Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06964.t1 | XP_003625896.1 | 99.1 | 320 | 3 | 0 | 1 | 320 | 1 | 320 | 1.10E-182 | 649 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06964.t1 | Q9LMU0 | 83.5 | 315 | 52 | 0 | 6 | 320 | 11 | 325 | 4.0e-157 | 555.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06964.t1 | G7KRU3 | 99.1 | 320 | 3 | 0 | 1 | 320 | 1 | 320 | 8.0e-183 | 649.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015787 | MS.gene06964 | PPI |
| MS.gene06964 | MS.gene049084 | PPI |
| MS.gene06964 | MS.gene43111 | PPI |
| MS.gene062351 | MS.gene06964 | PPI |
| MS.gene20783 | MS.gene06964 | PPI |
| MS.gene06964 | MS.gene07262 | PPI |
| MS.gene56125 | MS.gene06964 | PPI |
| MS.gene06964 | MS.gene05958 | PPI |
| MS.gene030057 | MS.gene06964 | PPI |
| MS.gene92492 | MS.gene06964 | PPI |
| MS.gene06964 | MS.gene20834 | PPI |
| MS.gene06964 | MS.gene061388 | PPI |
| MS.gene05880 | MS.gene06964 | PPI |
| MS.gene017129 | MS.gene06964 | PPI |
| MS.gene038363 | MS.gene06964 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06964.t1 | MTR_7g108490 | 99.062 | 320 | 3 | 0 | 1 | 320 | 1 | 320 | 0.0 | 657 |
| MS.gene06964.t1 | MTR_7g108490 | 99.062 | 320 | 2 | 1 | 1 | 320 | 1 | 319 | 0.0 | 653 |
| MS.gene06964.t1 | MTR_1g080950 | 24.242 | 330 | 223 | 8 | 9 | 320 | 22 | 342 | 2.47e-21 | 93.6 |
| MS.gene06964.t1 | MTR_1g080950 | 24.242 | 330 | 223 | 8 | 9 | 320 | 58 | 378 | 2.91e-21 | 94.0 |
| MS.gene06964.t1 | MTR_7g115080 | 24.383 | 324 | 215 | 9 | 16 | 320 | 30 | 342 | 1.24e-19 | 89.0 |
| MS.gene06964.t1 | MTR_7g115080 | 24.383 | 324 | 215 | 9 | 16 | 320 | 64 | 376 | 1.39e-19 | 89.0 |
| MS.gene06964.t1 | MTR_7g115080 | 24.383 | 324 | 215 | 9 | 16 | 320 | 43 | 355 | 1.51e-19 | 88.6 |
| MS.gene06964.t1 | MTR_1g009600 | 28.649 | 185 | 116 | 6 | 137 | 317 | 148 | 320 | 1.02e-12 | 68.9 |
| MS.gene06964.t1 | MTR_4g063600 | 24.051 | 316 | 208 | 9 | 10 | 307 | 27 | 328 | 1.99e-12 | 67.4 |
| MS.gene06964.t1 | MTR_4g063600 | 23.418 | 316 | 207 | 9 | 10 | 307 | 27 | 325 | 1.24e-11 | 65.1 |
| MS.gene06964.t1 | MTR_5g009160 | 24.340 | 341 | 210 | 11 | 17 | 317 | 6 | 338 | 4.37e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06964.t1 | AT1G17890 | 83.492 | 315 | 52 | 0 | 6 | 320 | 11 | 325 | 0.0 | 563 |
| MS.gene06964.t1 | AT1G17890 | 83.492 | 315 | 52 | 0 | 6 | 320 | 3 | 317 | 0.0 | 563 |
| MS.gene06964.t1 | AT1G17890 | 83.492 | 315 | 52 | 0 | 6 | 320 | 3 | 317 | 0.0 | 563 |
| MS.gene06964.t1 | AT1G73250 | 83.819 | 309 | 50 | 0 | 10 | 318 | 12 | 320 | 0.0 | 558 |
| MS.gene06964.t1 | AT5G28840 | 23.939 | 330 | 224 | 8 | 9 | 320 | 22 | 342 | 3.50e-20 | 90.5 |
| MS.gene06964.t1 | AT5G28840 | 23.939 | 330 | 224 | 8 | 9 | 320 | 22 | 342 | 3.50e-20 | 90.5 |
| MS.gene06964.t1 | AT3G14790 | 29.282 | 181 | 114 | 7 | 140 | 317 | 153 | 322 | 1.83e-14 | 74.3 |
| MS.gene06964.t1 | AT3G14790 | 29.282 | 181 | 114 | 7 | 140 | 317 | 156 | 325 | 1.88e-14 | 74.3 |
| MS.gene06964.t1 | AT2G28760 | 24.367 | 316 | 207 | 9 | 10 | 307 | 26 | 327 | 4.31e-13 | 69.3 |
