Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057108.t1 | XP_003602205.1 | 98.5 | 199 | 3 | 0 | 1 | 199 | 1 | 199 | 1.50E-108 | 402.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057108.t1 | Q9FGM1 | 79.3 | 184 | 34 | 1 | 8 | 187 | 2 | 185 | 9.4e-80 | 297.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057108.t1 | G7J6S4 | 98.5 | 199 | 3 | 0 | 1 | 199 | 1 | 199 | 1.1e-108 | 402.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050384 | MS.gene057108 | 0.820968 | 5.18E-53 | -1.69E-46 |
| MS.gene050386 | MS.gene057108 | 0.829593 | 4.72E-55 | -1.69E-46 |
| MS.gene057108 | MS.gene057109 | 0.993764 | 4.69E-202 | -1.69E-46 |
| MS.gene057108 | MS.gene057110 | 0.993563 | 1.31E-200 | -1.69E-46 |
| MS.gene057108 | MS.gene061958 | 0.803612 | 3.21E-49 | -1.69E-46 |
| MS.gene057108 | MS.gene066067 | 0.815731 | 7.95E-52 | -1.69E-46 |
| MS.gene057108 | MS.gene066342 | 0.808191 | 3.50E-50 | -1.69E-46 |
| MS.gene057108 | MS.gene066362 | 0.800769 | 1.23E-48 | -1.69E-46 |
| MS.gene057108 | MS.gene06744 | 0.990072 | 6.28E-181 | -1.69E-46 |
| MS.gene057108 | MS.gene06745 | 0.992096 | 2.80E-191 | -1.69E-46 |
| MS.gene057108 | MS.gene067635 | 0.824519 | 7.73E-54 | -1.69E-46 |
| MS.gene057108 | MS.gene068166 | 0.815637 | 8.35E-52 | -1.69E-46 |
| MS.gene057108 | MS.gene23256 | 0.820566 | 6.41E-53 | -1.69E-46 |
| MS.gene057108 | MS.gene23484 | 0.830516 | 2.81E-55 | -1.69E-46 |
| MS.gene057108 | MS.gene24924 | 0.80022 | 1.60E-48 | -1.69E-46 |
| MS.gene057108 | MS.gene34115 | 0.810039 | 1.41E-50 | -1.69E-46 |
| MS.gene057108 | MS.gene35436 | 0.829544 | 4.85E-55 | -1.69E-46 |
| MS.gene057108 | MS.gene36311 | 0.803556 | 3.29E-49 | -1.69E-46 |
| MS.gene057108 | MS.gene46376 | 0.802324 | 5.92E-49 | -1.69E-46 |
| MS.gene057108 | MS.gene47818 | 0.81187 | 5.64E-51 | -1.69E-46 |
| MS.gene057108 | MS.gene50027 | 0.817582 | 3.06E-52 | -1.69E-46 |
| MS.gene057108 | MS.gene53935 | 0.826883 | 2.12E-54 | -1.69E-46 |
| MS.gene057108 | MS.gene60300 | 0.808383 | 3.18E-50 | -1.69E-46 |
| MS.gene057108 | MS.gene63673 | 0.830584 | 2.70E-55 | -1.69E-46 |
| MS.gene057108 | MS.gene67082 | 0.808054 | 3.74E-50 | -1.69E-46 |
| MS.gene057108 | MS.gene81239 | 0.84037 | 9.06E-58 | -1.69E-46 |
| MS.gene057108 | MS.gene82881 | 0.801825 | 7.50E-49 | -1.69E-46 |
| MS.gene057108 | MS.gene85109 | 0.831946 | 1.25E-55 | -1.69E-46 |
| MS.gene057108 | MS.gene85111 | 0.801065 | 1.07E-48 | -1.69E-46 |
| MS.gene057108 | MS.gene88148 | 0.805395 | 1.36E-49 | -1.69E-46 |
| MS.gene057108 | MS.gene99465 | 0.813928 | 2.00E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene057108 | MS.gene59569 | PPI |
| MS.gene79764 | MS.gene057108 | PPI |
| MS.gene057108 | MS.gene95282 | PPI |
| MS.gene057108 | MS.gene86009 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057108.t1 | MTR_3g090980 | 98.492 | 199 | 3 | 0 | 1 | 199 | 1 | 199 | 1.96e-147 | 407 |
| MS.gene057108.t1 | MTR_1g028380 | 86.842 | 190 | 24 | 1 | 4 | 192 | 1 | 190 | 1.21e-122 | 344 |
| MS.gene057108.t1 | MTR_8g027805 | 75.269 | 186 | 45 | 1 | 5 | 190 | 3 | 187 | 3.15e-103 | 295 |
| MS.gene057108.t1 | MTR_3g071740 | 53.012 | 166 | 73 | 4 | 15 | 178 | 60 | 222 | 6.25e-59 | 184 |
| MS.gene057108.t1 | MTR_5g083270 | 52.147 | 163 | 72 | 3 | 19 | 178 | 44 | 203 | 9.05e-57 | 178 |
| MS.gene057108.t1 | MTR_7g070050 | 55.491 | 173 | 71 | 3 | 15 | 181 | 7 | 179 | 1.61e-55 | 174 |
| MS.gene057108.t1 | MTR_4g014460 | 45.455 | 176 | 91 | 2 | 8 | 178 | 32 | 207 | 6.86e-53 | 169 |
