Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06745.t1 | XP_003602205.1 | 98.5 | 199 | 3 | 0 | 1 | 199 | 1 | 199 | 1.50E-108 | 402.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06745.t1 | Q9FGM1 | 79.3 | 184 | 34 | 1 | 8 | 187 | 2 | 185 | 9.4e-80 | 297.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06745.t1 | G7J6S4 | 98.5 | 199 | 3 | 0 | 1 | 199 | 1 | 199 | 1.1e-108 | 402.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050384 | MS.gene06745 | 0.822812 | 1.94E-53 | -1.69E-46 |
| MS.gene050386 | MS.gene06745 | 0.830714 | 2.51E-55 | -1.69E-46 |
| MS.gene057108 | MS.gene06745 | 0.992096 | 2.80E-191 | -1.69E-46 |
| MS.gene057109 | MS.gene06745 | 0.994724 | 1.18E-209 | -1.69E-46 |
| MS.gene057110 | MS.gene06745 | 0.990432 | 1.32E-182 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95282 | MS.gene06745 | PPI |
| MS.gene79764 | MS.gene06745 | PPI |
| MS.gene86009 | MS.gene06745 | PPI |
| MS.gene59569 | MS.gene06745 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06745.t1 | MTR_3g090980 | 98.492 | 199 | 3 | 0 | 1 | 199 | 1 | 199 | 1.96e-147 | 407 |
| MS.gene06745.t1 | MTR_1g028380 | 86.842 | 190 | 24 | 1 | 4 | 192 | 1 | 190 | 1.21e-122 | 344 |
| MS.gene06745.t1 | MTR_8g027805 | 75.269 | 186 | 45 | 1 | 5 | 190 | 3 | 187 | 3.15e-103 | 295 |
| MS.gene06745.t1 | MTR_3g071740 | 53.012 | 166 | 73 | 4 | 15 | 178 | 60 | 222 | 6.25e-59 | 184 |
| MS.gene06745.t1 | MTR_5g083270 | 52.147 | 163 | 72 | 3 | 19 | 178 | 44 | 203 | 9.05e-57 | 178 |
| MS.gene06745.t1 | MTR_7g070050 | 55.491 | 173 | 71 | 3 | 15 | 181 | 7 | 179 | 1.61e-55 | 174 |
| MS.gene06745.t1 | MTR_4g014460 | 45.455 | 176 | 91 | 2 | 8 | 178 | 32 | 207 | 6.86e-53 | 169 |
| MS.gene06745.t1 | MTR_1g016480 | 46.471 | 170 | 82 | 3 | 16 | 177 | 28 | 196 | 1.42e-52 | 167 |
| MS.gene06745.t1 | MTR_5g030500 | 48.795 | 166 | 78 | 3 | 20 | 179 | 43 | 207 | 1.08e-49 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06745.t1 | AT5G53160 | 79.348 | 184 | 34 | 1 | 8 | 187 | 2 | 185 | 2.20e-105 | 301 |
| MS.gene06745.t1 | AT1G01360 | 74.317 | 183 | 45 | 1 | 5 | 187 | 7 | 187 | 2.18e-98 | 283 |
| MS.gene06745.t1 | AT4G27920 | 71.591 | 176 | 45 | 2 | 4 | 178 | 1 | 172 | 2.49e-92 | 268 |
| MS.gene06745.t1 | AT4G01026 | 69.945 | 183 | 53 | 1 | 7 | 189 | 11 | 191 | 4.65e-90 | 263 |
| MS.gene06745.t1 | AT5G53160 | 75.214 | 117 | 25 | 1 | 8 | 120 | 2 | 118 | 5.66e-60 | 185 |
| MS.gene06745.t1 | AT2G40330 | 48.171 | 164 | 81 | 2 | 19 | 178 | 46 | 209 | 3.39e-53 | 169 |
| MS.gene06745.t1 | AT5G05440 | 50.633 | 158 | 73 | 3 | 19 | 174 | 43 | 197 | 3.89e-53 | 169 |
| MS.gene06745.t1 | AT2G38310 | 53.374 | 163 | 71 | 2 | 23 | 183 | 41 | 200 | 4.16e-53 | 169 |
| MS.gene06745.t1 | AT2G26040 | 45.238 | 168 | 87 | 3 | 21 | 184 | 22 | 188 | 4.45e-51 | 163 |
| MS.gene06745.t1 | AT4G17870 | 47.853 | 163 | 83 | 1 | 21 | 181 | 17 | 179 | 4.02e-48 | 155 |
| MS.gene06745.t1 | AT1G73000 | 41.176 | 170 | 89 | 2 | 21 | 179 | 37 | 206 | 1.25e-43 | 145 |
| MS.gene06745.t1 | AT5G45870 | 51.007 | 149 | 70 | 2 | 31 | 178 | 7 | 153 | 9.28e-40 | 133 |
| MS.gene06745.t1 | AT5G46790 | 46.341 | 164 | 83 | 2 | 21 | 179 | 44 | 207 | 1.12e-39 | 135 |
| MS.gene06745.t1 | AT5G46790 | 46.341 | 164 | 83 | 2 | 21 | 179 | 44 | 207 | 1.12e-39 | 135 |