| MS.gene06964.t1 | AT2G28760 | 24.367 | 316 | 207 | 9 | 10 | 307 | 26 | 327 | 4.31e-13 | 69.3 |
| MS.gene06964.t1 | AT2G28760 | 24.367 | 316 | 207 | 9 | 10 | 307 | 26 | 327 | 4.31e-13 | 69.3 |
| MS.gene06964.t1 | AT3G46440 | 24.214 | 318 | 205 | 10 | 10 | 307 | 24 | 325 | 5.38e-13 | 69.3 |
| MS.gene06964.t1 | AT3G46440 | 24.214 | 318 | 205 | 10 | 10 | 307 | 24 | 325 | 5.38e-13 | 69.3 |
| MS.gene06964.t1 | AT2G28760 | 24.367 | 316 | 207 | 9 | 10 | 307 | 57 | 358 | 5.51e-13 | 69.3 |
| MS.gene06964.t1 | AT1G53500 | 27.778 | 180 | 118 | 5 | 140 | 317 | 155 | 324 | 1.89e-12 | 68.6 |
| MS.gene06964.t1 | AT3G53520 | 26.282 | 312 | 199 | 11 | 13 | 307 | 118 | 415 | 1.12e-11 | 65.9 |
| MS.gene06964.t1 | AT1G64440 | 22.093 | 344 | 218 | 11 | 15 | 317 | 3 | 337 | 2.80e-11 | 63.9 |
Find 92 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGAAGATGCTTTGCTTAC+TGG | 0.149882 | 7.1:-5303189 | MS.gene06964:CDS |
| ATTGGTTGAGGTGCAAATTT+AGG | 0.159427 | 7.1:+5303213 | None:intergenic |
| GAGCTATCCATCAGCTTTCT+TGG | 0.194906 | 7.1:+5302733 | None:intergenic |
| CACAAGTGGGATGCAATTTC+AGG | 0.203663 | 7.1:-5303087 | MS.gene06964:CDS |
| AACAATAACCCTTACTGTTT+TGG | 0.240454 | 7.1:+5304276 | None:intergenic |
| CCATTCATTTGTGGGCTCTA+AGG | 0.251483 | 7.1:+5303164 | None:intergenic |
| ATTCTCTAAGTACCACTTAT+AGG | 0.298342 | 7.1:+5302651 | None:intergenic |
| GAGGTAGTGGTGTGGGGTAC+GGG | 0.306076 | 7.1:-5302955 | MS.gene06964:CDS |
| CCAGTAAGCAAAGCATCTTC+AGG | 0.327068 | 7.1:+5303189 | None:intergenic |
| TGGAAAGGAGGTTACAATTA+AGG | 0.329079 | 7.1:-5302833 | MS.gene06964:CDS |
| GGAGGTTACAATTAAGGAAT+TGG | 0.338695 | 7.1:-5302827 | MS.gene06964:CDS |
| GGGATGCCGACCAACTTATA+CGG | 0.369504 | 7.1:-5303066 | MS.gene06964:CDS |
| TTGGTTGAGGTGCAAATTTA+GGG | 0.370655 | 7.1:+5303214 | None:intergenic |
| CATTCATTTGTGGGCTCTAA+GGG | 0.394688 | 7.1:+5303165 | None:intergenic |
| CAATGACATTGGTCTGGATC+TGG | 0.398176 | 7.1:+5303295 | None:intergenic |
| AGCTTTCTTGGTGTCCCATC+GGG | 0.401801 | 7.1:+5302745 | None:intergenic |
| AGGTAGTGGTGTGGGGTACG+GGG | 0.403323 | 7.1:-5302954 | MS.gene06964:CDS |
| GGAGGTAGTGGTGTGGGGTA+CGG | 0.416144 | 7.1:-5302956 | MS.gene06964:CDS |
| TCGGGATGGAAATTATCATT+TGG | 0.418888 | 7.1:+5303042 | None:intergenic |
| TCCGGTCATCGAGGTCTTGT+TGG | 0.420739 | 7.1:-5303522 | MS.gene06964:CDS |
| AGCTCAAAACTTGCAGCCCT+TGG | 0.432660 | 7.1:-5302715 | MS.gene06964:CDS |
| TATGCCATTGCCAAGATTGC+CGG | 0.438517 | 7.1:-5303141 | MS.gene06964:CDS |
| CAGCTTTCTTGGTGTCCCAT+CGG | 0.440823 | 7.1:+5302744 | None:intergenic |
| GGAGTTGAGCATTTGAATGT+AGG | 0.457314 | 7.1:-5302859 | MS.gene06964:CDS |
| GGGTACGGGGAGTCCACTTA+GGG | 0.460892 | 7.1:-5302941 | MS.gene06964:CDS |
| TGCAAAGGAGGTAGTGGTGT+GGG | 0.465275 | 7.1:-5302962 | MS.gene06964:CDS |
| TCATCGAGGTCTTGTTGGTT+CGG | 0.467475 | 7.1:-5303517 | MS.gene06964:CDS |
| ACCAACAAGACCTCGATGAC+CGG | 0.471640 | 7.1:+5303521 | None:intergenic |
| GGCATGGATACCACCAACTT+TGG | 0.472668 | 7.1:+5303356 | None:intergenic |
