AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene069896

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069896.t1 MTR_2g097530 94.670 394 21 0 1 394 54 447 0.0 760
MS.gene069896.t1 MTR_2g100560 93.401 394 26 0 1 394 59 452 0.0 755
MS.gene069896.t1 MTR_2g100510 85.279 394 58 0 1 394 54 447 0.0 687
MS.gene069896.t1 MTR_2g097540 82.234 394 70 0 1 394 50 443 0.0 662
MS.gene069896.t1 MTR_2g100520 81.980 394 71 0 1 394 54 447 0.0 662
MS.gene069896.t1 MTR_8g015510 71.033 397 112 3 1 394 51 447 0.0 569
MS.gene069896.t1 MTR_8g015510 70.031 327 95 3 71 394 1 327 1.69e-160 454
MS.gene069896.t1 MTR_3g088590 55.496 373 166 0 4 376 100 472 4.05e-152 438
MS.gene069896.t1 MTR_8g062790 56.000 375 163 1 1 375 52 424 3.04e-148 427
MS.gene069896.t1 MTR_3g093030 50.133 377 186 2 1 376 40 415 3.69e-136 395
MS.gene069896.t1 MTR_8g075310 53.495 372 156 2 1 372 59 413 1.03e-132 387
MS.gene069896.t1 MTR_8g063060 43.791 306 140 7 69 371 58 334 1.09e-72 232
MS.gene069896.t1 MTR_2g100550 89.091 110 12 0 1 110 50 159 7.11e-61 207
MS.gene069896.t1 MTR_1g028070 64.912 114 40 0 102 215 14 127 2.96e-45 152
MS.gene069896.t1 MTR_3g077040 49.254 134 44 2 84 217 1 110 4.54e-32 117
MS.gene069896.t1 MTR_2g100530 76.786 56 13 0 339 394 14 69 8.85e-23 91.3
MS.gene069896.t1 MTR_8g062090 55.263 114 13 3 110 217 29 110 1.05e-20 87.0
MS.gene069896.t1 MTR_3g093040 44.554 101 46 1 84 174 1 101 1.79e-18 85.9
MS.gene069896.t1 MTR_1205s0010 29.167 168 113 3 198 364 1 163 1.25e-15 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069896.t1 AT1G51760 69.657 379 115 0 1 379 48 426 0.0 568
MS.gene069896.t1 AT1G51780 64.987 377 132 0 1 377 48 424 0.0 515
MS.gene069896.t1 AT5G56660 61.968 376 140 2 1 376 51 423 1.83e-171 486
MS.gene069896.t1 AT5G56650 60.152 394 152 3 1 394 50 438 2.55e-168 478
MS.gene069896.t1 AT1G44350 52.116 378 176 1 4 381 92 464 4.65e-133 389
MS.gene069896.t1 AT3G02875 50.928 377 183 2 1 376 52 427 7.81e-129 378
MS.gene069896.t1 AT5G54140 49.602 377 189 1 1 376 41 417 1.41e-128 377
MS.gene069896.t1 AT5G56650 68.966 261 79 1 1 261 50 308 3.29e-127 369
MS.gene069896.t1 AT3G02875 56.154 260 114 0 1 260 52 311 2.18e-98 296
MS.gene069896.t1 AT3G02875 57.014 221 95 0 4 224 55 275 2.72e-84 259

Find 103 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATGTCTCTGCCATATT+TGG 0.135934 2.1:+4281336 MS.gene069896:CDS
TTCACGCCTCGTTGGCTTCT+AGG 0.219057 2.1:+4282380 MS.gene069896:CDS
GCTCATGTTGCTATGCTTCT+TGG 0.234508 2.1:+4280343 MS.gene069896:CDS
TAAGCTTATAAGAGCAAAAT+TGG 0.238968 2.1:+4279766 MS.gene069896:CDS
TACATTGGAAGCCGCCAAAA+TGG 0.241878 2.1:-4281496 None:intergenic
ATCTTCGTTGACTTTGAAAT+AGG 0.262379 2.1:-4282335 None:intergenic
GTTGCAGTTACAGGTGTTAT+TGG 0.269161 2.1:+4279818 MS.gene069896:CDS
ACTGCAACTGGATGTTTATA+TGG 0.269781 2.1:-4279803 None:intergenic
CCACCAATTGTGACGGAGTC+TGG 0.290981 2.1:-4281808 None:intergenic
CCATGCTATCGACCCCATTT+TGG 0.297995 2.1:+4281482 MS.gene069896:CDS
GGTTTCTTTGAAGCAGTAAT+AGG 0.339152 2.1:+4281429 MS.gene069896:CDS
AAACATCCAGTTGCAGTTAC+AGG 0.341960 2.1:+4279809 MS.gene069896:CDS
TCTTCGTTGACTTTGAAATA+GGG 0.361589 2.1:-4282334 None:intergenic
AGAGCAAAATTGGATGAATT+AGG 0.365064 2.1:+4279776 MS.gene069896:CDS
CCGGCACCTCCTTCTTCTGC+TGG 0.366326 2.1:-4281282 None:intergenic
GGCATCGAGGTCTGGTCCTA+TGG 0.372621 2.1:+4281395 MS.gene069896:CDS
AACGAAGATTCACTTCCTTA+TGG 0.377189 2.1:+4282349 MS.gene069896:CDS
ATTTCTTGATAACTCAGTTC+AGG 0.377616 2.1:-4279734 None:intergenic