| MS.gene06745.t1 | AT5G45860 | 49.383 | 162 | 73 | 3 | 18 | 178 | 1 | 154 | 1.08e-38 | 130 |
| MS.gene06745.t1 | AT4G18620 | 44.025 | 159 | 82 | 1 | 27 | 178 | 2 | 160 | 1.88e-35 | 122 |
Find 57 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCTTCCATCAATAATTTC+TGG | 0.156182 | 3.2:+76806487 | None:intergenic |
| CTTTCTCTAGGTATGGTCTT+TGG | 0.253746 | 3.2:-76808536 | MS.gene06745:intron |
| TTTGAGATTGCACTTAATTA+AGG | 0.261510 | 3.2:+76806384 | None:intergenic |
| ATTCTAAGCATCAGGATTAT+TGG | 0.270575 | 3.2:-76808352 | MS.gene06745:CDS |
| GTCTTCCATCAATAATTTCT+GGG | 0.334881 | 3.2:+76806488 | None:intergenic |
| GATTCAATTACCAGCGTTCC+TGG | 0.351242 | 3.2:+76806466 | None:intergenic |
| GGATTATTGGTGGTGATCAT+AGG | 0.376992 | 3.2:-76808339 | MS.gene06745:CDS |
| CTCGGAAGGGCATGCTGTGC+AGG | 0.389173 | 3.2:-76806347 | MS.gene06745:CDS |
| AGAGAAGTTGATGTTAAGTC+AGG | 0.400572 | 3.2:-76808430 | MS.gene06745:CDS |
| CTCCACCCAGAAATTATTGA+TGG | 0.415182 | 3.2:-76806493 | MS.gene06745:CDS |
| AGATTGATTACAAGAGGAAC+AGG | 0.418165 | 3.2:+76809194 | None:intergenic |
| TTGGTGGTGATCATAGGCTT+AGG | 0.430017 | 3.2:-76808333 | MS.gene06745:CDS |
| GTGAGGGGAAACCTTGAGAT+TGG | 0.441356 | 3.2:-76808460 | MS.gene06745:CDS |
| TCATCCTTGGTATTCCCCTC+TGG | 0.450075 | 3.2:+76806427 | None:intergenic |
| ATGAGCATATTCTAAGCATC+AGG | 0.464677 | 3.2:-76808360 | MS.gene06745:CDS |
| TACAACTAGTACTGAAAGAT+TGG | 0.468120 | 3.2:-76808398 | MS.gene06745:CDS |
| AATATAAACCATTCGTGAGC+AGG | 0.468294 | 3.2:-76808489 | MS.gene06745:CDS |
| CATCAATAATTTCTGGGTGG+AGG | 0.490844 | 3.2:+76806494 | None:intergenic |
| TGGTGGTGATCATAGGCTTA+GGG | 0.497834 | 3.2:-76808332 | MS.gene06745:intron |
| ATCAATAATTTCTGGGTGGA+GGG | 0.509205 | 3.2:+76806495 | None:intergenic |
| CTTTCAGTACTAGTTGTAGC+AGG | 0.511083 | 3.2:+76808403 | None:intergenic |
| TAAGGCTTCAACAAAGTAGC+AGG | 0.515776 | 3.2:+76806402 | None:intergenic |
| CAAATCACTTTCAGATGTCT+CGG | 0.517164 | 3.2:-76806365 | MS.gene06745:CDS |
| AGGTATGGTCTTTGGTGAGG+AGG | 0.517669 | 3.2:-76808528 | MS.gene06745:CDS |
| ACCTCACTGAACCACTTGAT+CGG | 0.518102 | 3.2:-76806324 | MS.gene06745:CDS |
| CTCTTAAACTCCCAATCTCA+AGG | 0.524215 | 3.2:+76808449 | None:intergenic |
| AAAGTAGCAGGTCTCATCCT+TGG | 0.524327 | 3.2:+76806414 | None:intergenic |
| TGAGGGGAAACCTTGAGATT+GGG | 0.526415 | 3.2:-76808459 | MS.gene06745:CDS |
| CGTGAGCAGGTGTGTGGTGA+GGG | 0.527012 | 3.2:-76808476 | MS.gene06745:CDS |
| GAATATGCTCATTGTCATCA+AGG | 0.528687 | 3.2:+76808371 | None:intergenic |
| GAAGAACACTGATTCTGTCC+AGG | 0.537074 | 3.2:+76809242 | None:intergenic |
| TCTAGGTATGGTCTTTGGTG+AGG | 0.537536 | 3.2:-76808531 | MS.gene06745:intron |
| AGTGTTTAACACCACGGAGA+TGG | 0.545954 | 3.2:-76809294 | MS.gene06745:CDS |
| ACGAATGGTTTATATTTCTG+CGG | 0.550997 | 3.2:+76808496 | None:intergenic |
| GAAATTATTGATGGAAGACC+AGG | 0.551294 | 3.2:-76806484 | MS.gene06745:CDS |
| AACTAGTACTGAAAGATTGG+AGG | 0.551568 | 3.2:-76808395 | MS.gene06745:CDS |
| AACTCATGCATCCGATCAAG+TGG | 0.554489 | 3.2:+76806313 | None:intergenic |
| TCGGCGATGGCGAAAATGAA+CGG | 0.559282 | 3.2:-76809332 | None:intergenic |
| AGACATCACAATCAACAGCC+TGG | 0.570498 | 3.2:-76809260 | MS.gene06745:CDS |
| CTAAGCATCAGGATTATTGG+TGG | 0.576552 | 3.2:-76808349 | MS.gene06745:CDS |
