AlfalfaGEDB | MS.gene068582

M. sativa cultivar XinJiangDaYe / MS.gene068582

KEGG: K04131
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068582.t1	XP_013467705.1	97.1	105	3	0	12	116	88	192	6.30E-43	183.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068582.t1	P93751	86.5	37	5	0	12	48	95	131	1.1e-11	70.9

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068582.t1	A0A072VIV1	97.1	105	3	0	12	116	88	192	4.5e-43	183.3

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049351	MS.gene068582	0.823653	1.23E-53	-1.69E-46
MS.gene049758	MS.gene068582	0.803385	3.58E-49	-1.69E-46
MS.gene050301	MS.gene068582	0.806784	6.95E-50	-1.69E-46
MS.gene052078	MS.gene068582	0.814369	1.60E-51	-1.69E-46
MS.gene052188	MS.gene068582	0.80021	1.60E-48	-1.69E-46
MS.gene052485	MS.gene068582	0.825594	4.30E-54	-1.69E-46
MS.gene053836	MS.gene068582	0.813186	2.91E-51	-1.69E-46
MS.gene055277	MS.gene068582	0.83043	2.95E-55	-1.69E-46
MS.gene055422	MS.gene068582	0.820084	8.27E-53	-1.69E-46
MS.gene055428	MS.gene068582	0.816198	6.26E-52	-1.69E-46
MS.gene056191	MS.gene068582	0.828374	9.32E-55	-1.69E-46
MS.gene058002	MS.gene068582	0.822041	2.93E-53	-1.69E-46
MS.gene05811	MS.gene068582	0.832868	7.39E-56	-1.69E-46
MS.gene058660	MS.gene068582	0.813987	1.94E-51	-1.69E-46
MS.gene058993	MS.gene068582	0.805781	1.13E-49	-1.69E-46
MS.gene05907	MS.gene068582	0.826403	2.77E-54	-1.69E-46
MS.gene059695	MS.gene068582	0.800277	1.55E-48	-1.69E-46
MS.gene05984	MS.gene068582	0.82525	5.19E-54	-1.69E-46
MS.gene06037	MS.gene068582	0.821375	4.18E-53	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 17 sgRNAs with CRISPR-Local