| MS.gene057108.t1 | MTR_1g016480 | 46.471 | 170 | 82 | 3 | 16 | 177 | 28 | 196 | 1.42e-52 | 167 |
| MS.gene057108.t1 | MTR_5g030500 | 48.795 | 166 | 78 | 3 | 20 | 179 | 43 | 207 | 1.08e-49 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057108.t1 | AT5G53160 | 79.348 | 184 | 34 | 1 | 8 | 187 | 2 | 185 | 2.20e-105 | 301 |
| MS.gene057108.t1 | AT1G01360 | 74.317 | 183 | 45 | 1 | 5 | 187 | 7 | 187 | 2.18e-98 | 283 |
| MS.gene057108.t1 | AT4G27920 | 71.591 | 176 | 45 | 2 | 4 | 178 | 1 | 172 | 2.49e-92 | 268 |
| MS.gene057108.t1 | AT4G01026 | 69.945 | 183 | 53 | 1 | 7 | 189 | 11 | 191 | 4.65e-90 | 263 |
| MS.gene057108.t1 | AT5G53160 | 75.214 | 117 | 25 | 1 | 8 | 120 | 2 | 118 | 5.66e-60 | 185 |
| MS.gene057108.t1 | AT2G40330 | 48.171 | 164 | 81 | 2 | 19 | 178 | 46 | 209 | 3.39e-53 | 169 |
| MS.gene057108.t1 | AT5G05440 | 50.633 | 158 | 73 | 3 | 19 | 174 | 43 | 197 | 3.89e-53 | 169 |
| MS.gene057108.t1 | AT2G38310 | 53.374 | 163 | 71 | 2 | 23 | 183 | 41 | 200 | 4.16e-53 | 169 |
| MS.gene057108.t1 | AT2G26040 | 45.238 | 168 | 87 | 3 | 21 | 184 | 22 | 188 | 4.45e-51 | 163 |
| MS.gene057108.t1 | AT4G17870 | 47.853 | 163 | 83 | 1 | 21 | 181 | 17 | 179 | 4.02e-48 | 155 |
| MS.gene057108.t1 | AT1G73000 | 41.176 | 170 | 89 | 2 | 21 | 179 | 37 | 206 | 1.25e-43 | 145 |
| MS.gene057108.t1 | AT5G45870 | 51.007 | 149 | 70 | 2 | 31 | 178 | 7 | 153 | 9.28e-40 | 133 |
| MS.gene057108.t1 | AT5G46790 | 46.341 | 164 | 83 | 2 | 21 | 179 | 44 | 207 | 1.12e-39 | 135 |
| MS.gene057108.t1 | AT5G46790 | 46.341 | 164 | 83 | 2 | 21 | 179 | 44 | 207 | 1.12e-39 | 135 |
| MS.gene057108.t1 | AT5G45860 | 49.383 | 162 | 73 | 3 | 18 | 178 | 1 | 154 | 1.08e-38 | 130 |
| MS.gene057108.t1 | AT4G18620 | 44.025 | 159 | 82 | 1 | 27 | 178 | 2 | 160 | 1.88e-35 | 122 |
Find 57 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCTTCCATCAATAATTTC+TGG | 0.156182 | 3.2:+76830857 | None:intergenic |
| CTTTCTCTAGGTATGGTCTT+TGG | 0.253746 | 3.2:-76832902 | MS.gene057108:intron |
| TTTGAGATTGCACTTAATTA+AGG | 0.261510 | 3.2:+76830754 | None:intergenic |
| ATTCTAAGCATCAGGATTAT+TGG | 0.270575 | 3.2:-76832718 | MS.gene057108:CDS |
| GTCTTCCATCAATAATTTCT+GGG | 0.334881 | 3.2:+76830858 | None:intergenic |
| GATTCAATTACCAGCGTTCC+TGG | 0.351242 | 3.2:+76830836 | None:intergenic |
| GGATTATTGGTGGTGATCAT+AGG | 0.376992 | 3.2:-76832705 | MS.gene057108:CDS |
| CTCGGAAGGGCATGCTGTGC+AGG | 0.389173 | 3.2:-76830717 | MS.gene057108:CDS |
| AGAGAAGTTGATGTTAAGTC+AGG | 0.400572 | 3.2:-76832796 | MS.gene057108:CDS |
| CTCCACCCAGAAATTATTGA+TGG | 0.415182 | 3.2:-76830863 | MS.gene057108:CDS |
| AGATTGATTACAAGAGGAAC+AGG | 0.418165 | 3.2:+76833560 | None:intergenic |
| TTGGTGGTGATCATAGGCTT+AGG | 0.430017 | 3.2:-76832699 | MS.gene057108:CDS |
| GTGAGGGGAAACCTTGAGAT+TGG | 0.441356 | 3.2:-76832826 | MS.gene057108:CDS |
| TCATCCTTGGTATTCCCCTC+TGG | 0.450075 | 3.2:+76830797 | None:intergenic |
| ATGAGCATATTCTAAGCATC+AGG | 0.464677 | 3.2:-76832726 | MS.gene057108:CDS |
| TACAACTAGTACTGAAAGAT+TGG | 0.468120 | 3.2:-76832764 | MS.gene057108:CDS |
| AATATAAACCATTCGTGAGC+AGG | 0.468294 | 3.2:-76832855 | MS.gene057108:CDS |
| CATCAATAATTTCTGGGTGG+AGG | 0.490844 | 3.2:+76830864 | None:intergenic |
| TGGTGGTGATCATAGGCTTA+GGG | 0.497834 | 3.2:-76832698 | MS.gene057108:intron |
| ATCAATAATTTCTGGGTGGA+GGG | 0.509205 | 3.2:+76830865 | None:intergenic |
| CTTTCAGTACTAGTTGTAGC+AGG | 0.511083 | 3.2:+76832769 | None:intergenic |
| TAAGGCTTCAACAAAGTAGC+AGG | 0.515776 | 3.2:+76830772 | None:intergenic |
