Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068093.t1 | XP_003624883.1 | 100 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 2.70E-73 | 285 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068093.t1 | Q9M612 | 81.4 | 199 | 30 | 3 | 6 | 202 | 11 | 204 | 6.5e-52 | 205.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068093.t1 | G7L4T7 | 100.0 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 1.9e-73 | 285.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene068093 | MS.gene50742 | PPI |
| MS.gene23317 | MS.gene068093 | PPI |
| MS.gene003685 | MS.gene068093 | PPI |
| MS.gene068093 | MS.gene039827 | PPI |
| MS.gene068093 | MS.gene003688 | PPI |
| MS.gene068093 | MS.gene73089 | PPI |
| MS.gene044693 | MS.gene068093 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068093.t1 | MTR_7g088680 | 100.000 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 1.72e-146 | 405 |
| MS.gene068093.t1 | MTR_3g092970 | 72.185 | 151 | 36 | 2 | 59 | 203 | 77 | 227 | 1.54e-67 | 206 |
| MS.gene068093.t1 | MTR_3g092980 | 69.333 | 150 | 41 | 2 | 59 | 203 | 69 | 218 | 8.66e-59 | 184 |
| MS.gene068093.t1 | MTR_3g092980 | 69.333 | 150 | 41 | 2 | 59 | 203 | 71 | 220 | 1.02e-58 | 184 |
| MS.gene068093.t1 | MTR_3g093750 | 56.303 | 119 | 41 | 3 | 87 | 203 | 418 | 527 | 1.26e-29 | 114 |
| MS.gene068093.t1 | MTR_1g006975 | 88.636 | 44 | 5 | 0 | 51 | 94 | 1898 | 1941 | 1.15e-16 | 78.2 |
| MS.gene068093.t1 | MTR_3g093720 | 78.571 | 42 | 9 | 0 | 161 | 202 | 215 | 256 | 5.37e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068093.t1 | AT3G12390 | 72.500 | 200 | 52 | 2 | 6 | 203 | 5 | 203 | 1.98e-77 | 231 |
| MS.gene068093.t1 | AT5G13850 | 70.000 | 210 | 50 | 3 | 1 | 203 | 1 | 204 | 1.07e-75 | 226 |
| MS.gene068093.t1 | AT3G49470 | 62.000 | 200 | 64 | 4 | 10 | 203 | 24 | 217 | 2.44e-67 | 206 |
| MS.gene068093.t1 | AT3G49470 | 61.622 | 185 | 60 | 3 | 16 | 194 | 29 | 208 | 1.31e-61 | 192 |
| MS.gene068093.t1 | AT4G10480 | 61.951 | 205 | 65 | 3 | 6 | 202 | 11 | 210 | 3.67e-61 | 190 |
| MS.gene068093.t1 | AT4G10480 | 69.737 | 152 | 36 | 2 | 59 | 202 | 62 | 211 | 6.97e-61 | 189 |
| MS.gene068093.t1 | AT1G33040 | 64.238 | 151 | 48 | 2 | 59 | 203 | 59 | 209 | 6.37e-59 | 184 |
Find 46 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGACACCTACATCATATT+TGG | 0.140657 | 7.3:+20783139 | MS.gene068093:CDS |
| CAAGAAGCTCTTCTTGGGTT+TGG | 0.250426 | 7.3:-20781336 | None:intergenic |
| CTGACACCTACATCATATTT+GGG | 0.293613 | 7.3:+20783140 | MS.gene068093:CDS |
