Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene069718.t1 | XP_013445322.1 | 96 | 399 | 11 | 1 | 1 | 399 | 1 | 394 | 2.80E-207 | 731.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene069718.t1 | Q0WU02 | 73.5 | 378 | 90 | 2 | 19 | 396 | 59 | 426 | 2.5e-156 | 553.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene069718.t1 | A0A072TRA6 | 96.0 | 399 | 11 | 1 | 1 | 399 | 1 | 394 | 2.0e-207 | 731.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene98420 | MS.gene069718 | PPI |
MS.gene78686 | MS.gene069718 | PPI |
MS.gene53865 | MS.gene069718 | PPI |
MS.gene05112 | MS.gene069718 | PPI |
MS.gene92476 | MS.gene069718 | PPI |
MS.gene061402 | MS.gene069718 | PPI |
MS.gene008424 | MS.gene069718 | PPI |
MS.gene049605 | MS.gene069718 | PPI |
MS.gene032465 | MS.gene069718 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene069718.t1 | MTR_8g046550 | 96.241 | 399 | 10 | 1 | 1 | 399 | 1 | 394 | 0.0 | 793 |
MS.gene069718.t1 | MTR_2g064405 | 77.945 | 399 | 74 | 4 | 8 | 399 | 2 | 393 | 0.0 | 610 |
MS.gene069718.t1 | MTR_2g064405 | 85.759 | 316 | 45 | 0 | 84 | 399 | 1 | 316 | 0.0 | 542 |
MS.gene069718.t1 | MTR_3g080090 | 62.982 | 389 | 131 | 2 | 10 | 398 | 23 | 398 | 9.53e-176 | 496 |
MS.gene069718.t1 | MTR_7g022890 | 61.376 | 378 | 133 | 5 | 20 | 395 | 29 | 395 | 3.75e-162 | 461 |
MS.gene069718.t1 | MTR_7g022890 | 65.868 | 334 | 112 | 2 | 63 | 395 | 10 | 342 | 5.85e-161 | 456 |
MS.gene069718.t1 | MTR_3g062610 | 55.589 | 331 | 140 | 4 | 69 | 398 | 72 | 396 | 6.22e-128 | 374 |
MS.gene069718.t1 | MTR_5g075680 | 54.683 | 331 | 143 | 4 | 69 | 398 | 12 | 336 | 1.23e-125 | 366 |
MS.gene069718.t1 | MTR_5g075680 | 54.683 | 331 | 143 | 4 | 69 | 398 | 65 | 389 | 2.90e-125 | 367 |
MS.gene069718.t1 | MTR_3g062610 | 52.137 | 234 | 106 | 3 | 69 | 301 | 72 | 300 | 4.93e-79 | 247 |
MS.gene069718.t1 | MTR_5g075680 | 49.200 | 250 | 120 | 4 | 69 | 317 | 65 | 308 | 3.71e-76 | 239 |
MS.gene069718.t1 | MTR_5g075680 | 46.196 | 184 | 93 | 3 | 69 | 251 | 65 | 243 | 4.84e-47 | 161 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene069718.t1 | AT1G16310 | 73.810 | 378 | 89 | 2 | 19 | 396 | 59 | 426 | 0.0 | 565 |
MS.gene069718.t1 | AT1G79520 | 72.585 | 383 | 98 | 3 | 17 | 399 | 27 | 402 | 0.0 | 556 |
MS.gene069718.t1 | AT1G79520 | 70.483 | 393 | 101 | 3 | 17 | 399 | 27 | 414 | 0.0 | 552 |
MS.gene069718.t1 | AT1G79520 | 77.876 | 339 | 75 | 0 | 61 | 399 | 11 | 349 | 0.0 | 548 |
MS.gene069718.t1 | AT1G79520 | 77.876 | 339 | 75 | 0 | 61 | 399 | 11 | 349 | 0.0 | 548 |
MS.gene069718.t1 | AT1G16310 | 80.192 | 313 | 62 | 0 | 84 | 396 | 1 | 313 | 0.0 | 515 |
MS.gene069718.t1 | AT2G39450 | 60.317 | 378 | 135 | 5 | 20 | 395 | 25 | 389 | 2.81e-140 | 405 |
MS.gene069718.t1 | AT3G58060 | 52.601 | 346 | 158 | 5 | 57 | 398 | 61 | 404 | 2.12e-123 | 363 |
MS.gene069718.t1 | AT3G58060 | 52.601 | 346 | 158 | 5 | 57 | 398 | 61 | 404 | 2.12e-123 | 363 |
MS.gene069718.t1 | AT2G47830 | 22.300 | 287 | 198 | 8 | 120 | 386 | 84 | 365 | 4.34e-11 | 64.7 |
Find 74 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATATTGTGTGCTTGATTTAA+AGG | 0.123675 | 8.4:-54303943 | None:intergenic |
TTCCAATTGGATAGTGAAAA+TGG | 0.205432 | 8.4:-54302418 | None:intergenic |
AACTCACTATGATTCATTTC+AGG | 0.278686 | 8.4:-54302872 | None:intergenic |
TGATTTAAAGGCATGTCTTC+TGG | 0.282313 | 8.4:-54303931 | None:intergenic |
GAAAGTTGACATATCTAATA+TGG | 0.286746 | 8.4:+54303821 | MS.gene069718:CDS |
TGTTGGCTGTCAAGTTCTAT+TGG | 0.308737 | 8.4:+54303047 | MS.gene069718:CDS |
CTGTGAGAGCATACACATTT+GGG | 0.317038 | 8.4:+54303875 | MS.gene069718:CDS |
TTAAATCAAGCACACAATAT+TGG | 0.317732 | 8.4:+54303946 | MS.gene069718:CDS |
ATTACTATACTTACTGTTAC+CGG | 0.327029 | 8.4:-54300010 | None:intergenic |
TCTACCTCGGTAAGACTTCC+TGG | 0.333653 | 8.4:-54301858 | None:intergenic |
