AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene069898

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069898.t1 MTR_2g100510 91.723 447 36 1 1 446 1 447 0.0 823
MS.gene069898.t1 MTR_2g097530 85.459 447 64 1 1 446 1 447 0.0 750
MS.gene069898.t1 MTR_2g100520 82.550 447 77 1 1 446 1 447 0.0 749
MS.gene069898.t1 MTR_2g100560 85.714 448 62 1 1 446 5 452 0.0 748
MS.gene069898.t1 MTR_2g097540 82.287 446 76 1 1 446 1 443 0.0 745
MS.gene069898.t1 MTR_8g015510 69.799 447 127 5 4 446 5 447 0.0 615
MS.gene069898.t1 MTR_8g015510 72.171 327 88 3 123 446 1 327 6.46e-162 459
MS.gene069898.t1 MTR_3g088590 55.928 388 171 0 41 428 85 472 6.27e-161 463
MS.gene069898.t1 MTR_8g062790 54.157 421 190 2 8 427 6 424 4.63e-159 456
MS.gene069898.t1 MTR_8g075310 53.222 419 175 5 10 424 12 413 2.83e-147 426
MS.gene069898.t1 MTR_3g093030 47.971 419 209 2 10 428 6 415 3.55e-141 410
MS.gene069898.t1 MTR_2g100550 87.654 162 17 1 1 162 1 159 1.91e-88 281
MS.gene069898.t1 MTR_8g063060 45.098 306 136 8 121 423 58 334 1.83e-72 233
MS.gene069898.t1 MTR_1g028070 69.298 114 35 0 154 267 14 127 2.20e-47 159
MS.gene069898.t1 MTR_3g077040 51.493 134 41 2 136 269 1 110 2.51e-32 119
MS.gene069898.t1 MTR_2g100530 76.786 56 13 0 391 446 14 69 3.71e-22 90.1
MS.gene069898.t1 MTR_1205s0010 31.548 168 109 3 250 416 1 163 6.02e-20 87.0
MS.gene069898.t1 MTR_3g093040 44.554 101 46 1 136 226 1 101 2.29e-18 85.9
MS.gene069898.t1 MTR_8g062090 50.877 114 18 3 162 269 29 110 1.59e-17 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069898.t1 AT1G51760 69.907 432 123 3 1 431 1 426 0.0 629
MS.gene069898.t1 AT1G51780 65.116 430 143 3 1 429 1 424 0.0 567
MS.gene069898.t1 AT5G56660 62.821 390 142 2 39 428 37 423 0.0 518
MS.gene069898.t1 AT5G56650 63.077 390 141 2 39 428 36 422 2.07e-179 508
MS.gene069898.t1 AT5G56650 68.310 284 87 2 31 313 27 308 4.36e-138 399
MS.gene069898.t1 AT3G02875 50.900 389 191 0 40 428 39 427 5.38e-137 400
MS.gene069898.t1 AT1G44350 50.886 395 189 1 39 433 75 464 1.19e-136 400
MS.gene069898.t1 AT5G54140 49.868 379 189 1 51 428 39 417 1.62e-132 389
MS.gene069898.t1 AT3G02875 55.515 272 121 0 41 312 40 311 8.13e-106 317
MS.gene069898.t1 AT3G02875 56.957 230 99 0 40 269 39 268 2.17e-90 277

Find 111 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATCAATCCCAAAGTTTC+TGG 0.125023 2.1:+4290614 MS.gene069898:CDS
GAAAATGTCTCTGCCATATT+TGG 0.135934 2.1:+4292762 MS.gene069898:CDS
CACCTAAAGGTAAGTTATTT+AGG 0.196492 2.1:-4292794 None:intergenic
CACATTGGAAGTTGCCAATA+TGG 0.228196 2.1:-4292922 None:intergenic
GCTCATGTTGCTATGCTTCT+TGG 0.234508 2.1:+4291094 MS.gene069898:CDS
TTGCATGCCTTTAACTTTAT+CGG 0.250948 2.1:-4294639 None:intergenic
TTCATGCATCATTAGCTTCT+AGG 0.252610 2.1:+4294819 MS.gene069898:CDS