| AGCAAAGCATCTTCAGGGAT+TGG | 0.474197 | 7.1:+5303195 | None:intergenic |
| GGGGTACGGGGAGTCCACTT+AGG | 0.476642 | 7.1:-5302942 | MS.gene06964:CDS |
| CAGAATCAATGACATTGGTC+TGG | 0.477646 | 7.1:+5303289 | None:intergenic |
| AGGCTTCGTGGATGCAAAGA+AGG | 0.478791 | 7.1:+5303401 | None:intergenic |
| GAGTTGAGCATTTGAATGTA+GGG | 0.483402 | 7.1:-5302858 | MS.gene06964:CDS |
| ATCATTTGGTCCGTATAAGT+TGG | 0.484602 | 7.1:+5303056 | None:intergenic |
| ATGGCATACCATTCATTTGT+GGG | 0.486092 | 7.1:+5303156 | None:intergenic |
| CAAAACTTGCAGCCCTTGGT+TGG | 0.488475 | 7.1:-5302711 | MS.gene06964:CDS |
| ATCAGCAGGATAGGTGTTGT+TGG | 0.496759 | 7.1:+5303335 | None:intergenic |
| AATGACAAACTCAGGCTTCG+TGG | 0.498096 | 7.1:+5303389 | None:intergenic |
| GCATCTTCAGGGATTGGTTG+AGG | 0.503925 | 7.1:+5303201 | None:intergenic |
| ATGCCATTGCCAAGATTGCC+GGG | 0.506721 | 7.1:-5303140 | MS.gene06964:CDS |
| GAATGTAGGGAGTGGAAAGG+AGG | 0.511105 | 7.1:-5302845 | MS.gene06964:CDS |
| CCATCCTTAAGTGAGACTTT+CGG | 0.511365 | 7.1:+5302685 | None:intergenic |
| GTTCGCAAGCTGACTCAACT+CGG | 0.514389 | 7.1:-5303489 | MS.gene06964:CDS |
| CAGGATAGGTGTTGTTGGCA+TGG | 0.526132 | 7.1:+5303340 | None:intergenic |
| ACAAGTGGGATGCAATTTCA+GGG | 0.528356 | 7.1:-5303086 | MS.gene06964:CDS |
| CCTTAGAGCCCACAAATGAA+TGG | 0.530586 | 7.1:-5303164 | MS.gene06964:CDS |
| ATTGTAGCTGCTGCCAAAGT+TGG | 0.538288 | 7.1:-5303369 | MS.gene06964:CDS |
| GATCCCGGCAATCTTGGCAA+TGG | 0.538775 | 7.1:+5303137 | None:intergenic |
| GGTCTGGATCTGGAGGTTGA+TGG | 0.540673 | 7.1:+5303305 | None:intergenic |
| CCGAAAGTCTCACTTAAGGA+TGG | 0.543510 | 7.1:-5302685 | MS.gene06964:CDS |
| TGAAACCTCCTCATCAAAGC+AGG | 0.544927 | 7.1:+5303003 | None:intergenic |
| CAACGGTGCAAAGGAGGTAG+TGG | 0.546785 | 7.1:-5302968 | MS.gene06964:CDS |
| CAGTAAGCAAAGCATCTTCA+GGG | 0.549758 | 7.1:+5303190 | None:intergenic |
| GAGTCAATGAAGGAAGTTGT+GGG | 0.556089 | 7.1:-5302802 | MS.gene06964:CDS |
| TTGATGGCAATGAAATCAGC+AGG | 0.556836 | 7.1:+5303321 | None:intergenic |
| GGAATTGGCTGAGTCAATGA+AGG | 0.558355 | 7.1:-5302812 | MS.gene06964:CDS |
| TTCGCAAGCTGACTCAACTC+GGG | 0.561081 | 7.1:-5303488 | MS.gene06964:CDS |
| AATGGCATACCATTCATTTG+TGG | 0.562972 | 7.1:+5303155 | None:intergenic |
| AGATGCAGTTGTCTTTATGA+TGG | 0.567147 | 7.1:-5302893 | MS.gene06964:CDS |
| GACACCGAAAGTCTCACTTA+AGG | 0.568664 | 7.1:-5302689 | MS.gene06964:CDS |
| GGCAATGAAATCAGCAGGAT+AGG | 0.569157 | 7.1:+5303326 | None:intergenic |
| TGGGACACCAAGAAAGCTGA+TGG | 0.571175 | 7.1:-5302740 | MS.gene06964:CDS |
| GAGCATTTGAATGTAGGGAG+TGG | 0.573638 | 7.1:-5302853 | MS.gene06964:CDS |
| GTAGCTGCTGCCAAAGTTGG+TGG | 0.582192 | 7.1:-5303366 | MS.gene06964:CDS |
| ATTGATTCTGCTTATCGCAA+TGG | 0.583179 | 7.1:-5303276 | MS.gene06964:CDS |
| GAGGAGGTTTCATGAGGCAA+AGG | 0.584336 | 7.1:-5302992 | MS.gene06964:CDS |
| TTGAGTCAGCTTGCGAACAA+TGG | 0.584587 | 7.1:+5303494 | None:intergenic |
| CATACAGAATTCAGCACAAG+TGG | 0.592816 | 7.1:-5303101 | MS.gene06964:CDS |
| CGAAAGTCTCACTTAAGGAT+GGG | 0.593671 | 7.1:-5302684 | MS.gene06964:CDS |
