Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068039.t1 | XP_003608416.1 | 97.2 | 389 | 11 | 0 | 1 | 389 | 1 | 389 | 9.30E-216 | 759.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068039.t1 | G7JV65 | 97.2 | 389 | 11 | 0 | 1 | 389 | 1 | 389 | 6.7e-216 | 759.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051003 | MS.gene068039 | 0.806256 | 8.98E-50 | -1.69E-46 |
| MS.gene051343 | MS.gene068039 | 0.83729 | 5.67E-57 | -1.69E-46 |
| MS.gene05188 | MS.gene068039 | 0.805833 | 1.10E-49 | -1.69E-46 |
| MS.gene051902 | MS.gene068039 | 0.801978 | 6.98E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene068039 | 0.830164 | 3.43E-55 | -1.69E-46 |
| MS.gene053058 | MS.gene068039 | 0.84026 | 9.68E-58 | -1.69E-46 |
| MS.gene053564 | MS.gene068039 | 0.964665 | 1.29E-123 | -1.69E-46 |
| MS.gene05469 | MS.gene068039 | 0.831917 | 1.27E-55 | -1.69E-46 |
| MS.gene056986 | MS.gene068039 | 0.827699 | 1.35E-54 | -1.69E-46 |
| MS.gene059146 | MS.gene068039 | 0.820625 | 6.21E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068039.t1 | MTR_4g093860 | 97.172 | 389 | 11 | 0 | 1 | 389 | 1 | 389 | 0.0 | 778 |
| MS.gene068039.t1 | MTR_5g065970 | 39.440 | 393 | 210 | 9 | 18 | 389 | 34 | 419 | 1.47e-84 | 263 |
| MS.gene068039.t1 | MTR_3g100550 | 42.500 | 360 | 176 | 12 | 55 | 389 | 66 | 419 | 6.63e-81 | 254 |
| MS.gene068039.t1 | MTR_7g070530 | 39.560 | 91 | 46 | 3 | 307 | 388 | 419 | 509 | 2.14e-14 | 75.1 |
| MS.gene068039.t1 | MTR_4g013290 | 40.659 | 91 | 45 | 3 | 307 | 388 | 419 | 509 | 2.81e-13 | 71.6 |
| MS.gene068039.t1 | MTR_3g031200 | 40.000 | 90 | 45 | 3 | 307 | 387 | 404 | 493 | 4.53e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068039.t1 | AT1G58120 | 39.286 | 392 | 216 | 12 | 15 | 389 | 34 | 420 | 3.56e-75 | 239 |
| MS.gene068039.t1 | AT5G01710 | 40.000 | 105 | 54 | 3 | 293 | 388 | 409 | 513 | 3.16e-16 | 80.5 |
Find 85 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAAAGGGTTAGTTGTTTC+TGG | 0.144284 | 4.3:+20749650 | MS.gene068039:CDS |
| TGATGCTTTCTTGGTGATTA+AGG | 0.204279 | 4.3:+20749541 | MS.gene068039:CDS |
| GAATTCCATTCTTCATGATT+TGG | 0.206669 | 4.3:+20749736 | MS.gene068039:CDS |
| TTTAACTTCTGATGCTTTCT+TGG | 0.223021 | 4.3:+20749532 | MS.gene068039:CDS |
| AATTGGTGTCGAAAATAATT+TGG | 0.243328 | 4.3:+20750069 | MS.gene068039:CDS |
| TTTGTTGCATTTCCTTTCTT+GGG | 0.254174 | 4.3:+20749620 | MS.gene068039:CDS |
| CTTCAAGTTCTTGTTTGATT+TGG | 0.260233 | 4.3:-20750200 | None:intergenic |
| ATTATAAAGTTGTGTATCTT+AGG | 0.286056 | 4.3:+20750014 | MS.gene068039:CDS |