| TCACTTTCAGATGTCTCGGA+AGG | 0.579393 | 3.2:-76806361 | MS.gene06745:CDS |
| ACCACACACCTGCTCACGAA+TGG | 0.579553 | 3.2:+76808481 | None:intergenic |
| GAGAAGTTGATGTTAAGTCA+GGG | 0.583074 | 3.2:-76808429 | MS.gene06745:CDS |
| ATGCATGAGTTGTTGATAAG+TGG | 0.595471 | 3.2:-76806301 | MS.gene06745:CDS |
| TCGTGAGCAGGTGTGTGGTG+AGG | 0.600369 | 3.2:-76808477 | MS.gene06745:CDS |
| CACTTTCAGATGTCTCGGAA+GGG | 0.603305 | 3.2:-76806360 | MS.gene06745:CDS |
| TGATGGAAGACCAGGAACGC+TGG | 0.621740 | 3.2:-76806476 | MS.gene06745:CDS |
| TTTGTGGTAGATGTACCAGA+GGG | 0.648012 | 3.2:-76806442 | MS.gene06745:CDS |
| TTCCATCAATAATTTCTGGG+TGG | 0.663028 | 3.2:+76806491 | None:intergenic |
| ACCATTCGTGAGCAGGTGTG+TGG | 0.686863 | 3.2:-76808482 | MS.gene06745:CDS |
| CAACGGAGTGTTTAACACCA+CGG | 0.688274 | 3.2:-76809300 | MS.gene06745:CDS |
| TCCGATCAAGTGGTTCAGTG+AGG | 0.707128 | 3.2:+76806323 | None:intergenic |
| GTGAGCAGGTGTGTGGTGAG+GGG | 0.713491 | 3.2:-76808475 | MS.gene06745:CDS |
| ATGAACGGAACTGAAAACAA+CGG | 0.716623 | 3.2:-76809317 | MS.gene06745:CDS |
| TGTACCAGAGGGGAATACCA+AGG | 0.724913 | 3.2:-76806431 | MS.gene06745:CDS |
| TCTGATGTACTCCATCTCCG+TGG | 0.739793 | 3.2:+76809283 | None:intergenic |
| TTGTGGTAGATGTACCAGAG+GGG | 0.770632 | 3.2:-76806441 | MS.gene06745:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTAGCTTTT+CGG | - | chr3.2:76806501-76806520 | MS.gene06745:CDS | 10.0% |
| !! | AATATAAATCAAGTAAAACA+TGG | - | chr3.2:76808922-76808941 | MS.gene06745:intron | 15.0% |
| !! | TAATAGAATCATTTAAACTA+TGG | + | chr3.2:76806747-76806766 | None:intergenic | 15.0% |
| !!! | TTTTTCAAAAATTTTACTTG+TGG | - | chr3.2:76806855-76806874 | MS.gene06745:intron | 15.0% |
| !! | AAAAATATCTGTTAAAGTGT+CGG | - | chr3.2:76808352-76808371 | MS.gene06745:CDS | 20.0% |
| !! | ATAAAATTATACACCTTGAA+AGG | + | chr3.2:76808718-76808737 | None:intergenic | 20.0% |
| !! | TATACATAATTAATCTCTGT+CGG | - | chr3.2:76807497-76807516 | MS.gene06745:intron | 20.0% |
| !! | TGTTTCATTCATATAATTGA+CGG | - | chr3.2:76807604-76807623 | MS.gene06745:intron | 20.0% |
| !!! | GTTATATGCTGTTTTTTTAA+TGG | - | chr3.2:76808218-76808237 | MS.gene06745:intron | 20.0% |
| !!! | GTTTCAAGTTTAAATTATGA+TGG | + | chr3.2:76807870-76807889 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTTAATTAAGCA+AGG | + | chr3.2:76809071-76809090 | None:intergenic | 20.0% |
| ! | AAAAAACAGCATATAACTAG+AGG | + | chr3.2:76808215-76808234 | None:intergenic | 25.0% |
| ! | AAAAACAGCATATAACTAGA+GGG | + | chr3.2:76808214-76808233 | None:intergenic | 25.0% |
| ! | AAAAATCTCTAATCCATATC+TGG | - | chr3.2:76807527-76807546 | MS.gene06745:intron | 25.0% |
| ! | AAAATCTCTAATCCATATCT+GGG | - | chr3.2:76807528-76807547 | MS.gene06745:intron | 25.0% |
| ! | AAACTATGACAGTTAATTAG+TGG | + | chr3.2:76808545-76808564 | None:intergenic | 25.0% |
| ! | AAATCAAGTAAAACATGGAA+GGG | - | chr3.2:76808927-76808946 | MS.gene06745:intron | 25.0% |
| ! | ACACGTCATTTAGTATATTT+GGG | - | chr3.2:76807754-76807773 | MS.gene06745:intron | 25.0% |
| ! | AGAATCTAGCAAATCAAAAA+CGG | + | chr3.2:76806480-76806499 | None:intergenic | 25.0% |
| ! | ATAGTAAGATTGATTACAAG+AGG | + | chr3.2:76806438-76806457 | None:intergenic | 25.0% |