| CAAATCACTTTCAGATGTCT+CGG | 0.517164 | 3.2:-76830735 | MS.gene057108:CDS |
| AGGTATGGTCTTTGGTGAGG+AGG | 0.517669 | 3.2:-76832894 | MS.gene057108:CDS |
| ACCTCACTGAACCACTTGAT+CGG | 0.518102 | 3.2:-76830694 | MS.gene057108:CDS |
| CTCTTAAACTCCCAATCTCA+AGG | 0.524215 | 3.2:+76832815 | None:intergenic |
| AAAGTAGCAGGTCTCATCCT+TGG | 0.524327 | 3.2:+76830784 | None:intergenic |
| TGAGGGGAAACCTTGAGATT+GGG | 0.526415 | 3.2:-76832825 | MS.gene057108:CDS |
| CGTGAGCAGGTGTGTGGTGA+GGG | 0.527012 | 3.2:-76832842 | MS.gene057108:CDS |
| GAATATGCTCATTGTCATCA+AGG | 0.528687 | 3.2:+76832737 | None:intergenic |
| GAAGAACACTGATTCTGTCC+AGG | 0.537074 | 3.2:+76833608 | None:intergenic |
| TCTAGGTATGGTCTTTGGTG+AGG | 0.537536 | 3.2:-76832897 | MS.gene057108:intron |
| AGTGTTTAACACCACGGAGA+TGG | 0.545954 | 3.2:-76833660 | MS.gene057108:CDS |
| ACGAATGGTTTATATTTCTG+CGG | 0.550997 | 3.2:+76832862 | None:intergenic |
| GAAATTATTGATGGAAGACC+AGG | 0.551294 | 3.2:-76830854 | MS.gene057108:CDS |
| AACTAGTACTGAAAGATTGG+AGG | 0.551568 | 3.2:-76832761 | MS.gene057108:CDS |
| AACTCATGCATCCGATCAAG+TGG | 0.554489 | 3.2:+76830683 | None:intergenic |
| TCGGCGATGGCGAAAATGAA+CGG | 0.559282 | 3.2:-76833698 | None:intergenic |
| AGACATCACAATCAACAGCC+TGG | 0.570498 | 3.2:-76833626 | MS.gene057108:CDS |
| CTAAGCATCAGGATTATTGG+TGG | 0.576552 | 3.2:-76832715 | MS.gene057108:CDS |
| TCACTTTCAGATGTCTCGGA+AGG | 0.579393 | 3.2:-76830731 | MS.gene057108:CDS |
| ACCACACACCTGCTCACGAA+TGG | 0.579553 | 3.2:+76832847 | None:intergenic |
| GAGAAGTTGATGTTAAGTCA+GGG | 0.583074 | 3.2:-76832795 | MS.gene057108:CDS |
| ATGCATGAGTTGTTGATAAG+TGG | 0.595471 | 3.2:-76830671 | MS.gene057108:CDS |
| TCGTGAGCAGGTGTGTGGTG+AGG | 0.600369 | 3.2:-76832843 | MS.gene057108:CDS |
| CACTTTCAGATGTCTCGGAA+GGG | 0.603305 | 3.2:-76830730 | MS.gene057108:CDS |
| TGATGGAAGACCAGGAACGC+TGG | 0.621740 | 3.2:-76830846 | MS.gene057108:CDS |
| TTTGTGGTAGATGTACCAGA+GGG | 0.648012 | 3.2:-76830812 | MS.gene057108:CDS |
| TTCCATCAATAATTTCTGGG+TGG | 0.663028 | 3.2:+76830861 | None:intergenic |
| ACCATTCGTGAGCAGGTGTG+TGG | 0.686863 | 3.2:-76832848 | MS.gene057108:CDS |
| CAACGGAGTGTTTAACACCA+CGG | 0.688274 | 3.2:-76833666 | MS.gene057108:CDS |
| TCCGATCAAGTGGTTCAGTG+AGG | 0.707128 | 3.2:+76830693 | None:intergenic |
| GTGAGCAGGTGTGTGGTGAG+GGG | 0.713491 | 3.2:-76832841 | MS.gene057108:CDS |
| ATGAACGGAACTGAAAACAA+CGG | 0.716623 | 3.2:-76833683 | MS.gene057108:CDS |
| TGTACCAGAGGGGAATACCA+AGG | 0.724913 | 3.2:-76830801 | MS.gene057108:CDS |
| TCTGATGTACTCCATCTCCG+TGG | 0.739793 | 3.2:+76833649 | None:intergenic |
| TTGTGGTAGATGTACCAGAG+GGG | 0.770632 | 3.2:-76830811 | MS.gene057108:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTAGCTTTT+CGG | - | chr3.2:76830872-76830891 | MS.gene057108:CDS | 10.0% |
| !! | AATATAAATCAAGTAAAACA+TGG | - | chr3.2:76833289-76833308 | MS.gene057108:intron | 15.0% |
| !! | TAATAGAATCATTTAAACTA+TGG | + | chr3.2:76831118-76831137 | None:intergenic | 15.0% |
| !!! | TTTTTCAAAAATTTTACTTG+TGG | - | chr3.2:76831226-76831245 | MS.gene057108:intron | 15.0% |
| !! | AAAAATATCTGTTAAAGTGT+CGG | - | chr3.2:76832721-76832740 | MS.gene057108:CDS | 20.0% |
| !! | ATAAAATTATACACCTTGAA+AGG | + | chr3.2:76833087-76833106 | None:intergenic | 20.0% |
| !! | TATACATAATTAATCTCTGT+CGG | - | chr3.2:76831867-76831886 | MS.gene057108:intron | 20.0% |
| !! | TGTTTCATTCATATAATTGA+CGG | - | chr3.2:76831974-76831993 | MS.gene057108:intron | 20.0% |
