Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06784.t1 | XP_013461494.1 | 93.2 | 324 | 8 | 3 | 1 | 324 | 1 | 310 | 1.60E-160 | 575.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06784.t1 | Q9LY00 | 37.2 | 301 | 155 | 9 | 13 | 297 | 7 | 289 | 5.5e-37 | 156.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06784.t1 | A0A072V0I2 | 93.2 | 324 | 8 | 3 | 1 | 324 | 1 | 310 | 1.1e-160 | 575.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene06784.t1 | TF | WRKY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049409 | MS.gene06784 | 0.963624 | 2.59E-122 | -1.69E-46 |
| MS.gene050148 | MS.gene06784 | 0.820821 | 5.60E-53 | -1.69E-46 |
| MS.gene050645 | MS.gene06784 | 0.801476 | 8.84E-49 | -1.69E-46 |
| MS.gene058477 | MS.gene06784 | 0.811663 | 6.25E-51 | -1.69E-46 |
| MS.gene05861 | MS.gene06784 | 0.852229 | 5.29E-61 | -1.69E-46 |
| MS.gene05862 | MS.gene06784 | 0.848952 | 4.42E-60 | -1.69E-46 |
| MS.gene05969 | MS.gene06784 | 0.848972 | 4.36E-60 | -1.69E-46 |
| MS.gene059774 | MS.gene06784 | 0.823492 | 1.35E-53 | -1.69E-46 |
| MS.gene060697 | MS.gene06784 | 0.821394 | 4.13E-53 | -1.69E-46 |
| MS.gene061047 | MS.gene06784 | 0.826749 | 2.29E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06784.t1 | MTR_3g093830 | 93.210 | 324 | 8 | 3 | 1 | 324 | 1 | 310 | 0.0 | 603 |
| MS.gene06784.t1 | MTR_5g067700 | 40.816 | 294 | 101 | 11 | 5 | 289 | 5 | 234 | 1.50e-53 | 176 |
| MS.gene06784.t1 | MTR_7g073380 | 39.000 | 200 | 93 | 5 | 17 | 210 | 15 | 191 | 7.10e-38 | 137 |
| MS.gene06784.t1 | MTR_7g073430 | 37.915 | 211 | 100 | 7 | 7 | 210 | 4 | 190 | 2.68e-35 | 129 |
| MS.gene06784.t1 | MTR_0002s1250 | 38.806 | 201 | 99 | 6 | 18 | 216 | 8 | 186 | 1.52e-34 | 127 |
| MS.gene06784.t1 | MTR_8g005750 | 38.571 | 210 | 97 | 6 | 18 | 226 | 6 | 184 | 4.60e-31 | 118 |
| MS.gene06784.t1 | MTR_3g090860 | 33.190 | 232 | 123 | 9 | 15 | 229 | 5 | 221 | 1.08e-24 | 102 |
| MS.gene06784.t1 | MTR_2g075680 | 32.819 | 259 | 132 | 10 | 14 | 256 | 13 | 245 | 1.29e-24 | 101 |
| MS.gene06784.t1 | MTR_2g075690 | 33.772 | 228 | 125 | 7 | 3 | 222 | 5 | 214 | 2.71e-24 | 100 |
| MS.gene06784.t1 | MTR_2g075700 | 34.783 | 230 | 115 | 8 | 9 | 222 | 7 | 217 | 4.35e-23 | 97.4 |
| MS.gene06784.t1 | MTR_8g032510 | 34.091 | 220 | 107 | 9 | 18 | 226 | 9 | 201 | 7.66e-23 | 96.7 |
| MS.gene06784.t1 | MTR_7g117200 | 30.097 | 206 | 126 | 4 | 7 | 212 | 2 | 189 | 3.29e-21 | 92.8 |
| MS.gene06784.t1 | MTR_8g027860 | 56.716 | 67 | 29 | 0 | 134 | 200 | 129 | 195 | 1.73e-20 | 90.9 |
| MS.gene06784.t1 | MTR_8g099350 | 33.679 | 193 | 106 | 6 | 17 | 200 | 12 | 191 | 6.76e-20 | 89.4 |
| MS.gene06784.t1 | MTR_2g075750 | 42.529 | 87 | 49 | 1 | 140 | 226 | 27 | 112 | 3.39e-19 | 84.0 |