CTTGGCGCCGATAAAGTTAA+AGG 0.263393 2.1:+4294632 MS.gene069898:CDS
ATCTTCGTTGACTTTGAAAT+AGG 0.270714 2.1:-4294774 None:intergenic
CTTTAGGTGAAGTGGCTTCT+AGG 0.272403 2.1:+4292808 MS.gene069898:CDS
TAAGCTTATAAGAACAAAAT+TGG 0.272704 2.1:+4290734 MS.gene069898:CDS
ACTGCAACTGGATGTTTATA+TGG 0.283261 2.1:-4290771 None:intergenic
GTTGCAGTGACAGGTGTTAT+TGG 0.296181 2.1:+4290786 MS.gene069898:CDS
TGTTGCTCTTAGAGCTGATA+TGG 0.302889 2.1:+4290836 MS.gene069898:CDS
GATCCATGGGTTTCTTCAAA+TGG 0.304569 2.1:+4290508 None:intergenic
TTGATTGGATGGTTGATATA+AGG 0.308095 2.1:+4290661 MS.gene069898:CDS
ATGCAAGCCACCATTGTTTA+CGG 0.321533 2.1:-4294579 None:intergenic
AGAACAAAATTGGATGAATT+AGG 0.334989 2.1:+4290744 MS.gene069898:CDS
TATGGATGCTCTCCTTATTC+AGG 0.340492 2.1:+4290854 MS.gene069898:CDS
AGGTCTGGTCCTATATTTGC+AGG 0.341279 2.1:+4292828 MS.gene069898:CDS
CCACCAATTGTGACAGAGTC+TGG 0.344591 2.1:-4293455 None:intergenic
TGGCTAATTCCAGAAACTTT+GGG 0.350018 2.1:-4290623 None:intergenic
AAGCCATTGCCTGCAAATAT+AGG 0.352594 2.1:-4292837 None:intergenic
TTGGCTAATTCCAGAAACTT+TGG 0.361743 2.1:-4290624 None:intergenic
CCACCACCTCCTTCTTCTGC+TGG 0.366853 2.1:-4292708 None:intergenic
TAGGACATGCAATCCAAATA+TGG 0.370327 2.1:-4292775 None:intergenic
AATTCTTCATAACCAAGTTC+AGG 0.371040 2.1:-4290702 None:intergenic
TCTTCGTTGACTTTGAAATA+GGG 0.375069 2.1:-4294773 None:intergenic
GTCCTAAATAACTTACCTTT+AGG 0.377975 2.1:+4292792 MS.gene069898:CDS
ATAACACCTGTCACTGCAAC+TGG 0.378254 2.1:-4290783 None:intergenic
TAAAGGCATGCAACCGATGA+TGG 0.399437 2.1:+4294649 MS.gene069898:CDS
GGTGAAGTGGCTTCTAGGTC+TGG 0.399799 2.1:+4292813 MS.gene069898:CDS
CCACATGCATGCATCTTTCC+AGG 0.416417 2.1:-4291064 None:intergenic
GATTGATCCCCTTGACTCTC+AGG 0.423067 2.1:+4292977 MS.gene069898:CDS
GTTATTGGTTACATAGGAAC+TGG 0.430657 2.1:+4290801 MS.gene069898:CDS
ACATTGGAAGTTGCCAATAT+GGG 0.436989 2.1:-4292921 None:intergenic
TTCTATCAAGAGGCTATGCC+TGG 0.441380 2.1:+4294689 MS.gene069898:CDS
ACATTCTATAGACCCCATAT+TGG 0.441418 2.1:+4292908 MS.gene069898:CDS
CATTTAGGAATTGGTGGAGT+GGG 0.444675 2.1:+4291024 MS.gene069898:intron
CCACCATTGTTTACGGTTGG+AGG 0.445217 2.1:-4294572 None:intergenic
ATCCATGGGTTTCTTCAAAT+GGG 0.449200 2.1:+4290509 None:intergenic
AGTGTCGCCGGGAGTTTGCT+TGG 0.458076 2.1:+4294614 MS.gene069898:CDS
ATTCCAGACTCTGTCACAAT+TGG 0.459091 2.1:+4293452 MS.gene069898:CDS
GTATCTGCTCAAATTGCATC+AGG 0.476322 2.1:+4294841 MS.gene069898:CDS
AGAAAGACTTCTCTTCTTCA+AGG 0.478302 2.1:-4294547 None:intergenic
TTAAAGCAGTAATAAGCGGC+AGG 0.482496 2.1:+4292862 MS.gene069898:CDS
TCATTGATGTAGATTATCAC+TGG 0.486477 2.1:+4294485 MS.gene069898:intron
CCAGCAGAAGAAGGAGGTGG+TGG 0.487742 2.1:+4292708 MS.gene069898:CDS
AACGAAGATGCACTTCCTTA+CGG 0.498146 2.1:+4294788 MS.gene069898:CDS
CTAGAAGCCACTTCACCTAA+AGG 0.501909 2.1:-4292807 None:intergenic