| ! | CATTCTTAGCAATATATGAT+GGG | + | chr3.2:76808285-76808304 | None:intergenic | 25.0% |
| ! | GATTTATATTCCATAATCAG+AGG | + | chr3.2:76808912-76808931 | None:intergenic | 25.0% |
| ! | TAAATCAAGTAAAACATGGA+AGG | - | chr3.2:76808926-76808945 | MS.gene06745:intron | 25.0% |
| ! | TACACGTCATTTAGTATATT+TGG | - | chr3.2:76807753-76807772 | MS.gene06745:intron | 25.0% |
| ! | TCTTCCCAAAATATAAAATG+CGG | + | chr3.2:76808798-76808817 | None:intergenic | 25.0% |
| ! | TGATATTATGATGTAGAGTT+TGG | - | chr3.2:76806961-76806980 | MS.gene06745:intron | 25.0% |
| ! | TTAAGATTCCTTGAATTCTT+AGG | - | chr3.2:76808519-76808538 | MS.gene06745:CDS | 25.0% |
| ! | TTGTATTAAACCAATTCTTG+TGG | + | chr3.2:76808643-76808662 | None:intergenic | 25.0% |
| ! | TTTCAACAAAAGAGTAATGA+AGG | + | chr3.2:76807343-76807362 | None:intergenic | 25.0% |
| !! | AGCTAAAATTTTCATTGTCT+AGG | - | chr3.2:76808466-76808485 | MS.gene06745:CDS | 25.0% |
| !! | GATATTAGTTTATAGGTACA+TGG | - | chr3.2:76808006-76808025 | MS.gene06745:intron | 25.0% |
| !! | TTCTAGAGACATCATAATAT+AGG | + | chr3.2:76808589-76808608 | None:intergenic | 25.0% |
| !! | TTTGAGATTGCACTTAATTA+AGG | + | chr3.2:76809242-76809261 | None:intergenic | 25.0% |
| !!! | CTTTTAAATTTCTGGGAATT+AGG | + | chr3.2:76808134-76808153 | None:intergenic | 25.0% |
| !!! | GACAATGAAAATTTTAGCTA+CGG | + | chr3.2:76808465-76808484 | None:intergenic | 25.0% |
| !!! | GTTTTTTTTTTCCTTTCTCT+AGG | - | chr3.2:76807075-76807094 | MS.gene06745:intron | 25.0% |
| AAGGAATCTTAAAATGTCCT+TGG | + | chr3.2:76808511-76808530 | None:intergenic | 30.0% | |
| ATTCTAAGCATCAGGATTAT+TGG | - | chr3.2:76807271-76807290 | MS.gene06745:intron | 30.0% | |
| CACGTCATTTAGTATATTTG+GGG | - | chr3.2:76807755-76807774 | MS.gene06745:intron | 30.0% | |
| CCATCATATATTGCTAAGAA+TGG | - | chr3.2:76808283-76808302 | MS.gene06745:intron | 30.0% | |
| CCATTCTTAGCAATATATGA+TGG | + | chr3.2:76808286-76808305 | None:intergenic | 30.0% | |
| GACGTGTATAATAATACAAC+TGG | + | chr3.2:76807741-76807760 | None:intergenic | 30.0% | |
| GATAGAAATTTCAGAATGAG+TGG | + | chr3.2:76807385-76807404 | None:intergenic | 30.0% | |
| GATTCTACTATGTTTCTCAA+TGG | - | chr3.2:76807035-76807054 | MS.gene06745:intron | 30.0% | |
| GGTAAATTTGAAAACATGTC+TGG | - | chr3.2:76808771-76808790 | MS.gene06745:intron | 30.0% | |
| GTCTTCCATCAATAATTTCT+GGG | + | chr3.2:76809138-76809157 | None:intergenic | 30.0% | |
| TATAGGTACATGGTCAAAAT+AGG | - | chr3.2:76808016-76808035 | MS.gene06745:intron | 30.0% | |
| TCAATAATCTCTCTTCACTT+TGG | - | chr3.2:76808685-76808704 | MS.gene06745:intron | 30.0% | |
| TCATATTCAAGTATGAAGCA+CGG | + | chr3.2:76806913-76806932 | None:intergenic | 30.0% | |
| TTACCTAAAAGTAACATTCC+CGG | + | chr3.2:76808756-76808775 | None:intergenic | 30.0% | |
| TTATATTCCATAATCAGAGG+TGG | + | chr3.2:76808909-76808928 | None:intergenic | 30.0% | |
| ! | ACGAATGGTTTATATTTCTG+CGG | + | chr3.2:76807130-76807149 | None:intergenic | 30.0% |
| ! | AGACTAGGCTTTTAAATTTC+TGG | + | chr3.2:76808142-76808161 | None:intergenic | 30.0% |
| ! | GACTAGGCTTTTAAATTTCT+GGG | + | chr3.2:76808141-76808160 | None:intergenic | 30.0% |
| ! | GAGCTCTGATATTAGTTTAT+AGG | - | chr3.2:76807999-76808018 | MS.gene06745:intron | 30.0% |
| ! | TACAACTAGTACTGAAAGAT+TGG | - | chr3.2:76807225-76807244 | MS.gene06745:intron | 30.0% |