| MS.gene06784.t1 | MTR_2g075610 | 50.794 | 63 | 31 | 0 | 142 | 204 | 30 | 92 | 1.52e-18 | 82.4 |
| MS.gene06784.t1 | MTR_5g067680 | 35.938 | 128 | 75 | 1 | 87 | 207 | 141 | 268 | 3.33e-18 | 84.7 |
| MS.gene06784.t1 | MTR_5g073620 | 39.706 | 68 | 41 | 0 | 142 | 209 | 673 | 740 | 1.14e-12 | 69.3 |
| MS.gene06784.t1 | MTR_7g028415 | 46.377 | 69 | 33 | 2 | 131 | 199 | 84 | 148 | 4.05e-12 | 64.3 |
| MS.gene06784.t1 | MTR_7g028710 | 46.377 | 69 | 33 | 2 | 131 | 199 | 84 | 148 | 4.05e-12 | 64.3 |
| MS.gene06784.t1 | MTR_4g127040 | 40.000 | 90 | 44 | 2 | 125 | 206 | 221 | 308 | 6.59e-12 | 65.9 |
| MS.gene06784.t1 | MTR_7g079010 | 34.579 | 107 | 58 | 3 | 102 | 206 | 109 | 205 | 7.05e-12 | 64.3 |
| MS.gene06784.t1 | MTR_8g098945 | 46.154 | 65 | 33 | 1 | 134 | 198 | 122 | 184 | 7.58e-12 | 65.1 |
| MS.gene06784.t1 | MTR_8g028565 | 41.026 | 78 | 41 | 2 | 125 | 199 | 136 | 211 | 1.29e-11 | 65.1 |
| MS.gene06784.t1 | MTR_1g009613 | 38.462 | 91 | 44 | 3 | 125 | 205 | 238 | 326 | 1.47e-11 | 65.1 |
| MS.gene06784.t1 | MTR_5g043880 | 38.372 | 86 | 49 | 2 | 142 | 227 | 125 | 206 | 2.02e-11 | 63.9 |
| MS.gene06784.t1 | MTR_8g096730 | 32.110 | 109 | 64 | 3 | 90 | 198 | 26 | 124 | 7.05e-11 | 60.1 |
| MS.gene06784.t1 | MTR_7g062220 | 52.632 | 57 | 24 | 1 | 142 | 198 | 125 | 178 | 8.79e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06784.t1 | AT3G56400 | 44.144 | 222 | 106 | 5 | 13 | 234 | 7 | 210 | 1.54e-50 | 170 |
| MS.gene06784.t1 | AT2G40750 | 34.259 | 324 | 185 | 7 | 10 | 310 | 8 | 326 | 1.75e-46 | 160 |
| MS.gene06784.t1 | AT5G24110 | 34.715 | 193 | 89 | 7 | 13 | 200 | 12 | 172 | 5.10e-23 | 97.4 |
| MS.gene06784.t1 | AT2G46400 | 30.357 | 224 | 102 | 5 | 13 | 226 | 4 | 183 | 8.87e-22 | 93.6 |
| MS.gene06784.t1 | AT4G11070 | 31.280 | 211 | 121 | 7 | 13 | 208 | 7 | 208 | 1.28e-21 | 93.6 |
| MS.gene06784.t1 | AT1G66550 | 34.054 | 185 | 97 | 4 | 18 | 202 | 10 | 169 | 2.74e-21 | 91.7 |
| MS.gene06784.t1 | AT1G66550 | 34.595 | 185 | 91 | 6 | 18 | 202 | 10 | 164 | 6.78e-21 | 90.5 |
| MS.gene06784.t1 | AT5G22570 | 28.704 | 216 | 114 | 4 | 18 | 217 | 11 | 202 | 7.31e-20 | 88.2 |
| MS.gene06784.t1 | AT1G66560 | 27.642 | 246 | 140 | 6 | 11 | 250 | 3 | 216 | 7.38e-20 | 87.4 |
| MS.gene06784.t1 | AT1G66600 | 29.752 | 242 | 136 | 5 | 18 | 259 | 10 | 217 | 9.35e-20 | 87.0 |
| MS.gene06784.t1 | AT5G01900 | 32.973 | 185 | 100 | 4 | 18 | 201 | 9 | 170 | 3.40e-19 | 85.9 |
| MS.gene06784.t1 | AT4G11070 | 29.126 | 206 | 100 | 6 | 13 | 208 | 7 | 176 | 1.25e-18 | 84.7 |
| MS.gene06784.t1 | AT2G40740 | 44.186 | 86 | 42 | 1 | 142 | 221 | 174 | 259 | 2.38e-18 | 84.0 |
| MS.gene06784.t1 | AT2G40740 | 44.186 | 86 | 42 | 1 | 142 | 221 | 183 | 268 | 3.01e-18 | 84.0 |
| MS.gene06784.t1 | AT4G23810 | 50.704 | 71 | 34 | 1 | 142 | 211 | 159 | 229 | 4.84e-18 | 83.6 |
