Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039827.t1 | XP_003598765.2 | 100 | 159 | 0 | 0 | 1 | 159 | 1 | 159 | 7.40E-79 | 303.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039827.t1 | Q9SMW7 | 84.1 | 157 | 23 | 2 | 1 | 156 | 1 | 156 | 3.5e-61 | 235.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039827.t1 | B7FLX9 | 100.0 | 159 | 0 | 0 | 1 | 159 | 1 | 159 | 5.3e-79 | 303.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene50742 | MS.gene039827 | PPI |
| MS.gene044693 | MS.gene039827 | PPI |
| MS.gene039827 | MS.gene50742 | PPI |
| MS.gene068093 | MS.gene039827 | PPI |
| MS.gene013940 | MS.gene039827 | PPI |
| MS.gene039827 | MS.gene41902 | PPI |
| MS.gene73089 | MS.gene039827 | PPI |
| MS.gene23317 | MS.gene039827 | PPI |
| MS.gene039827 | MS.gene42247 | PPI |
| MS.gene003688 | MS.gene039827 | PPI |
| MS.gene41901 | MS.gene039827 | PPI |
| MS.gene003685 | MS.gene039827 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039827.t1 | MTR_3g020660 | 100.000 | 159 | 0 | 0 | 1 | 159 | 1 | 159 | 1.08e-114 | 322 |
| MS.gene039827.t1 | MTR_4g071000 | 89.241 | 158 | 17 | 0 | 1 | 158 | 1 | 158 | 1.57e-101 | 288 |
| MS.gene039827.t1 | MTR_3g020520 | 94.309 | 123 | 7 | 0 | 37 | 159 | 404 | 526 | 6.24e-76 | 235 |
| MS.gene039827.t1 | MTR_3g020640 | 84.559 | 136 | 14 | 1 | 24 | 159 | 1003 | 1131 | 4.66e-70 | 229 |
| MS.gene039827.t1 | MTR_3g020650 | 82.353 | 85 | 15 | 0 | 38 | 122 | 1028 | 1112 | 2.46e-40 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039827.t1 | AT1G17880 | 85.430 | 151 | 20 | 2 | 1 | 150 | 1 | 150 | 2.76e-87 | 253 |
| MS.gene039827.t1 | AT1G73230 | 85.987 | 157 | 21 | 1 | 1 | 156 | 1 | 157 | 1.17e-84 | 246 |
Find 43 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGGAAGTCAACATCTTTA+AGG | 0.215410 | 3.3:-12639116 | MS.gene039827:CDS |
| GTTGCATCAGCTCCGGCTTC+AGG | 0.287425 | 3.3:+12637258 | None:intergenic |
| ATGTAAATTACATACCTAAT+TGG | 0.346928 | 3.3:+12637405 | None:intergenic |
| CAAAGCACTCTGAAGAGAAT+TGG | 0.364468 | 3.3:-12639160 | MS.gene039827:CDS |
| CCCAACATCATTCACCAATT+AGG | 0.370291 | 3.3:-12637419 | MS.gene039827:intron |
| CATCTATTGCTGCCAATACC+TGG | 0.384746 | 3.3:-12638965 | MS.gene039827:CDS |
| AAATGCAGGGCCGGATAACT+TGG | 0.413397 | 3.3:-12637322 | MS.gene039827:intron |
| TCCACTAACAACCCAGGTAT+TGG | 0.451379 | 3.3:+12638953 | None:intergenic |
| CCTAATTGGTGAATGATGTT+GGG | 0.465851 | 3.3:+12637419 | None:intergenic |
| AGCTGAGCAATTTCAGAAGC+AGG | 0.470262 | 3.3:-12637283 | MS.gene039827:CDS |
| CAGAAGCAGGCTCCTGAAGC+CGG | 0.475940 | 3.3:-12637270 | MS.gene039827:CDS |
| TCCACCGGTTCTAACAGAAC+CGG | 0.478108 | 3.3:+12639601 | None:intergenic |