CTGCAACTGGATGTTTATAT+GGG 0.502686 2.1:-4290770 None:intergenic
GGTCCTATATTTGCAGGCAA+TGG 0.503771 2.1:+4292834 MS.gene069898:CDS
TAACTTACCTTTAGGTGAAG+TGG 0.503980 2.1:+4292800 MS.gene069898:CDS
CCAGACTCTGTCACAATTGG+TGG 0.504423 2.1:+4293455 MS.gene069898:CDS
TTGACTGTAGCAATGATTCA+AGG 0.505434 2.1:+4293410 MS.gene069898:CDS
GTGGTCATTTGAAGTGGAAG+AGG 0.507634 2.1:-4290592 None:intergenic
CGATATTTCCCCACTACTAC+CGG 0.511619 2.1:-4294869 None:intergenic
ATTCATGAGAATCCTGAACT+TGG 0.516390 2.1:+4290690 MS.gene069898:CDS
AAACATCCAGTTGCAGTGAC+AGG 0.518282 2.1:+4290777 MS.gene069898:CDS
GAAACTTTGGGATTGATAAG+TGG 0.521225 2.1:-4290611 None:intergenic
ACAGGTGTTATTGGTTACAT+AGG 0.522130 2.1:+4290795 MS.gene069898:CDS
CCGAGGAGGAATATGTATCC+AGG 0.527098 2.1:-4294707 None:intergenic
TGATAAGTGGTCATTTGAAG+TGG 0.531029 2.1:-4290598 None:intergenic
GCATGAAGTGCAGCGCCGTA+AGG 0.538872 2.1:-4294803 None:intergenic
GATGTTTACCTGAGAGTCAA+GGG 0.542271 2.1:-4292985 None:intergenic
CAAATTGCATCAGGAGGTAC+CGG 0.542512 2.1:+4294850 MS.gene069898:CDS
ATCGGCGCCAAGCAAACTCC+CGG 0.548375 2.1:-4294621 None:intergenic
AAAGGCATGCAACCGATGAT+GGG 0.549067 2.1:+4294650 MS.gene069898:CDS
ATACATATTCCTCCTCGGAA+TGG 0.552217 2.1:+4294712 MS.gene069898:CDS
AAGCCACCATTGTTTACGGT+TGG 0.552931 2.1:-4294575 None:intergenic
CACCATTGTTTACGGTTGGA+GGG 0.553773 2.1:-4294571 None:intergenic
ACTGAGACACCGCATTGAGC+AGG 0.554810 2.1:+4293514 MS.gene069898:CDS
TCAGTTGAACATCTTCCGTC+GGG 0.557198 2.1:+4294743 MS.gene069898:CDS
ATTGGATGGTTGATATAAGG+AGG 0.557920 2.1:+4290664 MS.gene069898:CDS
TCAGCTCTAAGAGCAACAAA+AGG 0.559301 2.1:-4290831 None:intergenic
AGACTTTGCATTCTATCAAG+AGG 0.559534 2.1:+4294679 MS.gene069898:CDS
CTCAGTTGAACATCTTCCGT+CGG 0.561751 2.1:+4294742 MS.gene069898:CDS
CAGGAGGTACCGGTAGTAGT+GGG 0.563313 2.1:+4294860 MS.gene069898:CDS
CAGCAGAAGAAGGAGGTGGT+GGG 0.577188 2.1:+4292709 MS.gene069898:CDS
GCTCTAAGAGCAACAAAAGG+AGG 0.577757 2.1:-4290828 None:intergenic
CCTGGATACATATTCCTCCT+CGG 0.577905 2.1:+4294707 MS.gene069898:CDS
CAAGGAAGCTGACTGTTGCA+TGG 0.578278 2.1:-4294529 None:intergenic
AGATGTTTACCTGAGAGTCA+AGG 0.578610 2.1:-4292986 None:intergenic
AAGTCTTCTGATCCCATCAT+CGG 0.585289 2.1:-4294662 None:intergenic
CAACCAGCAGAAGAAGGAGG+TGG 0.586751 2.1:+4292705 MS.gene069898:CDS
TCAGGAGGTACCGGTAGTAG+TGG 0.592007 2.1:+4294859 MS.gene069898:CDS
TTCTTTAAAGCAGTAATAAG+CGG 0.596096 2.1:+4292858 MS.gene069898:CDS
AGCAGAAGAAGGAGGTGGTG+GGG 0.597355 2.1:+4292710 MS.gene069898:CDS
GAGCATAAGAGTAAAGTACC+TGG 0.604715 2.1:+4291046 MS.gene069898:CDS
GACCCATTTGAAGAAACCCA+TGG 0.604793 2.1:-4290511 None:intergenic
GCATTTAGGAATTGGTGGAG+TGG 0.605092 2.1:+4291023 MS.gene069898:intron
GTAGCAATGATTCAAGGAGG+TGG 0.610384 2.1:+4293416 MS.gene069898:CDS