TTCCACCCTGGATTCTCTCT+TGG | 0.347562 | 8.4:+54302340 | MS.gene069718:CDS |
TGCATCAGTGATGGCAACTT+TGG | 0.359219 | 8.4:+54302682 | MS.gene069718:CDS |
GTCAACTTTCCTAGAAAATC+AGG | 0.364143 | 8.4:-54303808 | None:intergenic |
TCTCTCTTGGATCTCTTGTC+AGG | 0.366198 | 8.4:+54302353 | MS.gene069718:CDS |
GAGAATGTATCATCTCTAAT+TGG | 0.369305 | 8.4:+54303772 | MS.gene069718:CDS |
CTATGTGCTTAACCTCTTCA+TGG | 0.378933 | 8.4:-54303849 | None:intergenic |
GCATCAGTGATGGCAACTTT+GGG | 0.385511 | 8.4:+54302683 | MS.gene069718:CDS |
TATACCATCATCTTGTGTTC+AGG | 0.390318 | 8.4:-54304051 | None:intergenic |
ACTGTGAGAGCATACACATT+TGG | 0.397157 | 8.4:+54303874 | MS.gene069718:CDS |
ACAAAAGCTCTTTCAACTTC+AGG | 0.412332 | 8.4:-54304000 | None:intergenic |
AGCAGCTAATCCAACTGAAT+TGG | 0.421069 | 8.4:-54303020 | None:intergenic |
ATGGATACTATGACTGAAAC+AGG | 0.431125 | 8.4:+54301828 | MS.gene069718:CDS |
CGTTGTACACAATCAATACA+TGG | 0.448712 | 8.4:+54303734 | MS.gene069718:CDS |
TCTTGTCAGGATTCATATTG+TGG | 0.452691 | 8.4:+54302366 | MS.gene069718:CDS |
TTCAGTTTCCATGATGATGA+AGG | 0.462307 | 8.4:-54299883 | None:intergenic |
CCACGTTCCTTCACTTTCAG+TGG | 0.463244 | 8.4:+54299973 | MS.gene069718:CDS |
AGCTGTGATTGCTTCCACCC+TGG | 0.464095 | 8.4:+54302328 | MS.gene069718:CDS |
TGGATTAGCTGCTGCTGTGT+TGG | 0.467111 | 8.4:+54303030 | MS.gene069718:CDS |
TGTGTCAAATGCAGTTAACT+TGG | 0.467579 | 8.4:+54302259 | MS.gene069718:CDS |
TGCAGAATACTATAAACAAC+AGG | 0.473003 | 8.4:+54301779 | MS.gene069718:CDS |
TTCAACAATCACACTTTCTC+CGG | 0.475994 | 8.4:-54299860 | None:intergenic |
CTTGGTACTATTTGCAGCAA+AGG | 0.479678 | 8.4:+54302277 | MS.gene069718:CDS |
CAACAGGAGAGGCTCCTTGA+GGG | 0.480373 | 8.4:+54301795 | MS.gene069718:CDS |
AGAGATCCAAGAGAGAATCC+AGG | 0.485355 | 8.4:-54302346 | None:intergenic |
TTGTTGAACCTTCATCATCA+TGG | 0.489038 | 8.4:+54299875 | MS.gene069718:CDS |
TGTTACCGGGTTTGCGAACA+AGG | 0.489300 | 8.4:-54299996 | None:intergenic |
GATGTTATTACCAATTCAGT+TGG | 0.495698 | 8.4:+54303010 | MS.gene069718:CDS |
ATTGGATAGTGAAAATGGTT+TGG | 0.503302 | 8.4:-54302413 | None:intergenic |
AGTGGCCTTGTTCGCAAACC+CGG | 0.504184 | 8.4:+54299991 | MS.gene069718:CDS |
CTATTGGTGGATCGATCCAT+TGG | 0.511645 | 8.4:+54303063 | MS.gene069718:CDS |
GAGAGTGACGGCGGCGCCAC+CGG | 0.511666 | 8.4:+54299841 | MS.gene069718:CDS |
GAGATGGATGATCGCGATCA+TGG | 0.515677 | 8.4:+54302895 | MS.gene069718:CDS |
TTACTATACTTACTGTTACC+GGG | 0.520070 | 8.4:-54300009 | None:intergenic |
TGGCTGTCAAGTTCTATTGG+TGG | 0.535980 | 8.4:+54303050 | MS.gene069718:CDS |
CCATGTCATTATAGCCCTCA+AGG | 0.536767 | 8.4:-54301809 | None:intergenic |
TATTGGTGGATCGATCCATT+GGG | 0.546329 | 8.4:+54303064 | MS.gene069718:CDS |
GAGATCCAAGAGAGAATCCA+GGG | 0.568691 | 8.4:-54302345 | None:intergenic |
TGAATCATAGTGAGTTGAGA+TGG | 0.568901 | 8.4:+54302879 | MS.gene069718:CDS |
AAGTGAAGGAACGTGGTTGA+CGG | 0.568954 | 8.4:-54299966 | None:intergenic |
AAAACAGTGGTCTTGTGCAT+AGG | 0.570292 | 8.4:-54302987 | None:intergenic |
GTGGTTGACGGTTATGATGA+TGG | 0.580191 | 8.4:-54299954 | None:intergenic |
CCTTGAGGGCTATAATGACA+TGG | 0.584762 | 8.4:+54301809 | MS.gene069718:CDS |
AACAATCACACTTTCTCCGG+TGG | 0.594350 | 8.4:-54299857 | None:intergenic |
ATGTATCATCTCTAATTGGA+AGG | 0.601705 | 8.4:+54303776 | MS.gene069718:CDS |
CAGGCCTGAACACAAGATGA+TGG | 0.605331 | 8.4:+54304047 | MS.gene069718:CDS |
TGGCAGGCAAATTATTGCAA+AGG | 0.608764 | 8.4:+54302727 | MS.gene069718:CDS |
GATGGTGATGATGATGATCA+TGG | 0.611195 | 8.4:-54299936 | None:intergenic |
ACAACAGGAGAGGCTCCTTG+AGG | 0.623404 | 8.4:+54301794 | MS.gene069718:CDS |
CTCACAATAATAGCTCCCAA+TGG | 0.632925 | 8.4:-54303079 | None:intergenic |
TAAAACATGTCGGAGAGTGA+CGG | 0.635376 | 8.4:+54299829 | None:intergenic |
AACAAGGCCACTGAAAGTGA+AGG | 0.641573 | 8.4:-54299980 | None:intergenic |