| GCCAATACCTGGGTTGTTAG+TGG | 0.480516 | 3.3:-12638954 | MS.gene039827:CDS |
| GCTGTACCAGATCTTGTCCC+GGG | 0.488827 | 3.3:-12637210 | MS.gene039827:CDS |
| CTGAAGAGAATTGGAGTGAA+TGG | 0.490986 | 3.3:-12639151 | MS.gene039827:CDS |
| AAAGATGTTGACTTCCTCAA+TGG | 0.494343 | 3.3:+12639120 | None:intergenic |
| TCTGTTAGAACCGGTGGAAA+GGG | 0.501562 | 3.3:-12639596 | MS.gene039827:CDS |
| TGCTGCGGTTGCATCAGCTC+CGG | 0.501636 | 3.3:+12637251 | None:intergenic |
| TGCTGTACCAGATCTTGTCC+CGG | 0.509504 | 3.3:-12637211 | MS.gene039827:CDS |
| ATGTTGACTTCCTCAATGGC+AGG | 0.514214 | 3.3:+12639124 | None:intergenic |
| ACCTAATTGGTGAATGATGT+TGG | 0.517368 | 3.3:+12637418 | None:intergenic |
| TTCTGTTAGAACCGGTGGAA+AGG | 0.527490 | 3.3:-12639597 | MS.gene039827:CDS |
| GTGAATTAATATTACCTTTG+GGG | 0.533113 | 3.3:+12639068 | None:intergenic |
| GCAGTTTCAAAAGTCTCCCC+CGG | 0.535461 | 3.3:+12637192 | None:intergenic |
| TGATGCAACCGCAGCACAAG+AGG | 0.535856 | 3.3:-12637244 | MS.gene039827:CDS |
| GCCGGTTCTGTTAGAACCGG+TGG | 0.539695 | 3.3:-12639602 | MS.gene039827:CDS |
| ATGGCCGGTTCTGTTAGAAC+CGG | 0.553954 | 3.3:-12639605 | MS.gene039827:CDS |
| CGTCTGTAGTAGCTGTCTTG+TGG | 0.564591 | 3.3:+12639194 | None:intergenic |
| TGTAGAAAAGTTGATGAAGA+TGG | 0.565842 | 3.3:-12639624 | MS.gene039827:CDS |
| TCTGACTGTACCCTTTCCAC+CGG | 0.575776 | 3.3:+12639586 | None:intergenic |
| AACTGCTGCTGAGGAGACCA+AGG | 0.581530 | 3.3:-12637175 | MS.gene039827:CDS |
| GAATGGCATCCCTGCCATTG+AGG | 0.585006 | 3.3:-12639134 | MS.gene039827:CDS |
| ATCTATTGCTGCCAATACCT+GGG | 0.585362 | 3.3:-12638964 | MS.gene039827:CDS |
| ATCATCATCCTCTTGTGCTG+CGG | 0.587770 | 3.3:+12637236 | None:intergenic |
| GTATTCTTACTCTTTGTCTG+AGG | 0.595422 | 3.3:+12638927 | None:intergenic |
| ATTCAGTTTCTAAACCCCAA+AGG | 0.603569 | 3.3:-12639082 | MS.gene039827:intron |
| GAAAAGTTGATGAAGATGGC+CGG | 0.607204 | 3.3:-12639620 | MS.gene039827:CDS |
| CTGTACCAGATCTTGTCCCG+GGG | 0.614144 | 3.3:-12637209 | MS.gene039827:CDS |
| TGTTGACTTCCTCAATGGCA+GGG | 0.629095 | 3.3:+12639125 | None:intergenic |
| GTGGAAAGGGTACAGTCAGA+AGG | 0.638872 | 3.3:-12639583 | MS.gene039827:intron |
| CTAATTGGTGAATGATGTTG+GGG | 0.645637 | 3.3:+12637420 | None:intergenic |
| AGGAGATCCACTAACAACCC+AGG | 0.672890 | 3.3:+12638947 | None:intergenic |
| TGTACCAGATCTTGTCCCGG+GGG | 0.745014 | 3.3:-12637208 | MS.gene039827:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATAATAATAATCCA+AGG | + | chr3.3:12638604-12638623 | None:intergenic | 10.0% |
| !!! | AGTATATTGTTTTTAAATTA+TGG | - | chr3.3:12638866-12638885 | MS.gene039827:intron | 10.0% |
| !!! | TTTTCTTATAATAATAAAGT+GGG | - | chr3.3:12638524-12638543 | MS.gene039827:intron | 10.0% |