ACATTGGAAGCCGCCAAAAT+GGG 0.383447 2.1:-4281495 None:intergenic
TGCGACATGCAATCCAAATA+TGG 0.385556 2.1:-4281349 None:intergenic
TTGATTGGATGGTGTGGATA+AGG 0.388359 2.1:+4279693 None:intergenic
GAGCATAAAAGTAAAGTATC+TGG 0.389149 2.1:+4280295 MS.gene069896:CDS
ATAACACCTGTAACTGCAAC+TGG 0.394336 2.1:-4279815 None:intergenic
TTCTATCAAGCAGCGTTGCC+TGG 0.394442 2.1:+4282250 MS.gene069896:CDS
GTCGCACCTAACTTACCTTT+AGG 0.409026 2.1:+4281366 MS.gene069896:CDS
CCTGGATACATCTTCCTCCT+TGG 0.409468 2.1:+4282268 MS.gene069896:CDS
ACTTCACCTAAAGGTAAGTT+AGG 0.423623 2.1:-4281372 None:intergenic
GTTATTGGTTACATAGGAAC+TGG 0.430657 2.1:+4279833 MS.gene069896:CDS
AGGCAACGCTGCTTGATAGA+AGG 0.435447 2.1:-4282248 None:intergenic
CCAGCAGAAGAAGGAGGTGC+CGG 0.447243 2.1:+4281282 MS.gene069896:CDS
GAAGCAGTAATAGGCGGCAT+GGG 0.450299 2.1:+4281438 MS.gene069896:CDS
ATTCCAGACTCCGTCACAAT+TGG 0.451819 2.1:+4281805 MS.gene069896:CDS
GGTGAAGTGGCATCGAGGTC+TGG 0.452795 2.1:+4281387 MS.gene069896:CDS
ACACTAGGAATTGTTGGAAT+GGG 0.457203 2.1:+4280273 MS.gene069896:intron
CCACCATTGTTTATAGTTGG+AGG 0.460157 2.1:-4282133 None:intergenic
CAGCAGAAGAAGGAGGTGCC+GGG 0.460230 2.1:+4281283 MS.gene069896:CDS
AAGCCACCATTGTTTATAGT+TGG 0.464277 2.1:-4282136 None:intergenic
CTGATCCCAACATTGGCTGC+TGG 0.467681 2.1:-4282216 None:intergenic
TGAAAGGCGTCTCTTCTTCA+AGG 0.468685 2.1:-4282108 None:intergenic
GTATCTTGTCAAGCTTCATC+AGG 0.471093 2.1:+4282402 MS.gene069896:CDS
AAAGACCAGCAGCCAATGTT+GGG 0.474787 2.1:+4282211 MS.gene069896:CDS
CTCGATGCCACTTCACCTAA+AGG 0.484376 2.1:-4281381 None:intergenic
TCGGTTGTGCAGGTTATCAC+TGG 0.485465 2.1:+4282046 MS.gene069896:intron
CACCATTGTTTATAGTTGGA+GGG 0.485721 2.1:-4282132 None:intergenic
TGCTGCACTTCACGCCTCGT+TGG 0.487112 2.1:+4282372 MS.gene069896:CDS
AGTGTCGCTGGGAGGTTACT+TGG 0.490122 2.1:+4282175 MS.gene069896:CDS
GGTCCTATGGGTGCAGGATG+CGG 0.491820 2.1:+4281408 MS.gene069896:CDS
GCCTTTACCTGGGAGTCTAT+AGG 0.493191 2.1:-4281558 None:intergenic
CTGCAACTGGATGTTTATAT+GGG 0.494351 2.1:-4279802 None:intergenic
ACAGGTGTTATTGGTTACAT+AGG 0.495552 2.1:+4279827 MS.gene069896:CDS
CATGGATGCTCTTCTCATGC+AGG 0.498944 2.1:+4279886 MS.gene069896:CDS
GCGTGAAGTGCAGCACCATA+AGG 0.500654 2.1:-4282364 None:intergenic
TAAAGACCAGCAGCCAATGT+TGG 0.501940 2.1:+4282210 MS.gene069896:CDS
TTTATAGTTGGAGGGGTGAA+AGG 0.503162 2.1:-4282124 None:intergenic
AACACTAGGAATTGTTGGAA+TGG 0.509127 2.1:+4280272 MS.gene069896:intron
GCATCGAGGTCTGGTCCTAT+GGG 0.518913 2.1:+4281396 MS.gene069896:CDS
ACCATTGTTTATAGTTGGAG+GGG 0.520447 2.1:-4282131 None:intergenic
CCAGACTCCGTCACAATTGG+TGG 0.521978 2.1:+4281808 MS.gene069896:CDS
CTCAGTTGAACGTCTTCCGT+CGG 0.522509 2.1:+4282303 MS.gene069896:CDS
AGGTCTGGTCCTATGGGTGC+AGG 0.526093 2.1:+4281402 MS.gene069896:CDS
TCAGTTGAACGTCTTCCGTC+GGG 0.526992 2.1:+4282304 MS.gene069896:CDS
TAACTTACCTTTAGGTGAAG+TGG 0.530297 2.1:+4281374 MS.gene069896:CDS
CCAAGGAGGAAGATGTATCC+AGG 0.534941 2.1:-4282268 None:intergenic
CGTAACAGACCTGCTCAATA+CGG 0.539232 2.1:-4281876 None:intergenic
TCAGCTCTTAGAGCTACAAA+AGG 0.540179 2.1:-4279863 None:intergenic
CATCTTCCTCCTTGGAATGG+AGG 0.550851 2.1:+4282276 MS.gene069896:CDS
GTAGGAAAGTTTCAAGGAGG+TGG 0.553060 2.1:+4281769 MS.gene069896:CDS
TGAAGCAGTAATAGGCGGCA+TGG 0.553848 2.1:+4281437 MS.gene069896:CDS
GTCGATAGCATGGTGAGGAA+TGG 0.554003 2.1:-4281472 None:intergenic
ATACATCTTCCTCCTTGGAA+TGG 0.562888 2.1:+4282273 MS.gene069896:CDS
CTCTCTCGTAAAAGCTCGGA+AGG 0.563335 2.1:-4281833 None:intergenic