| AATTCCATTCTTCATGATTT+GGG | 0.298195 | 4.3:+20749737 | MS.gene068039:CDS |
| GTGGTGATTCTTTGTTGAAT+TGG | 0.325383 | 4.3:+20749825 | MS.gene068039:CDS |
| TGACGAGGGTCTTCTTAAAA+AGG | 0.359175 | 4.3:+20749760 | MS.gene068039:CDS |
| TTTGTTGCATTGAGGAAAAT+TGG | 0.362227 | 4.3:+20750052 | MS.gene068039:CDS |
| GGCCAAGACAACGGCTTTAG+AGG | 0.386015 | 4.3:+20750135 | MS.gene068039:CDS |
| AAGCTTTGAAGATGCTGTTT+CGG | 0.394317 | 4.3:+20749904 | MS.gene068039:CDS |
| ATTCAAAACCTCAACATTGA+TGG | 0.414454 | 4.3:-20749717 | None:intergenic |
| AACAATCAATGGTGGCAGAC+TGG | 0.418492 | 4.3:+20750547 | MS.gene068039:CDS |
| TTGTTGGGTGATTCTCTAGA+TGG | 0.422706 | 4.3:+20750241 | MS.gene068039:CDS |
| ACATCAGTTTGAGGCACATT+CGG | 0.423831 | 4.3:-20750397 | None:intergenic |
| AGAAGAGTGGTAGAGCATAT+TGG | 0.436715 | 4.3:+20750578 | MS.gene068039:CDS |
| CAAGTACCTGCCTGAGTTGT+TGG | 0.444307 | 4.3:+20750225 | MS.gene068039:CDS |
| CATTTGCAAGGTGGTAGGAT+TGG | 0.444924 | 4.3:+20749509 | MS.gene068039:CDS |
| CGAAGAGTCTTCGTTGGTGT+GGG | 0.451764 | 4.3:+20750271 | MS.gene068039:CDS |
| CTCAAACTGATGTTTCTGCT+TGG | 0.460111 | 4.3:+20750407 | MS.gene068039:CDS |
| GTACGGAAGGCTGAGGGATG+AGG | 0.465671 | 4.3:+20750615 | MS.gene068039:CDS |
| GCCACCATTGATTGTTACAT+TGG | 0.467687 | 4.3:-20750540 | None:intergenic |
| CTTGATGACTCGTCAAATGC+TGG | 0.469028 | 4.3:+20749974 | MS.gene068039:CDS |
| AAAACAAAGCAGCAGTTGAA+TGG | 0.478232 | 4.3:+20750305 | MS.gene068039:CDS |
| TCCTCCAATGTAACAATCAA+TGG | 0.481653 | 4.3:+20750536 | MS.gene068039:CDS |
| GAAACAGCATCTTCAAAGCT+TGG | 0.484089 | 4.3:-20749902 | None:intergenic |
| ATTTGAAATCCACAGTCTAC+AGG | 0.484397 | 4.3:+20750360 | MS.gene068039:CDS |
| AACTGACAAAGCCTCTTCCT+TGG | 0.489534 | 4.3:-20750103 | None:intergenic |
| TAGAGCATATTGGCAGTGCT+TGG | 0.490327 | 4.3:+20750588 | MS.gene068039:CDS |
| GTCACCCAAATCATGAAGAA+TGG | 0.499476 | 4.3:-20749741 | None:intergenic |
| ACCCTCTAAAGCCGTTGTCT+TGG | 0.499635 | 4.3:-20750137 | None:intergenic |
| GATTTGGCAGAATCCTGTCT+TGG | 0.503721 | 4.3:-20750184 | None:intergenic |
| TTGGTTATCTAAGCATGTTA+AGG | 0.504184 | 4.3:+20750426 | MS.gene068039:CDS |
| GCTTCATTCAGCCCCACCAT+TGG | 0.506183 | 4.3:-20750651 | None:intergenic |
| GCTCCTTGAGCCACCAAGAC+AGG | 0.509188 | 4.3:+20750171 | MS.gene068039:CDS |
| ACCATTGATTGTTACATTGG+AGG | 0.510946 | 4.3:-20750537 | None:intergenic |
| TTGGCAGAATCCTGTCTTGG+TGG | 0.512751 | 4.3:-20750181 | None:intergenic |
| GATCGTGTTCTGAAAATTGA+TGG | 0.514696 | 4.3:+20749929 | MS.gene068039:CDS |
| ACAATCAATGGTGGCAGACT+GGG | 0.518461 | 4.3:+20750548 | MS.gene068039:CDS |