| GCACCCGCATTGGTCAAATT+AGG | 0.316419 | 7.3:-20783226 | None:intergenic |
| TCGTCTACATCCTCATCTTC+TGG | 0.324398 | 7.3:-20783274 | None:intergenic |
| GAGCAGCAAGAAGCTCTTCT+TGG | 0.330866 | 7.3:-20781342 | None:intergenic |
| AAGAAGCTCTTCTTGGGTTT+GGG | 0.331123 | 7.3:-20781335 | None:intergenic |
| AGACATTGTTGCTGCCATTA+TGG | 0.359211 | 7.3:+20783390 | MS.gene068093:CDS |
| CTCGGAATGAAAGCTGTTAC+TGG | 0.360803 | 7.3:+20782939 | MS.gene068093:CDS |
| GCTTTAACAGCTCTTGATCT+TGG | 0.362012 | 7.3:-20783349 | None:intergenic |
| GTTGGACTCTTGAAAACATC+TGG | 0.370830 | 7.3:-20783115 | None:intergenic |
| TTCTTGGGTTTGGGCAGTCA+TGG | 0.386669 | 7.3:-20781326 | None:intergenic |
| GGAGCAATACCAGAGGATTC+CGG | 0.409321 | 7.3:-20783253 | None:intergenic |
| TTAATTTGTTAGCTCCATAA+TGG | 0.425574 | 7.3:-20783404 | None:intergenic |
| CACCACCAACTCAATATCCT+TGG | 0.437037 | 7.3:-20783311 | None:intergenic |
| AGCAGCAAGAAGCTCTTCTT+GGG | 0.446621 | 7.3:-20781341 | None:intergenic |
| GACCAATGCGGGTGCAAAGC+CGG | 0.454016 | 7.3:+20783234 | MS.gene068093:CDS |
| TCAGGCTGCAGAGCAGTTCA+AGG | 0.470685 | 7.3:+20783201 | MS.gene068093:CDS |
| TTCCGGCTTTGCACCCGCAT+TGG | 0.473962 | 7.3:-20783236 | None:intergenic |
| TCATCGTCATCCTCGACTAC+AGG | 0.490581 | 7.3:-20781967 | None:intergenic |
| GGTGCAAAGCCGGAATCCTC+TGG | 0.494289 | 7.3:+20783244 | MS.gene068093:CDS |
| ATGATGTAGGTGTCAGAAGT+TGG | 0.509913 | 7.3:-20783133 | None:intergenic |
| TCCCAAGGATATTGAGTTGG+TGG | 0.515624 | 7.3:+20783309 | MS.gene068093:CDS |
| GCTCCTAATTTGACCAATGC+GGG | 0.519514 | 7.3:+20783223 | MS.gene068093:CDS |
| CGCAAGGCAATGCTTAAACT+CGG | 0.521577 | 7.3:+20782921 | MS.gene068093:CDS |
| ACCACCAACTCAATATCCTT+GGG | 0.531886 | 7.3:-20783310 | None:intergenic |
| GATGAGGATGTAGACGAGAC+TGG | 0.538671 | 7.3:+20783280 | MS.gene068093:CDS |
| GGATTTGAAGGTGATGCATC+TGG | 0.544074 | 7.3:+20782864 | MS.gene068093:intron |
| GGCAGCAACAATGTCTCCAT+TGG | 0.548006 | 7.3:-20783383 | None:intergenic |
| GAGTTGGTGGTGACTCAAGC+TGG | 0.556994 | 7.3:+20783322 | MS.gene068093:CDS |
| AAAGCTCTCAAAGCTGCCAA+TGG | 0.592851 | 7.3:+20783367 | MS.gene068093:CDS |
| GAGCTCACAGCTACAAACTC+AGG | 0.597975 | 7.3:+20783183 | MS.gene068093:CDS |
| AGCTTCCCCAAATATGATGT+AGG | 0.598188 | 7.3:-20783146 | None:intergenic |
| CGAGACTGGTGTAGATCCCA+AGG | 0.607645 | 7.3:+20783294 | MS.gene068093:CDS |
| TGGTATTGCTCCAGAAGATG+AGG | 0.607813 | 7.3:+20783264 | MS.gene068093:CDS |
| AGATCCCAAGGATATTGAGT+TGG | 0.629225 | 7.3:+20783306 | MS.gene068093:CDS |