| !!! | GTTATATGCTGTTTTTTTAA+TGG | - | chr3.2:76832587-76832606 | MS.gene057108:intron | 20.0% |
| !!! | GTTTCAAGTTTAAATTATGA+TGG | + | chr3.2:76832240-76832259 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTTAATTAAGCA+AGG | + | chr3.2:76833437-76833456 | None:intergenic | 20.0% |
| ! | AAAAAACAGCATATAACTAG+AGG | + | chr3.2:76832584-76832603 | None:intergenic | 25.0% |
| ! | AAAAACAGCATATAACTAGA+GGG | + | chr3.2:76832583-76832602 | None:intergenic | 25.0% |
| ! | AAAAATCTCTAATCCATATC+TGG | - | chr3.2:76831897-76831916 | MS.gene057108:intron | 25.0% |
| ! | AAAATCTCTAATCCATATCT+GGG | - | chr3.2:76831898-76831917 | MS.gene057108:intron | 25.0% |
| ! | AAACTATGACAGTTAATTAG+TGG | + | chr3.2:76832914-76832933 | None:intergenic | 25.0% |
| ! | AAATCAAGTAAAACATGGAA+GGG | - | chr3.2:76833294-76833313 | MS.gene057108:intron | 25.0% |
| ! | ACACGTCATTTAGTATATTT+GGG | - | chr3.2:76832124-76832143 | MS.gene057108:intron | 25.0% |
| ! | AGAATCTAGCAAATCAAAAA+CGG | + | chr3.2:76830850-76830869 | None:intergenic | 25.0% |
| ! | ATAGTAAGATTGATTACAAG+AGG | + | chr3.2:76830808-76830827 | None:intergenic | 25.0% |
| ! | CATTCTTAGCAATATATGAT+GGG | + | chr3.2:76832654-76832673 | None:intergenic | 25.0% |
| ! | GATTTATATTCCATAATCAG+AGG | + | chr3.2:76833279-76833298 | None:intergenic | 25.0% |
| ! | TAAATCAAGTAAAACATGGA+AGG | - | chr3.2:76833293-76833312 | MS.gene057108:intron | 25.0% |
| ! | TACACGTCATTTAGTATATT+TGG | - | chr3.2:76832123-76832142 | MS.gene057108:intron | 25.0% |
| ! | TGATATTATGATGTAGAGTT+TGG | - | chr3.2:76831332-76831351 | MS.gene057108:intron | 25.0% |
| ! | TTAAGATTCCTTGAATTCTT+AGG | - | chr3.2:76832888-76832907 | MS.gene057108:CDS | 25.0% |
| ! | TTGTATTAAACCAATTCTTG+TGG | + | chr3.2:76833012-76833031 | None:intergenic | 25.0% |
| ! | TTTCAACAAAAGAGTAATGA+AGG | + | chr3.2:76831713-76831732 | None:intergenic | 25.0% |
| !! | AGCTAAAATTTTCATTGTCT+AGG | - | chr3.2:76832835-76832854 | MS.gene057108:CDS | 25.0% |
| !! | GATATTAGTTTATAGGTACA+TGG | - | chr3.2:76832376-76832395 | MS.gene057108:intron | 25.0% |
| !! | TTCTAGAGACATCATAATAT+AGG | + | chr3.2:76832958-76832977 | None:intergenic | 25.0% |
| !! | TTTGAGATTGCACTTAATTA+AGG | + | chr3.2:76833608-76833627 | None:intergenic | 25.0% |
| !!! | GACAATGAAAATTTTAGCTA+CGG | + | chr3.2:76832834-76832853 | None:intergenic | 25.0% |
| !!! | GCTTTTAAATTTCTGGAATT+AGG | + | chr3.2:76832504-76832523 | None:intergenic | 25.0% |
| !!! | GTTTTTTTTTTCCTTTCTCT+AGG | - | chr3.2:76831445-76831464 | MS.gene057108:intron | 25.0% |
| AAGGAATCTTAAAATGTCCT+TGG | + | chr3.2:76832880-76832899 | None:intergenic | 30.0% | |
| ATTCTAAGCATCAGGATTAT+TGG | - | chr3.2:76831641-76831660 | MS.gene057108:intron | 30.0% | |
| CACGTCATTTAGTATATTTG+GGG | - | chr3.2:76832125-76832144 | MS.gene057108:intron | 30.0% | |
| CCATCATATATTGCTAAGAA+TGG | - | chr3.2:76832652-76832671 | MS.gene057108:intron | 30.0% | |
| CCATTCTTAGCAATATATGA+TGG | + | chr3.2:76832655-76832674 | None:intergenic | 30.0% | |
| GACGTGTATAATAATACAAC+TGG | + | chr3.2:76832111-76832130 | None:intergenic | 30.0% | |
| GATAGAAATTTCAGAATGAG+TGG | + | chr3.2:76831755-76831774 | None:intergenic | 30.0% | |
| GATTCTACTATGTTTCTCAA+TGG | - | chr3.2:76831405-76831424 | MS.gene057108:intron | 30.0% | |
| GTCTTCCATCAATAATTTCT+GGG | + | chr3.2:76833504-76833523 | None:intergenic | 30.0% | |
| GTCTTCCCAAAATATAAATG+CGG | + | chr3.2:76833166-76833185 | None:intergenic | 30.0% | |
| TATAGGTACATGGTCAAAAT+AGG | - | chr3.2:76832386-76832405 | MS.gene057108:intron | 30.0% | |