GATTTCAGAGAAGCAACGCA+AGG | 0.647581 | 8.4:+54301755 | MS.gene069718:intron |
AATATGGAATCACCATGAAG+AGG | 0.655738 | 8.4:+54303837 | MS.gene069718:CDS |
GTTGTACACAATCAATACAT+GGG | 0.667462 | 8.4:+54303735 | MS.gene069718:CDS |
TGGTAATAACATCAAAACAG+TGG | 0.669306 | 8.4:-54303000 | None:intergenic |
TGATGATCATGGTGATGATG+TGG | 0.670441 | 8.4:-54299925 | None:intergenic |
AATACTATAAACAACAGGAG+AGG | 0.673271 | 8.4:+54301784 | MS.gene069718:CDS |
ATCATGGAAACTGAATGTGA+AGG | 0.674792 | 8.4:+54299891 | MS.gene069718:CDS |
AACTTTCCTAGAAAATCAGG+TGG | 0.675539 | 8.4:-54303805 | None:intergenic |
CCACTGAAAGTGAAGGAACG+TGG | 0.688283 | 8.4:-54299973 | None:intergenic |
ATCCAAGAGAGAATCCAGGG+TGG | 0.694838 | 8.4:-54302342 | None:intergenic |
TGTGAGAGCATACACATTTG+GGG | 0.703573 | 8.4:+54303876 | MS.gene069718:CDS |
CATTAAAATGAACTTCACAA+CGG | 0.715661 | 8.4:-54302927 | None:intergenic |
AACATGTCGGAGAGTGACGG+CGG | 0.720516 | 8.4:+54299832 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATCAAAACAAGAATAAAAT+AGG | - | chr8.4:54300566-54300585 | None:intergenic | 15.0% |
!! | ATCAAAACAAGAATAAAATA+GGG | - | chr8.4:54300565-54300584 | None:intergenic | 15.0% |
!! | TGAAAAATATACATTATTGA+TGG | - | chr8.4:54300473-54300492 | None:intergenic | 15.0% |
!! | TTGAATTAAAATGAAACTTA+TGG | - | chr8.4:54301038-54301057 | None:intergenic | 15.0% |
!!! | ATACTTTAAGAAAAGATAAA+GGG | - | chr8.4:54301310-54301329 | None:intergenic | 15.0% |
!!! | ATGATTTTTTTTTTGCTTAA+TGG | + | chr8.4:54301559-54301578 | MS.gene069718:intron | 15.0% |
!!! | ATTGTTGAATAATTTTTTAG+TGG | + | chr8.4:54300861-54300880 | MS.gene069718:intron | 15.0% |
!!! | TATACTTTAAGAAAAGATAA+AGG | - | chr8.4:54301311-54301330 | None:intergenic | 15.0% |
!! | AACATATCATACTTAATTAG+TGG | - | chr8.4:54301238-54301257 | None:intergenic | 20.0% |
!! | ATCAAAATTCCAAACATAAA+CGG | - | chr8.4:54300962-54300981 | None:intergenic | 20.0% |
!! | TCAGTTACATTTATAAACTA+TGG | - | chr8.4:54302036-54302055 | None:intergenic | 20.0% |
!!! | ACTAGTTTTTGTCAATATAT+AGG | - | chr8.4:54302641-54302660 | None:intergenic | 20.0% |
!!! | GTTTTCTTTTTGAGTTTTTT+TGG | + | chr8.4:54301724-54301743 | MS.gene069718:intron | 20.0% |
!!! | TGATTGTATTAGTTTTAGTT+GGG | + | chr8.4:54300978-54300997 | MS.gene069718:intron | 20.0% |
!!! | TTGAATAATTTTTTAGTGGT+TGG | + | chr8.4:54300865-54300884 | MS.gene069718:intron | 20.0% |
!!! | TTGATTGTATTAGTTTTAGT+TGG | + | chr8.4:54300977-54300996 | MS.gene069718:intron | 20.0% |
!!! | TTGGTAACTATAAAATTTAG+TGG | - | chr8.4:54303115-54303134 | None:intergenic | 20.0% |
!!! | TTGTTATTTTTGTTTACTTG+TGG | + | chr8.4:54303600-54303619 | MS.gene069718:intron | 20.0% |
! | AACGTTAAATTCTTGAAGAT+TGG | + | chr8.4:54303212-54303231 | MS.gene069718:intron | 25.0% |
! | AAGTATATGCAATATGCAAA+AGG | + | chr8.4:54301324-54301343 | MS.gene069718:intron | 25.0% |
! | AAGTTCATGAACAAAATTGA+TGG | + | chr8.4:54303631-54303650 | MS.gene069718:intron | 25.0% |
! | ACTATCCAATTGGAAAAAAA+CGG | + | chr8.4:54302426-54302445 | MS.gene069718:CDS | 25.0% |
! | ATATTGTGTGCTTGATTTAA+AGG | - | chr8.4:54303946-54303965 | None:intergenic | 25.0% |
! | ATTACTATACTTACTGTTAC+CGG | - | chr8.4:54300013-54300032 | None:intergenic | 25.0% |
! | CATTAAAATGAACTTCACAA+CGG | - | chr8.4:54302930-54302949 | None:intergenic | 25.0% |
! | CATTCAATTAATGACGTATA+TGG | + | chr8.4:54300717-54300736 | MS.gene069718:intron | 25.0% |
! | CATTCATTAAATGATGTATG+TGG | - | chr8.4:54300756-54300775 | None:intergenic | 25.0% |
! | GATTTCAATTATTTGGATTG+TGG | + | chr8.4:54303189-54303208 | MS.gene069718:intron | 25.0% |
! | GGTCTTAGATTTCAATTATT+TGG | + | chr8.4:54303182-54303201 | MS.gene069718:intron | 25.0% |
! | GTATATCATATATGAGTACA+TGG | - | chr8.4:54300637-54300656 | None:intergenic | 25.0% |