| GCATGATGAGCCTGTAGTCG+AGG | 0.640360 | 7.3:+20781957 | MS.gene068093:intron |
| TGACGAAGATGACGATGATG+AGG | 0.642696 | 7.3:+20782005 | MS.gene068093:CDS |
| TTGAAGGTGATGCATCTGGT+AGG | 0.643359 | 7.3:+20782868 | MS.gene068093:CDS |
| GGCTCCTAATTTGACCAATG+CGG | 0.643666 | 7.3:+20783222 | MS.gene068093:CDS |
| AAGTGAAAAGAAGAGTCGCA+AGG | 0.645070 | 7.3:+20782905 | MS.gene068093:CDS |
| TGACACCTACATCATATTTG+GGG | 0.656598 | 7.3:+20783141 | MS.gene068093:CDS |
| ATCTTCTGGAGCAATACCAG+AGG | 0.670950 | 7.3:-20783260 | None:intergenic |
| AGTCGAGGATGACGATGATG+AGG | 0.675870 | 7.3:+20781972 | MS.gene068093:CDS |
| TGACGATGATGAGGACGATG+AGG | 0.719627 | 7.3:+20781981 | MS.gene068093:CDS |
| GAGGACGATGACAATGCTGA+AGG | 0.723088 | 7.3:+20782024 | MS.gene068093:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATAAATAAATAAAT+TGG | - | chr7.3:20781417-20781436 | None:intergenic | 0.0% |
| !! | AAAATAAATAAATAAATTGG+AGG | - | chr7.3:20781414-20781433 | None:intergenic | 10.0% |
| !! | ATGTTACAATGAAAAAAAAA+TGG | + | chr7.3:20781692-20781711 | MS.gene068093:intron | 15.0% |
| !! | TAAACAATAAAAAAGAATAC+CGG | - | chr7.3:20782339-20782358 | None:intergenic | 15.0% |
| !!! | AATATTTTTTTTTCTATTGC+AGG | + | chr7.3:20782843-20782862 | MS.gene068093:intron | 15.0% |
| !!! | ATTTTTTTTAGTTCAGTTTT+TGG | + | chr7.3:20781429-20781448 | MS.gene068093:intron | 15.0% |
| !!! | GATTTTATGAATAAATTGAA+AGG | + | chr7.3:20781654-20781673 | MS.gene068093:intron | 15.0% |
| !!! | TTTATGTATGAAATGTTTTA+GGG | + | chr7.3:20781511-20781530 | MS.gene068093:intron | 15.0% |
| !! | TGTTCTACAAAATTTCAAAT+GGG | + | chr7.3:20782203-20782222 | MS.gene068093:intron | 20.0% |
| !! | TTAAGTGTAATTACAAAAGT+CGG | - | chr7.3:20782623-20782642 | None:intergenic | 20.0% |
| !! | TTATTCATAAAATCATGACA+TGG | - | chr7.3:20781648-20781667 | None:intergenic | 20.0% |
| !! | TTCTTGTAGTAAATTGTAAT+TGG | + | chr7.3:20781782-20781801 | MS.gene068093:intron | 20.0% |
| !! | TTGTTCTACAAAATTTCAAA+TGG | + | chr7.3:20782202-20782221 | MS.gene068093:intron | 20.0% |
| !!! | ATTTACATGTTTTTGAAATC+AGG | + | chr7.3:20781604-20781623 | MS.gene068093:intron | 20.0% |
| !!! | CTTTATGTATGAAATGTTTT+AGG | + | chr7.3:20781510-20781529 | MS.gene068093:intron | 20.0% |
| !!! | TTATTCCTTTATTTCATTTG+AGG | + | chr7.3:20782252-20782271 | MS.gene068093:intron | 20.0% |
| !!! | TTTACATGTTTTTGAAATCA+GGG | + | chr7.3:20781605-20781624 | MS.gene068093:intron | 20.0% |
| ! | ACATTCCAATATTGATAGAA+CGG | - | chr7.3:20783037-20783056 | None:intergenic | 25.0% |