| TTGTTGCATTTCCTTTCTTG+GGG | 0.519626 | 4.3:+20749621 | MS.gene068039:CDS |
| GCGAAGAGTCTTCGTTGGTG+TGG | 0.523094 | 4.3:+20750270 | MS.gene068039:CDS |
| TGGATTTGTACGGAAGGCTG+AGG | 0.526442 | 4.3:+20750608 | MS.gene068039:CDS |
| TGGCAGTGCTTGGATTTGTA+CGG | 0.526994 | 4.3:+20750598 | MS.gene068039:CDS |
| AAGTACCTGCCTGAGTTGTT+GGG | 0.534976 | 4.3:+20750226 | MS.gene068039:CDS |
| AATCCTGTCTTGGTGGCTCA+AGG | 0.535431 | 4.3:-20750174 | None:intergenic |
| CAGCATTTGACGAGTCATCA+AGG | 0.542449 | 4.3:-20749973 | None:intergenic |
| GCTTTGTCAGTTTGCAACAG+TGG | 0.548747 | 4.3:+20750114 | MS.gene068039:CDS |
| TAGATTCTACACCAAGGAAG+AGG | 0.551394 | 4.3:+20750092 | MS.gene068039:CDS |
| TCTTCATGATTTGGGTGACG+AGG | 0.554220 | 4.3:+20749745 | MS.gene068039:CDS |
| TACGGAAGGCTGAGGGATGA+GGG | 0.560015 | 4.3:+20750616 | MS.gene068039:CDS |
| CTTCATGATTTGGGTGACGA+GGG | 0.561941 | 4.3:+20749746 | MS.gene068039:CDS |
| CGTTGGTGTGGGTTTGCGTG+AGG | 0.572549 | 4.3:+20750282 | MS.gene068039:CDS |
| GACGAGTCATCAAGGCTCAA+AGG | 0.580516 | 4.3:-20749965 | None:intergenic |
| CAAGCAGAAACATCAGTTTG+AGG | 0.582495 | 4.3:-20750406 | None:intergenic |
| CACCTTCAAAACCACGCGGA+GGG | 0.589519 | 4.3:-20749805 | None:intergenic |
| GCCAAGACAACGGCTTTAGA+GGG | 0.591248 | 4.3:+20750136 | MS.gene068039:CDS |
| AGATGAGTATGTTGTAATGA+AGG | 0.592810 | 4.3:+20750450 | MS.gene068039:CDS |
| TGTTGCAGTACACCAATGGT+GGG | 0.594966 | 4.3:+20750639 | MS.gene068039:CDS |
| TGCAACAGTGGCCAAGACAA+CGG | 0.597894 | 4.3:+20750126 | MS.gene068039:CDS |
| GTGTTGCAGTACACCAATGG+TGG | 0.598226 | 4.3:+20750638 | MS.gene068039:CDS |
| GTTGCAGTACACCAATGGTG+GGG | 0.598346 | 4.3:+20750640 | MS.gene068039:CDS |
| TACAAGCGAAGAGTCTTCGT+TGG | 0.599758 | 4.3:+20750265 | MS.gene068039:CDS |
| TTTGTTGAATTGGAATAGTG+AGG | 0.599995 | 4.3:+20749835 | MS.gene068039:CDS |
| AGAGAATCACCCAACAACTC+AGG | 0.603348 | 4.3:-20750235 | None:intergenic |
| GGCTGAAGCAGATGTGGTGG+AGG | 0.604366 | 4.3:+20750471 | MS.gene068039:CDS |
| AGCAACATTTGCAAGGTGGT+AGG | 0.606119 | 4.3:+20749504 | MS.gene068039:CDS |
| AATCACCCAACAACTCAGGC+AGG | 0.612589 | 4.3:-20750231 | None:intergenic |
| GGATTTGTACGGAAGGCTGA+GGG | 0.619736 | 4.3:+20750609 | MS.gene068039:CDS |
| ATGGGTAAGCAACATTTGCA+AGG | 0.638111 | 4.3:+20749497 | MS.gene068039:CDS |
| GAAGGCTGAAGCAGATGTGG+TGG | 0.660257 | 4.3:+20750468 | MS.gene068039:CDS |
| AGTGCTTGGATTTGTACGGA+AGG | 0.663285 | 4.3:+20750602 | MS.gene068039:CDS |
| TCCAATGTAACAATCAATGG+TGG | 0.663863 | 4.3:+20750539 | MS.gene068039:CDS |