| !!! | TTTTTCTTATAATAATAAAG+TGG | - | chr3.3:12638523-12638542 | MS.gene039827:intron | 10.0% |
| !! | AAATTCATAATGTATTCATA+AGG | + | chr3.3:12639050-12639069 | None:intergenic | 15.0% |
| !!! | AATCTTATATTCTTATTTTC+TGG | - | chr3.3:12639453-12639472 | MS.gene039827:intron | 15.0% |
| !!! | AGTAATAGTACTTTTTTAAA+GGG | - | chr3.3:12638832-12638851 | MS.gene039827:intron | 15.0% |
| !!! | TAGTAATAGTACTTTTTTAA+AGG | - | chr3.3:12638831-12638850 | MS.gene039827:intron | 15.0% |
| !! | ATAATAATAATAATCCAAGG+AGG | + | chr3.3:12638601-12638620 | None:intergenic | 20.0% |
| !! | ATGTAAATTACATACCTAAT+TGG | + | chr3.3:12639397-12639416 | None:intergenic | 20.0% |
| !! | ATTATAGTATACACTAAAGT+GGG | - | chr3.3:12638619-12638638 | MS.gene039827:intron | 20.0% |
| !! | TATTATAGTATACACTAAAG+TGG | - | chr3.3:12638618-12638637 | MS.gene039827:intron | 20.0% |
| !! | TTAAGAACATAACTTTAACA+TGG | + | chr3.3:12637285-12637304 | None:intergenic | 20.0% |
| ! | AATTGTAACAAAACATGGTA+TGG | + | chr3.3:12638147-12638166 | None:intergenic | 25.0% |
| ! | ATATGATACACATCAAACAA+TGG | + | chr3.3:12638088-12638107 | None:intergenic | 25.0% |
| ! | CGTGAATTAATATTACCTTT+GGG | + | chr3.3:12637735-12637754 | None:intergenic | 25.0% |
| ! | GAAATCAGTGAAAAATCAAA+TGG | + | chr3.3:12639298-12639317 | None:intergenic | 25.0% |
| ! | GTGAATTAATATTACCTTTG+GGG | + | chr3.3:12637734-12637753 | None:intergenic | 25.0% |
| ! | TCGTGAATTAATATTACCTT+TGG | + | chr3.3:12637736-12637755 | None:intergenic | 25.0% |
| ! | TGTGTATCATATTGAAATGT+TGG | - | chr3.3:12638096-12638115 | MS.gene039827:intron | 25.0% |
| !! | ACAATTTTGCAAAATTGAAC+TGG | + | chr3.3:12637439-12637458 | None:intergenic | 25.0% |
| !! | ATATTTGATAATATGCCATG+AGG | + | chr3.3:12637917-12637936 | None:intergenic | 25.0% |
| !! | CAAGTCTTATAATCAAAATG+AGG | + | chr3.3:12639257-12639276 | None:intergenic | 25.0% |
| !!! | TACCATGTTTTGTTACAATT+TGG | - | chr3.3:12638147-12638166 | MS.gene039827:intron | 25.0% |
| !!! | TTGCAAAATTGTTACTTTCA+TGG | - | chr3.3:12637447-12637466 | MS.gene039827:intron | 25.0% |
| AAGGAAAAAGAGAAAGAGAA+AGG | - | chr3.3:12638434-12638453 | MS.gene039827:intron | 30.0% | |
| ACTGGAATTTATGAGATACA+TGG | + | chr3.3:12637421-12637440 | None:intergenic | 30.0% | |
| AGGAAAAAGAGAAAGAGAAA+GGG | - | chr3.3:12638435-12638454 | MS.gene039827:intron | 30.0% | |
| CATCAATGTTCAGAAATTGT+AGG | - | chr3.3:12638051-12638070 | MS.gene039827:intron | 30.0% | |
| CTCCAAATTGTAACAAAACA+TGG | + | chr3.3:12638152-12638171 | None:intergenic | 30.0% | |
| GCATCAAACTGAAATAATAC+AGG | + | chr3.3:12637501-12637520 | None:intergenic | 30.0% | |