| MS.gene06784.t1 | AT5G45260 | 35.714 | 154 | 92 | 4 | 47 | 198 | 1117 | 1265 | 2.54e-16 | 80.5 |
| MS.gene06784.t1 | AT1G80590 | 32.432 | 185 | 77 | 5 | 18 | 202 | 10 | 146 | 1.13e-14 | 72.8 |
| MS.gene06784.t1 | AT4G23550 | 49.153 | 59 | 28 | 1 | 140 | 198 | 139 | 195 | 7.37e-12 | 65.5 |
| MS.gene06784.t1 | AT5G52830 | 41.772 | 79 | 40 | 2 | 125 | 199 | 145 | 221 | 7.76e-12 | 65.9 |
| MS.gene06784.t1 | AT5G13080 | 43.243 | 74 | 38 | 2 | 126 | 199 | 53 | 122 | 2.48e-11 | 61.2 |
| MS.gene06784.t1 | AT2G46130 | 42.029 | 69 | 35 | 2 | 140 | 206 | 29 | 94 | 2.55e-11 | 60.5 |
| MS.gene06784.t1 | AT4G01250 | 38.961 | 77 | 42 | 3 | 125 | 198 | 109 | 183 | 5.68e-11 | 62.8 |
| MS.gene06784.t1 | AT1G69310 | 30.216 | 139 | 78 | 5 | 96 | 229 | 97 | 221 | 8.05e-11 | 62.4 |
| MS.gene06784.t1 | AT1G69310 | 30.216 | 139 | 78 | 5 | 96 | 229 | 97 | 221 | 8.05e-11 | 62.4 |
| MS.gene06784.t1 | AT1G69310 | 30.216 | 139 | 78 | 5 | 96 | 229 | 97 | 221 | 8.05e-11 | 62.4 |
Find 61 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAATCTTGAAATTGATTT+TGG | 0.027971 | 3.3:+78119548 | MS.gene06784:CDS |
| TATGTAATTTGGTACATTTC+TGG | 0.119421 | 3.3:-78119215 | None:intergenic |
| TTGTTGGCAGTGACAGTTTC+AGG | 0.206708 | 3.3:-78117707 | None:intergenic |
| TGCAACCTTGGTCATGCTTC+CGG | 0.212153 | 3.3:-78119157 | None:intergenic |
| CATTCTCTGAAGATACTAAT+TGG | 0.227820 | 3.3:+78119288 | MS.gene06784:CDS |
| TGATGTTACTGACAACTTAT+TGG | 0.245112 | 3.3:+78119454 | MS.gene06784:CDS |
| GCAACCTTGGTCATGCTTCC+GGG | 0.281835 | 3.3:-78119156 | None:intergenic |
| TTCTATCAATTGTACCTGTT+TGG | 0.295646 | 3.3:-78119186 | None:intergenic |
| TTAAAATCAGACCACAAATT+AGG | 0.299410 | 3.3:-78119479 | None:intergenic |
| CAGAATCATGTGAATCATTC+AGG | 0.322565 | 3.3:+78117923 | MS.gene06784:CDS |
| CATGTGAATCATTCAGGTTC+AGG | 0.330373 | 3.3:+78117929 | MS.gene06784:CDS |
| AGTAGTATTGTCGTCGTTGT+TGG | 0.342310 | 3.3:-78119423 | None:intergenic |
| AAGAATCCTGTTTGTTCTGA+TGG | 0.357623 | 3.3:+78117797 | MS.gene06784:CDS |
| GTCTCCTTCTGTTAAGGAAT+TGG | 0.359709 | 3.3:+78117820 | MS.gene06784:CDS |
| GTTTGGTTGCTTTGCAACCT+TGG | 0.376612 | 3.3:-78119169 | None:intergenic |
| TAATTTGCAGGAGTTACTTC+AGG | 0.382346 | 3.3:+78119129 | MS.gene06784:intron |
| GAAAGCCAATGTATGTAATT+TGG | 0.392701 | 3.3:-78119226 | None:intergenic |
| TCAGAGAATGAGACCATTTG+TGG | 0.397937 | 3.3:-78119275 | None:intergenic |
| TGATGGGTCTCCTTCTGTTA+AGG | 0.399624 | 3.3:+78117814 | MS.gene06784:CDS |
| ACTCATAAAAGAGCTTCTTC+AGG | 0.399737 | 3.3:+78117739 | MS.gene06784:CDS |
| CAATTGGTGACACTCATTCC+TGG | 0.409828 | 3.3:+78118267 | MS.gene06784:CDS |
| GTAGTATTGTCGTCGTTGTT+GGG | 0.410207 | 3.3:-78119422 | None:intergenic |