| GCAGCTACAATGACAAACTC+AGG | 0.596147 | 7.1:+5303381 | None:intergenic |
| GCAAAGGAGGTAGTGGTGTG+GGG | 0.596327 | 7.1:-5302961 | MS.gene06964:CDS |
| TTTGGTCCGTATAAGTTGGT+CGG | 0.596979 | 7.1:+5303060 | None:intergenic |
| GACTTTCGGTGTCCAACCAA+GGG | 0.600503 | 7.1:+5302699 | None:intergenic |
| GGCAAAGGTCAACGGTGCAA+AGG | 0.605297 | 7.1:-5302977 | MS.gene06964:CDS |
| TTTCATGAGGCAAAGGTCAA+CGG | 0.606919 | 7.1:-5302985 | MS.gene06964:CDS |
| AGACTTTCGGTGTCCAACCA+AGG | 0.607421 | 7.1:+5302698 | None:intergenic |
| ATAAGCAGAATCAATGACAT+TGG | 0.607720 | 7.1:+5303284 | None:intergenic |
| TGGGATAGTACTAAGCCCGA+TGG | 0.610894 | 7.1:-5302760 | MS.gene06964:CDS |
| GTGCAAAGGAGGTAGTGGTG+TGG | 0.615768 | 7.1:-5302963 | MS.gene06964:CDS |
| GGCTTGTTGATACCTATAAG+TGG | 0.616689 | 7.1:-5302663 | MS.gene06964:CDS |
| TTTGAATGTAGGGAGTGGAA+AGG | 0.619261 | 7.1:-5302848 | MS.gene06964:CDS |
| AAAGGTCAACGGTGCAAAGG+AGG | 0.620001 | 7.1:-5302974 | MS.gene06964:CDS |
| TCTAATCTTAAGAACTCATG+CGG | 0.625073 | 7.1:-5303457 | MS.gene06964:CDS |
| TTTGATGAGGAGGTTTCATG+AGG | 0.636802 | 7.1:-5302998 | MS.gene06964:CDS |
| GGGATAGTACTAAGCCCGAT+GGG | 0.640020 | 7.1:-5302759 | MS.gene06964:CDS |
| AAATTTAGGGTAAATGCAAG+AGG | 0.655370 | 7.1:+5303227 | None:intergenic |
| TGACATTGGTCTGGATCTGG+AGG | 0.655686 | 7.1:+5303298 | None:intergenic |
| TGAGTCAATGAAGGAAGTTG+TGG | 0.655904 | 7.1:-5302803 | MS.gene06964:CDS |
| ATTCATTTGTGGGCTCTAAG+GGG | 0.661471 | 7.1:+5303166 | None:intergenic |
| TTTATGATGGAAAAGTACAG+TGG | 0.685676 | 7.1:-5302880 | MS.gene06964:CDS |
| ATACAGAATTCAGCACAAGT+GGG | 0.695878 | 7.1:-5303100 | MS.gene06964:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTCTCAAATTACTAC+CGG | - | chr7.1:5302863-5302882 | MS.gene06964:CDS | 20.0% |
| ! | AACATTTAATGTGATCACAT+TGG | + | chr7.1:5302845-5302864 | None:intergenic | 25.0% |
| ! | TGGTTTAATATGGTATCAAT+AGG | - | chr7.1:5303057-5303076 | MS.gene06964:CDS | 25.0% |
| !! | AATTTTACTAGATTCAAAGG+TGG | - | chr7.1:5303173-5303192 | MS.gene06964:CDS | 25.0% |
| !! | CAGAATTTTACTAGATTCAA+AGG | - | chr7.1:5303170-5303189 | MS.gene06964:CDS | 25.0% |
| !!! | CATTTGCTTTTGGTTTAATA+TGG | - | chr7.1:5303047-5303066 | MS.gene06964:CDS | 25.0% |
| !!! | GGTGAGAGAATTATTTTTAT+TGG | - | chr7.1:5303283-5303302 | MS.gene06964:CDS | 25.0% |
| ATAACAATGCTAACTCATTC+TGG | - | chr7.1:5303229-5303248 | MS.gene06964:CDS | 30.0% | |
| ATAAGCAGAATCAATGACAT+TGG | + | chr7.1:5303642-5303661 | None:intergenic | 30.0% | |
| ATTCTCTAAGTACCACTTAT+AGG | + | chr7.1:5304275-5304294 | None:intergenic | 30.0% | |
| TCTAATCTTAAGAACTCATG+CGG | - | chr7.1:5303466-5303485 | MS.gene06964:CDS | 30.0% | |
| ! | AAATTTAGGGTAAATGCAAG+AGG | + | chr7.1:5303699-5303718 | None:intergenic | 30.0% |
| ! | AACAATAACCCTTACTGTTT+TGG | + | chr7.1:5302650-5302669 | None:intergenic | 30.0% |
| ! | ATGTCTTTGATCAAAAGTGT+CGG | + | chr7.1:5302802-5302821 | None:intergenic | 30.0% |
| ! | TTTATGATGGAAAAGTACAG+TGG | - | chr7.1:5304043-5304062 | MS.gene06964:intron | 30.0% |