! | TAAGTATGATATGTTGAGTT+AGG | + | chr8.4:54301243-54301262 | MS.gene069718:intron | 25.0% |
! | TCAATCTTATCTTTGTGAAA+TGG | + | chr8.4:54301702-54301721 | MS.gene069718:intron | 25.0% |
! | TGTTTGTATTTCATAGCAAA+AGG | + | chr8.4:54301182-54301201 | MS.gene069718:intron | 25.0% |
! | TTAAATCAAGCACACAATAT+TGG | + | chr8.4:54303946-54303965 | MS.gene069718:CDS | 25.0% |
!! | ACACGATTAAAAATAATGGA+CGG | - | chr8.4:54303327-54303346 | None:intergenic | 25.0% |
!! | GCAACATTTGTTACAAAATA+AGG | - | chr8.4:54301939-54301958 | None:intergenic | 25.0% |
!! | TTGATTTTGAATATACTCAC+AGG | + | chr8.4:54304028-54304047 | MS.gene069718:CDS | 25.0% |
!! | TTGCTATTATAAAAAGCAGA+TGG | - | chr8.4:54301373-54301392 | None:intergenic | 25.0% |
!!! | AAAGATAAAGGGTATTATAG+AGG | - | chr8.4:54301299-54301318 | None:intergenic | 25.0% |
!!! | AGATAATCTCATTTTCAAGT+AGG | - | chr8.4:54301419-54301438 | None:intergenic | 25.0% |
!!! | CCATAATGTAAATGTTTTAG+AGG | - | chr8.4:54302000-54302019 | None:intergenic | 25.0% |
!!! | CCTCTAAAACATTTACATTA+TGG | + | chr8.4:54301997-54302016 | MS.gene069718:intron | 25.0% |
!!! | TATTCTTGTTTTGATTGTGT+TGG | + | chr8.4:54300570-54300589 | MS.gene069718:intron | 25.0% |
!!! | TTGTTTTTTCCGTTTATGTT+TGG | + | chr8.4:54300950-54300969 | MS.gene069718:intron | 25.0% |
!!! | TTTTTTTTTTGCAGTCTTCT+TGG | + | chr8.4:54300898-54300917 | MS.gene069718:intron | 25.0% |
AAAAAATGAAGACTTACCAC+TGG | - | chr8.4:54302458-54302477 | None:intergenic | 30.0% | |
AAAACATCTTTCATGAGTGT+TGG | + | chr8.4:54300827-54300846 | MS.gene069718:intron | 30.0% | |
AAACATCTTTCATGAGTGTT+GGG | + | chr8.4:54300828-54300847 | MS.gene069718:intron | 30.0% | |
AAACATTTACATTATGGTCG+CGG | + | chr8.4:54302003-54302022 | MS.gene069718:intron | 30.0% | |
AACAGACAAGATTACAAGTA+AGG | - | chr8.4:54302818-54302837 | None:intergenic | 30.0% | |
AACTCACTATGATTCATTTC+AGG | - | chr8.4:54302875-54302894 | None:intergenic | 30.0% | |
AATACTATAAACAACAGGAG+AGG | + | chr8.4:54301784-54301803 | MS.gene069718:CDS | 30.0% | |
AATCACAACTGAAATTGCTT+CGG | - | chr8.4:54301967-54301986 | None:intergenic | 30.0% | |
ACATCTTCAGAAGAAGAAAA+CGG | - | chr8.4:54300055-54300074 | None:intergenic | 30.0% | |
AGCCACACGATTAAAAATAA+TGG | - | chr8.4:54303331-54303350 | None:intergenic | 30.0% | |
AGTTCACATATTAGTGATTC+TGG | - | chr8.4:54302182-54302201 | None:intergenic | 30.0% | |
ATAGCATAGACTAACGAAAT+AGG | + | chr8.4:54303554-54303573 | MS.gene069718:intron | 30.0% | |
ATGGTCCAAAATTCTATAAG+TGG | - | chr8.4:54301354-54301373 | None:intergenic | 30.0% | |
ATGTAATCATGTGTCAGTAT+CGG | - | chr8.4:54301124-54301143 | None:intergenic | 30.0% | |
ATGTATCATCTCTAATTGGA+AGG | + | chr8.4:54303776-54303795 | MS.gene069718:CDS | 30.0% | |
ATTGGATAGTGAAAATGGTT+TGG | - | chr8.4:54302416-54302435 | None:intergenic | 30.0% | |
CATCTCTTGTTAGTAATTTG+AGG | + | chr8.4:54301510-54301529 | MS.gene069718:intron | 30.0% | |
CATTAACACTAATACACCTT+CGG | - | chr8.4:54300449-54300468 | None:intergenic | 30.0% | |
GACACAAATTAAGTATGTTC+CGG | + | chr8.4:54301078-54301097 | MS.gene069718:intron | 30.0% | |
GAGAATGTATCATCTCTAAT+TGG | + | chr8.4:54303772-54303791 | MS.gene069718:CDS | 30.0% | |
GAGATTGCTAAATTAGAGAT+TGG | - | chr8.4:54303134-54303153 | None:intergenic | 30.0% | |
GAGTAAACTAGTAATTGTCT+GGG | + | chr8.4:54303265-54303284 | MS.gene069718:intron | 30.0% | |
GATATGTTGAGTTAGGAAAT+TGG | + | chr8.4:54301250-54301269 | MS.gene069718:intron | 30.0% | |
GATGTTATTACCAATTCAGT+TGG | + | chr8.4:54303010-54303029 | MS.gene069718:CDS | 30.0% | |
GCACAATTGTAGATAATACT+TGG | + | chr8.4:54301586-54301605 | MS.gene069718:intron | 30.0% | |
GTATATTCTGTTACTCACAA+AGG | - | chr8.4:54301016-54301035 | None:intergenic | 30.0% | |
GTTGTACACAATCAATACAT+GGG | + | chr8.4:54303735-54303754 | MS.gene069718:CDS | 30.0% | |