| TAATAATCCAACTGATTGCA+AGG | + | chr3.3:12638700-12638719 | None:intergenic | 30.0% | |
| TTGGAACTTCTGTTACAATT+TGG | - | chr3.3:12638115-12638134 | MS.gene039827:intron | 30.0% | |
| ! | TTCAGATTTTCCAAGTTATC+CGG | + | chr3.3:12639490-12639509 | None:intergenic | 30.0% |
| ! | TTGTTACAATTTGGAGTGTA+TGG | - | chr3.3:12638156-12638175 | MS.gene039827:intron | 30.0% |
| !! | AGCCTTCTTCTTTCTAAAAT+GGG | + | chr3.3:12637583-12637602 | None:intergenic | 30.0% |
| !! | CTTATTTTCTGGAAAATGCA+GGG | - | chr3.3:12639464-12639483 | MS.gene039827:intron | 30.0% |
| !! | TACCCATTTTAGAAAGAAGA+AGG | - | chr3.3:12637578-12637597 | MS.gene039827:intron | 30.0% |
| !! | TGTAGAAAAGTTGATGAAGA+TGG | - | chr3.3:12637175-12637194 | MS.gene039827:CDS | 30.0% |
| !!! | AGATCTGATTTTGTTTTGTG+TGG | - | chr3.3:12638486-12638505 | MS.gene039827:intron | 30.0% |
| !!! | TCTTATTTTCTGGAAAATGC+AGG | - | chr3.3:12639463-12639482 | MS.gene039827:intron | 30.0% |
| AAAGAGAAAGGGAAAAGTGA+AGG | - | chr3.3:12638446-12638465 | MS.gene039827:intron | 35.0% | |
| AAAGATGTTGACAGTGTTCT+AGG | + | chr3.3:12637992-12638011 | None:intergenic | 35.0% | |
| ACCTAATTGGTGAATGATGT+TGG | + | chr3.3:12639384-12639403 | None:intergenic | 35.0% | |
| ATTCAGTTTCTAAACCCCAA+AGG | - | chr3.3:12637717-12637736 | MS.gene039827:intron | 35.0% | |
| CCTAATTGGTGAATGATGTT+GGG | + | chr3.3:12639383-12639402 | None:intergenic | 35.0% | |
| CTAATTGGTGAATGATGTTG+GGG | + | chr3.3:12639382-12639401 | None:intergenic | 35.0% | |
| GGAATCTCTGTTGTTAATAG+CGG | - | chr3.3:12638177-12638196 | MS.gene039827:intron | 35.0% | |
| GTATTCTTACTCTTTGTCTG+AGG | + | chr3.3:12637875-12637894 | None:intergenic | 35.0% | |
| TCCATACATAGTTGTCAAAG+CGG | + | chr3.3:12639226-12639245 | None:intergenic | 35.0% | |
| TGAGGAAGTCAACATCTTTA+AGG | - | chr3.3:12637683-12637702 | MS.gene039827:intron | 35.0% | |
| TTATGAGATACATGGCAAAG+TGG | + | chr3.3:12637413-12637432 | None:intergenic | 35.0% | |
| ! | AAAAAGAACTACTGGTTGCA+AGG | + | chr3.3:12638674-12638693 | None:intergenic | 35.0% |
| ! | AAGTAGTTCTTTTTCCTCCT+TGG | - | chr3.3:12638584-12638603 | MS.gene039827:intron | 35.0% |
| ! | CAGCCTTCTTCTTTCTAAAA+TGG | + | chr3.3:12637584-12637603 | None:intergenic | 35.0% |
| !! | AAAGATGTTGACTTCCTCAA+TGG | + | chr3.3:12637682-12637701 | None:intergenic | 35.0% |
| !!! | ATTTTTTCGTCACATCCTCA+TGG | - | chr3.3:12637899-12637918 | MS.gene039827:intron | 35.0% |
| AAAGGGAAAAGTGAAGGAAG+AGG | - | chr3.3:12638452-12638471 | MS.gene039827:intron | 40.0% | |
| AAGGGAAAAGTGAAGGAAGA+GGG | - | chr3.3:12638453-12638472 | MS.gene039827:intron | 40.0% | |
| AGATACATGGCAAAGTGGTA+AGG | + | chr3.3:12637408-12637427 | None:intergenic | 40.0% | |