| !! | TTAGCATTGTTATTGACTCT+TGG | + | chr7.1:5303222-5303241 | None:intergenic | 30.0% |
| !! | TTTTGATGATAAATCTGCCA+AGG | - | chr7.1:5303370-5303389 | MS.gene06964:CDS | 30.0% |
| !!! | GCTAAGAAGCTTTTGTTTTT+GGG | - | chr7.1:5303671-5303690 | MS.gene06964:intron | 30.0% |
| !!! | TGCTAAGAAGCTTTTGTTTT+TGG | - | chr7.1:5303670-5303689 | MS.gene06964:intron | 30.0% |
| AAAGATAGCGTAGTTCGTAT+AGG | + | chr7.1:5303137-5303156 | None:intergenic | 35.0% | |
| AATGGCATACCATTCATTTG+TGG | + | chr7.1:5303771-5303790 | None:intergenic | 35.0% | |
| ACCAAAAGCAAATGAACTCA+AGG | + | chr7.1:5303041-5303060 | None:intergenic | 35.0% | |
| AGATGCAGTTGTCTTTATGA+TGG | - | chr7.1:5304030-5304049 | MS.gene06964:intron | 35.0% | |
| ATACAGAATTCAGCACAAGT+GGG | - | chr7.1:5303823-5303842 | MS.gene06964:intron | 35.0% | |
| ATCATTTGGTCCGTATAAGT+TGG | + | chr7.1:5303870-5303889 | None:intergenic | 35.0% | |
| ATGGCATACCATTCATTTGT+GGG | + | chr7.1:5303770-5303789 | None:intergenic | 35.0% | |
| ATTGGTTGAGGTGCAAATTT+AGG | + | chr7.1:5303713-5303732 | None:intergenic | 35.0% | |
| CCAAAAGCAAATGAACTCAA+GGG | + | chr7.1:5303040-5303059 | None:intergenic | 35.0% | |
| GAGTTGAGCATTTGAATGTA+GGG | - | chr7.1:5304065-5304084 | MS.gene06964:intron | 35.0% | |
| GGAGGTTACAATTAAGGAAT+TGG | - | chr7.1:5304096-5304115 | MS.gene06964:intron | 35.0% | |
| TATAATCAGGACCTACAAAC+TGG | + | chr7.1:5303096-5303115 | None:intergenic | 35.0% | |
| TCGAAAAAAACGCTCAATTG+CGG | + | chr7.1:5302979-5302998 | None:intergenic | 35.0% | |
| TCGGGATGGAAATTATCATT+TGG | + | chr7.1:5303884-5303903 | None:intergenic | 35.0% | |
| TGCCCTAAAAAAAGAAGAGA+GGG | - | chr7.1:5303262-5303281 | MS.gene06964:CDS | 35.0% | |
| TGGAAAGGAGGTTACAATTA+AGG | - | chr7.1:5304090-5304109 | MS.gene06964:intron | 35.0% | |
| TTGCCCTAAAAAAAGAAGAG+AGG | - | chr7.1:5303261-5303280 | MS.gene06964:CDS | 35.0% | |
| TTGGTTGAGGTGCAAATTTA+GGG | + | chr7.1:5303712-5303731 | None:intergenic | 35.0% | |
| ! | AGGCAAAACGTGTGAATTTT+CGG | + | chr7.1:5303903-5303922 | None:intergenic | 35.0% |
| ! | ATTGATTCTGCTTATCGCAA+TGG | - | chr7.1:5303647-5303666 | MS.gene06964:intron | 35.0% |
| !!! | CACCCTCTCTTCTTTTTTTA+GGG | + | chr7.1:5303267-5303286 | None:intergenic | 35.0% |
| !!! | TAGCTGTTTTTCCAGTTTGT+AGG | - | chr7.1:5303082-5303101 | MS.gene06964:CDS | 35.0% |
| !!! | TCACCCTCTCTTCTTTTTTT+AGG | + | chr7.1:5303268-5303287 | None:intergenic | 35.0% |
| ACAAGTGGGATGCAATTTCA+GGG | - | chr7.1:5303837-5303856 | MS.gene06964:intron | 40.0% | |
| ATGACCGGAAACAAAAACCT+TGG | + | chr7.1:5303390-5303409 | None:intergenic | 40.0% | |
| ATGGGAAGCCAAAACAGTAA+GGG | - | chr7.1:5302639-5302658 | MS.gene06964:CDS | 40.0% | |
| CAGAATCAATGACATTGGTC+TGG | + | chr7.1:5303637-5303656 | None:intergenic | 40.0% | |
| CATACAGAATTCAGCACAAG+TGG | - | chr7.1:5303822-5303841 | MS.gene06964:intron | 40.0% | |
| CCATCCTTAAGTGAGACTTT+CGG | + | chr7.1:5304241-5304260 | None:intergenic | 40.0% | |
| CGAAAGTCTCACTTAAGGAT+GGG | - | chr7.1:5304239-5304258 | MS.gene06964:intron | 40.0% | |
