTAGTTGTAGC+AGG | + | chr3.2:76817577-76817596 | None:intergenic | 40.0% | |
| CTTTCTCTAGGTATGGTCTT+TGG | - | chr3.2:76817441-76817460 | MS.gene057109:intron | 40.0% | |
| GATTCTGCCATGTTTCTCAT+TGG | - | chr3.2:76817047-76817066 | MS.gene057109:intron | 40.0% | |
| GGATGTTGATACTGTTAGGA+AGG | - | chr3.2:76817903-76817922 | MS.gene057109:intron | 40.0% | |
| GGTACATGGTCAAAATAGGA+AGG | - | chr3.2:76818374-76818393 | MS.gene057109:intron | 40.0% | |
| GTCTATTAGTTCGTTGCTTG+AGG | - | chr3.2:76817925-76817944 | MS.gene057109:intron | 40.0% | |
| GTGAGATTGCATGCAATATG+TGG | + | chr3.2:76817761-76817780 | None:intergenic | 40.0% | |
| GTGTAAGATACACATTGCAC+CGG | - | chr3.2:76817817-76817836 | MS.gene057109:intron | 40.0% | |
| TAAGGCTTCAACAAAGTAGC+AGG | + | chr3.2:76819578-76819597 | None:intergenic | 40.0% | |
| TAATGGCCCCACTAGTTATA+TGG | - | chr3.2:76818589-76818608 | MS.gene057109:intron | 40.0% | |
| TATGATGTAGAGTTTGGCTG+TGG | - | chr3.2:76817321-76817340 | MS.gene057109:intron | 40.0% | |
| TCGACAAGTTCCTTGATGTT+TGG | - | chr3.2:76818767-76818786 | MS.gene057109:CDS | 40.0% | |
| TGGCTAGAGCTTATACTACT+CGG | + | chr3.2:76818075-76818094 | None:intergenic | 40.0% | |
| TTAATTAAGCAAGGTGGAGG+AGG | + | chr3.2:76819416-76819435 | None:intergenic | 40.0% | |
| TTCTTGTGGCTTAAGCACTT+AGG | + | chr3.2:76818983-76819002 | None:intergenic | 40.0% | |
| TTTGTGGTAGATGTACCAGA+GGG | - | chr3.2:76819535-76819554 | MS.gene057109:intron | 40.0% | |
| ! | ACGCATTTCATCAGAAGTGT+CGG | + | chr3.2:76817124-76817143 | None:intergenic | 40.0% |
| ! | CATCAATAATTTCTGGGTGG+AGG | + | chr3.2:76819486-76819505 | None:intergenic | 40.0% |
| ! | CTTTGGAGATGTTCCTTTCA+AGG | - | chr3.2:76819056-76819075 | MS.gene057109:intron | 40.0% |
| ! | GCTTAAGCACTTAGGCTTTT+GGG | + | chr3.2:76818975-76818994 | None:intergenic | 40.0% |
| ! | TCTGGGATGTTGATACTGTT+AGG | - | chr3.2:76817899-76817918 | MS.gene057109:intron | 40.0% |
| ! | TTTTGTGGTAGATGTACCAG+AGG | - | chr3.2:76819534-76819553 | MS.gene057109:intron | 40.0% |
| !! | GCACTGACACTTTTAATGGA+AGG | - | chr3.2:76816906-76816925 | MS.gene057109:intron | 40.0% |
| !! | GGATTATTGGTGGTGATCAT+AGG | - | chr3.2:76817638-76817657 | MS.gene057109:intron | 40.0% |
| !! | TCCATTAAAAGTGTCAGTGC+TGG | + | chr3.2:76816906-76816925 | None:intergenic | 40.0% |
| !! | TCCTTGATGTTTGGTTCTTC+TGG | - | chr3.2:76818776-76818795 | MS.gene057109:CDS | 40.0% |
| !!! | TCCAGCACTGACACTTTTAA+TGG | - | chr3.2:76816902-76816921 | MS.gene057109:intron | 40.0% |
| !!! | TGTCCGGGAATGTTACTTTT+AGG | - | chr3.2:76819104-76819123 | MS.gene057109:intron | 40.0% |