| ATTCTCTGAAGATACTAATT+GGG | 0.419258 | 3.3:+78119289 | MS.gene06784:CDS |
| CCTCTTCGATCCTTTGTAGT+TGG | 0.426598 | 3.3:-78118034 | None:intergenic |
| ACCATAGTCTCTAAAACAAT+TGG | 0.428053 | 3.3:+78118251 | MS.gene06784:CDS |
| TTCAGGGGAACATGGTTCAT+TGG | 0.430865 | 3.3:+78117946 | MS.gene06784:CDS |
| AGAATCCTGTTTGTTCTGAT+GGG | 0.439454 | 3.3:+78117798 | MS.gene06784:CDS |
| ACCTTGGGAAATTAGAATTG+AGG | 0.441878 | 3.3:-78118313 | None:intergenic |
| TCCTTCTGTTAAGGAATTGG+TGG | 0.442137 | 3.3:+78117823 | MS.gene06784:CDS |
| AGACCATTTGTGGAGTTTGT+AGG | 0.471099 | 3.3:-78119265 | None:intergenic |
| CTTCTGACCGTACTTTCTCC+AGG | 0.478180 | 3.3:-78118285 | None:intergenic |
| ACTTATTGGATCCTAATTTG+TGG | 0.485951 | 3.3:+78119468 | MS.gene06784:CDS |
| CACCCTACAAACTCCACAAA+TGG | 0.486229 | 3.3:+78119262 | MS.gene06784:CDS |
| ATGTGAATCATTCAGGTTCA+GGG | 0.513638 | 3.3:+78117930 | MS.gene06784:CDS |
| CTCATAAAAGAGCTTCTTCA+GGG | 0.513650 | 3.3:+78117740 | MS.gene06784:CDS |
| CATTCAGGTTCAGGGGAACA+TGG | 0.514743 | 3.3:+78117938 | MS.gene06784:CDS |
| GCAGGAATACACAATATCCT+TGG | 0.514816 | 3.3:-78119516 | None:intergenic |
| AGGTTGCAAAGCAACCAAAC+AGG | 0.523803 | 3.3:+78119172 | MS.gene06784:CDS |
| GACCATTTGTGGAGTTTGTA+GGG | 0.524922 | 3.3:-78119264 | None:intergenic |
| AGGGGAACATGGTTCATTGG+TGG | 0.531988 | 3.3:+78117949 | MS.gene06784:CDS |
| GGAGACCCATCAGAACAAAC+AGG | 0.533380 | 3.3:-78117803 | None:intergenic |
| CACATGTTATTAGCTCAGAA+AGG | 0.537868 | 3.3:+78119378 | MS.gene06784:CDS |
| GAAGAGGTTCCTACAAAAGA+AGG | 0.538026 | 3.3:+78118050 | MS.gene06784:CDS |
| GCCACCAATTCCTTAACAGA+AGG | 0.556097 | 3.3:-78117824 | None:intergenic |
| TGAAGATTGTAGTTTAGATG+AGG | 0.565987 | 3.3:+78117895 | MS.gene06784:CDS |
| ATGTACCAAATTACATACAT+TGG | 0.567198 | 3.3:+78119221 | MS.gene06784:CDS |
| CTGGAGAAAGTACGGTCAGA+AGG | 0.567429 | 3.3:+78118286 | MS.gene06784:CDS |
| TCCTCAATTCTAATTTCCCA+AGG | 0.568294 | 3.3:+78118312 | MS.gene06784:CDS |
| GTCAGAACCTCCTTTGAGTG+AGG | 0.572819 | 3.3:-78119335 | None:intergenic |
| GGAGTTACTTCAGGTGCACC+CGG | 0.575709 | 3.3:+78119138 | MS.gene06784:intron |
| ACTCATTCCTGGAGAAAGTA+CGG | 0.586004 | 3.3:+78118278 | MS.gene06784:CDS |
| GAGATTGTCGCCAACTACAA+AGG | 0.592832 | 3.3:+78118024 | MS.gene06784:CDS |
| GAATTCTAATCCTCACTCAA+AGG | 0.633382 | 3.3:+78119325 | MS.gene06784:CDS |
| CATTTGTGGAGTTTGTAGGG+TGG | 0.641904 | 3.3:-78119261 | None:intergenic |
| TTCTAATCCTCACTCAAAGG+AGG | 0.641909 | 3.3:+78119328 | MS.gene06784:CDS |
| TTGTCAGTAACATCACTCCT+CGG | 0.646183 | 3.3:-78119446 | None:intergenic |
| TGTGAATCATTCAGGTTCAG+GGG | 0.655461 | 3.3:+78117931 | MS.gene06784:CDS |
| TGCACCCGGAAGCATGACCA+AGG | 0.656558 | 3.3:+78119152 | MS.gene06784:CDS |