GTGACTGTAGGAAAGTTTCA+AGG 0.563718 2.1:+4281763 MS.gene069896:CDS
TCTGAGACACCGTATTGAGC+AGG 0.567842 2.1:+4281867 MS.gene069896:CDS
CCAAAATGGGGTCGATAGCA+TGG 0.570431 2.1:-4281482 None:intergenic
AGCTCTCTCTCGTAAAAGCT+CGG 0.577468 2.1:-4281837 None:intergenic
TTGTAAGCTAACAACTACAT+TGG 0.577683 2.1:-4281511 None:intergenic
GCTCTTAGAGCTACAAAAGG+AGG 0.577911 2.1:-4279860 None:intergenic
GGTTGATCCTATAGACTCCC+AGG 0.579658 2.1:+4281551 MS.gene069896:CDS
AAGCAGTAATAGGCGGCATG+GGG 0.580948 2.1:+4281439 MS.gene069896:CDS
TTCTTTGAAGCAGTAATAGG+CGG 0.586767 2.1:+4281432 MS.gene069896:CDS
AAACCGCATCCTGCACCCAT+AGG 0.602311 2.1:-4281411 None:intergenic
TGTAGCTCTAAGAGCTGACA+TGG 0.605127 2.1:+4279868 MS.gene069896:CDS
CTGAGACATCCTCCATTCCA+AGG 0.607509 2.1:-4282285 None:intergenic
GCAGTAATAGGCGGCATGGG+GGG 0.611415 2.1:+4281441 MS.gene069896:CDS
AGCAGAAGAAGGAGGTGCCG+GGG 0.617076 2.1:+4281284 MS.gene069896:CDS
AAGTCTTCTGATCCCAACAT+TGG 0.621003 2.1:-4282223 None:intergenic
ACAACAAATTGTTTCTCGCG+AGG 0.626335 2.1:+4281530 MS.gene069896:CDS
TCCTCACAGGTTGTGACTGT+AGG 0.626736 2.1:+4281751 MS.gene069896:intron
AGGAGGTACCAGTAGTAGAG+AGG 0.628916 2.1:+4282422 MS.gene069896:CDS
CCTCCAACTATAAACAATGG+TGG 0.629763 2.1:+4282133 MS.gene069896:CDS
TTTCAACCAGCAGAAGAAGG+AGG 0.636316 2.1:+4281276 MS.gene069896:CDS
CATTGGAAGCCGCCAAAATG+GGG 0.636455 2.1:-4281494 None:intergenic
AAATAGGGTGAGTGTCCCGA+CGG 0.639877 2.1:-4282319 None:intergenic
GAAGGTGCCACCAATTGTGA+CGG 0.642404 2.1:-4281815 None:intergenic
ACCCCTCCAACTATAAACAA+TGG 0.660241 2.1:+4282130 MS.gene069896:CDS
TCTTGTCAAGCTTCATCAGG+AGG 0.670285 2.1:+4282405 MS.gene069896:CDS
AGCAGTAATAGGCGGCATGG+GGG 0.673730 2.1:+4281440 MS.gene069896:CDS
ATGGGGTCGATAGCATGGTG+AGG 0.695845 2.1:-4281477 None:intergenic
CTTTAGGTGAAGTGGCATCG+AGG 0.706888 2.1:+4281382 MS.gene069896:CDS
TCTGGAAAGATGCATGCATG+TGG 0.730506 2.1:+4280313 MS.gene069896:CDS
AGACATCCTCCATTCCAAGG+AGG 0.754048 2.1:-4282282 None:intergenic
ACTGTAGGAAAGTTTCAAGG+AGG 0.754125 2.1:+4281766 MS.gene069896:CDS
AAGATACCTAGAAGCCAACG+AGG 0.756349 2.1:-4282386 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTCAACTAAAAAAT+TGG - chr2.1:4280084-4280103 None:intergenic 10.0%
!! ATAACTTTAACATACAAAAT+TGG - chr2.1:4281143-4281162 None:intergenic 15.0%
!!! TTATTGATTTTTTTAACACT+AGG + chr2.1:4280258-4280277 MS.gene069896:intron 15.0%
!! AAAAAACTCAATTGCAAATT+TGG - chr2.1:4280169-4280188 None:intergenic 20.0%
!! ATCATTGTAAACAAATAATG+TGG - chr2.1:4281678-4281697 None:intergenic 20.0%
!! CGTGATATATTTAAATTATG+TGG - chr2.1:4280058-4280077 None:intergenic 20.0%
!!! ATCATTCCTTATTTTGTATA+GGG + chr2.1:4281237-4281256 MS.gene069896:intron 20.0%
!!! ATTTTAAAATATGCCAGTTT+TGG - chr2.1:4280117-4280136 None:intergenic 20.0%
!!! TACTGTTTTTCATCATTTTA+TGG + chr2.1:4281205-4281224 MS.gene069896:intron 20.0%
!!! TATCATTCCTTATTTTGTAT+AGG + chr2.1:4281236-4281255 MS.gene069896:intron 20.0%
! AACATAAATAATATCCTCAC+AGG + chr2.1:4281738-4281757 MS.gene069896:intron 25.0%
! ACTATTTGATCTGAATCTAA+CGG - chr2.1:4280839-4280858 None:intergenic 25.0%
! ATGAAAAAGAGTTACAAGTA+TGG + chr2.1:4280389-4280408 MS.gene069896:intron 25.0%
! ATTGTAAACAAATAATGTGG+CGG - chr2.1:4281675-4281694 None:intergenic 25.0%
! CAAAATAAGGAATGATATCA+CGG - chr2.1:4281233-4281252 None:intergenic 25.0%
! GGATATTATTTATGTTAGGA+AGG - chr2.1:4281734-4281753 None:intergenic 25.0%
! GTGAGGATATTATTTATGTT+AGG - chr2.1:4281738-4281757 None:intergenic 25.0%