Find 17 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCTCAACAACAACCTATTAA+TGG	0.266540	1.2:-41835698	MS.gene068582:CDS
AGCTAAGGACTACCATTAAT+AGG	0.397702	1.2:+41835686	None:intergenic
ACAACATCTTCAATCAACTA+TGG	0.410424	1.2:-41835894	MS.gene068582:CDS
TGAGAGTAAGAAGAAGTTGT+TGG	0.413123	1.2:+41835716	None:intergenic
TTTCCTACTTCACAAGCCTT+AGG	0.446992	1.2:-41835962	MS.gene068582:CDS
GTGTTCCATGTTGGATAAGA+AGG	0.460404	1.2:+41835764	None:intergenic
CCACCTAAGGCTTGTGAAGT+AGG	0.467927	1.2:+41835959	None:intergenic
AAAGAGGATGCTGTTGTTGA+TGG	0.471809	1.2:+41835828	None:intergenic
GCTGTTGTTGATGGTGATGA+TGG	0.514460	1.2:+41835837	None:intergenic
CATGGAACACAAACTCAACT+AGG	0.515152	1.2:-41835751	MS.gene068582:CDS
GTTGAGTTTGTGTTCCATGT+TGG	0.535384	1.2:+41835755	None:intergenic
CCTACTTCACAAGCCTTAGG+TGG	0.566151	1.2:-41835959	MS.gene068582:CDS
AGTAAGAAGAAGTTGTTGGA+TGG	0.569777	1.2:+41835720	None:intergenic
CATCACCTTCTTATCCAACA+TGG	0.575046	1.2:-41835769	MS.gene068582:CDS
TGGTGATGATGGTAGAGATG+TGG	0.592964	1.2:+41835848	None:intergenic
GGTGATGATGATAATGATGA+TGG	0.595521	1.2:+41835785	None:intergenic
GATGATGTGAATCTATAAAG+AGG	0.609056	1.2:+41835812	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	ACAACATCTTCAATCAACTA+TGG	-	chr1.2:41835825-41835844	MS.gene068582:CDS	30.0%
	GATGATGTGAATCTATAAAG+AGG	+	chr1.2:41835910-41835929	None:intergenic	30.0%
	TCTCAACAACAACCTATTAA+TGG	-	chr1.2:41836021-41836040	MS.gene068582:CDS	30.0%
	AGTAAGAAGAAGTTGTTGGA+TGG	+	chr1.2:41836002-41836021	None:intergenic	35.0%
	TGAGAGTAAGAAGAAGTTGT+TGG	+	chr1.2:41836006-41836025	None:intergenic	35.0%
!	GGTGATGATGATAATGATGA+TGG	+	chr1.2:41835937-41835956	None:intergenic	35.0%
	AAAGAGGATGCTGTTGTTGA+TGG	+	chr1.2:41835894-41835913	None:intergenic	40.0%
	CATCACCTTCTTATCCAACA+TGG	-	chr1.2:41835950-41835969	MS.gene068582:CDS	40.0%
	CATGGAACACAAACTCAACT+AGG	-	chr1.2:41835968-41835987	MS.gene068582:CDS	40.0%
	GTGTTCCATGTTGGATAAGA+AGG	+	chr1.2:41835958-41835977	None:intergenic	40.0%
	GTTGAGTTTGTGTTCCATGT+TGG	+	chr1.2:41835967-41835986	None:intergenic	40.0%
	TTTCCTACTTCACAAGCCTT+AGG	-	chr1.2:41835757-41835776	MS.gene068582:CDS	40.0%
!!	GCTGTTGTTGATGGTGATGA+TGG	+	chr1.2:41835885-41835904	None:intergenic	45.0%
!!	TGCGTTTTGATGACCACCTA+AGG	+	chr1.2:41835776-41835795	None:intergenic	45.0%
!!	TGGTGATGATGGTAGAGATG+TGG	+	chr1.2:41835874-41835893	None:intergenic	45.0%
	CCACCTAAGGCTTGTGAAGT+AGG	+	chr1.2:41835763-41835782	None:intergenic	50.0%
	CCTACTTCACAAGCCTTAGG+TGG	-	chr1.2:41835760-41835779	MS.gene068582:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	41835696	41836045	41835696	ID=MS.gene068582
chr1.2	mRNA	41835696	41836045	41835696	ID=MS.gene068582.t1;Parent=MS.gene068582
chr1.2	exon	41835696	41836045	41835696	ID=MS.gene068582.t1.exon1;Parent=MS.gene068582.t1
chr1.2	CDS	41835696	41836045	41835696	ID=cds.MS.gene068582.t1;Parent=MS.gene068582.t1

Gene Sequence	>MS.gene068582 AGACAACAACAATAACAACGAAAACAACAGAAGATTTGAATGTCATTACTGTTGTAGAAACTTTCCTACTTCACAAGCCTTAGGTGGTCATCAAAACGCACACAAAAGAGAACGTCAACACGCAAAACGACAACATCTTCAATCAACTATGGTACATGCTACTACTTTCTCTGATCCACATCTCTACCATCATCACCATCAACAACAGCATCCTCTTTATAGATTCACATCATCATCACCATCATCATTATCATCATCACCTTCTTATCCAACATGGAACACAAACTCAACTAGGTTCTATAACCATCCAACAACTTCTTCTTACTCTCAACAACAACCTATTAATGGTA
Protein sequence	>MS.gene068582.t1 RQQQUQRKQQKIUMSLLLUKLSYFTSLRWSSKRTQKRTSTRKTTTSSINYGTCYYFLUSTSLPSSPSTTASSLUIHIIITIIIIIITFLSNMEHKLNUVLUPSNNFFLLSTTTYUW

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