TATGAGTACATGGTTCATAT+AGG | - | chr8.4:54300627-54300646 | None:intergenic | 30.0% | |
TGACAAAAACTAGTTATGCA+GGG | + | chr8.4:54302647-54302666 | MS.gene069718:intron | 30.0% | |
TGAGTGAAAATGATAGTCAT+TGG | + | chr8.4:54302505-54302524 | MS.gene069718:intron | 30.0% | |
TGCAGAATACTATAAACAAC+AGG | + | chr8.4:54301779-54301798 | MS.gene069718:CDS | 30.0% | |
TGGTAATAACATCAAAACAG+TGG | - | chr8.4:54303003-54303022 | None:intergenic | 30.0% | |
TTACTATACTTACTGTTACC+GGG | - | chr8.4:54300012-54300031 | None:intergenic | 30.0% | |
TTCCAATTGGATAGTGAAAA+TGG | - | chr8.4:54302421-54302440 | None:intergenic | 30.0% | |
TTGACAAAAACTAGTTATGC+AGG | + | chr8.4:54302646-54302665 | MS.gene069718:intron | 30.0% | |
TTGCTATGAAATACAAACAC+CGG | - | chr8.4:54301181-54301200 | None:intergenic | 30.0% | |
! | AACCATTTTCACTATCCAAT+TGG | + | chr8.4:54302416-54302435 | MS.gene069718:CDS | 30.0% |
! | CGTTGTGAAGTTCATTTTAA+TGG | + | chr8.4:54302928-54302947 | MS.gene069718:CDS | 30.0% |
! | GTTGTCCACTTATAGAATTT+TGG | + | chr8.4:54301346-54301365 | MS.gene069718:intron | 30.0% |
! | GTTTTGCTTATAATAGTGAC+CGG | + | chr8.4:54300791-54300810 | MS.gene069718:intron | 30.0% |
! | GTTTTGCTTATAATAGTGAC+CGG | - | chr8.4:54300810-54300791 | None:intergenic | 30.0% |
! | TGACACATTTAAAATCCAGT+TGG | - | chr8.4:54301626-54301645 | None:intergenic | 30.0% |
! | TTTTAAACAATCTCGACCAT+CGG | + | chr8.4:54303375-54303394 | MS.gene069718:intron | 30.0% |
! | TTTTAATGGTATACTGTCGA+AGG | + | chr8.4:54302942-54302961 | MS.gene069718:CDS | 30.0% |
!! | ATAAGGCAGTTGATTTTTGA+AGG | + | chr8.4:54303403-54303422 | MS.gene069718:intron | 30.0% |
!! | CACGATTAAAAATAATGGAC+GGG | - | chr8.4:54303326-54303345 | None:intergenic | 30.0% |
!! | CTACTGTCATACTTTTTGTT+TGG | + | chr8.4:54301437-54301456 | MS.gene069718:intron | 30.0% |
!! | CTTTTGTGTATGTGATTTGT+AGG | + | chr8.4:54300524-54300543 | MS.gene069718:intron | 30.0% |
!! | TAAGGCAGTTGATTTTTGAA+GGG | + | chr8.4:54303404-54303423 | MS.gene069718:intron | 30.0% |
!!! | AAAATGGTTTGGTGTTTTCA+TGG | - | chr8.4:54302405-54302424 | None:intergenic | 30.0% |
!!! | CATTTTCAAGTAGGTACTAA+AGG | - | chr8.4:54301410-54301429 | None:intergenic | 30.0% |
!!! | GTCCATTATTTTTAATCGTG+TGG | + | chr8.4:54303326-54303345 | MS.gene069718:intron | 30.0% |
!!! | TGTTTTTTAATTACACCCTC+CGG | - | chr8.4:54300813-54300832 | None:intergenic | 30.0% |
AAATGCAGATCACAGAAAAC+TGG | - | chr8.4:54302599-54302618 | None:intergenic | 35.0% | |
AACTTTCCTAGAAAATCAGG+TGG | - | chr8.4:54303808-54303827 | None:intergenic | 35.0% | |
AATATGGAATCACCATGAAG+AGG | + | chr8.4:54303837-54303856 | MS.gene069718:CDS | 35.0% | |
AATCGTTAGAGACTACATGA+GGG | - | chr8.4:54303470-54303489 | None:intergenic | 35.0% | |
ACAAAAGCTCTTTCAACTTC+AGG | - | chr8.4:54304003-54304022 | None:intergenic | 35.0% | |
ACTTGCACATAATTCCTCAA+GGG | + | chr8.4:54303161-54303180 | MS.gene069718:intron | 35.0% | |
ATCATGGAAACTGAATGTGA+AGG | + | chr8.4:54299891-54299910 | MS.gene069718:CDS | 35.0% | |
ATGGATACTATGACTGAAAC+AGG | + | chr8.4:54301828-54301847 | MS.gene069718:CDS | 35.0% | |
ATGTGAACTCTATGATTCTC+AGG | + | chr8.4:54302193-54302212 | MS.gene069718:intron | 35.0% | |
ATTCAATCACCAAACACTCT+TGG | - | chr8.4:54302486-54302505 | None:intergenic | 35.0% | |
CGAGTAAACTAGTAATTGTC+TGG | + | chr8.4:54303264-54303283 | MS.gene069718:intron | 35.0% | |
CGTTGTACACAATCAATACA+TGG | + | chr8.4:54303734-54303753 | MS.gene069718:CDS | 35.0% | |
GTCAACTTTCCTAGAAAATC+AGG | - | chr8.4:54303811-54303830 | None:intergenic | 35.0% | |
TATACCATCATCTTGTGTTC+AGG | - | chr8.4:54304054-54304073 | None:intergenic | 35.0% | |
TATAGAGGCTGATCTTCAAA+GGG | - | chr8.4:54301284-54301303 | None:intergenic | 35.0% | |
TCTTGTCAGGATTCATATTG+TGG | + | chr8.4:54302366-54302385 | MS.gene069718:CDS | 35.0% | |