TAAAGCAGTAATAAGCGGCA+GGG 0.613473 2.1:+4292863 MS.gene069898:CDS
GCAGTAATAAGCGGCAGGGG+AGG 0.613983 2.1:+4292867 MS.gene069898:CDS
TTGTAAGCTAACAATCACAT+TGG 0.619856 2.1:-4292937 None:intergenic
CATTGGAAGTTGCCAATATG+GGG 0.619988 2.1:-4292920 None:intergenic
TTCCCTCCAACCGTAAACAA+TGG 0.623545 2.1:+4294569 MS.gene069898:CDS
AAAGCAGTAATAAGCGGCAG+GGG 0.627829 2.1:+4292864 MS.gene069898:CDS
GTCTATAGAATGTTGAGGAA+TGG 0.631178 2.1:-4292898 None:intergenic
TTTCAACCAGCAGAAGAAGG+AGG 0.636316 2.1:+4292702 MS.gene069898:CDS
AAATAGGGTGAGTGTCCCGA+CGG 0.639877 2.1:-4294758 None:intergenic
ATGGGGTCTATAGAATGTTG+AGG 0.640598 2.1:-4292903 None:intergenic
CCTCCAACCGTAAACAATGG+TGG 0.651521 2.1:+4294572 MS.gene069898:CDS
CTGAGACATCTTCCATTCCG+AGG 0.655881 2.1:-4294724 None:intergenic
AGGAGGTACCGGTAGTAGTG+GGG 0.672269 2.1:+4294861 MS.gene069898:CDS
ATGTTTACCTGAGAGTCAAG+GGG 0.682496 2.1:-4292984 None:intergenic
TCTGCTCAAATTGCATCAGG+AGG 0.685331 2.1:+4294844 MS.gene069898:CDS
AGACATCTTCCATTCCGAGG+AGG 0.717446 2.1:-4294721 None:intergenic
ACTGTAGCAATGATTCAAGG+AGG 0.729288 2.1:+4293413 MS.gene069898:CDS
CCTGGAAAGATGCATGCATG+TGG 0.730006 2.1:+4291064 MS.gene069898:CDS
CATAACAGACCTGCTCAATG+CGG 0.730675 2.1:-4293523 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAGGAAAAAATAATAAT+AGG - chr2.1:4292595-4292614 None:intergenic 10.0%
!! AAAAACAAATAAAGTACAAA+TGG + chr2.1:4291805-4291824 MS.gene069898:intron 15.0%
!! AAAATTGTATAAGCTATAAA+CGG - chr2.1:4294310-4294329 None:intergenic 15.0%
!! ATATCTTAATTAAGTGTTTA+TGG - chr2.1:4294399-4294418 None:intergenic 15.0%
!! ATGAAAACAGATAAATAAAA+AGG - chr2.1:4294023-4294042 None:intergenic 15.0%
!! ATTAACAAAGCATAAAAAAT+AGG - chr2.1:4291228-4291247 None:intergenic 15.0%
!! AAAAAAGAGTAACTGAAAAT+AGG - chr2.1:4293115-4293134 None:intergenic 20.0%
!! AAAAAGAGTAACTGAAAATA+GGG - chr2.1:4293114-4293133 None:intergenic 20.0%
!! AAAAATAAGGAATGATATCA+CGG - chr2.1:4292657-4292676 None:intergenic 20.0%
!! AAAAGGAAATGAAAAAAACT+TGG + chr2.1:4292534-4292553 MS.gene069898:intron 20.0%
!! AAATAAACACTTGTAAGATT+GGG + chr2.1:4292204-4292223 MS.gene069898:intron 20.0%
!! AACATAAATAACATTCTCAT+AGG + chr2.1:4293385-4293404 MS.gene069898:intron 20.0%
!! AGTTAATTAAAGTGACAAAA+AGG - chr2.1:4293173-4293192 None:intergenic 20.0%
!! ATCATATTCAAATAATTGTG+CGG - chr2.1:4293338-4293357 None:intergenic 20.0%
!! TAAAGAAAGATTTAGAGATT+TGG + chr2.1:4291481-4291500 MS.gene069898:intron 20.0%
!! TAAATAAACACTTGTAAGAT+TGG + chr2.1:4292203-4292222 MS.gene069898:intron 20.0%
!! TAAGCTTATAAGAACAAAAT+TGG + chr2.1:4290734-4290753 MS.gene069898:CDS 20.0%
!!! AGGCATAGTTTTTTTTTAAA+AGG - chr2.1:4292449-4292468 None:intergenic 20.0%
!!! ATGAGAATGTTATTTATGTT+AGG - chr2.1:4293385-4293404 None:intergenic 20.0%