| AATGAAGGCTGAAGCAGATG+TGG | 0.670238 | 4.3:+20750465 | MS.gene068039:CDS |
| ACTGGGAAGAGAAAGAAGAG+TGG | 0.677348 | 4.3:+20750565 | MS.gene068039:CDS |
| CCACCTTCAAAACCACGCGG+AGG | 0.677475 | 4.3:-20749806 | None:intergenic |
| CTGATGCTACCTGTAGACTG+TGG | 0.694730 | 4.3:-20750369 | None:intergenic |
| GGTAAGCAACATTTGCAAGG+TGG | 0.702805 | 4.3:+20749500 | MS.gene068039:CDS |
| CTTATTATGAGCCCTCCGCG+TGG | 0.705399 | 4.3:+20749794 | MS.gene068039:CDS |
| AGGGTGTTGCAGTACACCAA+TGG | 0.705824 | 4.3:+20750635 | MS.gene068039:CDS |
| ATTTGGTAGATTCTACACCA+AGG | 0.711338 | 4.3:+20750086 | MS.gene068039:CDS |
| ATGTGGTGGAGGAAATGATG+CGG | 0.729824 | 4.3:+20750482 | MS.gene068039:CDS |
| TCACCACCTTCAAAACCACG+CGG | 0.825666 | 4.3:-20749809 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAAAGTTGTGTATCTT+AGG | + | chr4.3:20750014-20750033 | MS.gene068039:CDS | 20.0% |
| ! | AATTCCATTCTTCATGATTT+GGG | + | chr4.3:20749737-20749756 | MS.gene068039:CDS | 25.0% |
| !! | CAAATTTTGTACTCTTCTTT+GGG | - | chr4.3:20750345-20750364 | None:intergenic | 25.0% |
| !! | TCAAATTTTGTACTCTTCTT+TGG | - | chr4.3:20750346-20750365 | None:intergenic | 25.0% |
| !!! | AACAACTAACCCTTTTAAAA+AGG | - | chr4.3:20749648-20749667 | None:intergenic | 25.0% |
| !!! | AATTGGTGTCGAAAATAATT+TGG | + | chr4.3:20750069-20750088 | MS.gene068039:CDS | 25.0% |
| !!! | ATTCTATTTTTGTTGCATTG+AGG | + | chr4.3:20750044-20750063 | MS.gene068039:CDS | 25.0% |
| AGATGAGTATGTTGTAATGA+AGG | + | chr4.3:20750450-20750469 | MS.gene068039:CDS | 30.0% | |
| ATTCAAAACCTCAACATTGA+TGG | - | chr4.3:20749720-20749739 | None:intergenic | 30.0% | |
| GAATTCCATTCTTCATGATT+TGG | + | chr4.3:20749736-20749755 | MS.gene068039:CDS | 30.0% | |
| TCTTCTTAAAAAGGAGGATA+AGG | + | chr4.3:20749769-20749788 | MS.gene068039:CDS | 30.0% | |
| TTGGTTATCTAAGCATGTTA+AGG | + | chr4.3:20750426-20750445 | MS.gene068039:CDS | 30.0% | |
| TTTGTTGAATTGGAATAGTG+AGG | + | chr4.3:20749835-20749854 | MS.gene068039:CDS | 30.0% | |
| TTTGTTGCATTGAGGAAAAT+TGG | + | chr4.3:20750052-20750071 | MS.gene068039:CDS | 30.0% | |
| TTTGTTGCATTTCCTTTCTT+GGG | + | chr4.3:20749620-20749639 | MS.gene068039:CDS | 30.0% | |
| ! | CTTCAAGTTCTTGTTTGATT+TGG | - | chr4.3:20750203-20750222 | None:intergenic | 30.0% |
| ! | TTTAACTTCTGATGCTTTCT+TGG | + | chr4.3:20749532-20749551 | MS.gene068039:CDS | 30.0% |
| ! | TTTTGTTGCATTTCCTTTCT+TGG | + | chr4.3:20749619-20749638 | MS.gene068039:CDS | 30.0% |
| !! | TTAAAAGGGTTAGTTGTTTC+TGG | + | chr4.3:20749650-20749669 | MS.gene068039:CDS | 30.0% |
| !! | TTTTGTTTCCATCAATGTTG+AGG | + | chr4.3:20749709-20749728 | MS.gene068039:CDS | 30.0% |