| TCAATAATCTCTCTTCACTT+TGG | - | chr3.2:76833054-76833073 | MS.gene057108:intron | 30.0% | |
| TCATATTCAAGTATGAAGCA+CGG | + | chr3.2:76831284-76831303 | None:intergenic | 30.0% | |
| TTACCTAAAAGTAACATTCC+CGG | + | chr3.2:76833125-76833144 | None:intergenic | 30.0% | |
| TTATATTCCATAATCAGAGG+TGG | + | chr3.2:76833276-76833295 | None:intergenic | 30.0% | |
| ! | ACGAATGGTTTATATTTCTG+CGG | + | chr3.2:76831500-76831519 | None:intergenic | 30.0% |
| ! | AGACTAGGCTTTTAAATTTC+TGG | + | chr3.2:76832511-76832530 | None:intergenic | 30.0% |
| ! | AGGTAAATTTGAAACATGTC+TGG | - | chr3.2:76833139-76833158 | MS.gene057108:intron | 30.0% |
| ! | GAGCTCTGATATTAGTTTAT+AGG | - | chr3.2:76832369-76832388 | MS.gene057108:intron | 30.0% |
| ! | TACAACTAGTACTGAAAGAT+TGG | - | chr3.2:76831595-76831614 | MS.gene057108:intron | 30.0% |
| ! | TTATCCTTTTGTCGTTATGA+TGG | - | chr3.2:76832163-76832182 | MS.gene057108:intron | 30.0% |
| ! | TTGTTGTTAATTAAGCAAGG+TGG | + | chr3.2:76833434-76833453 | None:intergenic | 30.0% |
| !! | TATGTATATTCTGTTTCTGC+CGG | + | chr3.2:76831855-76831874 | None:intergenic | 30.0% |
| !!! | TTTTTTCCTTTCTCTAGGTA+TGG | - | chr3.2:76831450-76831469 | MS.gene057108:intron | 30.0% |
| AAAGTAGAGATCCTATGCAT+CGG | + | chr3.2:76832207-76832226 | None:intergenic | 35.0% | |
| AATATAAACCATTCGTGAGC+AGG | - | chr3.2:76831504-76831523 | MS.gene057108:intron | 35.0% | |
| AATTTCAGAATGAGTGGTTG+AGG | + | chr3.2:76831749-76831768 | None:intergenic | 35.0% | |
| AGATTGATTACAAGAGGAAC+AGG | + | chr3.2:76830802-76830821 | None:intergenic | 35.0% | |
| AGCAATTCCAATGAGAAACA+TGG | + | chr3.2:76831074-76831093 | None:intergenic | 35.0% | |
| AGTATATCCACCTCTGATTA+TGG | - | chr3.2:76833266-76833285 | MS.gene057108:intron | 35.0% | |
| ATCCGTTACCATATAACTAG+TGG | + | chr3.2:76832615-76832634 | None:intergenic | 35.0% | |
| ATGAACGGAACTGAAAACAA+CGG | - | chr3.2:76830676-76830695 | MS.gene057108:CDS | 35.0% | |
| ATGAGCATATTCTAAGCATC+AGG | - | chr3.2:76831633-76831652 | MS.gene057108:intron | 35.0% | |
| ATTAACTTTAAGCCAGCAGA+AGG | + | chr3.2:76832748-76832767 | None:intergenic | 35.0% | |
| ATTAGTGGCCTAAGAATTCA+AGG | + | chr3.2:76832899-76832918 | None:intergenic | 35.0% | |
| CAAATCACTTTCAGATGTCT+CGG | - | chr3.2:76833624-76833643 | MS.gene057108:CDS | 35.0% | |
| GAAATTATTGATGGAAGACC+AGG | - | chr3.2:76833505-76833524 | MS.gene057108:intron | 35.0% | |
| GAATATGCTCATTGTCATCA+AGG | + | chr3.2:76831625-76831644 | None:intergenic | 35.0% | |
| GCCTTAACGAAAACAATCTA+AGG | + | chr3.2:76833343-76833362 | None:intergenic | 35.0% | |
| GGTCTTCCATCAATAATTTC+TGG | + | chr3.2:76833505-76833524 | None:intergenic | 35.0% | |
| GTCATTTAGTATATTTGGGG+TGG | - | chr3.2:76832128-76832147 | MS.gene057108:intron | 35.0% | |
| GTTAAGGCTTGCACTTAATT+TGG | - | chr3.2:76833355-76833374 | MS.gene057108:intron | 35.0% | |
| TAAATGATGCGAGAAAGAAG+TGG | - | chr3.2:76833197-76833216 | MS.gene057108:intron | 35.0% | |
| TCAGATAGCATGAGAATGAA+AGG | + | chr3.2:76833243-76833262 | None:intergenic | 35.0% | |
| TCCGTTACCATATAACTAGT+GGG | + | chr3.2:76832614-76832633 | None:intergenic | 35.0% | |
| TCTATTAGTTCGTTGCTTGA+GGG | - | chr3.2:76831942-76831961 | MS.gene057108:intron | 35.0% | |
| TTCAACCAATTGTCAAACCA+AGG | - | chr3.2:76832860-76832879 | MS.gene057108:CDS | 35.0% | |
| TTGTTAATTAAGCAAGGTGG+AGG | + | chr3.2:76833431-76833450 | None:intergenic | 35.0% | |
| ! | AACTAGTACTGAAAGATTGG+AGG | - | chr3.2:76831598-76831617 | MS.gene057108:intron | 35.0% |