! TAAGCTTATAAGAGCAAAAT+TGG + chr2.1:4279766-4279785 MS.gene069896:CDS 25.0%
!! TTTTTAACACTAGGAATTGT+TGG + chr2.1:4280267-4280286 MS.gene069896:intron 25.0%
!!! ACAGAATTCATGTTTGATTT+TGG - chr2.1:4281070-4281089 None:intergenic 25.0%
!!! CTGGCATATTTTAAAATAGA+AGG + chr2.1:4280120-4280139 MS.gene069896:intron 25.0%
!!! GTCACTACAATATCTTTTTT+TGG + chr2.1:4280551-4280570 MS.gene069896:intron 25.0%
!!! GTTGTATTTCTATTTCTATG+AGG + chr2.1:4280216-4280235 MS.gene069896:intron 25.0%
AAATTACCGAGCTTGAAATT+CGG + chr2.1:4280897-4280916 MS.gene069896:intron 30.0%
AACAGTAGAACAAGATAACT+TGG - chr2.1:4281192-4281211 None:intergenic 30.0%
AACTGAAAACTAAAACACTC+AGG - chr2.1:4279928-4279947 None:intergenic 30.0%
AAGACACACTATTTATGATG+TGG - chr2.1:4281933-4281952 None:intergenic 30.0%
AGAGCAAAATTGGATGAATT+AGG + chr2.1:4279776-4279795 MS.gene069896:CDS 30.0%
TAGAAAATTCTGAATGTCTG+AGG + chr2.1:4280755-4280774 MS.gene069896:intron 30.0%
TGTTTGAGGAAAACATTGTA+GGG + chr2.1:4281642-4281661 MS.gene069896:intron 30.0%
TTCAGCAATTTAATGATGCT+TGG - chr2.1:4280701-4280720 None:intergenic 30.0%
TTGAATATGATGAAAACCTG+AGG + chr2.1:4281700-4281719 MS.gene069896:intron 30.0%
TTGTAAGCTAACAACTACAT+TGG - chr2.1:4281514-4281533 None:intergenic 30.0%
! ATTTCTTGATAACTCAGTTC+AGG - chr2.1:4279737-4279756 None:intergenic 30.0%
! GAGCATAAAAGTAAAGTATC+TGG + chr2.1:4280295-4280314 MS.gene069896:CDS 30.0%
! GCTAAGAAAATTTTAGATGC+TGG + chr2.1:4281306-4281325 MS.gene069896:CDS 30.0%
! TTCAGTTGTGGATTTTATCT+TGG + chr2.1:4279941-4279960 MS.gene069896:intron 30.0%
!! ATCTAAAATTTTCTTAGCCC+CGG - chr2.1:4281304-4281323 None:intergenic 30.0%
!! ATCTTCGTTGACTTTGAAAT+AGG - chr2.1:4282338-4282357 None:intergenic 30.0%
!! TCTTCGTTGACTTTGAAATA+GGG - chr2.1:4282337-4282356 None:intergenic 30.0%
!! TTTATGTTAGGAAGGCATTT+AGG - chr2.1:4281726-4281745 None:intergenic 30.0%
!! TTTCTAGAACACAATTCACA+AGG - chr2.1:4280741-4280760 None:intergenic 30.0%
!!! AGTGTTTTAGTTTTCAGTTG+TGG + chr2.1:4279929-4279948 MS.gene069896:intron 30.0%
!!! TCCTTATTTTGTATAGGGAA+CGG + chr2.1:4281242-4281261 MS.gene069896:intron 30.0%
AACACTAGGAATTGTTGGAA+TGG + chr2.1:4280272-4280291 MS.gene069896:intron 35.0%
AACGAAGATTCACTTCCTTA+TGG + chr2.1:4282349-4282368 MS.gene069896:CDS 35.0%
AAGCCACCATTGTTTATAGT+TGG - chr2.1:4282139-4282158 None:intergenic 35.0%
ACACTAGGAATTGTTGGAAT+GGG + chr2.1:4280273-4280292 MS.gene069896:intron 35.0%
ACCATTGTTTATAGTTGGAG+GGG - chr2.1:4282134-4282153 None:intergenic 35.0%
ACCGTTCCCTATACAAAATA+AGG - chr2.1:4281246-4281265 None:intergenic 35.0%
ACTGCAACTGGATGTTTATA+TGG - chr2.1:4279806-4279825 None:intergenic 35.0%
ACTTCACCTAAAGGTAAGTT+AGG - chr2.1:4281375-4281394 None:intergenic 35.0%
AGGATAAGATTCCATAGAGT+TGG - chr2.1:4280970-4280989 None:intergenic 35.0%
CACCATTGTTTATAGTTGGA+GGG - chr2.1:4282135-4282154 None:intergenic 35.0%
CTGAAGGTTATGCACTTATA+CGG + chr2.1:4281010-4281029 MS.gene069896:intron 35.0%
CTGCAACTGGATGTTTATAT+GGG - chr2.1:4279805-4279824 None:intergenic 35.0%
CTGTTTGAGGAAAACATTGT+AGG + chr2.1:4281641-4281660 MS.gene069896:intron 35.0%
GAAAATGTCTCTGCCATATT+TGG + chr2.1:4281336-4281355 MS.gene069896:CDS 35.0%
GAAGGACTAAATCCACAAAA+TGG + chr2.1:4280138-4280157 MS.gene069896:intron 35.0%
GAATTTCAAGCTCGGTAATT+TGG - chr2.1:4280898-4280917 None:intergenic 35.0%
GATAAGATTCCATAGAGTTG+GGG - chr2.1:4280968-4280987 None:intergenic 35.0%
GCAATGACAGAATCAAACAA+TGG - chr2.1:4281606-4281625 None:intergenic 35.0%