| ! | ACTGTGTATGAAATGATTTA+GGG | + | chr7.3:20781544-20781563 | MS.gene068093:intron | 25.0% |
| ! | ATGTATTTGTGTATCTATAG+CGG | + | chr7.3:20781746-20781765 | MS.gene068093:intron | 25.0% |
| ! | CAAAAACTAAACCAATTACT+TGG | - | chr7.3:20781473-20781492 | None:intergenic | 25.0% |
| ! | CAACAAAGTGAATTAATGTA+CGG | + | chr7.3:20782155-20782174 | MS.gene068093:intron | 25.0% |
| ! | TAAATAAAGAACAACTGAGA+AGG | - | chr7.3:20782446-20782465 | None:intergenic | 25.0% |
| ! | TACTGTGTATGAAATGATTT+AGG | + | chr7.3:20781543-20781562 | MS.gene068093:intron | 25.0% |
| ! | TCGTAAACTTATAAGTATAG+TGG | + | chr7.3:20781873-20781892 | MS.gene068093:intron | 25.0% |
| ! | TTCATTTAAAAGTTCAACAC+CGG | + | chr7.3:20782317-20782336 | MS.gene068093:intron | 25.0% |
| !! | CTTTATTTAGTGTATGTTGT+GGG | + | chr7.3:20782457-20782476 | MS.gene068093:intron | 25.0% |
| !! | TAGTTTGATTTCCAAGTAAT+TGG | + | chr7.3:20781459-20781478 | MS.gene068093:intron | 25.0% |
| !! | TCTTTATTTAGTGTATGTTG+TGG | + | chr7.3:20782456-20782475 | MS.gene068093:intron | 25.0% |
| !! | TTTTTCCGTTCTATCAATAT+TGG | + | chr7.3:20783029-20783048 | MS.gene068093:intron | 25.0% |
| !!! | GGTTTAGTTTTTGATGTTTT+TGG | + | chr7.3:20781480-20781499 | MS.gene068093:intron | 25.0% |
| !!! | TTAATTTGTTAGCTCCATAA+TGG | - | chr7.3:20783407-20783426 | None:intergenic | 25.0% |
| AATTCCTACCAAATTACTCA+AGG | - | chr7.3:20782131-20782150 | None:intergenic | 30.0% | |
| ATAGCATTCCTTGAGTAATT+TGG | + | chr7.3:20782120-20782139 | MS.gene068093:intron | 30.0% | |
| CAAAAAAACAACAGCAAAAG+TGG | - | chr7.3:20782795-20782814 | None:intergenic | 30.0% | |
| GAAGACCTCAAATGAAATAA+AGG | - | chr7.3:20782260-20782279 | None:intergenic | 30.0% | |
| TATTCTGGTACAGACTAATT+TGG | - | chr7.3:20782743-20782762 | None:intergenic | 30.0% | |
| ! | TTTTCTATTGCAGGATTTGA+AGG | + | chr7.3:20782852-20782871 | MS.gene068093:intron | 30.0% |
| !!! | CATGTATTTTGGTTGTATTC+TGG | - | chr7.3:20782758-20782777 | None:intergenic | 30.0% |
| !!! | GTTTTTGAAATCAGGGTTTT+TGG | + | chr7.3:20781612-20781631 | MS.gene068093:intron | 30.0% |
| !!! | TTGTTTTTTTGCATGAACTG+AGG | + | chr7.3:20782804-20782823 | MS.gene068093:intron | 30.0% |
| CAAAATACATGTACCTTGTC+AGG | + | chr7.3:20782767-20782786 | MS.gene068093:intron | 35.0% | |
| CATTCCTTGAGTAATTTGGT+AGG | + | chr7.3:20782124-20782143 | MS.gene068093:intron | 35.0% | |
| CTGACACCTACATCATATTT+GGG | + | chr7.3:20783140-20783159 | MS.gene068093:CDS | 35.0% | |
| TCTGACACCTACATCATATT+TGG | + | chr7.3:20783139-20783158 | MS.gene068093:CDS | 35.0% | |