| ! | AATGTCCTTGGTTTGACAAT+TGG | + | chr3.2:76832868-76832887 | None:intergenic | 35.0% |
| ! | ATATGATGGGAAACAGTGTT+AGG | + | chr3.2:76832641-76832660 | None:intergenic | 35.0% |
| ! | ATCAATAATTTCTGGGTGGA+GGG | + | chr3.2:76833497-76833516 | None:intergenic | 35.0% |
| ! | ATGCATGAGTTGTTGATAAG+TGG | - | chr3.2:76833688-76833707 | MS.gene057108:CDS | 35.0% |
| ! | CTGGTCCGCATTTATATTTT+GGG | - | chr3.2:76833158-76833177 | MS.gene057108:intron | 35.0% |
| ! | GCCTTAGATTGTTTTCGTTA+AGG | - | chr3.2:76833339-76833358 | MS.gene057108:intron | 35.0% |
| ! | GCTGGTAATTGAATCTTTTG+TGG | - | chr3.2:76833531-76833550 | MS.gene057108:intron | 35.0% |
| ! | TCATGTGCATCGTTTTACAA+AGG | - | chr3.2:76832698-76832717 | MS.gene057108:intron | 35.0% |
| ! | TCTAAGGCAATATTGAGTCT+AGG | + | chr3.2:76833327-76833346 | None:intergenic | 35.0% |
| ! | TCTGGTCCGCATTTATATTT+TGG | - | chr3.2:76833157-76833176 | MS.gene057108:intron | 35.0% |
| ! | TTCCATCAATAATTTCTGGG+TGG | + | chr3.2:76833501-76833520 | None:intergenic | 35.0% |
| ! | TTTAGTATATTTGGGGTGGA+AGG | - | chr3.2:76832132-76832151 | MS.gene057108:intron | 35.0% |
| !! | AAGAGAGATTATTGACTCAG+AGG | + | chr3.2:76833049-76833068 | None:intergenic | 35.0% |
| !! | AGAGAAGTTGATGTTAAGTC+AGG | - | chr3.2:76831563-76831582 | MS.gene057108:intron | 35.0% |
| !! | GAGAAGTTGATGTTAAGTCA+GGG | - | chr3.2:76831564-76831583 | MS.gene057108:intron | 35.0% |
| !! | TTATTGACTCAGAGGAATCT+TGG | + | chr3.2:76833041-76833060 | None:intergenic | 35.0% |
| !!! | AGTTTTACATGGACTAGACT+AGG | + | chr3.2:76832526-76832545 | None:intergenic | 35.0% |
| !!! | GCTGGTTAGTTAGTTTTACA+TGG | + | chr3.2:76832537-76832556 | None:intergenic | 35.0% |
| ACCAGAAGAACCAAACATCA+AGG | + | chr3.2:76832795-76832814 | None:intergenic | 40.0% | |
| ACTTATCAGTTGAGCAAGCA+TGG | + | chr3.2:76832302-76832321 | None:intergenic | 40.0% | |
| AGTGCTTAAGCCACAAGAAT+TGG | - | chr3.2:76832999-76833018 | MS.gene057108:intron | 40.0% | |
| ATGTAATTCGCATGTGTCAG+TGG | + | chr3.2:76831193-76831212 | None:intergenic | 40.0% | |
| CAAAGACCATACCTAGAGAA+AGG | + | chr3.2:76831459-76831478 | None:intergenic | 40.0% | |
| CAGTATCAACATCCCAGATA+TGG | + | chr3.2:76831913-76831932 | None:intergenic | 40.0% | |
| CCCCACTAGTTATATGGTAA+CGG | - | chr3.2:76832610-76832629 | MS.gene057108:intron | 40.0% | |
| CCGTTACCATATAACTAGTG+GGG | + | chr3.2:76832613-76832632 | None:intergenic | 40.0% | |
| CTAAGCATCAGGATTATTGG+TGG | - | chr3.2:76831644-76831663 | MS.gene057108:intron | 40.0% | |
| CTCCACCCAGAAATTATTGA+TGG | - | chr3.2:76833496-76833515 | MS.gene057108:intron | 40.0% | |
| CTCTTAAACTCCCAATCTCA+AGG | + | chr3.2:76831547-76831566 | None:intergenic | 40.0% | |
| CTTGCCATCATAACGACAAA+AGG | + | chr3.2:76832170-76832189 | None:intergenic | 40.0% | |
| CTTTCAGTACTAGTTGTAGC+AGG | + | chr3.2:76831593-76831612 | None:intergenic | 40.0% | |
| CTTTCTCTAGGTATGGTCTT+TGG | - | chr3.2:76831457-76831476 | MS.gene057108:intron | 40.0% | |
| GATTCTGCCATGTTTCTCAT+TGG | - | chr3.2:76831064-76831083 | MS.gene057108:intron | 40.0% | |
| GGATGTTGATACTGTTAGGA+AGG | - | chr3.2:76831919-76831938 | MS.gene057108:intron | 40.0% | |
| GGTACATGGTCAAAATAGGA+AGG | - | chr3.2:76832390-76832409 | MS.gene057108:intron | 40.0% | |
| GTCTATTAGTTCGTTGCTTG+AGG | - | chr3.2:76831941-76831960 | MS.gene057108:intron | 40.0% | |
| GTGAGATTGCATGCAATATG+TGG | + | chr3.2:76831777-76831796 | None:intergenic | 40.0% | |
| GTGTAAGATACACATTGCAC+CGG | - | chr3.2:76831833-76831852 | MS.gene057108:intron | 40.0% | |