GGATAAGATTCCATAGAGTT+GGG - chr2.1:4280969-4280988 None:intergenic 35.0%
GTTTGAGGAAAACATTGTAG+GGG + chr2.1:4281643-4281662 MS.gene069896:intron 35.0%
TAACTTACCTTTAGGTGAAG+TGG + chr2.1:4281374-4281393 MS.gene069896:CDS 35.0%
! AAACAAATAATGTGGCGGAA+TGG - chr2.1:4281670-4281689 None:intergenic 35.0%
! AATTTGGTCTCACCATTTTG+TGG - chr2.1:4280153-4280172 None:intergenic 35.0%
! GTTAACACATTGTTGACTGT+TGG - chr2.1:4280939-4280958 None:intergenic 35.0%
! GTTATTGGTTACATAGGAAC+TGG + chr2.1:4279833-4279852 MS.gene069896:CDS 35.0%
! TATGGCAGAGACATTTTCTA+AGG - chr2.1:4281334-4281353 None:intergenic 35.0%
! TGAATTTTCCTCTCTACTAC+TGG - chr2.1:4282433-4282452 None:intergenic 35.0%
!! ACAGGTGTTATTGGTTACAT+AGG + chr2.1:4279827-4279846 MS.gene069896:CDS 35.0%
!! AGAGGAGTATTGTGCTTTAA+AGG - chr2.1:4280990-4281009 None:intergenic 35.0%
!! GGTTTCTTTGAAGCAGTAAT+AGG + chr2.1:4281429-4281448 MS.gene069896:CDS 35.0%
!! TTCTTTGAAGCAGTAATAGG+CGG + chr2.1:4281432-4281451 MS.gene069896:CDS 35.0%
!!! ACTATTTTCAAAGTGTCGCT+GGG + chr2.1:4282164-4282183 MS.gene069896:CDS 35.0%
AAACATCCAGTTGCAGTTAC+AGG + chr2.1:4279809-4279828 MS.gene069896:CDS 40.0%
AAAGGAAATTTCGGTTGTGC+AGG + chr2.1:4282036-4282055 MS.gene069896:intron 40.0%
AAATTTCCTTTGAGCCTAGC+AGG - chr2.1:4282027-4282046 None:intergenic 40.0%
AAGTCTTCTGATCCCAACAT+TGG - chr2.1:4282226-4282245 None:intergenic 40.0%
ACCCCTCCAACTATAAACAA+TGG + chr2.1:4282130-4282149 MS.gene069896:CDS 40.0%
ACTGTAGGAAAGTTTCAAGG+AGG + chr2.1:4281766-4281785 MS.gene069896:CDS 40.0%
ATAACACCTGTAACTGCAAC+TGG - chr2.1:4279818-4279837 None:intergenic 40.0%
ATACATCTTCCTCCTTGGAA+TGG + chr2.1:4282273-4282292 MS.gene069896:CDS 40.0%
ATGAGTTGTAAGCCTTTACC+TGG - chr2.1:4281572-4281591 None:intergenic 40.0%
CAAACAGCCACAATACTCTT+TGG - chr2.1:4281628-4281647 None:intergenic 40.0%
CCACCATTGTTTATAGTTGG+AGG - chr2.1:4282136-4282155 None:intergenic 40.0%
CCTCCAACTATAAACAATGG+TGG + chr2.1:4282133-4282152 MS.gene069896:CDS 40.0%
GATTGTCCGAATTTCAAGCT+CGG - chr2.1:4280906-4280925 None:intergenic 40.0%
GCTAGGCTCAAAGGAAATTT+CGG + chr2.1:4282027-4282046 MS.gene069896:intron 40.0%
GTATCTTGTCAAGCTTCATC+AGG + chr2.1:4282402-4282421 MS.gene069896:CDS 40.0%
GTGACTGTAGGAAAGTTTCA+AGG + chr2.1:4281763-4281782 MS.gene069896:CDS 40.0%
GTTGACTGTTGGATCAAGAT+CGG - chr2.1:4280928-4280947 None:intergenic 40.0%
TAACGCTCACCAATTCACTA+TGG - chr2.1:4280800-4280819 None:intergenic 40.0%
TAAGACGAAGAGACCAAAAC+TGG + chr2.1:4280101-4280120 MS.gene069896:intron 40.0%
TAAGTGCATAACCTTCAGAG+AGG - chr2.1:4281008-4281027 None:intergenic 40.0%
TCAGCTCTTAGAGCTACAAA+AGG - chr2.1:4279866-4279885 None:intergenic 40.0%
TCTGAATCTAACGGTCATCA+AGG - chr2.1:4280830-4280849 None:intergenic 40.0%
TGAGTTGTAAGCCTTTACCT+GGG - chr2.1:4281571-4281590 None:intergenic 40.0%
TGCGACATGCAATCCAAATA+TGG - chr2.1:4281352-4281371 None:intergenic 40.0%
TGGCATGAGCACTCAAAATT+TGG - chr2.1:4281123-4281142 None:intergenic 40.0%
TTTATAGTTGGAGGGGTGAA+AGG - chr2.1:4282127-4282146 None:intergenic 40.0%
! ACAACAAATTGTTTCTCGCG+AGG + chr2.1:4281530-4281549 MS.gene069896:CDS 40.0%
! GTTGCAGTTACAGGTGTTAT+TGG + chr2.1:4279818-4279837 MS.gene069896:CDS 40.0%
! TATGGGTTGCCATAGTGAAT+TGG + chr2.1:4280788-4280807 MS.gene069896:intron 40.0%
!! AAGAGTATTGTGGCTGTTTG+AGG + chr2.1:4281628-4281647 MS.gene069896:intron 40.0%
!! ACTCTTTTTCATGCTGCTTG+AGG - chr2.1:4280381-4280400 None:intergenic 40.0%
!! GTCATTGCCAAAGAGTATTG+TGG + chr2.1:4281618-4281637 MS.gene069896:intron 40.0%