| ! | TGGTCCGCATTTTATATTTT+GGG | - | chr3.2:76808791-76808810 | MS.gene06745:intron | 30.0% |
| ! | TTATCCTTTTGTCGTTATGA+TGG | - | chr3.2:76807793-76807812 | MS.gene06745:intron | 30.0% |
| ! | TTGTTGTTAATTAAGCAAGG+TGG | + | chr3.2:76809068-76809087 | None:intergenic | 30.0% |
| !! | TATGTATATTCTGTTTCTGC+CGG | + | chr3.2:76807485-76807504 | None:intergenic | 30.0% |
| !!! | TTTTTTCCTTTCTCTAGGTA+TGG | - | chr3.2:76807080-76807099 | MS.gene06745:intron | 30.0% |
| AAAGTAGAGATCCTATGCAT+CGG | + | chr3.2:76807837-76807856 | None:intergenic | 35.0% | |
| AATATAAACCATTCGTGAGC+AGG | - | chr3.2:76807134-76807153 | MS.gene06745:intron | 35.0% | |
| AATTTCAGAATGAGTGGTTG+AGG | + | chr3.2:76807379-76807398 | None:intergenic | 35.0% | |
| AGATTGATTACAAGAGGAAC+AGG | + | chr3.2:76806432-76806451 | None:intergenic | 35.0% | |
| AGCAATTCCAATGAGAAACA+TGG | + | chr3.2:76806703-76806722 | None:intergenic | 35.0% | |
| AGTATATCCACCTCTGATTA+TGG | - | chr3.2:76808899-76808918 | MS.gene06745:intron | 35.0% | |
| ATCCGTTACCATATAACTAG+TGG | + | chr3.2:76808246-76808265 | None:intergenic | 35.0% | |
| ATGAACGGAACTGAAAACAA+CGG | - | chr3.2:76806306-76806325 | MS.gene06745:CDS | 35.0% | |
| ATGAGCATATTCTAAGCATC+AGG | - | chr3.2:76807263-76807282 | MS.gene06745:intron | 35.0% | |
| ATTAACTTTAAGCCAGCAGA+AGG | + | chr3.2:76808379-76808398 | None:intergenic | 35.0% | |
| ATTAGTGGCCTAAGAATTCA+AGG | + | chr3.2:76808530-76808549 | None:intergenic | 35.0% | |
| CAAATCACTTTCAGATGTCT+CGG | - | chr3.2:76809258-76809277 | MS.gene06745:CDS | 35.0% | |
| GAAATTATTGATGGAAGACC+AGG | - | chr3.2:76809139-76809158 | MS.gene06745:intron | 35.0% | |
| GAATATGCTCATTGTCATCA+AGG | + | chr3.2:76807255-76807274 | None:intergenic | 35.0% | |
| GCCTTAACGAAAACAATCTA+AGG | + | chr3.2:76808976-76808995 | None:intergenic | 35.0% | |
| GGTCTTCCATCAATAATTTC+TGG | + | chr3.2:76809139-76809158 | None:intergenic | 35.0% | |
| GTCATTTAGTATATTTGGGG+TGG | - | chr3.2:76807758-76807777 | MS.gene06745:intron | 35.0% | |
| GTTAAGGCTTGCACTTAATT+TGG | - | chr3.2:76808988-76809007 | MS.gene06745:intron | 35.0% | |
| TAAATGATGCGAGAAAGAAG+TGG | - | chr3.2:76808830-76808849 | MS.gene06745:intron | 35.0% | |
| TCAGATAGCATGAGAATGAA+AGG | + | chr3.2:76808876-76808895 | None:intergenic | 35.0% | |
| TCCGTTACCATATAACTAGT+GGG | + | chr3.2:76808245-76808264 | None:intergenic | 35.0% | |
| TCTATTAGTTCGTTGCTTGA+GGG | - | chr3.2:76807572-76807591 | MS.gene06745:intron | 35.0% | |
| TTCAACCAATTGTCAAACCA+AGG | - | chr3.2:76808491-76808510 | MS.gene06745:CDS | 35.0% | |
| TTGTTAATTAAGCAAGGTGG+AGG | + | chr3.2:76809065-76809084 | None:intergenic | 35.0% | |
| ! | AACTAGTACTGAAAGATTGG+AGG | - | chr3.2:76807228-76807247 | MS.gene06745:intron | 35.0% |
| ! | AATGTCCTTGGTTTGACAAT+TGG | + | chr3.2:76808499-76808518 | None:intergenic | 35.0% |
| ! | ATATGATGGGAAACAGTGTT+AGG | + | chr3.2:76808272-76808291 | None:intergenic | 35.0% |
| ! | ATCAATAATTTCTGGGTGGA+GGG | + | chr3.2:76809131-76809150 | None:intergenic | 35.0% |
| ! | ATGCATGAGTTGTTGATAAG+TGG | - | chr3.2:76809322-76809341 | MS.gene06745:CDS | 35.0% |
| ! | CTGGTCCGCATTTTATATTT+TGG | - | chr3.2:76808790-76808809 | MS.gene06745:intron | 35.0% |
| ! | GCCTTAGATTGTTTTCGTTA+AGG | - | chr3.2:76808972-76808991 | MS.gene06745:intron | 35.0% |