| GCAGGAAAACAGATGAGACA+AGG | 0.694593 | 3.3:+78118228 | MS.gene06784:intron |
| CCAACTACAAAGGATCGAAG+AGG | 0.701163 | 3.3:+78118034 | MS.gene06784:CDS |
| ACGACGACAATACTACTCCG+AGG | 0.763721 | 3.3:+78119429 | MS.gene06784:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAACTAATTAG+TGG | - | chr3.3:78118973-78118992 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAACTAATTAGT+GGG | - | chr3.3:78118972-78118991 | None:intergenic | 10.0% |
| !! | GATATTTATTAAAATTGATT+TGG | + | chr3.3:78118580-78118599 | MS.gene06784:intron | 10.0% |
| !!! | AAATTTTACACTTAAATTTA+TGG | + | chr3.3:78118661-78118680 | MS.gene06784:intron | 10.0% |
| !! | ATATAATCTCATTTCAAAAT+CGG | - | chr3.3:78118928-78118947 | None:intergenic | 15.0% |
| !! | TTAAGTGTAAAATTTACTTT+GGG | - | chr3.3:78118656-78118675 | None:intergenic | 15.0% |
| !! | TTTAAGTGTAAAATTTACTT+TGG | - | chr3.3:78118657-78118676 | None:intergenic | 15.0% |
| !!! | AAAATCTTGAAATTGATTTT+GGG | + | chr3.3:78119549-78119568 | MS.gene06784:CDS | 15.0% |
| !! | GAATTGATTAACTAATTAGT+GGG | - | chr3.3:78119005-78119024 | None:intergenic | 20.0% |
| !! | TAAGTGTAAAATTTACTTTG+GGG | - | chr3.3:78118655-78118674 | None:intergenic | 20.0% |
| !! | TAGAAAACAAAAAAATCAAC+AGG | - | chr3.3:78118142-78118161 | None:intergenic | 20.0% |
| !! | TGAATTGATTAACTAATTAG+TGG | - | chr3.3:78119006-78119025 | None:intergenic | 20.0% |
| !! | TTACACTTAAATTTATGGTT+AGG | + | chr3.3:78118666-78118685 | MS.gene06784:intron | 20.0% |
| !! | TTAGATGTGTATAATTGATT+TGG | + | chr3.3:78118545-78118564 | MS.gene06784:intron | 20.0% |
| !! | TTATAGTTTCAACAAAATCA+TGG | + | chr3.3:78118855-78118874 | MS.gene06784:intron | 20.0% |
| !! | TTTATTCTTAATTATTGTGC+AGG | + | chr3.3:78118210-78118229 | MS.gene06784:intron | 20.0% |
| !!! | AAATCTTGAAATTGATTTTG+GGG | + | chr3.3:78119550-78119569 | MS.gene06784:CDS | 20.0% |
| !!! | CAAAATCTTGAAATTGATTT+TGG | + | chr3.3:78119548-78119567 | MS.gene06784:CDS | 20.0% |
| ! | ACTTGCTCATATTGTATAAA+TGG | - | chr3.3:78118414-78118433 | None:intergenic | 25.0% |
| ! | AGGAAAATAATGATTACCTT+GGG | - | chr3.3:78118331-78118350 | None:intergenic | 25.0% |
| ! | ATGTACCAAATTACATACAT+TGG | + | chr3.3:78119221-78119240 | MS.gene06784:CDS | 25.0% |
| ! | TATGTAATTTGGTACATTTC+TGG | - | chr3.3:78119218-78119237 | None:intergenic | 25.0% |
| ! | TCAACTCTTACAAAATCAAT+TGG | + | chr3.3:78118757-78118776 | MS.gene06784:intron | 25.0% |
| ! | TGAGATTATATACTATCAAG+TGG | + | chr3.3:78118937-78118956 | MS.gene06784:intron | 25.0% |
| ! | TTAAAATCAGACCACAAATT+AGG | - | chr3.3:78119482-78119501 | None:intergenic | 25.0% |
| !! | AAAATAGTACCTTCTTTTGT+AGG | - | chr3.3:78118062-78118081 | None:intergenic | 25.0% |
| !! | ATTCTCTGAAGATACTAATT+GGG | + | chr3.3:78119289-78119308 | MS.gene06784:CDS | 25.0% |