| TAAGGCTTCAACAAAGTAGC+AGG | + | chr3.2:76833590-76833609 | None:intergenic | 40.0% | |
| TAATGGCCCCACTAGTTATA+TGG | - | chr3.2:76832604-76832623 | MS.gene057108:intron | 40.0% | |
| TATGATGTAGAGTTTGGCTG+TGG | - | chr3.2:76831338-76831357 | MS.gene057108:intron | 40.0% | |
| TCGACAAGTTCCTTGATGTT+TGG | - | chr3.2:76832782-76832801 | MS.gene057108:CDS | 40.0% | |
| TGGCTAGAGCTTATACTACT+CGG | + | chr3.2:76832091-76832110 | None:intergenic | 40.0% | |
| TTAATTAAGCAAGGTGGAGG+AGG | + | chr3.2:76833428-76833447 | None:intergenic | 40.0% | |
| TTCTTGTGGCTTAAGCACTT+AGG | + | chr3.2:76832998-76833017 | None:intergenic | 40.0% | |
| TTTGTGGTAGATGTACCAGA+GGG | - | chr3.2:76833547-76833566 | MS.gene057108:intron | 40.0% | |
| ! | ACGCATTTCATCAGAAGTGT+CGG | + | chr3.2:76831141-76831160 | None:intergenic | 40.0% |
| ! | CATCAATAATTTCTGGGTGG+AGG | + | chr3.2:76833498-76833517 | None:intergenic | 40.0% |
| ! | CTTTGGAGATGTTCCTTTCA+AGG | - | chr3.2:76833071-76833090 | MS.gene057108:intron | 40.0% |
| ! | GCTTAAGCACTTAGGCTTTT+GGG | + | chr3.2:76832990-76833009 | None:intergenic | 40.0% |
| ! | TCTGGGATGTTGATACTGTT+AGG | - | chr3.2:76831915-76831934 | MS.gene057108:intron | 40.0% |
| ! | TTTTGTGGTAGATGTACCAG+AGG | - | chr3.2:76833546-76833565 | MS.gene057108:intron | 40.0% |
| !! | GCACTGACACTTTTAATGGA+AGG | - | chr3.2:76830923-76830942 | MS.gene057108:intron | 40.0% |
| !! | GGATTATTGGTGGTGATCAT+AGG | - | chr3.2:76831654-76831673 | MS.gene057108:intron | 40.0% |
| !! | TCCATTAAAAGTGTCAGTGC+TGG | + | chr3.2:76830923-76830942 | None:intergenic | 40.0% |
| !! | TCCTTGATGTTTGGTTCTTC+TGG | - | chr3.2:76832791-76832810 | MS.gene057108:CDS | 40.0% |
| !!! | TCCAGCACTGACACTTTTAA+TGG | - | chr3.2:76830919-76830938 | MS.gene057108:intron | 40.0% |
| !!! | TGTCCGGGAATGTTACTTTT+AGG | - | chr3.2:76833119-76833138 | MS.gene057108:intron | 40.0% |
| AAAGTAGCAGGTCTCATCCT+TGG | + | chr3.2:76833578-76833597 | None:intergenic | 45.0% | |
| AACTCATGCATCCGATCAAG+TGG | + | chr3.2:76833679-76833698 | None:intergenic | 45.0% | |
| ACCTCACTGAACCACTTGAT+CGG | - | chr3.2:76833665-76833684 | MS.gene057108:CDS | 45.0% | |
| AGACATCACAATCAACAGCC+TGG | - | chr3.2:76830733-76830752 | MS.gene057108:CDS | 45.0% | |
| AGTGTTTAACACCACGGAGA+TGG | - | chr3.2:76830699-76830718 | MS.gene057108:CDS | 45.0% | |
| ATGCATCGGAAACAAGTACC+AGG | + | chr3.2:76832193-76832212 | None:intergenic | 45.0% | |
| CACTTTCAGATGTCTCGGAA+GGG | - | chr3.2:76833629-76833648 | MS.gene057108:CDS | 45.0% | |
| CTTCTGATGAAATGCGTGTC+TGG | - | chr3.2:76831144-76831163 | MS.gene057108:intron | 45.0% | |
| GAGATGCAGTGAAAGTTTGC+AGG | + | chr3.2:76832262-76832281 | None:intergenic | 45.0% | |
| GAGCTCAGATCTTTGAGCTA+TGG | + | chr3.2:76832355-76832374 | None:intergenic | 45.0% | |
| GATTCAATTACCAGCGTTCC+TGG | + | chr3.2:76833526-76833545 | None:intergenic | 45.0% | |
| GGTACTTGTTTCCGATGCAT+AGG | - | chr3.2:76832193-76832212 | MS.gene057108:intron | 45.0% | |
| TCACTTTCAGATGTCTCGGA+AGG | - | chr3.2:76833628-76833647 | MS.gene057108:CDS | 45.0% | |
| TCTAGGTATGGTCTTTGGTG+AGG | - | chr3.2:76831462-76831481 | MS.gene057108:intron | 45.0% | |
| TGAGGGGAAACCTTGAGATT+GGG | - | chr3.2:76831534-76831553 | MS.gene057108:intron | 45.0% | |
| TTATTCCCGAGAACACTGTC+CGG | - | chr3.2:76833103-76833122 | MS.gene057108:intron | 45.0% | |
| TTGTGGTAGATGTACCAGAG+GGG | - | chr3.2:76833548-76833567 | MS.gene057108:intron | 45.0% | |