| ! | GCTGGTAATTGAATCTTTTG+TGG | - | chr3.2:76809165-76809184 | MS.gene06745:intron | 35.0% |
| ! | TCATGTGCATCGTTTTACAA+AGG | - | chr3.2:76808329-76808348 | MS.gene06745:intron | 35.0% |
| ! | TCTAAGGCAATATTGAGTCT+AGG | + | chr3.2:76808960-76808979 | None:intergenic | 35.0% |
| ! | TTCCATCAATAATTTCTGGG+TGG | + | chr3.2:76809135-76809154 | None:intergenic | 35.0% |
| ! | TTTAGTATATTTGGGGTGGA+AGG | - | chr3.2:76807762-76807781 | MS.gene06745:intron | 35.0% |
| !! | AAGAGAGATTATTGACTCAG+AGG | + | chr3.2:76808680-76808699 | None:intergenic | 35.0% |
| !! | AGAGAAGTTGATGTTAAGTC+AGG | - | chr3.2:76807193-76807212 | MS.gene06745:intron | 35.0% |
| !! | GAGAAGTTGATGTTAAGTCA+GGG | - | chr3.2:76807194-76807213 | MS.gene06745:intron | 35.0% |
| !! | TTATTGACTCAGAGGAATCT+TGG | + | chr3.2:76808672-76808691 | None:intergenic | 35.0% |
| !!! | AGTTTTACATGGACTAGACT+AGG | + | chr3.2:76808157-76808176 | None:intergenic | 35.0% |
| !!! | GCTGGTTAGTTAGTTTTACA+TGG | + | chr3.2:76808168-76808187 | None:intergenic | 35.0% |
| ACCAGAAGAACCAAACATCA+AGG | + | chr3.2:76808426-76808445 | None:intergenic | 40.0% | |
| ACTTATCAGTTGAGCAAGCA+TGG | + | chr3.2:76807932-76807951 | None:intergenic | 40.0% | |
| AGTGCTTAAGCCACAAGAAT+TGG | - | chr3.2:76808630-76808649 | MS.gene06745:intron | 40.0% | |
| ATGTAATTCGCATGTGTCAG+TGG | + | chr3.2:76806822-76806841 | None:intergenic | 40.0% | |
| CAAAGACCATACCTAGAGAA+AGG | + | chr3.2:76807089-76807108 | None:intergenic | 40.0% | |
| CAGTATCAACATCCCAGATA+TGG | + | chr3.2:76807543-76807562 | None:intergenic | 40.0% | |
| CCCCACTAGTTATATGGTAA+CGG | - | chr3.2:76808241-76808260 | MS.gene06745:intron | 40.0% | |
| CCGTTACCATATAACTAGTG+GGG | + | chr3.2:76808244-76808263 | None:intergenic | 40.0% | |
| CTAAGCATCAGGATTATTGG+TGG | - | chr3.2:76807274-76807293 | MS.gene06745:intron | 40.0% | |
| CTCCACCCAGAAATTATTGA+TGG | - | chr3.2:76809130-76809149 | MS.gene06745:intron | 40.0% | |
| CTCTTAAACTCCCAATCTCA+AGG | + | chr3.2:76807177-76807196 | None:intergenic | 40.0% | |
| CTTGCCATCATAACGACAAA+AGG | + | chr3.2:76807800-76807819 | None:intergenic | 40.0% | |
| CTTTCAGTACTAGTTGTAGC+AGG | + | chr3.2:76807223-76807242 | None:intergenic | 40.0% | |
| CTTTCTCTAGGTATGGTCTT+TGG | - | chr3.2:76807087-76807106 | MS.gene06745:intron | 40.0% | |
| GATTCTGCCATGTTTCTCAT+TGG | - | chr3.2:76806693-76806712 | MS.gene06745:intron | 40.0% | |
| GGATGTTGATACTGTTAGGA+AGG | - | chr3.2:76807549-76807568 | MS.gene06745:intron | 40.0% | |
| GGTACATGGTCAAAATAGGA+AGG | - | chr3.2:76808020-76808039 | MS.gene06745:intron | 40.0% | |
| GTCTATTAGTTCGTTGCTTG+AGG | - | chr3.2:76807571-76807590 | MS.gene06745:intron | 40.0% | |
| GTGAGATTGCATGCAATATG+TGG | + | chr3.2:76807407-76807426 | None:intergenic | 40.0% | |
| GTGTAAGATACACATTGCAC+CGG | - | chr3.2:76807463-76807482 | MS.gene06745:intron | 40.0% | |
| TAAGGCTTCAACAAAGTAGC+AGG | + | chr3.2:76809224-76809243 | None:intergenic | 40.0% | |
| TAATGGCCCCACTAGTTATA+TGG | - | chr3.2:76808235-76808254 | MS.gene06745:intron | 40.0% | |
| TATGATGTAGAGTTTGGCTG+TGG | - | chr3.2:76806967-76806986 | MS.gene06745:intron | 40.0% | |
| TCGACAAGTTCCTTGATGTT+TGG | - | chr3.2:76808413-76808432 | MS.gene06745:CDS | 40.0% | |