| !!! | AAGAAGGTACTATTTTTGTA+CGG | + | chr3.3:78118066-78118085 | MS.gene06784:intron | 25.0% |
| !!! | AGATTATAGAAGCATTTTAG+AGG | + | chr3.3:78118517-78118536 | MS.gene06784:intron | 25.0% |
| !!! | TAATTTGTGGTCTGATTTTA+AGG | + | chr3.3:78119481-78119500 | MS.gene06784:CDS | 25.0% |
| AAATCAGTAGAAAAAAGCAG+AGG | - | chr3.3:78118351-78118370 | None:intergenic | 30.0% | |
| ACTTATTGGATCCTAATTTG+TGG | + | chr3.3:78119468-78119487 | MS.gene06784:CDS | 30.0% | |
| ATATTGAAACATGCACATAG+CGG | - | chr3.3:78118804-78118823 | None:intergenic | 30.0% | |
| ATGTGCATGTTTCAATATCA+TGG | + | chr3.3:78118806-78118825 | MS.gene06784:intron | 30.0% | |
| CCTGCAAATTATCATTGAAA+AGG | - | chr3.3:78119120-78119139 | None:intergenic | 30.0% | |
| GAAAGCCAATGTATGTAATT+TGG | - | chr3.3:78119229-78119248 | None:intergenic | 30.0% | |
| GAGGAAAATAATGATTACCT+TGG | - | chr3.3:78118332-78118351 | None:intergenic | 30.0% | |
| TGAAGATTGTAGTTTAGATG+AGG | + | chr3.3:78117895-78117914 | MS.gene06784:CDS | 30.0% | |
| TGATGTTACTGACAACTTAT+TGG | + | chr3.3:78119454-78119473 | MS.gene06784:CDS | 30.0% | |
| TTCTATCAATTGTACCTGTT+TGG | - | chr3.3:78119189-78119208 | None:intergenic | 30.0% | |
| ! | CATTCTCTGAAGATACTAAT+TGG | + | chr3.3:78119288-78119307 | MS.gene06784:CDS | 30.0% |
| ! | TATGAGTAGCTTCTTTTTGT+TGG | - | chr3.3:78117726-78117745 | None:intergenic | 30.0% |
| !! | ACCATAGTCTCTAAAACAAT+TGG | + | chr3.3:78118251-78118270 | MS.gene06784:CDS | 30.0% |
| !! | CCTTTTCAATGATAATTTGC+AGG | + | chr3.3:78119117-78119136 | MS.gene06784:intron | 30.0% |
| !!! | ACCAATTGTTTTAGAGACTA+TGG | - | chr3.3:78118255-78118274 | None:intergenic | 30.0% |
| AAGAATCCTGTTTGTTCTGA+TGG | + | chr3.3:78117797-78117816 | MS.gene06784:CDS | 35.0% | |
| ACCTTGGGAAATTAGAATTG+AGG | - | chr3.3:78118316-78118335 | None:intergenic | 35.0% | |
| ACTCATAAAAGAGCTTCTTC+AGG | + | chr3.3:78117739-78117758 | MS.gene06784:CDS | 35.0% | |
| AGAATCCTGTTTGTTCTGAT+GGG | + | chr3.3:78117798-78117817 | MS.gene06784:CDS | 35.0% | |
| CACATGTTATTAGCTCAGAA+AGG | + | chr3.3:78119378-78119397 | MS.gene06784:CDS | 35.0% | |
| CAGAATCATGTGAATCATTC+AGG | + | chr3.3:78117923-78117942 | MS.gene06784:CDS | 35.0% | |
| CTCATAAAAGAGCTTCTTCA+GGG | + | chr3.3:78117740-78117759 | MS.gene06784:CDS | 35.0% | |
| GAATTCTAATCCTCACTCAA+AGG | + | chr3.3:78119325-78119344 | MS.gene06784:CDS | 35.0% | |
| TATGGTTAGGTTCACTTGTA+CGG | + | chr3.3:78118679-78118698 | MS.gene06784:intron | 35.0% | |
| TCCTCAATTCTAATTTCCCA+AGG | + | chr3.3:78118312-78118331 | MS.gene06784:CDS | 35.0% | |
| ! | ATGTGAATCATTCAGGTTCA+GGG | + | chr3.3:78117930-78117949 | MS.gene06784:CDS | 35.0% |
| ! | CCTTGTTGTAATGAAAACGT+GGG | + | chr3.3:78118114-78118133 | MS.gene06784:intron | 35.0% |