| CTAAAGCAATCGCTTCTGAA+AGG | - | chr7.1:5302937-5302956 | MS.gene06964:CDS | 40.0% | |
| GAGTCAATGAAGGAAGTTGT+GGG | - | chr7.1:5304121-5304140 | MS.gene06964:intron | 40.0% | |
| GGAGTTGAGCATTTGAATGT+AGG | - | chr7.1:5304064-5304083 | MS.gene06964:intron | 40.0% | |
| GTCAACGAGAGCTTATAATC+AGG | + | chr7.1:5303109-5303128 | None:intergenic | 40.0% | |
| TCTCAAATTACTACCGGTGA+CGG | - | chr7.1:5302869-5302888 | MS.gene06964:CDS | 40.0% | |
| TGAGTCAATGAAGGAAGTTG+TGG | - | chr7.1:5304120-5304139 | MS.gene06964:intron | 40.0% | |
| TTTCATGAGGCAAAGGTCAA+CGG | - | chr7.1:5303938-5303957 | MS.gene06964:intron | 40.0% | |
| TTTGAATGTAGGGAGTGGAA+AGG | - | chr7.1:5304075-5304094 | MS.gene06964:intron | 40.0% | |
| TTTGATGAGGAGGTTTCATG+AGG | - | chr7.1:5303925-5303944 | MS.gene06964:intron | 40.0% | |
| ! | CACATTGGTTGAAGTTGTGT+CGG | + | chr7.1:5302830-5302849 | None:intergenic | 40.0% |
| ! | CAGTAAGCAAAGCATCTTCA+GGG | + | chr7.1:5303736-5303755 | None:intergenic | 40.0% |
| ! | CATTCATTTGTGGGCTCTAA+GGG | + | chr7.1:5303761-5303780 | None:intergenic | 40.0% |
| ! | CCCTTGAGTTCATTTGCTTT+TGG | - | chr7.1:5303037-5303056 | MS.gene06964:CDS | 40.0% |
| ! | GGCAAAACGTGTGAATTTTC+GGG | + | chr7.1:5303902-5303921 | None:intergenic | 40.0% |
| ! | GTTTTTGCACGTTGACGATT+TGG | - | chr7.1:5304006-5304025 | MS.gene06964:intron | 40.0% |
| ! | TTGATGGCAATGAAATCAGC+AGG | + | chr7.1:5303605-5303624 | None:intergenic | 40.0% |
| !! | AAACGTGTGAATTTTCGGGA+TGG | + | chr7.1:5303898-5303917 | None:intergenic | 40.0% |
| !! | AAGGAAGTTGTGGGTTTTGA+AGG | - | chr7.1:5304130-5304149 | MS.gene06964:intron | 40.0% |
| !! | ATTCATTTGTGGGCTCTAAG+GGG | + | chr7.1:5303760-5303779 | None:intergenic | 40.0% |
| !! | GGCTTGTTGATACCTATAAG+TGG | - | chr7.1:5304260-5304279 | MS.gene06964:intron | 40.0% |
| !! | TCTGCCAAGGTTTTTGTTTC+CGG | - | chr7.1:5303383-5303402 | MS.gene06964:CDS | 40.0% |
| !! | TGCTTGACACATTTTGATCC+CGG | + | chr7.1:5303804-5303823 | None:intergenic | 40.0% |
| !! | TTTGGTCCGTATAAGTTGGT+CGG | + | chr7.1:5303866-5303885 | None:intergenic | 40.0% |
| !! | TTTTGAAGGCGATCTCGTTT+GGG | - | chr7.1:5304144-5304163 | MS.gene06964:intron | 40.0% |
| AATGAACTCAAGGGCTACCT+CGG | + | chr7.1:5303031-5303050 | None:intergenic | 45.0% | |
| AATGACAAACTCAGGCTTCG+TGG | + | chr7.1:5303537-5303556 | None:intergenic | 45.0% | |
| ACGTGCAAAAACTCCCTAAG+TGG | + | chr7.1:5303998-5304017 | None:intergenic | 45.0% | |
| AGCGTAGTTCGTATAGGTTG+TGG | + | chr7.1:5303131-5303150 | None:intergenic | 45.0% | |
| ATTGTAGCTGCTGCCAAAGT+TGG | - | chr7.1:5303554-5303573 | MS.gene06964:CDS | 45.0% | |
| CACAAGTGGGATGCAATTTC+AGG | - | chr7.1:5303836-5303855 | MS.gene06964:intron | 45.0% | |
| CCATTCATTTGTGGGCTCTA+AGG | + | chr7.1:5303762-5303781 | None:intergenic | 45.0% | |
| CCGAAAGTCTCACTTAAGGA+TGG | - | chr7.1:5304238-5304257 | MS.gene06964:intron | 45.0% | |
| CCTGAAGATGCTTTGCTTAC+TGG | - | chr7.1:5303734-5303753 | MS.gene06964:intron | 45.0% | |
| CCTTAGAGCCCACAAATGAA+TGG | - | chr7.1:5303759-5303778 | MS.gene06964:intron | 45.0% | |