TGTACAACGCTATCTACATA+CGG | - | chr8.4:54303723-54303742 | None:intergenic | 35.0% | |
TGTGTCAAATGCAGTTAACT+TGG | + | chr8.4:54302259-54302278 | MS.gene069718:CDS | 35.0% | |
TTATAGAGGCTGATCTTCAA+AGG | - | chr8.4:54301285-54301304 | None:intergenic | 35.0% | |
TTCAACAATCACACTTTCTC+CGG | - | chr8.4:54299863-54299882 | None:intergenic | 35.0% | |
TTGTTGAACCTTCATCATCA+TGG | + | chr8.4:54299875-54299894 | MS.gene069718:CDS | 35.0% | |
! | ATTGAAATCTAAGACCCTTG+AGG | - | chr8.4:54303178-54303197 | None:intergenic | 35.0% |
! | TATTCGTTATTTGTTACCGC+CGG | + | chr8.4:54303656-54303675 | MS.gene069718:intron | 35.0% |
! | TGAATCATAGTGAGTTGAGA+TGG | + | chr8.4:54302879-54302898 | MS.gene069718:CDS | 35.0% |
! | TGATTTAAAGGCATGTCTTC+TGG | - | chr8.4:54303934-54303953 | None:intergenic | 35.0% |
! | TTCAGTTTCCATGATGATGA+AGG | - | chr8.4:54299886-54299905 | None:intergenic | 35.0% |
!! | GATTATTGCGTGTTTTTGCA+AGG | - | chr8.4:54303300-54303319 | None:intergenic | 35.0% |
!! | GGCTCATTATTTTGTTGAAG+TGG | + | chr8.4:54303897-54303916 | MS.gene069718:CDS | 35.0% |
!!! | CAGATGCATGCTATTTTATG+TGG | - | chr8.4:54302073-54302092 | None:intergenic | 35.0% |
!!! | CATTGTTTTTGCATCAGTGA+TGG | + | chr8.4:54302673-54302692 | MS.gene069718:CDS | 35.0% |
!!! | CTTGTTTTGATTGTGTTGGT+TGG | + | chr8.4:54300574-54300593 | MS.gene069718:intron | 35.0% |
!!! | TGCATCCGTTTTTTTCCAAT+TGG | - | chr8.4:54302434-54302453 | None:intergenic | 35.0% |
!!! | TTGCAGATTTTGATTGAGTC+TGG | + | chr8.4:54302707-54302726 | MS.gene069718:CDS | 35.0% |
!!! | TTTTAACCTCCAAGAGTGTT+TGG | + | chr8.4:54302474-54302493 | MS.gene069718:intron | 35.0% |
AACTGAAATTGCTTCGGCAT+TGG | - | chr8.4:54301961-54301980 | None:intergenic | 40.0% | |
ACCAATAACACGACTGAAAC+AGG | + | chr8.4:54301911-54301930 | MS.gene069718:intron | 40.0% | |
AGATCAATCATGAAACCGAC+CGG | - | chr8.4:54303678-54303697 | None:intergenic | 40.0% | |
AGCAGCTAATCCAACTGAAT+TGG | - | chr8.4:54303023-54303042 | None:intergenic | 40.0% | |
ATCATTATCGTGTCTGGTGT+CGG | + | chr8.4:54300495-54300514 | MS.gene069718:intron | 40.0% | |
CAAACAACACTTCATACCGA+AGG | + | chr8.4:54300430-54300449 | MS.gene069718:intron | 40.0% | |
CAATCGTTAGAGACTACATG+AGG | - | chr8.4:54303471-54303490 | None:intergenic | 40.0% | |
CGCGACAAAATAATCTACCT+CGG | - | chr8.4:54301874-54301893 | None:intergenic | 40.0% | |
CTATGAACGACACTAACATG+TGG | - | chr8.4:54300155-54300174 | None:intergenic | 40.0% | |
CTATGTGCTTAACCTCTTCA+TGG | - | chr8.4:54303852-54303871 | None:intergenic | 40.0% | |
CTCACAATAATAGCTCCCAA+TGG | - | chr8.4:54303082-54303101 | None:intergenic | 40.0% | |
CTTGGTACTATTTGCAGCAA+AGG | + | chr8.4:54302277-54302296 | MS.gene069718:CDS | 40.0% | |
GAAAACGGAGAGAGAAAGAA+AGG | - | chr8.4:54300040-54300059 | None:intergenic | 40.0% | |
GACTACATGAGGGATAAAGT+AGG | - | chr8.4:54303460-54303479 | None:intergenic | 40.0% | |
GACTTGCACATAATTCCTCA+AGG | + | chr8.4:54303160-54303179 | MS.gene069718:intron | 40.0% | |
GGTTCATATAGGCACGTAAT+TGG | - | chr8.4:54300616-54300635 | None:intergenic | 40.0% | |
TAGGCACGTAATTGGTGAAA+AGG | - | chr8.4:54300608-54300627 | None:intergenic | 40.0% | |
TGCTTATAATAGTGACCGGA+GGG | + | chr8.4:54300795-54300814 | MS.gene069718:intron | 40.0% | |
TGCTTATAATAGTGACCGGA+GGG | - | chr8.4:54300814-54300795 | None:intergenic | 40.0% | |
TGGCAGGCAAATTATTGCAA+AGG | + | chr8.4:54302727-54302746 | MS.gene069718:CDS | 40.0% | |
TTCACCATCATTATCGTGTC+TGG | + | chr8.4:54300489-54300508 | MS.gene069718:intron | 40.0% | |
TTGCTTATAATAGTGACCGG+AGG | + | chr8.4:54300794-54300813 | MS.gene069718:intron | 40.0% | |
TTGCTTATAATAGTGACCGG+AGG | - | chr8.4:54300813-54300794 | None:intergenic | 40.0% | |
! | ACTAGTAATTGTCTGGGACA+CGG | + | chr8.4:54303271-54303290 | MS.gene069718:intron | 40.0% |