| TGGCTAGAGCTTATACTACT+CGG | + | chr3.2:76807721-76807740 | None:intergenic | 40.0% | |
| TTAATTAAGCAAGGTGGAGG+AGG | + | chr3.2:76809062-76809081 | None:intergenic | 40.0% | |
| TTCTTGTGGCTTAAGCACTT+AGG | + | chr3.2:76808629-76808648 | None:intergenic | 40.0% | |
| TTTGTGGTAGATGTACCAGA+GGG | - | chr3.2:76809181-76809200 | MS.gene06745:intron | 40.0% | |
| ! | ACGCATTTCATCAGAAGTGT+CGG | + | chr3.2:76806770-76806789 | None:intergenic | 40.0% |
| ! | CATCAATAATTTCTGGGTGG+AGG | + | chr3.2:76809132-76809151 | None:intergenic | 40.0% |
| ! | CTTTGGAGATGTTCCTTTCA+AGG | - | chr3.2:76808702-76808721 | MS.gene06745:intron | 40.0% |
| ! | GCTTAAGCACTTAGGCTTTT+GGG | + | chr3.2:76808621-76808640 | None:intergenic | 40.0% |
| ! | TCTGGGATGTTGATACTGTT+AGG | - | chr3.2:76807545-76807564 | MS.gene06745:intron | 40.0% |
| ! | TTTTGTGGTAGATGTACCAG+AGG | - | chr3.2:76809180-76809199 | MS.gene06745:intron | 40.0% |
| !! | GCACTGACACTTTTAATGGA+AGG | - | chr3.2:76806552-76806571 | MS.gene06745:intron | 40.0% |
| !! | GGATTATTGGTGGTGATCAT+AGG | - | chr3.2:76807284-76807303 | MS.gene06745:intron | 40.0% |
| !! | TCCATTAAAAGTGTCAGTGC+TGG | + | chr3.2:76806552-76806571 | None:intergenic | 40.0% |
| !! | TCCTTGATGTTTGGTTCTTC+TGG | - | chr3.2:76808422-76808441 | MS.gene06745:CDS | 40.0% |
| !!! | TCCAGCACTGACACTTTTAA+TGG | - | chr3.2:76806548-76806567 | MS.gene06745:intron | 40.0% |
| !!! | TGTCCGGGAATGTTACTTTT+AGG | - | chr3.2:76808750-76808769 | MS.gene06745:intron | 40.0% |
| AAAGTAGCAGGTCTCATCCT+TGG | + | chr3.2:76809212-76809231 | None:intergenic | 45.0% | |
| AACTCATGCATCCGATCAAG+TGG | + | chr3.2:76809313-76809332 | None:intergenic | 45.0% | |
| ACCTCACTGAACCACTTGAT+CGG | - | chr3.2:76809299-76809318 | MS.gene06745:CDS | 45.0% | |
| AGACATCACAATCAACAGCC+TGG | - | chr3.2:76806363-76806382 | MS.gene06745:CDS | 45.0% | |
| AGTGTTTAACACCACGGAGA+TGG | - | chr3.2:76806329-76806348 | MS.gene06745:CDS | 45.0% | |
| ATGCATCGGAAACAAGTACC+AGG | + | chr3.2:76807823-76807842 | None:intergenic | 45.0% | |
| CACTTTCAGATGTCTCGGAA+GGG | - | chr3.2:76809263-76809282 | MS.gene06745:CDS | 45.0% | |
| CTTCTGATGAAATGCGTGTC+TGG | - | chr3.2:76806773-76806792 | MS.gene06745:intron | 45.0% | |
| GAGATGCAGTGAAAGTTTGC+AGG | + | chr3.2:76807892-76807911 | None:intergenic | 45.0% | |
| GAGCTCAGATCTTTGAGCTA+TGG | + | chr3.2:76807985-76808004 | None:intergenic | 45.0% | |
| GATTCAATTACCAGCGTTCC+TGG | + | chr3.2:76809160-76809179 | None:intergenic | 45.0% | |
| GGTACTTGTTTCCGATGCAT+AGG | - | chr3.2:76807823-76807842 | MS.gene06745:intron | 45.0% | |
| TCACTTTCAGATGTCTCGGA+AGG | - | chr3.2:76809262-76809281 | MS.gene06745:CDS | 45.0% | |
| TCTAGGTATGGTCTTTGGTG+AGG | - | chr3.2:76807092-76807111 | MS.gene06745:intron | 45.0% | |
| TGAGGGGAAACCTTGAGATT+GGG | - | chr3.2:76807164-76807183 | MS.gene06745:intron | 45.0% | |
| TTATTCCCGAGAACACTGTC+CGG | - | chr3.2:76808734-76808753 | MS.gene06745:intron | 45.0% | |
| TTGTGGTAGATGTACCAGAG+GGG | - | chr3.2:76809182-76809201 | MS.gene06745:intron | 45.0% | |
| ! | CAACGGAGTGTTTAACACCA+CGG | - | chr3.2:76806323-76806342 | MS.gene06745:CDS | 45.0% |
| ! | GGCTTAAGCACTTAGGCTTT+TGG | + | chr3.2:76808622-76808641 | None:intergenic | 45.0% |