| AAAGTAGCAGGTCTCATCCT+TGG | + | chr3.2:76819566-76819585 | None:intergenic | 45.0% | |
| AACTCATGCATCCGATCAAG+TGG | + | chr3.2:76819667-76819686 | None:intergenic | 45.0% | |
| ACCTCACTGAACCACTTGAT+CGG | - | chr3.2:76819653-76819672 | MS.gene057109:CDS | 45.0% | |
| AGACATCACAATCAACAGCC+TGG | - | chr3.2:76816717-76816736 | MS.gene057109:CDS | 45.0% | |
| AGTGTTTAACACCACGGAGA+TGG | - | chr3.2:76816683-76816702 | MS.gene057109:CDS | 45.0% | |
| ATGCATCGGAAACAAGTACC+AGG | + | chr3.2:76818177-76818196 | None:intergenic | 45.0% | |
| CACTTTCAGATGTCTCGGAA+GGG | - | chr3.2:76819617-76819636 | MS.gene057109:CDS | 45.0% | |
| CTTCTGATGAAATGCGTGTC+TGG | - | chr3.2:76817127-76817146 | MS.gene057109:intron | 45.0% | |
| GAGATGCAGTGAAAGTTTGC+AGG | + | chr3.2:76818246-76818265 | None:intergenic | 45.0% | |
| GAGCTCAGATCTTTGAGCTA+TGG | + | chr3.2:76818339-76818358 | None:intergenic | 45.0% | |
| GATTCAATTACCAGCGTTCC+TGG | + | chr3.2:76819514-76819533 | None:intergenic | 45.0% | |
| GGTACTTGTTTCCGATGCAT+AGG | - | chr3.2:76818177-76818196 | MS.gene057109:intron | 45.0% | |
| TCACTTTCAGATGTCTCGGA+AGG | - | chr3.2:76819616-76819635 | MS.gene057109:CDS | 45.0% | |
| TCTAGGTATGGTCTTTGGTG+AGG | - | chr3.2:76817446-76817465 | MS.gene057109:intron | 45.0% | |
| TGAGGGGAAACCTTGAGATT+GGG | - | chr3.2:76817518-76817537 | MS.gene057109:intron | 45.0% | |
| TTATTCCCGAGAACACTGTC+CGG | - | chr3.2:76819088-76819107 | MS.gene057109:intron | 45.0% | |
| TTGTGGTAGATGTACCAGAG+GGG | - | chr3.2:76819536-76819555 | MS.gene057109:intron | 45.0% | |
| ! | CAACGGAGTGTTTAACACCA+CGG | - | chr3.2:76816677-76816696 | MS.gene057109:CDS | 45.0% |
| ! | GGCTTAAGCACTTAGGCTTT+TGG | + | chr3.2:76818976-76818995 | None:intergenic | 45.0% |
| ! | TGGTGGTGATCATAGGCTTA+GGG | - | chr3.2:76817645-76817664 | MS.gene057109:intron | 45.0% |
| !! | GAAGAACACTGATTCTGTCC+AGG | + | chr3.2:76816738-76816757 | None:intergenic | 45.0% |
| !! | TTGGTGGTGATCATAGGCTT+AGG | - | chr3.2:76817644-76817663 | MS.gene057109:intron | 45.0% |
| ACATTCCCGGACAGTGTTCT+CGG | + | chr3.2:76819097-76819116 | None:intergenic | 50.0% | |
| ACCAGCTCACTGCTACACTT+AGG | - | chr3.2:76818536-76818555 | MS.gene057109:intron | 50.0% | |
| ACCTAAGTGTAGCAGTGAGC+TGG | + | chr3.2:76818540-76818559 | None:intergenic | 50.0% | |
| AGGTATGGTCTTTGGTGAGG+AGG | - | chr3.2:76817449-76817468 | MS.gene057109:intron | 50.0% | |
| ATGAAGCACGGCACATACAC+TGG | + | chr3.2:76817255-76817274 | None:intergenic | 50.0% | |