!!! CATACATTAAGTAGATTTTA+CGG + chr2.1:4293667-4293686 MS.gene069898:intron 20.0%
!!! GTTTTTTTTTAAAAGGTGTA+AGG - chr2.1:4292442-4292461 None:intergenic 20.0%
!!! TTGGTTTTCAATTTTAATCA+TGG + chr2.1:4290912-4290931 MS.gene069898:intron 20.0%
!!! TTTAATCATGGATTTTATCT+GGG + chr2.1:4290924-4290943 MS.gene069898:intron 20.0%
!!! TTTCCTTTTATGAATTATCT+TGG + chr2.1:4292605-4292624 MS.gene069898:intron 20.0%
!!! TTTGAAATAAATTTGGAATG+TGG + chr2.1:4291610-4291629 MS.gene069898:intron 20.0%
!!! TTTTAATCATGGATTTTATC+TGG + chr2.1:4290923-4290942 MS.gene069898:intron 20.0%
! AAAAAAAGTAGACCTGAATA+AGG - chr2.1:4290869-4290888 None:intergenic 25.0%
! AAAAGAGTAACTGAAAATAG+GGG - chr2.1:4293113-4293132 None:intergenic 25.0%
! AAATAAAAAGGCTTTGCAAA+AGG - chr2.1:4294011-4294030 None:intergenic 25.0%
! AGAACAAAATTGGATGAATT+AGG + chr2.1:4290744-4290763 MS.gene069898:CDS 25.0%
! AGGAAAAAATAATAATAGGC+AGG - chr2.1:4292591-4292610 None:intergenic 25.0%
! ATGCAAAAATTGGCAAAAAA+AGG - chr2.1:4291007-4291026 None:intergenic 25.0%
! CAATTCCTAAATGCAAAAAT+TGG - chr2.1:4291017-4291036 None:intergenic 25.0%
! CATAATCAAGATGATTGAAA+AGG + chr2.1:4292517-4292536 MS.gene069898:intron 25.0%
! GATTTAGAAAATCAGAAAAG+AGG - chr2.1:4294155-4294174 None:intergenic 25.0%
! TAGAGATTTGGATCAAAATA+TGG + chr2.1:4291493-4291512 MS.gene069898:intron 25.0%
! TAGCTTATATCAAAACAGTT+TGG + chr2.1:4292317-4292336 MS.gene069898:intron 25.0%
! TATTGTAACTGAGATGTTAA+AGG - chr2.1:4291972-4291991 None:intergenic 25.0%
! TGAGATTGTAGATAATACTA+TGG - chr2.1:4292560-4292579 None:intergenic 25.0%
! TTATCACTGTGATTCTATAT+AGG + chr2.1:4294449-4294468 MS.gene069898:intron 25.0%
!! ATTGCAAACTAAGTTCTAAT+GGG - chr2.1:4293042-4293061 None:intergenic 25.0%
!! CAATTTTTGCATTTAGGAAT+TGG + chr2.1:4291015-4291034 MS.gene069898:intron 25.0%
!! TATTTCACTTGATAGTATCA+GGG + chr2.1:4293712-4293731 MS.gene069898:intron 25.0%
!! TCTTTCTTTATAGTTTTCCT+AGG - chr2.1:4291471-4291490 None:intergenic 25.0%
!! TGAATTGACTTATGTTTACA+AGG - chr2.1:4292469-4292488 None:intergenic 25.0%
!! TTATTTCACTTGATAGTATC+AGG + chr2.1:4293711-4293730 MS.gene069898:intron 25.0%
!! TTTTGCCAATTTTTGCATTT+AGG + chr2.1:4291009-4291028 MS.gene069898:intron 25.0%
!! TTTTGTTCTTATAAGCTTAC+TGG - chr2.1:4290733-4290752 None:intergenic 25.0%
!!! ATGACCAAATTTTGGAATTT+GGG + chr2.1:4293761-4293780 MS.gene069898:intron 25.0%
!!! CACTGCTTTTGAAATAAATT+TGG + chr2.1:4291603-4291622 MS.gene069898:intron 25.0%
!!! CATTCCTTATTTTTGGTATA+GGG + chr2.1:4292663-4292682 MS.gene069898:intron 25.0%
!!! GTGATATCATTCCTTATTTT+TGG + chr2.1:4292656-4292675 MS.gene069898:intron 25.0%
!!! TCATTCCTTATTTTTGGTAT+AGG + chr2.1:4292662-4292681 MS.gene069898:intron 25.0%
!!! TGCATTGATTACAGAAATTT+CGG + chr2.1:4294057-4294076 MS.gene069898:intron 25.0%
!!! TTCTTTAAAGCAGTAATAAG+CGG + chr2.1:4292858-4292877 MS.gene069898:CDS 25.0%