| ! | TGGTGGTGATCATAGGCTTA+GGG | - | chr3.2:76807291-76807310 | MS.gene06745:intron | 45.0% |
| !! | GAAGAACACTGATTCTGTCC+AGG | + | chr3.2:76806384-76806403 | None:intergenic | 45.0% |
| !! | TTGGTGGTGATCATAGGCTT+AGG | - | chr3.2:76807290-76807309 | MS.gene06745:intron | 45.0% |
| ACATTCCCGGACAGTGTTCT+CGG | + | chr3.2:76808743-76808762 | None:intergenic | 50.0% | |
| ACCAGCTCACTGCTACACTT+AGG | - | chr3.2:76808182-76808201 | MS.gene06745:intron | 50.0% | |
| ACCTAAGTGTAGCAGTGAGC+TGG | + | chr3.2:76808186-76808205 | None:intergenic | 50.0% | |
| AGGTATGGTCTTTGGTGAGG+AGG | - | chr3.2:76807095-76807114 | MS.gene06745:intron | 50.0% | |
| ATGAAGCACGGCACATACAC+TGG | + | chr3.2:76806901-76806920 | None:intergenic | 50.0% | |
| ATTAAGCAAGGTGGAGGAGG+AGG | + | chr3.2:76809059-76809078 | None:intergenic | 50.0% | |
| GTGAGGGGAAACCTTGAGAT+TGG | - | chr3.2:76807163-76807182 | MS.gene06745:intron | 50.0% | |
| TATTCCCGAGAACACTGTCC+GGG | - | chr3.2:76808735-76808754 | MS.gene06745:intron | 50.0% | |
| TCATCCTTGGTATTCCCCTC+TGG | + | chr3.2:76809199-76809218 | None:intergenic | 50.0% | |
| TCCGATCAAGTGGTTCAGTG+AGG | + | chr3.2:76809303-76809322 | None:intergenic | 50.0% | |
| TCTGATGTACTCCATCTCCG+TGG | + | chr3.2:76806343-76806362 | None:intergenic | 50.0% | |
| TGGAAGACACCAACACGTGT+CGG | + | chr3.2:76806802-76806821 | None:intergenic | 50.0% | |
| TGTACCAGAGGGGAATACCA+AGG | - | chr3.2:76809192-76809211 | MS.gene06745:intron | 50.0% | |
| TGTCGTTATGATGGCAAGCC+TGG | - | chr3.2:76807802-76807821 | MS.gene06745:intron | 50.0% | |
| !! | TAAAGTGTCGGTCCTTCTGC+TGG | - | chr3.2:76808364-76808383 | MS.gene06745:CDS | 50.0% |
| ACCACACACCTGCTCACGAA+TGG | + | chr3.2:76807145-76807164 | None:intergenic | 55.0% | |
| ACCATTCGTGAGCAGGTGTG+TGG | - | chr3.2:76807141-76807160 | MS.gene06745:intron | 55.0% | |
| CATTCCCGGACAGTGTTCTC+GGG | + | chr3.2:76808742-76808761 | None:intergenic | 55.0% | |
| GTCTGGTATCCGACACGTGT+TGG | - | chr3.2:76806790-76806809 | MS.gene06745:intron | 55.0% | |
| TGATGGAAGACCAGGAACGC+TGG | - | chr3.2:76809147-76809166 | MS.gene06745:intron | 55.0% | |
| CGTGAGCAGGTGTGTGGTGA+GGG | - | chr3.2:76807147-76807166 | MS.gene06745:intron | 60.0% | |
| GTGAGCAGGTGTGTGGTGAG+GGG | - | chr3.2:76807148-76807167 | MS.gene06745:intron | 60.0% | |
| TCGTGAGCAGGTGTGTGGTG+AGG | - | chr3.2:76807146-76807165 | MS.gene06745:intron | 60.0% | |
| ! | CTCGGAAGGGCATGCTGTGC+AGG | - | chr3.2:76809276-76809295 | MS.gene06745:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 76806297 | 76809348 | 76806297 | ID=MS.gene06745 |
| chr3.2 | mRNA | 76806297 | 76809348 | 76806297 | ID=MS.gene06745.t1;Parent=MS.gene06745 |
| chr3.2 | exon | 76809205 | 76809348 | 76809205 | ID=MS.gene06745.t1.exon1;Parent=MS.gene06745.t1 |
| chr3.2 | CDS | 76809205 | 76809348 | 76809205 | ID=cds.MS.gene06745.t1;Parent=MS.gene06745.t1 |
| chr3.2 | exon | 76808333 | 76808548 | 76808333 | ID=MS.gene06745.t1.exon2;Parent=MS.gene06745.t1 |
| chr3.2 | CDS | 76808333 | 76808548 | 76808333 | ID=cds.MS.gene06745.t1;Parent=MS.gene06745.t1 |
| chr3.2 | exon | 76806297 | 76806536 | 76806297 | ID=MS.gene06745.t1.exon3;Parent=MS.gene06745.t1 |
| chr3.2 | CDS | 76806297 | 76806536 | 76806297 | ID=cds.MS.gene06745.t1;Parent=MS.gene06745.t1 |
| Gene Sequence |
| Protein sequence |