| AGGTTAGATAGATTGACGAC+GGG | - | chr3.3:12638388-12638407 | MS.gene039827:intron | 40.0% | |
| ATATCCTGCAACTCTGCAAA+AGG | + | chr3.3:12639356-12639375 | None:intergenic | 40.0% | |
| ATCTATTGCTGCCAATACCT+GGG | - | chr3.3:12637835-12637854 | MS.gene039827:intron | 40.0% | |
| CAAGGAGGAAAAAGAACTAC+TGG | + | chr3.3:12638586-12638605 | None:intergenic | 40.0% | |
| CAGGTTAGATAGATTGACGA+CGG | - | chr3.3:12638387-12638406 | MS.gene039827:intron | 40.0% | |
| CCCAACATCATTCACCAATT+AGG | - | chr3.3:12639380-12639399 | MS.gene039827:intron | 40.0% | |
| CTGAAGAGAATTGGAGTGAA+TGG | - | chr3.3:12637648-12637667 | MS.gene039827:intron | 40.0% | |
| TAATCCAACTGATTGCAAGG+AGG | + | chr3.3:12638697-12638716 | None:intergenic | 40.0% | |
| TATCCTGCAACTCTGCAAAA+GGG | + | chr3.3:12639355-12639374 | None:intergenic | 40.0% | |
| TCCGCTTTGACAACTATGTA+TGG | - | chr3.3:12639222-12639241 | MS.gene039827:intron | 40.0% | |
| ! | CAAAGCACTCTGAAGAGAAT+TGG | - | chr3.3:12637639-12637658 | MS.gene039827:intron | 40.0% |
| ! | TTTTCCTCCTTGCAATCAGT+TGG | - | chr3.3:12638690-12638709 | MS.gene039827:intron | 40.0% |
| !! | GAAAAGTTGATGAAGATGGC+CGG | - | chr3.3:12637179-12637198 | MS.gene039827:CDS | 40.0% |
| !! | TGTTGACAGTGTTCTAGGAT+AGG | + | chr3.3:12637987-12638006 | None:intergenic | 40.0% |
| AGCTGAGCAATTTCAGAAGC+AGG | - | chr3.3:12639516-12639535 | MS.gene039827:intron | 45.0% | |
| AGGGAAAAGCGGATCAATAG+CGG | - | chr3.3:12638275-12638294 | MS.gene039827:intron | 45.0% | |
| ATCATCATCCTCTTGTGCTG+CGG | + | chr3.3:12639566-12639585 | None:intergenic | 45.0% | |
| CATCTATTGCTGCCAATACC+TGG | - | chr3.3:12637834-12637853 | MS.gene039827:intron | 45.0% | |
| TAGTTGTCAAAGCGGAAACG+CGG | + | chr3.3:12639218-12639237 | None:intergenic | 45.0% | |
| TCCACTAACAACCCAGGTAT+TGG | + | chr3.3:12637849-12637868 | None:intergenic | 45.0% | |
| TCTGTTAGAACCGGTGGAAA+GGG | - | chr3.3:12637203-12637222 | MS.gene039827:CDS | 45.0% | |
| TTAGATAGATTGACGACGGG+AGG | - | chr3.3:12638391-12638410 | MS.gene039827:intron | 45.0% | |
| TTCTGTTAGAACCGGTGGAA+AGG | - | chr3.3:12637202-12637221 | MS.gene039827:CDS | 45.0% | |
| ! | AAGAACTACTGGTTGCAAGG+AGG | + | chr3.3:12638671-12638690 | None:intergenic | 45.0% |
| ! | TGCACAAAACGGCTGTGTTT+TGG | - | chr3.3:12638358-12638377 | MS.gene039827:intron | 45.0% |
| ! | TTTCCCTTTTGCAGAGTTGC+AGG | - | chr3.3:12639349-12639368 | MS.gene039827:intron | 45.0% |
| !! | ATGTTGACTTCCTCAATGGC+AGG | + | chr3.3:12637678-12637697 | None:intergenic | 45.0% |
| !! | TGTTGACTTCCTCAATGGCA+GGG | + | chr3.3:12637677-12637696 | None:intergenic | 45.0% |