| GACACCGAAAGTCTCACTTA+AGG | - | chr7.1:5304234-5304253 | MS.gene06964:intron | 45.0% | |
| GAGCATTTGAATGTAGGGAG+TGG | - | chr7.1:5304070-5304089 | MS.gene06964:intron | 45.0% | |
| GAGCTATCCATCAGCTTTCT+TGG | + | chr7.1:5304193-5304212 | None:intergenic | 45.0% | |
| GCAGCTACAATGACAAACTC+AGG | + | chr7.1:5303545-5303564 | None:intergenic | 45.0% | |
| GGAATTGGCTGAGTCAATGA+AGG | - | chr7.1:5304111-5304130 | MS.gene06964:intron | 45.0% | |
| GGCAATGAAATCAGCAGGAT+AGG | + | chr7.1:5303600-5303619 | None:intergenic | 45.0% | |
| TATGCCATTGCCAAGATTGC+CGG | - | chr7.1:5303782-5303801 | MS.gene06964:intron | 45.0% | |
| TCGTGTCTGTGTTTGGTTGA+TGG | - | chr7.1:5302908-5302927 | MS.gene06964:CDS | 45.0% | |
| TGAAACCTCCTCATCAAAGC+AGG | + | chr7.1:5303923-5303942 | None:intergenic | 45.0% | |
| TTGAGTCAGCTTGCGAACAA+TGG | + | chr7.1:5303432-5303451 | None:intergenic | 45.0% | |
| ! | ACGTTTTGCCTGCTTTGATG+AGG | - | chr7.1:5303912-5303931 | MS.gene06964:intron | 45.0% |
| ! | AGCAAAGCATCTTCAGGGAT+TGG | + | chr7.1:5303731-5303750 | None:intergenic | 45.0% |
| ! | ATCAGCAGGATAGGTGTTGT+TGG | + | chr7.1:5303591-5303610 | None:intergenic | 45.0% |
| ! | CAATGACATTGGTCTGGATC+TGG | + | chr7.1:5303631-5303650 | None:intergenic | 45.0% |
| ! | CCAGTAAGCAAAGCATCTTC+AGG | + | chr7.1:5303737-5303756 | None:intergenic | 45.0% |
| ! | TTTTGCCTGCTTTGATGAGG+AGG | - | chr7.1:5303915-5303934 | MS.gene06964:intron | 45.0% |
| !! | CATTTTGATCCCGGCAATCT+TGG | + | chr7.1:5303795-5303814 | None:intergenic | 45.0% |
| !! | GATCAAAAGTGTCGGTGCTA+TGG | + | chr7.1:5302794-5302813 | None:intergenic | 45.0% |
| !! | GTTTTTGTTTCCGGTCATCG+AGG | - | chr7.1:5303392-5303411 | MS.gene06964:CDS | 45.0% |
| !! | TCATCGAGGTCTTGTTGGTT+CGG | - | chr7.1:5303406-5303425 | MS.gene06964:CDS | 45.0% |
| !!! | GTTTTGAAGGCGATCTCGTT+TGG | - | chr7.1:5304143-5304162 | MS.gene06964:intron | 45.0% |
| AAAGGTCAACGGTGCAAAGG+AGG | - | chr7.1:5303949-5303968 | MS.gene06964:intron | 50.0% | |
| ACACAATGTCTCACTCTCCG+AGG | - | chr7.1:5303011-5303030 | MS.gene06964:CDS | 50.0% | |
| ACCAAACACAGACACGACAC+TGG | + | chr7.1:5302905-5302924 | None:intergenic | 50.0% | |
| ACCAACAAGACCTCGATGAC+CGG | + | chr7.1:5303405-5303424 | None:intergenic | 50.0% | |
| AGCTCAAAACTTGCAGCCCT+TGG | - | chr7.1:5304208-5304227 | MS.gene06964:intron | 50.0% | |
| AGGCTTCGTGGATGCAAAGA+AGG | + | chr7.1:5303525-5303544 | None:intergenic | 50.0% | |
| ATGCCATTGCCAAGATTGCC+GGG | - | chr7.1:5303783-5303802 | MS.gene06964:intron | 50.0% | |
| CAAAACTTGCAGCCCTTGGT+TGG | - | chr7.1:5304212-5304231 | MS.gene06964:intron | 50.0% | |
| GAATGTAGGGAGTGGAAAGG+AGG | - | chr7.1:5304078-5304097 | MS.gene06964:intron | 50.0% | |
| GAGGAGGTTTCATGAGGCAA+AGG | - | chr7.1:5303931-5303950 | MS.gene06964:intron | 50.0% | |
| GGCATGGATACCACCAACTT+TGG | + | chr7.1:5303570-5303589 | None:intergenic | 50.0% | |
| GGGATAGTACTAAGCCCGAT+GGG | - | chr7.1:5304164-5304183 | MS.gene06964:intron | 50.0% | |
| GGGATGCCGACCAACTTATA+CGG | - | chr7.1:5303857-5303876 | MS.gene06964:intron | 50.0% | |