| TGACACCTACATCATATTTG+GGG | + | chr7.3:20783141-20783160 | MS.gene068093:CDS | 35.0% | |
| TTGAGGTCTTCATTTAACAC+TGG | + | chr7.3:20782269-20782288 | MS.gene068093:intron | 35.0% | |
| ! | ATGGTTTGATGGTACAAAGT+TGG | + | chr7.3:20782404-20782423 | MS.gene068093:intron | 35.0% |
| ! | CTGACAAGGTACATGTATTT+TGG | - | chr7.3:20782769-20782788 | None:intergenic | 35.0% |
| ! | TGATGTTTTGCATGGTTTGA+TGG | + | chr7.3:20782393-20782412 | MS.gene068093:intron | 35.0% |
| !! | AATTACAAAAGTCGGTGTTG+TGG | - | chr7.3:20782615-20782634 | None:intergenic | 35.0% |
| AAGAAGCTCTTCTTGGGTTT+GGG | - | chr7.3:20781338-20781357 | None:intergenic | 40.0% | |
| AAGTGAAAAGAAGAGTCGCA+AGG | + | chr7.3:20782905-20782924 | MS.gene068093:CDS | 40.0% | |
| ACCACCAACTCAATATCCTT+GGG | - | chr7.3:20783313-20783332 | None:intergenic | 40.0% | |
| AGACATTGTTGCTGCCATTA+TGG | + | chr7.3:20783390-20783409 | MS.gene068093:CDS | 40.0% | |
| AGATCCCAAGGATATTGAGT+TGG | + | chr7.3:20783306-20783325 | MS.gene068093:CDS | 40.0% | |
| AGCTTCCCCAAATATGATGT+AGG | - | chr7.3:20783149-20783168 | None:intergenic | 40.0% | |
| ATGAACTGAGGCTACAATGA+TGG | + | chr7.3:20782816-20782835 | MS.gene068093:intron | 40.0% | |
| ATGATGTAGGTGTCAGAAGT+TGG | - | chr7.3:20783136-20783155 | None:intergenic | 40.0% | |
| CCTTCACGAAATGCAAAATG+AGG | - | chr7.3:20782093-20782112 | None:intergenic | 40.0% | |
| GCTTTAACAGCTCTTGATCT+TGG | - | chr7.3:20783352-20783371 | None:intergenic | 40.0% | |
| GTGCAGGTTAGACAAAATCA+CGG | - | chr7.3:20782496-20782515 | None:intergenic | 40.0% | |
| GTTGGACTCTTGAAAACATC+TGG | - | chr7.3:20783118-20783137 | None:intergenic | 40.0% | |
| ! | CCTCATTTTGCATTTCGTGA+AGG | + | chr7.3:20782090-20782109 | MS.gene068093:intron | 40.0% |
| ! | CTTTTCACTTCTGGTCTGTT+TGG | - | chr7.3:20782895-20782914 | None:intergenic | 40.0% |
| ! | GACAGTACCATGATTTGTCA+CGG | - | chr7.3:20782522-20782541 | None:intergenic | 40.0% |
| ! | TACAGCTGTGATGTTTTGCA+TGG | + | chr7.3:20782385-20782404 | MS.gene068093:intron | 40.0% |
| AAAGCTCTCAAAGCTGCCAA+TGG | + | chr7.3:20783367-20783386 | MS.gene068093:CDS | 45.0% | |
| AGCAAAAGTGGATCCTGACA+AGG | - | chr7.3:20782783-20782802 | None:intergenic | 45.0% | |
| AGCAGCAAGAAGCTCTTCTT+GGG | - | chr7.3:20781344-20781363 | None:intergenic | 45.0% | |
| CAAGAAGCTCTTCTTGGGTT+TGG | - | chr7.3:20781339-20781358 | None:intergenic | 45.0% | |
| CACCACCAACTCAATATCCT+TGG | - | chr7.3:20783314-20783333 | None:intergenic | 45.0% | |