| AAAACAAAGCAGCAGTTGAA+TGG | + | chr4.3:20750305-20750324 | MS.gene068039:CDS | 35.0% | |
| ACACGTAAAAAACGTGTATC+AGG | - | chr4.3:20749569-20749588 | None:intergenic | 35.0% | |
| ATTTGGTAGATTCTACACCA+AGG | + | chr4.3:20750086-20750105 | MS.gene068039:CDS | 35.0% | |
| GTGGTGATTCTTTGTTGAAT+TGG | + | chr4.3:20749825-20749844 | MS.gene068039:CDS | 35.0% | |
| TCCAATGTAACAATCAATGG+TGG | + | chr4.3:20750539-20750558 | MS.gene068039:CDS | 35.0% | |
| TCCTCCAATGTAACAATCAA+TGG | + | chr4.3:20750536-20750555 | MS.gene068039:CDS | 35.0% | |
| TTGTTGCATTTCCTTTCTTG+GGG | + | chr4.3:20749621-20749640 | MS.gene068039:CDS | 35.0% | |
| TTTAAAAAGGACCCCAAGAA+AGG | - | chr4.3:20749635-20749654 | None:intergenic | 35.0% | |
| ! | ACCATTGATTGTTACATTGG+AGG | - | chr4.3:20750540-20750559 | None:intergenic | 35.0% |
| ! | ATTTGAAATCCACAGTCTAC+AGG | + | chr4.3:20750360-20750379 | MS.gene068039:CDS | 35.0% |
| ! | TGATGCTTTCTTGGTGATTA+AGG | + | chr4.3:20749541-20749560 | MS.gene068039:CDS | 35.0% |
| ! | TTCTTGGGGTCCTTTTTAAA+AGG | + | chr4.3:20749635-20749654 | MS.gene068039:CDS | 35.0% |
| !! | AAGCTTTGAAGATGCTGTTT+CGG | + | chr4.3:20749904-20749923 | MS.gene068039:CDS | 35.0% |
| !! | GATCGTGTTCTGAAAATTGA+TGG | + | chr4.3:20749929-20749948 | MS.gene068039:CDS | 35.0% |
| !! | TCTTGGGGTCCTTTTTAAAA+GGG | + | chr4.3:20749636-20749655 | MS.gene068039:CDS | 35.0% |
| !!! | TGTGTCACGTTCTTTGTTTT+TGG | + | chr4.3:20749589-20749608 | MS.gene068039:CDS | 35.0% |
| AGAAGAGTGGTAGAGCATAT+TGG | + | chr4.3:20750578-20750597 | MS.gene068039:CDS | 40.0% | |
| ATGGGTAAGCAACATTTGCA+AGG | + | chr4.3:20749497-20749516 | MS.gene068039:CDS | 40.0% | |
| CAAGCAGAAACATCAGTTTG+AGG | - | chr4.3:20750409-20750428 | None:intergenic | 40.0% | |
| GAAACAGCATCTTCAAAGCT+TGG | - | chr4.3:20749905-20749924 | None:intergenic | 40.0% | |
| GTCACCCAAATCATGAAGAA+TGG | - | chr4.3:20749744-20749763 | None:intergenic | 40.0% | |
| TAGATTCTACACCAAGGAAG+AGG | + | chr4.3:20750092-20750111 | MS.gene068039:CDS | 40.0% | |
| TGACGAGGGTCTTCTTAAAA+AGG | + | chr4.3:20749760-20749779 | MS.gene068039:CDS | 40.0% | |
| TTGTTGGGTGATTCTCTAGA+TGG | + | chr4.3:20750241-20750260 | MS.gene068039:CDS | 40.0% | |
| ! | ACATCAGTTTGAGGCACATT+CGG | - | chr4.3:20750400-20750419 | None:intergenic | 40.0% |
| ! | CTCAAACTGATGTTTCTGCT+TGG | + | chr4.3:20750407-20750426 | MS.gene068039:CDS | 40.0% |
| ! | GCCACCATTGATTGTTACAT+TGG | - | chr4.3:20750543-20750562 | None:intergenic | 40.0% |
| AACAATCAATGGTGGCAGAC+TGG | + | chr4.3:20750547-20750566 | MS.gene068039:CDS | 45.0% | |