! | ACTGTGAGAGCATACACATT+TGG | + | chr8.4:54303874-54303893 | MS.gene069718:CDS | 40.0% |
! | CACATGTTAGTGTCGTTCAT+AGG | + | chr8.4:54300153-54300172 | MS.gene069718:intron | 40.0% |
! | CTGTGAGAGCATACACATTT+GGG | + | chr8.4:54303875-54303894 | MS.gene069718:CDS | 40.0% |
! | GATGGTGATGATGATGATCA+TGG | - | chr8.4:54299939-54299958 | None:intergenic | 40.0% |
! | TATTGGTGGATCGATCCATT+GGG | + | chr8.4:54303064-54303083 | MS.gene069718:CDS | 40.0% |
! | TGATGATCATGGTGATGATG+TGG | - | chr8.4:54299928-54299947 | None:intergenic | 40.0% |
! | TGTGAGAGCATACACATTTG+GGG | + | chr8.4:54303876-54303895 | MS.gene069718:CDS | 40.0% |
! | TGTTGGCTGTCAAGTTCTAT+TGG | + | chr8.4:54303047-54303066 | MS.gene069718:CDS | 40.0% |
! | TTTTGCAGTCTTCTTGGTGA+TGG | + | chr8.4:54300904-54300923 | MS.gene069718:intron | 40.0% |
!! | AAAACAGTGGTCTTGTGCAT+AGG | - | chr8.4:54302990-54303009 | None:intergenic | 40.0% |
!! | ACTGAAACAGGACTTTTTCC+AGG | + | chr8.4:54301840-54301859 | MS.gene069718:CDS | 40.0% |
!! | CTTCGGTATGAAGTGTTGTT+TGG | - | chr8.4:54300432-54300451 | None:intergenic | 40.0% |
!!! | AGATTTTGATTGAGTCTGGC+AGG | + | chr8.4:54302711-54302730 | MS.gene069718:CDS | 40.0% |
!!! | GTTTGGTGTTTTCATGGCAT+TGG | - | chr8.4:54302399-54302418 | None:intergenic | 40.0% |
!!! | GTTTTGATTGTGTTGGTTGG+TGG | + | chr8.4:54300577-54300596 | MS.gene069718:intron | 40.0% |
AAAAAAACGGATGCAGCCAG+TGG | + | chr8.4:54302439-54302458 | MS.gene069718:CDS | 45.0% | |
AACAAGGCCACTGAAAGTGA+AGG | - | chr8.4:54299983-54300002 | None:intergenic | 45.0% | |
AACAATCACACTTTCTCCGG+TGG | - | chr8.4:54299860-54299879 | None:intergenic | 45.0% | |
AACGGAGAGAGAAAGAAAGG+AGG | - | chr8.4:54300037-54300056 | None:intergenic | 45.0% | |
AACTGCCTTATCTAAGCCGA+TGG | - | chr8.4:54303394-54303413 | None:intergenic | 45.0% | |
AAGTGAAGGAACGTGGTTGA+CGG | - | chr8.4:54299969-54299988 | None:intergenic | 45.0% | |
ACGGAGAGAGAAAGAAAGGA+GGG | - | chr8.4:54300036-54300055 | None:intergenic | 45.0% | |
AGAGATCCAAGAGAGAATCC+AGG | - | chr8.4:54302349-54302368 | None:intergenic | 45.0% | |
CAATCACCAAACACTCTTGG+AGG | - | chr8.4:54302483-54302502 | None:intergenic | 45.0% | |
CCATGTCATTATAGCCCTCA+AGG | - | chr8.4:54301812-54301831 | None:intergenic | 45.0% | |
CCTTGAGGGCTATAATGACA+TGG | + | chr8.4:54301809-54301828 | MS.gene069718:CDS | 45.0% | |
CTGAAGATGTGTCCTTGAGT+CGG | + | chr8.4:54300065-54300084 | MS.gene069718:intron | 45.0% | |
GACACCAGACACGATAATGA+TGG | - | chr8.4:54300496-54300515 | None:intergenic | 45.0% | |
GAGATCCAAGAGAGAATCCA+GGG | - | chr8.4:54302348-54302367 | None:intergenic | 45.0% | |
GATTTCAGAGAAGCAACGCA+AGG | + | chr8.4:54301755-54301774 | MS.gene069718:intron | 45.0% | |
GCATCAGTGATGGCAACTTT+GGG | + | chr8.4:54302683-54302702 | MS.gene069718:CDS | 45.0% | |
GCCTGTTTCAGTCGTGTTAT+TGG | - | chr8.4:54301915-54301934 | None:intergenic | 45.0% | |
GTGGTTGACGGTTATGATGA+TGG | - | chr8.4:54299957-54299976 | None:intergenic | 45.0% | |
TCAACTGCATGCAACTGTTG+TGG | - | chr8.4:54300264-54300283 | None:intergenic | 45.0% | |
TCTCTCTTGGATCTCTTGTC+AGG | + | chr8.4:54302353-54302372 | MS.gene069718:CDS | 45.0% | |
TGCATCAGTGATGGCAACTT+TGG | + | chr8.4:54302682-54302701 | MS.gene069718:CDS | 45.0% | |
TGGCTGTCAAGTTCTATTGG+TGG | + | chr8.4:54303050-54303069 | MS.gene069718:CDS | 45.0% | |
TTCCGGTATCAGACATGTGT+CGG | + | chr8.4:54301095-54301114 | MS.gene069718:intron | 45.0% | |
! | ACAGCACCACCTGATTTTCT+AGG | + | chr8.4:54303799-54303818 | MS.gene069718:CDS | 45.0% |
! | CTATTGGTGGATCGATCCAT+TGG | + | chr8.4:54303063-54303082 | MS.gene069718:CDS | 45.0% |
! | GATCTAGCTTCTGAACCAAC+TGG | + | chr8.4:54301608-54301627 | MS.gene069718:intron | 45.0% |
! | TTTTCCAGGAAGTCTTACCG+AGG | + | chr8.4:54301854-54301873 | MS.gene069718:CDS | 45.0% |
!! | TGGTGTTTTCATGGCATTGG+CGG | - | chr8.4:54302396-54302415 | None:intergenic | 45.0% |