AAAAATGTTGAAAACCATGC+TGG + chr2.1:4293310-4293329 MS.gene069898:intron 30.0%
AATTCTTCATAACCAAGTTC+AGG - chr2.1:4290705-4290724 None:intergenic 30.0%
AGGCCAAGATAATTCATAAA+AGG - chr2.1:4292611-4292630 None:intergenic 30.0%
ATCTACAAACATTACGATCT+TGG + chr2.1:4291866-4291885 MS.gene069898:intron 30.0%
CAAAGCATAAAAAATAGGAG+AGG - chr2.1:4291223-4291242 None:intergenic 30.0%
CACCTAAAGGTAAGTTATTT+AGG - chr2.1:4292797-4292816 None:intergenic 30.0%
GAGTATAGTCATATCATTAG+AGG + chr2.1:4291435-4291454 MS.gene069898:intron 30.0%
GTCAAACATGAATTCTGTTT+CGG + chr2.1:4292088-4292107 MS.gene069898:intron 30.0%
GTCCTAAATAACTTACCTTT+AGG + chr2.1:4292792-4292811 MS.gene069898:CDS 30.0%
TCATTGATGTAGATTATCAC+TGG + chr2.1:4294485-4294504 MS.gene069898:intron 30.0%
TTAAGATATTTATCCAGCCA+AGG + chr2.1:4294410-4294429 MS.gene069898:intron 30.0%
TTATGTTGAAAGAAAACCTG+TGG + chr2.1:4291383-4291402 MS.gene069898:intron 30.0%
TTCCATCAACAAAATGTGTT+GGG + chr2.1:4293985-4294004 MS.gene069898:intron 30.0%
TTGAATATGATGAAAACCTG+AGG + chr2.1:4293347-4293366 MS.gene069898:intron 30.0%
TTGTAAGCTAACAATCACAT+TGG - chr2.1:4292940-4292959 None:intergenic 30.0%
TTTATCTGGGTTTGATGAAA+AGG + chr2.1:4290937-4290956 MS.gene069898:intron 30.0%
TTTATGTTAGGCAACTATAG+AGG - chr2.1:4293373-4293392 None:intergenic 30.0%
TTTCCATCAACAAAATGTGT+TGG + chr2.1:4293984-4294003 MS.gene069898:intron 30.0%
! AATAAATTTGGAATGTGGAG+AGG + chr2.1:4291615-4291634 MS.gene069898:intron 30.0%
! ACAATTTAAAACATTCCGGT+CGG + chr2.1:4292005-4292024 MS.gene069898:intron 30.0%
! CATTGCAAACTAAGTTCTAA+TGG - chr2.1:4293043-4293062 None:intergenic 30.0%
! GACCACAATTTAAAACATTC+CGG + chr2.1:4292001-4292020 MS.gene069898:intron 30.0%
! GCTAAGAAAATTTTAGATGC+TGG + chr2.1:4292732-4292751 MS.gene069898:CDS 30.0%
! TTAAAGTGACAAAAAGGTGT+CGG - chr2.1:4293167-4293186 None:intergenic 30.0%
! TTGATTGGATGGTTGATATA+AGG + chr2.1:4290661-4290680 MS.gene069898:CDS 30.0%
! TTGCATGCCTTTAACTTTAT+CGG - chr2.1:4294642-4294661 None:intergenic 30.0%
! TTTTTGCATTTAGGAATTGG+TGG + chr2.1:4291018-4291037 MS.gene069898:intron 30.0%
!! AACTGTTTTTCTCAAACCAA+AGG - chr2.1:4291675-4291694 None:intergenic 30.0%
!! ATCTTCGTTGACTTTGAAAT+AGG - chr2.1:4294777-4294796 None:intergenic 30.0%
!! ATTTGGTTGTTGTTGTTTGT+TGG + chr2.1:4291577-4291596 MS.gene069898:intron 30.0%
!! GCATTGATTACAGAAATTTC+GGG + chr2.1:4294058-4294077 MS.gene069898:intron 30.0%
!! TAGAAAAGATGGTGGAAAAT+AGG + chr2.1:4291346-4291365 MS.gene069898:intron 30.0%
!! TCTTCGTTGACTTTGAAATA+GGG - chr2.1:4294776-4294795 None:intergenic 30.0%
!! TTTGGTTGTTGTTGTTTGTT+GGG + chr2.1:4291578-4291597 MS.gene069898:intron 30.0%
!!! CAAATTTTGGAATTTGGGTT+GGG + chr2.1:4293766-4293785 MS.gene069898:intron 30.0%