| !! | TTTTCTGGAAAATGCAGGGC+CGG | - | chr3.3:12639468-12639487 | MS.gene039827:intron | 45.0% |
| !!! | GACTTTTGAAACTGCTGCTG+AGG | - | chr3.3:12639615-12639634 | MS.gene039827:CDS | 45.0% |
| AAATGCAGGGCCGGATAACT+TGG | - | chr3.3:12639477-12639496 | MS.gene039827:intron | 50.0% | |
| AGGAGATCCACTAACAACCC+AGG | + | chr3.3:12637855-12637874 | None:intergenic | 50.0% | |
| CAGTTTCAAAAGTCTCCCCC+GGG | + | chr3.3:12639609-12639628 | None:intergenic | 50.0% | |
| CGTCTGTAGTAGCTGTCTTG+TGG | + | chr3.3:12637608-12637627 | None:intergenic | 50.0% | |
| GCAGTTTCAAAAGTCTCCCC+CGG | + | chr3.3:12639610-12639629 | None:intergenic | 50.0% | |
| GCCAATACCTGGGTTGTTAG+TGG | - | chr3.3:12637845-12637864 | MS.gene039827:intron | 50.0% | |
| GGGAAAAGCGGATCAATAGC+GGG | - | chr3.3:12638276-12638295 | MS.gene039827:intron | 50.0% | |
| TCTGACTGTACCCTTTCCAC+CGG | + | chr3.3:12637216-12637235 | None:intergenic | 50.0% | |
| TGCTGTACCAGATCTTGTCC+CGG | - | chr3.3:12639588-12639607 | MS.gene039827:CDS | 50.0% | |
| ! | ATGGCCGGTTCTGTTAGAAC+CGG | - | chr3.3:12637194-12637213 | MS.gene039827:CDS | 50.0% |
| ! | GTGGAAAGGGTACAGTCAGA+AGG | - | chr3.3:12637216-12637235 | MS.gene039827:CDS | 50.0% |
| !! | TCCACCGGTTCTAACAGAAC+CGG | + | chr3.3:12637201-12637220 | None:intergenic | 50.0% |
| !!! | GGCTGTGTTTTGGCTGTTTC+AGG | - | chr3.3:12638368-12638387 | MS.gene039827:intron | 50.0% |
| AACTGCTGCTGAGGAGACCA+AGG | - | chr3.3:12639624-12639643 | MS.gene039827:CDS | 55.0% | |
| AGAGGAAGGAGAAGGGAGGA+AGG | - | chr3.3:12638415-12638434 | MS.gene039827:intron | 55.0% | |
| AGATTGACGACGGGAGGAAG+AGG | - | chr3.3:12638397-12638416 | MS.gene039827:intron | 55.0% | |
| AGGAAGAGGAAGGAGAAGGG+AGG | - | chr3.3:12638411-12638430 | MS.gene039827:intron | 55.0% | |
| AGTCGCGCGTTAGGGAAAAG+CGG | - | chr3.3:12638264-12638283 | MS.gene039827:intron | 55.0% | |
| CAAAAAACAGCCTGCCGCGT+CGG | - | chr3.3:12638231-12638250 | MS.gene039827:intron | 55.0% | |
| CTGTACCAGATCTTGTCCCG+GGG | - | chr3.3:12639590-12639609 | MS.gene039827:CDS | 55.0% | |
| GAATGGCATCCCTGCCATTG+AGG | - | chr3.3:12637665-12637684 | MS.gene039827:intron | 55.0% | |
| GCTGTACCAGATCTTGTCCC+GGG | - | chr3.3:12639589-12639608 | MS.gene039827:CDS | 55.0% | |
| GGCCACCCCAAAAATTGACG+CGG | + | chr3.3:12639187-12639206 | None:intergenic | 55.0% | |
| GGGAGGAAGAGGAAGGAGAA+GGG | - | chr3.3:12638408-12638427 | MS.gene039827:intron | 55.0% | |
| TGATGCAACCGCAGCACAAG+AGG | - | chr3.3:12639555-12639574 | MS.gene039827:intron | 55.0% | |
| TGTACCAGATCTTGTCCCGG+GGG | - | chr3.3:12639591-12639610 | MS.gene039827:CDS | 55.0% | |
| TTCCGGGTCGGTGCACAAAA+CGG | - | chr3.3:12638347-12638366 | MS.gene039827:intron | 55.0% | |