| ATTAAGCAAGGTGGAGGAGG+AGG | + | chr3.2:76819413-76819432 | None:intergenic | 50.0% | |
| GTGAGGGGAAACCTTGAGAT+TGG | - | chr3.2:76817517-76817536 | MS.gene057109:intron | 50.0% | |
| TATTCCCGAGAACACTGTCC+GGG | - | chr3.2:76819089-76819108 | MS.gene057109:intron | 50.0% | |
| TCATCCTTGGTATTCCCCTC+TGG | + | chr3.2:76819553-76819572 | None:intergenic | 50.0% | |
| TCCGATCAAGTGGTTCAGTG+AGG | + | chr3.2:76819657-76819676 | None:intergenic | 50.0% | |
| TCTGATGTACTCCATCTCCG+TGG | + | chr3.2:76816697-76816716 | None:intergenic | 50.0% | |
| TGGAAGACACCAACACGTGT+CGG | + | chr3.2:76817156-76817175 | None:intergenic | 50.0% | |
| TGTACCAGAGGGGAATACCA+AGG | - | chr3.2:76819546-76819565 | MS.gene057109:intron | 50.0% | |
| TGTCGTTATGATGGCAAGCC+TGG | - | chr3.2:76818156-76818175 | MS.gene057109:intron | 50.0% | |
| !! | TAAAGTGTCGGTCCTTCTGC+TGG | - | chr3.2:76818718-76818737 | MS.gene057109:CDS | 50.0% |
| ACCACACACCTGCTCACGAA+TGG | + | chr3.2:76817499-76817518 | None:intergenic | 55.0% | |
| ACCATTCGTGAGCAGGTGTG+TGG | - | chr3.2:76817495-76817514 | MS.gene057109:intron | 55.0% | |
| CATTCCCGGACAGTGTTCTC+GGG | + | chr3.2:76819096-76819115 | None:intergenic | 55.0% | |
| GTCTGGTATCCGACACGTGT+TGG | - | chr3.2:76817144-76817163 | MS.gene057109:intron | 55.0% | |
| TGATGGAAGACCAGGAACGC+TGG | - | chr3.2:76819501-76819520 | MS.gene057109:intron | 55.0% | |
| CGTGAGCAGGTGTGTGGTGA+GGG | - | chr3.2:76817501-76817520 | MS.gene057109:intron | 60.0% | |
| GTGAGCAGGTGTGTGGTGAG+GGG | - | chr3.2:76817502-76817521 | MS.gene057109:intron | 60.0% | |
| TCGTGAGCAGGTGTGTGGTG+AGG | - | chr3.2:76817500-76817519 | MS.gene057109:intron | 60.0% | |
| ! | CTCGGAAGGGCATGCTGTGC+AGG | - | chr3.2:76819630-76819649 | MS.gene057109:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 76816651 | 76819702 | 76816651 | ID=MS.gene057109 |
| chr3.2 | mRNA | 76816651 | 76819702 | 76816651 | ID=MS.gene057109.t1;Parent=MS.gene057109 |
| chr3.2 | exon | 76819559 | 76819702 | 76819559 | ID=MS.gene057109.t1.exon1;Parent=MS.gene057109.t1 |
| chr3.2 | CDS | 76819559 | 76819702 | 76819559 | ID=cds.MS.gene057109.t1;Parent=MS.gene057109.t1 |
| chr3.2 | exon | 76818687 | 76818902 | 76818687 | ID=MS.gene057109.t1.exon2;Parent=MS.gene057109.t1 |
| chr3.2 | CDS | 76818687 | 76818902 | 76818687 | ID=cds.MS.gene057109.t1;Parent=MS.gene057109.t1 |
| chr3.2 | exon | 76816651 | 76816890 | 76816651 | ID=MS.gene057109.t1.exon3;Parent=MS.gene057109.t1 |
| chr3.2 | CDS | 76816651 | 76816890 | 76816651 | ID=cds.MS.gene057109.t1;Parent=MS.gene057109.t1 |
| Gene Sequence |
| Protein sequence |