| CGCAAGGCAATGCTTAAACT+CGG | + | chr7.3:20782921-20782940 | MS.gene068093:CDS | 45.0% | |
| CTCGGAATGAAAGCTGTTAC+TGG | + | chr7.3:20782939-20782958 | MS.gene068093:CDS | 45.0% | |
| CTTACGAGTCCTATGAAGCA+CGG | - | chr7.3:20782698-20782717 | None:intergenic | 45.0% | |
| GCTCCTAATTTGACCAATGC+GGG | + | chr7.3:20783223-20783242 | MS.gene068093:CDS | 45.0% | |
| GGATTTGAAGGTGATGCATC+TGG | + | chr7.3:20782864-20782883 | MS.gene068093:intron | 45.0% | |
| GGCTCCTAATTTGACCAATG+CGG | + | chr7.3:20783222-20783241 | MS.gene068093:CDS | 45.0% | |
| GTACTGTCGTAAACGAAGCA+CGG | + | chr7.3:20782534-20782553 | MS.gene068093:intron | 45.0% | |
| TCGTCTACATCCTCATCTTC+TGG | - | chr7.3:20783277-20783296 | None:intergenic | 45.0% | |
| TGACGAAGATGACGATGATG+AGG | + | chr7.3:20782005-20782024 | MS.gene068093:CDS | 45.0% | |
| TGGTATTGCTCCAGAAGATG+AGG | + | chr7.3:20783264-20783283 | MS.gene068093:CDS | 45.0% | |
| TTGAAGGTGATGCATCTGGT+AGG | + | chr7.3:20782868-20782887 | MS.gene068093:CDS | 45.0% | |
| ! | AGTACCATGATTTGTCACGG+TGG | - | chr7.3:20782519-20782538 | None:intergenic | 45.0% |
| ! | GCGACTCTTCTTTTCACTTC+TGG | - | chr7.3:20782904-20782923 | None:intergenic | 45.0% |
| ! | GTACCATGATTTGTCACGGT+GGG | - | chr7.3:20782518-20782537 | None:intergenic | 45.0% |
| !! | ATCTTCTGGAGCAATACCAG+AGG | - | chr7.3:20783263-20783282 | None:intergenic | 45.0% |
| !! | TACAAAAGTCGGTGTTGTGG+CGG | - | chr7.3:20782612-20782631 | None:intergenic | 45.0% |
| !! | TCCCAAGGATATTGAGTTGG+TGG | + | chr7.3:20783309-20783328 | MS.gene068093:CDS | 45.0% |
| AACGAAGCACGGACACTTCT+CGG | + | chr7.3:20782545-20782564 | MS.gene068093:intron | 50.0% | |
| AGTCGAGGATGACGATGATG+AGG | + | chr7.3:20781972-20781991 | MS.gene068093:CDS | 50.0% | |
| GAGCAGCAAGAAGCTCTTCT+TGG | - | chr7.3:20781345-20781364 | None:intergenic | 50.0% | |
| GAGCTCACAGCTACAAACTC+AGG | + | chr7.3:20783183-20783202 | MS.gene068093:CDS | 50.0% | |
| GAGGACGATGACAATGCTGA+AGG | + | chr7.3:20782024-20782043 | MS.gene068093:CDS | 50.0% | |
| GATGAGGATGTAGACGAGAC+TGG | + | chr7.3:20783280-20783299 | MS.gene068093:CDS | 50.0% | |
| GATTAGGCGTGTCCTAGTGT+CGG | + | chr7.3:20782567-20782586 | MS.gene068093:intron | 50.0% | |
| GGAGCAATACCAGAGGATTC+CGG | - | chr7.3:20783256-20783275 | None:intergenic | 50.0% | |
| GGCAGCAACAATGTCTCCAT+TGG | - | chr7.3:20783386-20783405 | None:intergenic | 50.0% | |
| TCATCGTCATCCTCGACTAC+AGG | - | chr7.3:20781970-20781989 | None:intergenic | 50.0% | |
| TGACGATGATGAGGACGATG+AGG | + | chr7.3:20781981-20782000 | MS.gene068093:CDS | 50.0% | |