| ! | ACCGCGCCGCGTCAATTTTT+GGG | - | chr3.3:12639178-12639197 | MS.gene039827:CDS | 55.0% |
| ! | CTTTTCCCTAACGCGCGACT+CGG | + | chr3.3:12638264-12638283 | None:intergenic | 55.0% |
| ! | TACCGCGCCGCGTCAATTTT+TGG | - | chr3.3:12639177-12639196 | MS.gene039827:CDS | 55.0% |
| !! | CGGATCAATAGCGGGTTTCG+CGG | - | chr3.3:12638284-12638303 | MS.gene039827:intron | 55.0% |
| !! | GGTCAAAACGCCCGCTTTTC+CGG | - | chr3.3:12638330-12638349 | MS.gene039827:intron | 55.0% |
| !! | GTCAAAACGCCCGCTTTTCC+GGG | - | chr3.3:12638331-12638350 | MS.gene039827:intron | 55.0% |
| AATTGACGCGGCGCGGTATG+CGG | + | chr3.3:12639175-12639194 | None:intergenic | 60.0% | |
| CAGAAGCAGGCTCCTGAAGC+CGG | - | chr3.3:12639529-12639548 | MS.gene039827:intron | 60.0% | |
| CCCCAAAAATTGACGCGGCG+CGG | + | chr3.3:12639182-12639201 | None:intergenic | 60.0% | |
| CGGGAGGAAGAGGAAGGAGA+AGG | - | chr3.3:12638407-12638426 | MS.gene039827:intron | 60.0% | |
| GTTGCATCAGCTCCGGCTTC+AGG | + | chr3.3:12639544-12639563 | None:intergenic | 60.0% | |
| TGACGACGGGAGGAAGAGGA+AGG | - | chr3.3:12638401-12638420 | MS.gene039827:intron | 60.0% | |
| TGCTGCGGTTGCATCAGCTC+CGG | + | chr3.3:12639551-12639570 | None:intergenic | 60.0% | |
| ! | CCGCGCCGCGTCAATTTTTG+GGG | - | chr3.3:12639179-12639198 | MS.gene039827:CDS | 60.0% |
| ! | GCCGGTTCTGTTAGAACCGG+TGG | - | chr3.3:12637197-12637216 | MS.gene039827:CDS | 60.0% |
| ! | GCGGGCGCTTTTACATGACG+CGG | + | chr3.3:12639145-12639164 | None:intergenic | 60.0% |
| ! | TGTGCACCGACCCGGAAAAG+CGG | + | chr3.3:12638344-12638363 | None:intergenic | 60.0% |
| !! | AAACGCCCGCTTTTCCGGGT+CGG | - | chr3.3:12638335-12638354 | MS.gene039827:intron | 60.0% |
| !! | AGCCGTTTTGTGCACCGACC+CGG | + | chr3.3:12638352-12638371 | None:intergenic | 60.0% |
| !! | CGCCGCGTCAATTTTTGGGG+TGG | - | chr3.3:12639182-12639201 | MS.gene039827:CDS | 60.0% |
| ACCCGCTCCGCTCCATGCAA+AGG | + | chr3.3:12638313-12638332 | None:intergenic | 65.0% | |
| ATTGACGCGGCGCGGTATGC+GGG | + | chr3.3:12639174-12639193 | None:intergenic | 65.0% | |
| CGCCTTTGCATGGAGCGGAG+CGG | - | chr3.3:12638308-12638327 | MS.gene039827:intron | 65.0% | |
| CGCTACCGAGTCGCGCGTTA+GGG | - | chr3.3:12638256-12638275 | MS.gene039827:intron | 65.0% | |
| CGCTCCGCTCCATGCAAAGG+CGG | + | chr3.3:12638310-12638329 | None:intergenic | 65.0% | |
| GCCTTTGCATGGAGCGGAGC+GGG | - | chr3.3:12638309-12638328 | MS.gene039827:intron | 65.0% | |
| GTCAAAGCGGAAACGCGGCG+CGG | + | chr3.3:12639213-12639232 | None:intergenic | 65.0% | |
| GTCTCCCCCGGGACAAGATC+TGG | + | chr3.3:12639598-12639617 | None:intergenic | 65.0% | |
| GTTTCGCGGCCGCCTTTGCA+TGG | - | chr3.3:12638298-12638317 | MS.gene039827:intron | 65.0% | |