| ! | CAACGGAGTGTTTAACACCA+CGG | - | chr3.2:76830693-76830712 | MS.gene057108:CDS | 45.0% |
| ! | GGCTTAAGCACTTAGGCTTT+TGG | + | chr3.2:76832991-76833010 | None:intergenic | 45.0% |
| ! | TGGTGGTGATCATAGGCTTA+GGG | - | chr3.2:76831661-76831680 | MS.gene057108:intron | 45.0% |
| !! | GAAGAACACTGATTCTGTCC+AGG | + | chr3.2:76830754-76830773 | None:intergenic | 45.0% |
| !! | TTGGTGGTGATCATAGGCTT+AGG | - | chr3.2:76831660-76831679 | MS.gene057108:intron | 45.0% |
| ACATTCCCGGACAGTGTTCT+CGG | + | chr3.2:76833112-76833131 | None:intergenic | 50.0% | |
| ACCAGCTCACTGCTACACTT+AGG | - | chr3.2:76832551-76832570 | MS.gene057108:intron | 50.0% | |
| ACCTAAGTGTAGCAGTGAGC+TGG | + | chr3.2:76832555-76832574 | None:intergenic | 50.0% | |
| AGGTATGGTCTTTGGTGAGG+AGG | - | chr3.2:76831465-76831484 | MS.gene057108:intron | 50.0% | |
| ATGAAGCACGGCACATACAC+TGG | + | chr3.2:76831272-76831291 | None:intergenic | 50.0% | |
| ATTAAGCAAGGTGGAGGAGG+AGG | + | chr3.2:76833425-76833444 | None:intergenic | 50.0% | |
| GTGAGGGGAAACCTTGAGAT+TGG | - | chr3.2:76831533-76831552 | MS.gene057108:intron | 50.0% | |
| TATTCCCGAGAACACTGTCC+GGG | - | chr3.2:76833104-76833123 | MS.gene057108:intron | 50.0% | |
| TCATCCTTGGTATTCCCCTC+TGG | + | chr3.2:76833565-76833584 | None:intergenic | 50.0% | |
| TCCGATCAAGTGGTTCAGTG+AGG | + | chr3.2:76833669-76833688 | None:intergenic | 50.0% | |
| TCTGATGTACTCCATCTCCG+TGG | + | chr3.2:76830713-76830732 | None:intergenic | 50.0% | |
| TGGAAGACACCAACACGTGT+CGG | + | chr3.2:76831173-76831192 | None:intergenic | 50.0% | |
| TGTACCAGAGGGGAATACCA+AGG | - | chr3.2:76833558-76833577 | MS.gene057108:intron | 50.0% | |
| TGTCGTTATGATGGCAAGCC+TGG | - | chr3.2:76832172-76832191 | MS.gene057108:intron | 50.0% | |
| !! | TAAAGTGTCGGTCCTTCTGC+TGG | - | chr3.2:76832733-76832752 | MS.gene057108:CDS | 50.0% |
| ACCACACACCTGCTCACGAA+TGG | + | chr3.2:76831515-76831534 | None:intergenic | 55.0% | |
| ACCATTCGTGAGCAGGTGTG+TGG | - | chr3.2:76831511-76831530 | MS.gene057108:intron | 55.0% | |
| CATTCCCGGACAGTGTTCTC+GGG | + | chr3.2:76833111-76833130 | None:intergenic | 55.0% | |
| GTCTGGTATCCGACACGTGT+TGG | - | chr3.2:76831161-76831180 | MS.gene057108:intron | 55.0% | |
| TGATGGAAGACCAGGAACGC+TGG | - | chr3.2:76833513-76833532 | MS.gene057108:intron | 55.0% | |
| CGTGAGCAGGTGTGTGGTGA+GGG | - | chr3.2:76831517-76831536 | MS.gene057108:intron | 60.0% | |
| GTGAGCAGGTGTGTGGTGAG+GGG | - | chr3.2:76831518-76831537 | MS.gene057108:intron | 60.0% | |
| TCGTGAGCAGGTGTGTGGTG+AGG | - | chr3.2:76831516-76831535 | MS.gene057108:intron | 60.0% | |
| ! | CTCGGAAGGGCATGCTGTGC+AGG | - | chr3.2:76833642-76833661 | MS.gene057108:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 76830667 | 76833714 | 76830667 | ID=MS.gene057108 |
| chr3.2 | mRNA | 76830667 | 76833714 | 76830667 | ID=MS.gene057108.t1;Parent=MS.gene057108 |
| chr3.2 | exon | 76833571 | 76833714 | 76833571 | ID=MS.gene057108.t1.exon1;Parent=MS.gene057108.t1 |
| chr3.2 | CDS | 76833571 | 76833714 | 76833571 | ID=cds.MS.gene057108.t1;Parent=MS.gene057108.t1 |
| chr3.2 | exon | 76832699 | 76832914 | 76832699 | ID=MS.gene057108.t1.exon2;Parent=MS.gene057108.t1 |
| chr3.2 | CDS | 76832699 | 76832914 | 76832699 | ID=cds.MS.gene057108.t1;Parent=MS.gene057108.t1 |
| chr3.2 | exon | 76830667 | 76830906 | 76830667 | ID=MS.gene057108.t1.exon3;Parent=MS.gene057108.t1 |
| chr3.2 | CDS | 76830667 | 76830906 | 76830667 | ID=cds.MS.gene057108.t1;Parent=MS.gene057108.t1 |
| Gene Sequence |
| Protein sequence |