| TGGGACACCAAGAAAGCTGA+TGG | - | chr7.1:5304183-5304202 | MS.gene06964:intron | 50.0% | |
| TGGGATAGTACTAAGCCCGA+TGG | - | chr7.1:5304163-5304182 | MS.gene06964:intron | 50.0% | |
| ! | GTTCGCAAGCTGACTCAACT+CGG | - | chr7.1:5303434-5303453 | MS.gene06964:CDS | 50.0% |
| ! | TGACATTGGTCTGGATCTGG+AGG | + | chr7.1:5303628-5303647 | None:intergenic | 50.0% |
| ! | TGCAAAGGAGGTAGTGGTGT+GGG | - | chr7.1:5303961-5303980 | MS.gene06964:intron | 50.0% |
| ! | TTCGCAAGCTGACTCAACTC+GGG | - | chr7.1:5303435-5303454 | MS.gene06964:CDS | 50.0% |
| !! | AGACTTTCGGTGTCCAACCA+AGG | + | chr7.1:5304228-5304247 | None:intergenic | 50.0% |
| !! | AGCTTTCTTGGTGTCCCATC+GGG | + | chr7.1:5304181-5304200 | None:intergenic | 50.0% |
| !! | CAGCTTTCTTGGTGTCCCAT+CGG | + | chr7.1:5304182-5304201 | None:intergenic | 50.0% |
| !! | CAGGATAGGTGTTGTTGGCA+TGG | + | chr7.1:5303586-5303605 | None:intergenic | 50.0% |
| !! | GACTTTCGGTGTCCAACCAA+GGG | + | chr7.1:5304227-5304246 | None:intergenic | 50.0% |
| !! | GCATCTTCAGGGATTGGTTG+AGG | + | chr7.1:5303725-5303744 | None:intergenic | 50.0% |
| CAACGGTGCAAAGGAGGTAG+TGG | - | chr7.1:5303955-5303974 | MS.gene06964:intron | 55.0% | |
| GATCCCGGCAATCTTGGCAA+TGG | + | chr7.1:5303789-5303808 | None:intergenic | 55.0% | |
| GCCAGTGTCGTGTCTGTGTT+TGG | - | chr7.1:5302901-5302920 | MS.gene06964:CDS | 55.0% | |
| GGCAAAGGTCAACGGTGCAA+AGG | - | chr7.1:5303946-5303965 | MS.gene06964:intron | 55.0% | |
| GGTCTGGATCTGGAGGTTGA+TGG | + | chr7.1:5303621-5303640 | None:intergenic | 55.0% | |
| GTAGCTGCTGCCAAAGTTGG+TGG | - | chr7.1:5303557-5303576 | MS.gene06964:CDS | 55.0% | |
| TGGCACTAACACACCGTCAC+CGG | + | chr7.1:5302885-5302904 | None:intergenic | 55.0% | |
| ! | GCAAAGGAGGTAGTGGTGTG+GGG | - | chr7.1:5303962-5303981 | MS.gene06964:intron | 55.0% |
| ! | GTGCAAAGGAGGTAGTGGTG+TGG | - | chr7.1:5303960-5303979 | MS.gene06964:intron | 55.0% |
| ! | TCCGGTCATCGAGGTCTTGT+TGG | - | chr7.1:5303401-5303420 | MS.gene06964:CDS | 55.0% |
| GGGTACGGGGAGTCCACTTA+GGG | - | chr7.1:5303982-5304001 | MS.gene06964:intron | 60.0% | |
| ! | AGGTAGTGGTGTGGGGTACG+GGG | - | chr7.1:5303969-5303988 | MS.gene06964:intron | 60.0% |
| ! | GAGGTAGTGGTGTGGGGTAC+GGG | - | chr7.1:5303968-5303987 | MS.gene06964:intron | 60.0% |
| ! | GGAGGTAGTGGTGTGGGGTA+CGG | - | chr7.1:5303967-5303986 | MS.gene06964:intron | 60.0% |
| GGGGTACGGGGAGTCCACTT+AGG | - | chr7.1:5303981-5304000 | MS.gene06964:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 5302639 | 5304306 | 5302639 | ID=MS.gene06964 |
| chr7.1 | mRNA | 5302639 | 5304306 | 5302639 | ID=MS.gene06964.t1;Parent=MS.gene06964 |
| chr7.1 | exon | 5304291 | 5304306 | 5304291 | ID=MS.gene06964.t1.exon1;Parent=MS.gene06964.t1 |
| chr7.1 | CDS | 5304291 | 5304306 | 5304291 | ID=cds.MS.gene06964.t1;Parent=MS.gene06964.t1 |
| chr7.1 | exon | 5302639 | 5303585 | 5302639 | ID=MS.gene06964.t1.exon2;Parent=MS.gene06964.t1 |
| chr7.1 | CDS | 5302639 | 5303585 | 5302639 | ID=cds.MS.gene06964.t1;Parent=MS.gene06964.t1 |
| Gene Sequence |
| Protein sequence |