!! GTTTTTCAACCAGCAGAAGA+AGG + chr2.1:4281273-4281292 MS.gene069896:CDS 40.0%
!!! GACTATTTTCAAAGTGTCGC+TGG + chr2.1:4282163-4282182 MS.gene069896:CDS 40.0%
AAAGACCAGCAGCCAATGTT+GGG + chr2.1:4282211-4282230 MS.gene069896:CDS 45.0%
AACTGTGTACCCCAACTCTA+TGG + chr2.1:4280956-4280975 MS.gene069896:intron 45.0%
AAGATACCTAGAAGCCAACG+AGG - chr2.1:4282389-4282408 None:intergenic 45.0%
ACATTGGAAGCCGCCAAAAT+GGG - chr2.1:4281498-4281517 None:intergenic 45.0%
AGCACAATACTCCTCTCTGA+AGG + chr2.1:4280994-4281013 MS.gene069896:intron 45.0%
AGCTCTCTCTCGTAAAAGCT+CGG - chr2.1:4281840-4281859 None:intergenic 45.0%
ATCTAACGGTCATCAAGGCA+CGG - chr2.1:4280825-4280844 None:intergenic 45.0%
ATTCCAGACTCCGTCACAAT+TGG + chr2.1:4281805-4281824 MS.gene069896:CDS 45.0%
CGTAACAGACCTGCTCAATA+CGG - chr2.1:4281879-4281898 None:intergenic 45.0%
GCTCATGTTGCTATGCTTCT+TGG + chr2.1:4280343-4280362 MS.gene069896:CDS 45.0%
GCTCTTAGAGCTACAAAAGG+AGG - chr2.1:4279863-4279882 None:intergenic 45.0%
GTAGGAAAGTTTCAAGGAGG+TGG + chr2.1:4281769-4281788 MS.gene069896:CDS 45.0%
GTCGCACCTAACTTACCTTT+AGG + chr2.1:4281366-4281385 MS.gene069896:CDS 45.0%
GTTATCACTGAGATCCTGCT+AGG + chr2.1:4282010-4282029 MS.gene069896:intron 45.0%
TAAAGACCAGCAGCCAATGT+TGG + chr2.1:4282210-4282229 MS.gene069896:CDS 45.0%
TACATTGGAAGCCGCCAAAA+TGG - chr2.1:4281499-4281518 None:intergenic 45.0%
TCCTATAGACTCCCAGGTAA+AGG + chr2.1:4281557-4281576 MS.gene069896:intron 45.0%
TCTGGAAAGATGCATGCATG+TGG + chr2.1:4280313-4280332 MS.gene069896:CDS 45.0%
TCTTGTCAAGCTTCATCAGG+AGG + chr2.1:4282405-4282424 MS.gene069896:CDS 45.0%
TTTCAACCAGCAGAAGAAGG+AGG + chr2.1:4281276-4281295 MS.gene069896:CDS 45.0%
! TCTGAGGCTGATGTGGATAT+GGG + chr2.1:4280771-4280790 MS.gene069896:intron 45.0%
!! TGAAAGGCGTCTCTTCTTCA+AGG - chr2.1:4282111-4282130 None:intergenic 45.0%
!! TGTAGCTCTAAGAGCTGACA+TGG + chr2.1:4279868-4279887 MS.gene069896:CDS 45.0%
!!! ATTTTCAAAGTGTCGCTGGG+AGG + chr2.1:4282167-4282186 MS.gene069896:CDS 45.0%
AAATAGGGTGAGTGTCCCGA+CGG - chr2.1:4282322-4282341 None:intergenic 50.0%
AAGCAGTAATAGGCGGCATG+GGG + chr2.1:4281439-4281458 MS.gene069896:CDS 50.0%
AGACATCCTCCATTCCAAGG+AGG - chr2.1:4282285-4282304 None:intergenic 50.0%
AGGCAACGCTGCTTGATAGA+AGG - chr2.1:4282251-4282270 None:intergenic 50.0%
CATCTTCCTCCTTGGAATGG+AGG + chr2.1:4282276-4282295 MS.gene069896:CDS 50.0%
CATGGATGCTCTTCTCATGC+AGG + chr2.1:4279886-4279905 MS.gene069896:CDS 50.0%
CATTGGAAGCCGCCAAAATG+GGG - chr2.1:4281497-4281516 None:intergenic 50.0%
CCAAAATGGGGTCGATAGCA+TGG - chr2.1:4281485-4281504 None:intergenic 50.0%
CCAAGGAGGAAGATGTATCC+AGG - chr2.1:4282271-4282290 None:intergenic 50.0%
CCTGGATACATCTTCCTCCT+TGG + chr2.1:4282268-4282287 MS.gene069896:CDS 50.0%
CTCAGTTGAACGTCTTCCGT+CGG + chr2.1:4282303-4282322 MS.gene069896:CDS 50.0%
CTCTCTCGTAAAAGCTCGGA+AGG - chr2.1:4281836-4281855 None:intergenic 50.0%
CTGAGACATCCTCCATTCCA+AGG - chr2.1:4282288-4282307 None:intergenic 50.0%
CTTTAGGTGAAGTGGCATCG+AGG + chr2.1:4281382-4281401 MS.gene069896:CDS 50.0%
GAAGCAGTAATAGGCGGCAT+GGG + chr2.1:4281438-4281457 MS.gene069896:CDS 50.0%
GCCTTTACCTGGGAGTCTAT+AGG - chr2.1:4281561-4281580 None:intergenic 50.0%
GGTTGATCCTATAGACTCCC+AGG + chr2.1:4281551-4281570 MS.gene069896:CDS 50.0%
GTCGATAGCATGGTGAGGAA+TGG - chr2.1:4281475-4281494 None:intergenic 50.0%
TCAGTTGAACGTCTTCCGTC+GGG + chr2.1:4282304-4282323 MS.gene069896:CDS 50.0%
TCCTACAGTCACAACCTGTG+AGG - chr2.1:4281755-4281774 None:intergenic 50.0%