| AACTGACAAAGCCTCTTCCT+TGG | - | chr4.3:20750106-20750125 | None:intergenic | 45.0% | |
| AAGTACCTGCCTGAGTTGTT+GGG | + | chr4.3:20750226-20750245 | MS.gene068039:CDS | 45.0% | |
| AATGAAGGCTGAAGCAGATG+TGG | + | chr4.3:20750465-20750484 | MS.gene068039:CDS | 45.0% | |
| ACAATCAATGGTGGCAGACT+GGG | + | chr4.3:20750548-20750567 | MS.gene068039:CDS | 45.0% | |
| ACTGGGAAGAGAAAGAAGAG+TGG | + | chr4.3:20750565-20750584 | MS.gene068039:CDS | 45.0% | |
| AGAGAATCACCCAACAACTC+AGG | - | chr4.3:20750238-20750257 | None:intergenic | 45.0% | |
| AGCAACATTTGCAAGGTGGT+AGG | + | chr4.3:20749504-20749523 | MS.gene068039:CDS | 45.0% | |
| AGTGCTTGGATTTGTACGGA+AGG | + | chr4.3:20750602-20750621 | MS.gene068039:CDS | 45.0% | |
| CAGCATTTGACGAGTCATCA+AGG | - | chr4.3:20749976-20749995 | None:intergenic | 45.0% | |
| CATTTGCAAGGTGGTAGGAT+TGG | + | chr4.3:20749509-20749528 | MS.gene068039:CDS | 45.0% | |
| CGAGGGTCTTCTTAAAAAGG+AGG | + | chr4.3:20749763-20749782 | MS.gene068039:CDS | 45.0% | |
| GATTTGGCAGAATCCTGTCT+TGG | - | chr4.3:20750187-20750206 | None:intergenic | 45.0% | |
| GCTTTGTCAGTTTGCAACAG+TGG | + | chr4.3:20750114-20750133 | MS.gene068039:CDS | 45.0% | |
| GGTAAGCAACATTTGCAAGG+TGG | + | chr4.3:20749500-20749519 | MS.gene068039:CDS | 45.0% | |
| TACAAGCGAAGAGTCTTCGT+TGG | + | chr4.3:20750265-20750284 | MS.gene068039:CDS | 45.0% | |
| TAGAGCATATTGGCAGTGCT+TGG | + | chr4.3:20750588-20750607 | MS.gene068039:CDS | 45.0% | |
| TGGCAGTGCTTGGATTTGTA+CGG | + | chr4.3:20750598-20750617 | MS.gene068039:CDS | 45.0% | |
| TGTTGCAGTACACCAATGGT+GGG | + | chr4.3:20750639-20750658 | MS.gene068039:CDS | 45.0% | |
| ! | ATGTGGTGGAGGAAATGATG+CGG | + | chr4.3:20750482-20750501 | MS.gene068039:CDS | 45.0% |
| ! | CTTCATGATTTGGGTGACGA+GGG | + | chr4.3:20749746-20749765 | MS.gene068039:CDS | 45.0% |
| ! | CTTGATGACTCGTCAAATGC+TGG | + | chr4.3:20749974-20749993 | MS.gene068039:CDS | 45.0% |
| ! | TCTTCATGATTTGGGTGACG+AGG | + | chr4.3:20749745-20749764 | MS.gene068039:CDS | 45.0% |
| AATCACCCAACAACTCAGGC+AGG | - | chr4.3:20750234-20750253 | None:intergenic | 50.0% | |
| CAAGTACCTGCCTGAGTTGT+TGG | + | chr4.3:20750225-20750244 | MS.gene068039:CDS | 50.0% | |
| CGAAGAGTCTTCGTTGGTGT+GGG | + | chr4.3:20750271-20750290 | MS.gene068039:CDS | 50.0% | |
| CTGATGCTACCTGTAGACTG+TGG | - | chr4.3:20750372-20750391 | None:intergenic | 50.0% | |
| GACGAGTCATCAAGGCTCAA+AGG | - | chr4.3:20749968-20749987 | None:intergenic | 50.0% | |
| GGATTTGTACGGAAGGCTGA+GGG | + | chr4.3:20750609-20750628 | MS.gene068039:CDS | 50.0% | |