!!! CATGACCAAATTTTGGAATT+TGG + chr2.1:4293760-4293779 MS.gene069898:intron 30.0%
!!! CTTATTTTTGGTATAGGGAA+CGG + chr2.1:4292668-4292687 MS.gene069898:intron 30.0%
AAGCAATTGCGAAACTGTTT+GGG + chr2.1:4294232-4294251 MS.gene069898:intron 35.0%
AATAAGCTGAAAACAGCTTG+CGG - chr2.1:4292259-4292278 None:intergenic 35.0%
ACATTACGATCTTGGTGAAT+TGG + chr2.1:4291874-4291893 MS.gene069898:intron 35.0%
ACATTCTATAGACCCCATAT+TGG + chr2.1:4292908-4292927 MS.gene069898:CDS 35.0%
ACATTGGAAGTTGCCAATAT+GGG - chr2.1:4292924-4292943 None:intergenic 35.0%
ACCATCCAATCAAAAACTTG+AGG - chr2.1:4290654-4290673 None:intergenic 35.0%
ACCTATTGTAGAAAAGATGG+TGG + chr2.1:4291338-4291357 MS.gene069898:intron 35.0%
ACTGCAACTGGATGTTTATA+TGG - chr2.1:4290774-4290793 None:intergenic 35.0%
AGAAAGACTTCTCTTCTTCA+AGG - chr2.1:4294550-4294569 None:intergenic 35.0%
AGACTTTGCATTCTATCAAG+AGG + chr2.1:4294679-4294698 MS.gene069898:CDS 35.0%
AGCACCTATTGTAGAAAAGA+TGG + chr2.1:4291335-4291354 MS.gene069898:intron 35.0%
AGCTTTCGTTTGAAAAAGCT+CGG - chr2.1:4293487-4293506 None:intergenic 35.0%
AGTCATATCATTAGAGGCAA+AGG + chr2.1:4291441-4291460 MS.gene069898:intron 35.0%
ATCAAAAACTTGAGGCTCTT+TGG - chr2.1:4290646-4290665 None:intergenic 35.0%
ATCTTGGTGAATTGGTATAG+TGG + chr2.1:4291882-4291901 MS.gene069898:intron 35.0%
ATGAAAAAGAGTTACAGGTG+TGG + chr2.1:4291140-4291159 MS.gene069898:intron 35.0%
ATTCATGAGAATCCTGAACT+TGG + chr2.1:4290690-4290709 MS.gene069898:CDS 35.0%
CAACCAAATATTATCCCACT+AGG - chr2.1:4291566-4291585 None:intergenic 35.0%
CATCAAAGGACAAAAACAGA+AGG - chr2.1:4292631-4292650 None:intergenic 35.0%
CCAACCCAAATTCCAAAATT+TGG - chr2.1:4293768-4293787 None:intergenic 35.0%
CGTTCCCTATACCAAAAATA+AGG - chr2.1:4292670-4292689 None:intergenic 35.0%
CTGCAACTGGATGTTTATAT+GGG - chr2.1:4290773-4290792 None:intergenic 35.0%
CTGCAATTTATCTGCATGAT+TGG - chr2.1:4291846-4291865 None:intergenic 35.0%
CTTATCAATCCCAAAGTTTC+TGG + chr2.1:4290614-4290633 MS.gene069898:CDS 35.0%
CTTCTTACAACAAAATCCAC+AGG - chr2.1:4291402-4291421 None:intergenic 35.0%
GAAAATGTCTCTGCCATATT+TGG + chr2.1:4292762-4292781 MS.gene069898:CDS 35.0%
GCAAATAGACGCATAAACTT+TGG + chr2.1:4294100-4294119 MS.gene069898:intron 35.0%
GGAAAATCGTAGAATGAATC+CGG + chr2.1:4291903-4291922 MS.gene069898:intron 35.0%
GGAATATAATGGCTGTTTGA+GGG + chr2.1:4293285-4293304 MS.gene069898:intron 35.0%
GGCAAAAAAAGGATTGAACT+TGG - chr2.1:4290996-4291015 None:intergenic 35.0%
GTCTATAGAATGTTGAGGAA+TGG - chr2.1:4292901-4292920 None:intergenic 35.0%
GTTAATGTACTTGACGAGAT+AGG + chr2.1:4291242-4291261 MS.gene069898:intron 35.0%
TAACTTACCTTTAGGTGAAG+TGG + chr2.1:4292800-4292819 MS.gene069898:CDS 35.0%
TAAGCAATTGCGAAACTGTT+TGG + chr2.1:4294231-4294250 MS.gene069898:intron 35.0%
TAGGACATGCAATCCAAATA+TGG - chr2.1:4292778-4292797 None:intergenic 35.0%