| ! | GTGCACCGACCCGGAAAAGC+GGG | + | chr3.3:12638343-12638362 | None:intergenic | 65.0% |
| GCGCTACCGAGTCGCGCGTT+AGG | - | chr3.3:12638255-12638274 | MS.gene039827:intron | 70.0% | |
| GCGGCCGCCTTTGCATGGAG+CGG | - | chr3.3:12638303-12638322 | MS.gene039827:intron | 70.0% | |
| ! | GACTCGGTAGCGCTCCGACG+CGG | + | chr3.3:12638248-12638267 | None:intergenic | 70.0% |
| ! | AGCGGAAACGCGGCGCGGCG+CGG | + | chr3.3:12639208-12639227 | None:intergenic | 80.0% |
| ! | CGCGGTATGCGGGCGCGACG+CGG | + | chr3.3:12639164-12639183 | None:intergenic | 80.0% |
| ! | CGGTAGCGCTCCGACGCGGC+AGG | + | chr3.3:12638244-12638263 | None:intergenic | 80.0% |
| ! | CTCCCGCCGCTATCGCGGCG+CGG | - | chr3.3:12638203-12638222 | MS.gene039827:intron | 80.0% |
| ! | GCCGCTATCGCGGCGCGGAG+CGG | - | chr3.3:12638208-12638227 | MS.gene039827:intron | 80.0% |
| ! | GCCGCTCCGCGCCGCGATAG+CGG | + | chr3.3:12638212-12638231 | None:intergenic | 80.0% |
| ! | GCGGTATGCGGGCGCGACGC+GGG | + | chr3.3:12639163-12639182 | None:intergenic | 80.0% |
| ! | GGCCGCTCCCGCCGCTATCG+CGG | - | chr3.3:12638198-12638217 | MS.gene039827:intron | 80.0% |
| !! | CGCCGCGATAGCGGCGGGAG+CGG | + | chr3.3:12638203-12638222 | None:intergenic | 80.0% |
| !! | CTCCGCGCCGCGATAGCGGC+GGG | + | chr3.3:12638208-12638227 | None:intergenic | 80.0% |
| !! | GCTCCGCGCCGCGATAGCGG+CGG | + | chr3.3:12638209-12638228 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 12637170 | 12639651 | 12637170 | ID=MS.gene039827 |
| chr3.3 | mRNA | 12637170 | 12639651 | 12637170 | ID=MS.gene039827.t1;Parent=MS.gene039827 |
| chr3.3 | exon | 12639584 | 12639651 | 12639584 | ID=MS.gene039827.t1.exon1;Parent=MS.gene039827.t1 |
| chr3.3 | CDS | 12639584 | 12639651 | 12639584 | ID=cds.MS.gene039827.t1;Parent=MS.gene039827.t1 |
| chr3.3 | exon | 12639083 | 12639231 | 12639083 | ID=MS.gene039827.t1.exon2;Parent=MS.gene039827.t1 |
| chr3.3 | CDS | 12639083 | 12639231 | 12639083 | ID=cds.MS.gene039827.t1;Parent=MS.gene039827.t1 |
| chr3.3 | exon | 12638937 | 12638993 | 12638937 | ID=MS.gene039827.t1.exon3;Parent=MS.gene039827.t1 |
| chr3.3 | CDS | 12638937 | 12638993 | 12638937 | ID=cds.MS.gene039827.t1;Parent=MS.gene039827.t1 |
| chr3.3 | exon | 12637420 | 12637458 | 12637420 | ID=MS.gene039827.t1.exon4;Parent=MS.gene039827.t1 |
| chr3.3 | CDS | 12637420 | 12637458 | 12637420 | ID=cds.MS.gene039827.t1;Parent=MS.gene039827.t1 |
| chr3.3 | exon | 12637170 | 12637336 | 12637170 | ID=MS.gene039827.t1.exon5;Parent=MS.gene039827.t1 |
| chr3.3 | CDS | 12637170 | 12637336 | 12637170 | ID=cds.MS.gene039827.t1;Parent=MS.gene039827.t1 |
| Gene Sequence |
| Protein sequence |