ATCCAAGAGAGAATCCAGGG+TGG | - | chr8.4:54302345-54302364 | None:intergenic | 50.0% | |
CAGGCCTGAACACAAGATGA+TGG | + | chr8.4:54304047-54304066 | MS.gene069718:CDS | 50.0% | |
CCACGTTCCTTCACTTTCAG+TGG | + | chr8.4:54299973-54299992 | MS.gene069718:CDS | 50.0% | |
CCACTGAAAGTGAAGGAACG+TGG | - | chr8.4:54299976-54299995 | None:intergenic | 50.0% | |
GAGATGGATGATCGCGATCA+TGG | + | chr8.4:54302895-54302914 | MS.gene069718:CDS | 50.0% | |
TACAAACACCGGACACGACA+CGG | - | chr8.4:54301170-54301189 | None:intergenic | 50.0% | |
TCAATCATGAAACCGACCGG+CGG | - | chr8.4:54303675-54303694 | None:intergenic | 50.0% | |
TCTACCTCGGTAAGACTTCC+TGG | - | chr8.4:54301861-54301880 | None:intergenic | 50.0% | |
TGCCGACACATGTCTGATAC+CGG | - | chr8.4:54301100-54301119 | None:intergenic | 50.0% | |
TGTTACCGGGTTTGCGAACA+AGG | - | chr8.4:54299999-54300018 | None:intergenic | 50.0% | |
TTCCACCCTGGATTCTCTCT+TGG | + | chr8.4:54302340-54302359 | MS.gene069718:CDS | 50.0% | |
! | CGTTATTTGTTACCGCCGGT+CGG | + | chr8.4:54303660-54303679 | MS.gene069718:intron | 50.0% |
!! | CTCGACCATCGGCTTAGATA+AGG | + | chr8.4:54303386-54303405 | MS.gene069718:intron | 50.0% |
!! | CTGTGTCAAACACCGACTCA+AGG | - | chr8.4:54300080-54300099 | None:intergenic | 50.0% |
!! | TCGTGTTATTGGTGCCACGT+TGG | - | chr8.4:54301904-54301923 | None:intergenic | 50.0% |
!! | TGGATTAGCTGCTGCTGTGT+TGG | + | chr8.4:54303030-54303049 | MS.gene069718:CDS | 50.0% |
ACAACAGGAGAGGCTCCTTG+AGG | + | chr8.4:54301794-54301813 | MS.gene069718:CDS | 55.0% | |
AGCTGTGATTGCTTCCACCC+TGG | + | chr8.4:54302328-54302347 | MS.gene069718:CDS | 55.0% | |
AGTCACCGAAGTACACCCTC+CGG | + | chr8.4:54300660-54300679 | MS.gene069718:intron | 55.0% | |
CAACAGGAGAGGCTCCTTGA+GGG | + | chr8.4:54301795-54301814 | MS.gene069718:CDS | 55.0% | |
! | AGTGACCGGAGGGTGTACTT+CGG | - | chr8.4:54300668-54300687 | None:intergenic | 55.0% |
! | TGTCGCGCTTGTTACCAACG+TGG | + | chr8.4:54301887-54301906 | MS.gene069718:intron | 55.0% |
!! | AGTGGCCTTGTTCGCAAACC+CGG | + | chr8.4:54299991-54300010 | MS.gene069718:CDS | 55.0% |
ACCGGACACGACACGGACAC+AGG | - | chr8.4:54301163-54301182 | None:intergenic | 65.0% | |
GCCTGTGTCCGTGTCGTGTC+CGG | + | chr8.4:54301159-54301178 | MS.gene069718:intron | 65.0% | |
GAGAGTGACGGCGGCGCCAC+CGG | + | chr8.4:54299841-54299860 | MS.gene069718:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 54299835 | 54304074 | 54299835 | ID=MS.gene069718 |
chr8.4 | mRNA | 54299835 | 54304074 | 54299835 | ID=MS.gene069718.t1;Parent=MS.gene069718 |
chr8.4 | exon | 54299835 | 54300018 | 54299835 | ID=MS.gene069718.t1.exon1;Parent=MS.gene069718.t1 |
chr8.4 | CDS | 54299835 | 54300018 | 54299835 | ID=cds.MS.gene069718.t1;Parent=MS.gene069718.t1 |
chr8.4 | exon | 54301763 | 54301875 | 54301763 | ID=MS.gene069718.t1.exon2;Parent=MS.gene069718.t1 |
chr8.4 | CDS | 54301763 | 54301875 | 54301763 | ID=cds.MS.gene069718.t1;Parent=MS.gene069718.t1 |
chr8.4 | exon | 54302215 | 54302460 | 54302215 | ID=MS.gene069718.t1.exon3;Parent=MS.gene069718.t1 |
chr8.4 | CDS | 54302215 | 54302460 | 54302215 | ID=cds.MS.gene069718.t1;Parent=MS.gene069718.t1 |
chr8.4 | exon | 54302668 | 54302748 | 54302668 | ID=MS.gene069718.t1.exon4;Parent=MS.gene069718.t1 |
chr8.4 | CDS | 54302668 | 54302748 | 54302668 | ID=cds.MS.gene069718.t1;Parent=MS.gene069718.t1 |
chr8.4 | exon | 54302866 | 54303096 | 54302866 | ID=MS.gene069718.t1.exon5;Parent=MS.gene069718.t1 |
chr8.4 | CDS | 54302866 | 54303096 | 54302866 | ID=cds.MS.gene069718.t1;Parent=MS.gene069718.t1 |
chr8.4 | exon | 54303730 | 54304074 | 54303730 | ID=MS.gene069718.t1.exon6;Parent=MS.gene069718.t1 |
chr8.4 | CDS | 54303730 | 54304074 | 54303730 | ID=cds.MS.gene069718.t1;Parent=MS.gene069718.t1 |
Gene Sequence |
Protein sequence |