TCCTCACAGGTTGTGACTGT+AGG + chr2.1:4281751-4281770 MS.gene069896:intron 50.0%
TCGGTTGTGCAGGTTATCAC+TGG + chr2.1:4282046-4282065 MS.gene069896:intron 50.0%
TGAAGCAGTAATAGGCGGCA+TGG + chr2.1:4281437-4281456 MS.gene069896:CDS 50.0%
TGAGATCCTGCTAGGCTCAA+AGG + chr2.1:4282018-4282037 MS.gene069896:intron 50.0%
TTCTATCAAGCAGCGTTGCC+TGG + chr2.1:4282250-4282269 MS.gene069896:CDS 50.0%
! CCATGCTATCGACCCCATTT+TGG + chr2.1:4281482-4281501 MS.gene069896:CDS 50.0%
! CTCGATGCCACTTCACCTAA+AGG - chr2.1:4281384-4281403 None:intergenic 50.0%
! CTGAATGTCTGAGGCTGATG+TGG + chr2.1:4280764-4280783 MS.gene069896:intron 50.0%
! GTCTGAGGCTGATGTGGATA+TGG + chr2.1:4280770-4280789 MS.gene069896:intron 50.0%
! TCTGAGACACCGTATTGAGC+AGG + chr2.1:4281867-4281886 MS.gene069896:CDS 50.0%
! TGCTATCGACCCCATTTTGG+CGG + chr2.1:4281485-4281504 MS.gene069896:CDS 50.0%
!! AGGAGGTACCAGTAGTAGAG+AGG + chr2.1:4282422-4282441 MS.gene069896:CDS 50.0%
!! GAAGGTGCCACCAATTGTGA+CGG - chr2.1:4281818-4281837 None:intergenic 50.0%
!! TAGGAAGGCATTTAGGCCTC+AGG - chr2.1:4281719-4281738 None:intergenic 50.0%
AAACCGCATCCTGCACCCAT+AGG - chr2.1:4281414-4281433 None:intergenic 55.0%
AGCAGTAATAGGCGGCATGG+GGG + chr2.1:4281440-4281459 MS.gene069896:CDS 55.0%
ATGGGGTCGATAGCATGGTG+AGG - chr2.1:4281480-4281499 None:intergenic 55.0%
CCAGACTCCGTCACAATTGG+TGG + chr2.1:4281808-4281827 MS.gene069896:CDS 55.0%
GCATCGAGGTCTGGTCCTAT+GGG + chr2.1:4281396-4281415 MS.gene069896:CDS 55.0%
GCGTGAAGTGCAGCACCATA+AGG - chr2.1:4282367-4282386 None:intergenic 55.0%
! AGTGTCGCTGGGAGGTTACT+TGG + chr2.1:4282175-4282194 MS.gene069896:CDS 55.0%
! CCACCAATTGTGACGGAGTC+TGG - chr2.1:4281811-4281830 None:intergenic 55.0%
! CTGATCCCAACATTGGCTGC+TGG - chr2.1:4282219-4282238 None:intergenic 55.0%
!! TTCACGCCTCGTTGGCTTCT+AGG + chr2.1:4282380-4282399 MS.gene069896:CDS 55.0%
AGGTCTGGTCCTATGGGTGC+AGG + chr2.1:4281402-4281421 MS.gene069896:CDS 60.0%
GCAGTAATAGGCGGCATGGG+GGG + chr2.1:4281441-4281460 MS.gene069896:CDS 60.0%
GGTCCTATGGGTGCAGGATG+CGG + chr2.1:4281408-4281427 MS.gene069896:CDS 60.0%
TGCTGCACTTCACGCCTCGT+TGG + chr2.1:4282372-4282391 MS.gene069896:CDS 60.0%
! CCAGCAGAAGAAGGAGGTGC+CGG + chr2.1:4281282-4281301 MS.gene069896:CDS 60.0%
! GGCATCGAGGTCTGGTCCTA+TGG + chr2.1:4281395-4281414 MS.gene069896:CDS 60.0%
! GGTGAAGTGGCATCGAGGTC+TGG + chr2.1:4281387-4281406 MS.gene069896:CDS 60.0%
!! AGCAGAAGAAGGAGGTGCCG+GGG + chr2.1:4281284-4281303 MS.gene069896:CDS 60.0%
!! CAGCAGAAGAAGGAGGTGCC+GGG + chr2.1:4281283-4281302 MS.gene069896:CDS 60.0%
ATAGGCGGCATGGGGGGTCA+TGG + chr2.1:4281447-4281466 MS.gene069896:CDS 65.0%
CCGGCACCTCCTTCTTCTGC+TGG - chr2.1:4281285-4281304 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 4279701 4282465 4279701 ID=MS.gene069896
chr2.1 mRNA 4279701 4282465 4279701 ID=MS.gene069896.t1;Parent=MS.gene069896
chr2.1 exon 4279701 4279907 4279701 ID=MS.gene069896.t1.exon1;Parent=MS.gene069896.t1
chr2.1 CDS 4279701 4279907 4279701 ID=cds.MS.gene069896.t1;Parent=MS.gene069896.t1
chr2.1 exon 4280280 4280405 4280280 ID=MS.gene069896.t1.exon2;Parent=MS.gene069896.t1
chr2.1 CDS 4280280 4280405 4280280 ID=cds.MS.gene069896.t1;Parent=MS.gene069896.t1
chr2.1 exon 4281258 4281572 4281258 ID=MS.gene069896.t1.exon3;Parent=MS.gene069896.t1
chr2.1 CDS 4281258 4281572 4281258 ID=cds.MS.gene069896.t1;Parent=MS.gene069896.t1
chr2.1 exon 4281760 4281888 4281760 ID=MS.gene069896.t1.exon4;Parent=MS.gene069896.t1
chr2.1 CDS 4281760 4281888 4281760 ID=cds.MS.gene069896.t1;Parent=MS.gene069896.t1