| ! | GCACCCGCATTGGTCAAATT+AGG | - | chr7.3:20783229-20783248 | None:intergenic | 50.0% |
| CACGACACGTATCCGACACT+AGG | - | chr7.3:20782582-20782601 | None:intergenic | 55.0% | |
| CGAGACTGGTGTAGATCCCA+AGG | + | chr7.3:20783294-20783313 | MS.gene068093:CDS | 55.0% | |
| GCACCCACCGTGACAAATCA+TGG | + | chr7.3:20782512-20782531 | MS.gene068093:intron | 55.0% | |
| GCACGGACACTTCTCGGATT+AGG | + | chr7.3:20782551-20782570 | MS.gene068093:intron | 55.0% | |
| GCATGATGAGCCTGTAGTCG+AGG | + | chr7.3:20781957-20781976 | MS.gene068093:intron | 55.0% | |
| GTCCTATGAAGCACGGACAC+CGG | - | chr7.3:20782691-20782710 | None:intergenic | 55.0% | |
| TCAGGCTGCAGAGCAGTTCA+AGG | + | chr7.3:20783201-20783220 | MS.gene068093:CDS | 55.0% | |
| TGTGTCAGCGTGTCAGTGTC+CGG | + | chr7.3:20782669-20782688 | MS.gene068093:intron | 55.0% | |
| ! | TGATTTGTCACGGTGGGTGC+AGG | - | chr7.3:20782512-20782531 | None:intergenic | 55.0% |
| !! | GAGTTGGTGGTGACTCAAGC+TGG | + | chr7.3:20783322-20783341 | MS.gene068093:CDS | 55.0% |
| GACCAATGCGGGTGCAAAGC+CGG | + | chr7.3:20783234-20783253 | MS.gene068093:CDS | 60.0% | |
| GGTGCAAAGCCGGAATCCTC+TGG | + | chr7.3:20783244-20783263 | MS.gene068093:CDS | 60.0% | |
| GTCCGGTGTCCGTGCTTCAT+AGG | + | chr7.3:20782686-20782705 | MS.gene068093:intron | 60.0% | |
| TTCCGGCTTTGCACCCGCAT+TGG | - | chr7.3:20783239-20783258 | None:intergenic | 60.0% | |
| !! | AGTCGGTGTTGTGGCGGTGT+CGG | - | chr7.3:20782606-20782625 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 20781328 | 20783426 | 20781328 | ID=MS.gene068093 |
| chr7.3 | mRNA | 20781328 | 20783426 | 20781328 | ID=MS.gene068093.t1;Parent=MS.gene068093 |
| chr7.3 | exon | 20781328 | 20781387 | 20781328 | ID=MS.gene068093.t1.exon1;Parent=MS.gene068093.t1 |
| chr7.3 | CDS | 20781328 | 20781387 | 20781328 | ID=cds.MS.gene068093.t1;Parent=MS.gene068093.t1 |
| chr7.3 | exon | 20781958 | 20782045 | 20781958 | ID=MS.gene068093.t1.exon2;Parent=MS.gene068093.t1 |
| chr7.3 | CDS | 20781958 | 20782045 | 20781958 | ID=cds.MS.gene068093.t1;Parent=MS.gene068093.t1 |
| chr7.3 | exon | 20782865 | 20782995 | 20782865 | ID=MS.gene068093.t1.exon3;Parent=MS.gene068093.t1 |
| chr7.3 | CDS | 20782865 | 20782995 | 20782865 | ID=cds.MS.gene068093.t1;Parent=MS.gene068093.t1 |
| chr7.3 | exon | 20783094 | 20783426 | 20783094 | ID=MS.gene068093.t1.exon4;Parent=MS.gene068093.t1 |
| chr7.3 | CDS | 20783094 | 20783426 | 20783094 | ID=cds.MS.gene068093.t1;Parent=MS.gene068093.t1 |
| Gene Sequence |
| Protein sequence |