| ! | TAAGGATTTTGAACTCTCCA+AGG | + | chr3.3:78119499-78119518 | MS.gene06784:CDS | 35.0% |
| ! | TAATTTGCAGGAGTTACTTC+AGG | + | chr3.3:78119129-78119148 | MS.gene06784:intron | 35.0% |
| ! | TCCTTGTTGTAATGAAAACG+TGG | + | chr3.3:78118113-78118132 | MS.gene06784:intron | 35.0% |
| !!! | AAGATTTTGAGATTCAGTGC+AGG | - | chr3.3:78119537-78119556 | None:intergenic | 35.0% |
| !!! | ACTATTTTTGTACGGACACA+AGG | + | chr3.3:78118074-78118093 | MS.gene06784:intron | 35.0% |
| ACTCATTCCTGGAGAAAGTA+CGG | + | chr3.3:78118278-78118297 | MS.gene06784:CDS | 40.0% | |
| AGACCATTTGTGGAGTTTGT+AGG | - | chr3.3:78119268-78119287 | None:intergenic | 40.0% | |
| AGTAGTATTGTCGTCGTTGT+TGG | - | chr3.3:78119426-78119445 | None:intergenic | 40.0% | |
| GAAGAGGTTCCTACAAAAGA+AGG | + | chr3.3:78118050-78118069 | MS.gene06784:CDS | 40.0% | |
| GACCATTTGTGGAGTTTGTA+GGG | - | chr3.3:78119267-78119286 | None:intergenic | 40.0% | |
| GCAGGAATACACAATATCCT+TGG | - | chr3.3:78119519-78119538 | None:intergenic | 40.0% | |
| GTAGTATTGTCGTCGTTGTT+GGG | - | chr3.3:78119425-78119444 | None:intergenic | 40.0% | |
| GTCTCCTTCTGTTAAGGAAT+TGG | + | chr3.3:78117820-78117839 | MS.gene06784:CDS | 40.0% | |
| TCAGAGAATGAGACCATTTG+TGG | - | chr3.3:78119278-78119297 | None:intergenic | 40.0% | |
| TCCTTCTGTTAAGGAATTGG+TGG | + | chr3.3:78117823-78117842 | MS.gene06784:CDS | 40.0% | |
| TTCTAATCCTCACTCAAAGG+AGG | + | chr3.3:78119328-78119347 | MS.gene06784:CDS | 40.0% | |
| TTGTCAGTAACATCACTCCT+CGG | - | chr3.3:78119449-78119468 | None:intergenic | 40.0% | |
| ! | CATGTGAATCATTCAGGTTC+AGG | + | chr3.3:78117929-78117948 | MS.gene06784:CDS | 40.0% |
| ! | CCCACGTTTTCATTACAACA+AGG | - | chr3.3:78118117-78118136 | None:intergenic | 40.0% |
| ! | TGTGAATCATTCAGGTTCAG+GGG | + | chr3.3:78117931-78117950 | MS.gene06784:CDS | 40.0% |
| !! | ATAGCGGATGTTTGGTTATG+CGG | - | chr3.3:78118788-78118807 | None:intergenic | 40.0% |
| AAACACTATACCAGCTAGCG+CGG | - | chr3.3:78119064-78119083 | None:intergenic | 45.0% | |
| AGGTTGCAAAGCAACCAAAC+AGG | + | chr3.3:78119172-78119191 | MS.gene06784:CDS | 45.0% | |
| CACCCTACAAACTCCACAAA+TGG | + | chr3.3:78119262-78119281 | MS.gene06784:CDS | 45.0% | |
| CATTTGTGGAGTTTGTAGGG+TGG | - | chr3.3:78119264-78119283 | None:intergenic | 45.0% | |
| CCAACTACAAAGGATCGAAG+AGG | + | chr3.3:78118034-78118053 | MS.gene06784:CDS | 45.0% | |
| CCTCTTCGATCCTTTGTAGT+TGG | - | chr3.3:78118037-78118056 | None:intergenic | 45.0% | |
| GAGATTGTCGCCAACTACAA+AGG | + | chr3.3:78118024-78118043 | MS.gene06784:CDS | 45.0% | |
| GCAGGAAAACAGATGAGACA+AGG | + | chr3.3:78118228-78118247 | MS.gene06784:intron | 45.0% | |
| GCCACCAATTCCTTAACAGA+AGG | - | chr3.3:78117827-78117846 | None:intergenic | 45.0% | |