chr2.1 exon 4282058 4282465 4282058 ID=MS.gene069896.t1.exon5;Parent=MS.gene069896.t1
chr2.1 CDS 4282058 4282465 4282058 ID=cds.MS.gene069896.t1;Parent=MS.gene069896.t1
Gene Sequence

>MS.gene069896

ATGGTGTGGATAAGGAGAAAAATTCATGAGAATCCTGAACTGAGTTATCAAGAAATTAAAACTAGTAAGCTTATAAGAGCAAAATTGGATGAATTAGGTGTCCCATATAAACATCCAGTTGCAGTTACAGGTGTTATTGGTTACATAGGAACTGGTCTTCCTCCTTTTGTAGCTCTAAGAGCTGACATGGATGCTCTTCTCATGCAGGTCTACATTTTTTTTTTCCTGAGTGTTTTAGTTTTCAGTTGTGGATTTTATCTTGGTTTTCTATATCACATGTTTTAAATGAAGTTTTCAAGAGAATTTTCTAACAATTTTATCGACGTTCATATTTCTCAATCATCAAATCATATACCACATAATTTAAATATATCACGTCACCAATTTTTTAGTTGAAAAATAAGACGAAGAGACCAAAACTGGCATATTTTAAAATAGAAGGACTAAATCCACAAAATGGTGAGACCAAATTTGCAATTGAGTTTTTTCTTTTTTGTTGCAATTTTTTTGTTTGTGTTGTATTTCTATTTCTATGAGGATAATGTTTAATCTATATTTTATTGATTTTTTTAACACTAGGAATTGTTGGAATGGGAGCATAAAAGTAAAGTATCTGGAAAGATGCATGCATGTGGTCATGATGCTCATGTTGCTATGCTTCTTGGTGCTGCAAAGATCCTCAAGCAGCATGAAAAAGAGTTACAAGTATGGTTTTTCACTTCTTTTTATTATTTTTTTATTTATTTTTTAGATGCATTCTCTTCAATATATGAGATTTCTTCATGCTCTGCTATTATTTTTATGCTTTCTTTAATGTACTGCTTTTGAAATAAATTTGAAATATGATGAAGTCACTACAATATCTTTTTTTGGTTTGAGAAAAAAGTTTTCTATATGCATTTTCAGTTTTTATTTTCAATTGCAAAAATGTTATCTTGTTTTTTACTTTGTTTTACTTTATTTTCAATTGAAAAAAAAGTAGTGTTATGTATTCAAACCAAGCATCATTAAATTGCTGAAACTACAAACATTATGAACCTTGTGAATTGTGTTCTAGAAAATTCTGAATGTCTGAGGCTGATGTGGATATGGGTTGCCATAGTGAATTGGTGAGCGTTAGTCCGTGCCTTGATGACCGTTAGATTCAGATCAAATAGTTCACAAAATATGCGAATTTTGTTCTTTTTTTAAAATCCAAATTACCGAGCTTGAAATTCGGACAATCCGATCTTGATCCAACAGTCAACAATGTGTTAACTGTGTACCCCAACTCTATGGAATCTTATCCTTTAAAGCACAATACTCCTCTCTGAAGGTTATGCACTTATACGGTTTAAGATATTTCTGTGTTTTCAATTCAATCATGCCAAAATCAAACATGAATTCTGTTTTTTACATTTGTATATTTGCAAACTAAAGCCAAATTTTGAGTGCTCATGCCAATTTTGTATGTTAAAGTTATTCTGCATATCATATTTTTCTTTCTTTCCAAGTTATCTTGTTCTACTGTTTTTCATCATTTTATGGATCCGTGATATCATTCCTTATTTTGTATAGGGAACGGTTGTTCTTGTTTTTCAACCAGCAGAAGAAGGAGGTGCCGGGGCTAAGAAAATTTTAGATGCTGGAGCCTTAGAAAATGTCTCTGCCATATTTGGATTGCATGTCGCACCTAACTTACCTTTAGGTGAAGTGGCATCGAGGTCTGGTCCTATGGGTGCAGGATGCGGTTTCTTTGAAGCAGTAATAGGCGGCATGGGGGGTCATGGAGCCATTCCTCACCATGCTATCGACCCCATTTTGGCGGCTTCCAATGTAGTTGTTAGCTTACAACAAATTGTTTCTCGCGAGGTTGATCCTATAGACTCCCAGGTAAAGGCTTACAACTCATGATTGTTTGCACCATTGTTTGATTCTGTCATTGCCAAAGAGTATTGTGGCTGTTTGAGGAAAACATTGTAGGGGACCATTCCGCCACATTATTTGTTTACAATGATTTTTGAATATGATGAAAACCTGAGGCCTAAATGCCTTCCTAACATAAATAATATCCTCACAGGTTGTGACTGTAGGAAAGTTTCAAGGAGGTGGTGCATTCAATGTTATTCCAGACTCCGTCACAATTGGTGGCACCTTCCGAGCTTTTACGAGAGAGAGCTTCACGCATCTGAGACACCGTATTGAGCAGGTCTGTTACGAAGAATAAGTTCTTAATGAGCTCTATTTTTTCCACATCATAAATAGTGTGTCTTATTCTTATTTGTTGATATACAAATTGTCAGTATATAAATTATATCTATCTTGTTTTAGTTATCACTGAGATCCTGCTAGGCTCAAAGGAAATTTCGGTTGTGCAGGTTATCACTGGACAAGCTGCTGTGCATAGATGCAATGCAACAGTCAGTTTCCTTGAAGAAGAGACGCCTTTCACCCCTCCAACTATAAACAATGGTGGCTTGCATGACTATTTTCAAAGTGTCGCTGGGAGGTTACTTGGTGTTGATAAAGTTAAAGACCAGCAGCCAATGTTGGGATCAGAAGACTTCGCCTTCTATCAAGCAGCGTTGCCTGGATACATCTTCCTCCTTGGAATGGAGGATGTCTCAGTTGAACGTCTTCCGTCGGGACACTCACCCTATTTCAAAGTCAACGAAGATTCACTTCCTTATGGTGCTGCACTTCACGCCTCGTTGGCTTCTAGGTATCTTGTCAAGCTTCATCAGGAGGTACCAGTAGTAGAGAGGAAAATTCATGATGAATTATAA
Protein sequence

>MS.gene069896.t1

MVWIRRKIHENPELSYQEIKTSKLIRAKLDELGVPYKHPVAVTGVIGYIGTGLPPFVALRADMDALLMQELLEWEHKSKVSGKMHACGHDAHVAMLLGAAKILKQHEKELQGTVVLVFQPAEEGGAGAKKILDAGALENVSAIFGLHVAPNLPLGEVASRSGPMGAGCGFFEAVIGGMGGHGAIPHHAIDPILAASNVVVSLQQIVSREVDPIDSQVVTVGKFQGGGAFNVIPDSVTIGGTFRAFTRESFTHLRHRIEQVITGQAAVHRCNATVSFLEEETPFTPPTINNGGLHDYFQSVAGRLLGVDKVKDQQPMLGSEDFAFYQAALPGYIFLLGMEDVSVERLPSGHSPYFKVNEDSLPYGAALHASLASRYLVKLHQEVPVVERKIHDEL