| GTGTTGCAGTACACCAATGG+TGG | + | chr4.3:20750638-20750657 | MS.gene068039:CDS | 50.0% | |
| GTTGCAGTACACCAATGGTG+GGG | + | chr4.3:20750640-20750659 | MS.gene068039:CDS | 50.0% | |
| TCACCACCTTCAAAACCACG+CGG | - | chr4.3:20749812-20749831 | None:intergenic | 50.0% | |
| TGCAACAGTGGCCAAGACAA+CGG | + | chr4.3:20750126-20750145 | MS.gene068039:CDS | 50.0% | |
| TGGATTTGTACGGAAGGCTG+AGG | + | chr4.3:20750608-20750627 | MS.gene068039:CDS | 50.0% | |
| TTGGCAGAATCCTGTCTTGG+TGG | - | chr4.3:20750184-20750203 | None:intergenic | 50.0% | |
| ! | AATCCTGTCTTGGTGGCTCA+AGG | - | chr4.3:20750177-20750196 | None:intergenic | 50.0% |
| !! | ACCCTCTAAAGCCGTTGTCT+TGG | - | chr4.3:20750140-20750159 | None:intergenic | 50.0% |
| !! | AGGGTGTTGCAGTACACCAA+TGG | + | chr4.3:20750635-20750654 | MS.gene068039:CDS | 50.0% |
| !! | GCCAAGACAACGGCTTTAGA+GGG | + | chr4.3:20750136-20750155 | MS.gene068039:CDS | 50.0% |
| CACCTTCAAAACCACGCGGA+GGG | - | chr4.3:20749808-20749827 | None:intergenic | 55.0% | |
| CTTATTATGAGCCCTCCGCG+TGG | + | chr4.3:20749794-20749813 | MS.gene068039:CDS | 55.0% | |
| GAAGGCTGAAGCAGATGTGG+TGG | + | chr4.3:20750468-20750487 | MS.gene068039:CDS | 55.0% | |
| GCGAAGAGTCTTCGTTGGTG+TGG | + | chr4.3:20750270-20750289 | MS.gene068039:CDS | 55.0% | |
| TACGGAAGGCTGAGGGATGA+GGG | + | chr4.3:20750616-20750635 | MS.gene068039:CDS | 55.0% | |
| ! | GGCCAAGACAACGGCTTTAG+AGG | + | chr4.3:20750135-20750154 | MS.gene068039:CDS | 55.0% |
| CCACCTTCAAAACCACGCGG+AGG | - | chr4.3:20749809-20749828 | None:intergenic | 60.0% | |
| CGTTGGTGTGGGTTTGCGTG+AGG | + | chr4.3:20750282-20750301 | MS.gene068039:CDS | 60.0% | |
| GCTCCTTGAGCCACCAAGAC+AGG | + | chr4.3:20750171-20750190 | MS.gene068039:CDS | 60.0% | |
| GGCTGAAGCAGATGTGGTGG+AGG | + | chr4.3:20750471-20750490 | MS.gene068039:CDS | 60.0% | |
| GTACGGAAGGCTGAGGGATG+AGG | + | chr4.3:20750615-20750634 | MS.gene068039:CDS | 60.0% | |
| !!! | AGCCCTCCGCGTGGTTTTGA+AGG | + | chr4.3:20749803-20749822 | MS.gene068039:CDS | 60.0% |
| !!! | CCTCCGCGTGGTTTTGAAGG+TGG | + | chr4.3:20749806-20749825 | MS.gene068039:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 20749497 | 20750666 | 20749497 | ID=MS.gene068039 |
| chr4.3 | mRNA | 20749497 | 20750666 | 20749497 | ID=MS.gene068039.t1;Parent=MS.gene068039 |
| chr4.3 | exon | 20749497 | 20750666 | 20749497 | ID=MS.gene068039.t1.exon1;Parent=MS.gene068039.t1 |
| chr4.3 | CDS | 20749497 | 20750666 | 20749497 | ID=cds.MS.gene068039.t1;Parent=MS.gene068039.t1 |
| Gene Sequence |
| Protein sequence |