| TTCAGGGGAACATGGTTCAT+TGG | + | chr3.3:78117946-78117965 | MS.gene06784:CDS | 45.0% | |
| TTGTTGGCAGTGACAGTTTC+AGG | - | chr3.3:78117710-78117729 | None:intergenic | 45.0% | |
| ! | CAATTGGTGACACTCATTCC+TGG | + | chr3.3:78118267-78118286 | MS.gene06784:CDS | 45.0% |
| ! | GTTTGGTTGCTTTGCAACCT+TGG | - | chr3.3:78119172-78119191 | None:intergenic | 45.0% |
| ! | TAGCGGATGTTTGGTTATGC+GGG | - | chr3.3:78118787-78118806 | None:intergenic | 45.0% |
| ! | TGATGGGTCTCCTTCTGTTA+AGG | + | chr3.3:78117814-78117833 | MS.gene06784:CDS | 45.0% |
| !! | ACATGCACATAGCGGATGTT+TGG | - | chr3.3:78118796-78118815 | None:intergenic | 45.0% |
| !!! | TAGTAAAAAATATTTTTTAA+CGG | + | chr3.3:78118474-78118493 | MS.gene06784:intron | 5.0% |
| AACACTATACCAGCTAGCGC+GGG | - | chr3.3:78119063-78119082 | None:intergenic | 50.0% | |
| ACAAATTAACCCGCGCTAGC+TGG | + | chr3.3:78119051-78119070 | MS.gene06784:intron | 50.0% | |
| ACGACGACAATACTACTCCG+AGG | + | chr3.3:78119429-78119448 | MS.gene06784:CDS | 50.0% | |
| AGGGGAACATGGTTCATTGG+TGG | + | chr3.3:78117949-78117968 | MS.gene06784:CDS | 50.0% | |
| CTTCTGACCGTACTTTCTCC+AGG | - | chr3.3:78118288-78118307 | None:intergenic | 50.0% | |
| GGAGACCCATCAGAACAAAC+AGG | - | chr3.3:78117806-78117825 | None:intergenic | 50.0% | |
| GTCAGAACCTCCTTTGAGTG+AGG | - | chr3.3:78119338-78119357 | None:intergenic | 50.0% | |
| TGCAACCTTGGTCATGCTTC+CGG | - | chr3.3:78119160-78119179 | None:intergenic | 50.0% | |
| ! | CATTCAGGTTCAGGGGAACA+TGG | + | chr3.3:78117938-78117957 | MS.gene06784:CDS | 50.0% |
| ! | CTGGAGAAAGTACGGTCAGA+AGG | + | chr3.3:78118286-78118305 | MS.gene06784:CDS | 50.0% |
| GCAACCTTGGTCATGCTTCC+GGG | - | chr3.3:78119159-78119178 | None:intergenic | 55.0% | |
| GGAGTTACTTCAGGTGCACC+CGG | + | chr3.3:78119138-78119157 | MS.gene06784:intron | 55.0% | |
| ! | TGCACCCGGAAGCATGACCA+AGG | + | chr3.3:78119152-78119171 | MS.gene06784:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 78117692 | 78119631 | 78117692 | ID=MS.gene06784 |
| chr3.3 | mRNA | 78117692 | 78119631 | 78117692 | ID=MS.gene06784.t1;Parent=MS.gene06784 |
| chr3.3 | exon | 78117692 | 78118071 | 78117692 | ID=MS.gene06784.t1.exon1;Parent=MS.gene06784.t1 |
| chr3.3 | CDS | 78117692 | 78118071 | 78117692 | ID=cds.MS.gene06784.t1;Parent=MS.gene06784.t1 |
| chr3.3 | exon | 78118232 | 78118333 | 78118232 | ID=MS.gene06784.t1.exon2;Parent=MS.gene06784.t1 |
| chr3.3 | CDS | 78118232 | 78118333 | 78118232 | ID=cds.MS.gene06784.t1;Parent=MS.gene06784.t1 |
| chr3.3 | exon | 78119139 | 78119631 | 78119139 | ID=MS.gene06784.t1.exon3;Parent=MS.gene06784.t1 |
| chr3.3 | CDS | 78119139 | 78119631 | 78119139 | ID=cds.MS.gene06784.t1;Parent=MS.gene06784.t1 |
| Gene Sequence |
| Protein sequence |