TCTGTTTACATAAGCTATCC+AGG - chr2.1:4292294-4292313 None:intergenic 35.0%
TGATAAGTGGTCATTTGAAG+TGG - chr2.1:4290601-4290620 None:intergenic 35.0%
TGCTTCAAACAATGATGAGT+TGG - chr2.1:4293215-4293234 None:intergenic 35.0%
TGGCTAATTCCAGAAACTTT+GGG - chr2.1:4290626-4290645 None:intergenic 35.0%
TGTAAGAAGAGTAGATCAAG+TGG + chr2.1:4291413-4291432 MS.gene069898:intron 35.0%
TTATCTTGTCTCTTAGAGTC+TGG + chr2.1:4294175-4294194 MS.gene069898:intron 35.0%
TTCACACCAAACACAAATGA+AGG + chr2.1:4293887-4293906 MS.gene069898:intron 35.0%
TTGACTGTAGCAATGATTCA+AGG + chr2.1:4293410-4293429 MS.gene069898:CDS 35.0%
TTGGCTAATTCCAGAAACTT+TGG - chr2.1:4290627-4290646 None:intergenic 35.0%
! AAGAGCCTCAAGTTTTTGAT+TGG + chr2.1:4290646-4290665 MS.gene069898:CDS 35.0%
! ATTGGATGGTTGATATAAGG+AGG + chr2.1:4290664-4290683 MS.gene069898:CDS 35.0%
! CACTTTGCATGACCAAATTT+TGG + chr2.1:4293753-4293772 MS.gene069898:intron 35.0%
! GATTGACTTAGCTTATCTAC+TGG + chr2.1:4292178-4292197 MS.gene069898:intron 35.0%
! GTTATTGGTTACATAGGAAC+TGG + chr2.1:4290801-4290820 MS.gene069898:CDS 35.0%
! TCCACCATCTTTTCTACAAT+AGG - chr2.1:4291342-4291361 None:intergenic 35.0%
! TTCATGCATCATTAGCTTCT+AGG + chr2.1:4294819-4294838 MS.gene069898:CDS 35.0%
! TTCGGGAACTAAGTTCTTTT+GGG + chr2.1:4294075-4294094 MS.gene069898:intron 35.0%
! TTTCGGGAACTAAGTTCTTT+TGG + chr2.1:4294074-4294093 MS.gene069898:intron 35.0%
!! ACAGGTGTTATTGGTTACAT+AGG + chr2.1:4290795-4290814 MS.gene069898:CDS 35.0%
!! GAAACTTTGGGATTGATAAG+TGG - chr2.1:4290614-4290633 None:intergenic 35.0%
!! GACCGGAATGTTTTAAATTG+TGG - chr2.1:4292006-4292025 None:intergenic 35.0%
!! TCATTTGTGTTTGGTGTGAA+GGG - chr2.1:4293887-4293906 None:intergenic 35.0%
!! TTCATTTGTGTTTGGTGTGA+AGG - chr2.1:4293888-4293907 None:intergenic 35.0%
!! TTTTTAAAAGGTGTAAGGCC+TGG - chr2.1:4292437-4292456 None:intergenic 35.0%
!!! CCAAATTTTGGAATTTGGGT+TGG + chr2.1:4293765-4293784 MS.gene069898:intron 35.0%
!!! CTTCTGTTTTTGTCCTTTGA+TGG + chr2.1:4292629-4292648 MS.gene069898:intron 35.0%
!!! TACTATTTTCAAAGTGTCGC+CGG + chr2.1:4294602-4294621 MS.gene069898:CDS 35.0%
AACAATAACACGCATGACCT+TGG + chr2.1:4291639-4291658 MS.gene069898:intron 40.0%
AACGAAGATGCACTTCCTTA+CGG + chr2.1:4294788-4294807 MS.gene069898:CDS 40.0%
AAGAATCTGAGGGATTGCTT+TGG - chr2.1:4293085-4293104 None:intergenic 40.0%
AAGCCATTGCCTGCAAATAT+AGG - chr2.1:4292840-4292859 None:intergenic 40.0%
AAGTCTTCTGATCCCATCAT+CGG - chr2.1:4294665-4294684 None:intergenic 40.0%
AATCCCTAACCGACTAATTG+TGG - chr2.1:4293945-4293964 None:intergenic 40.0%
AATCTAAGCAGACCCAAAGT+TGG - chr2.1:4292162-4292181 None:intergenic 40.0%
ACCTAACTGCCACAATTAGT+CGG + chr2.1:4293933-4293952 MS.gene069898:intron 40.0%
ACTGTAGCAATGATTCAAGG+AGG + chr2.1:4293413-4293432 MS.gene069898:CDS 40.0%
AGATGACACCATTAGAGAGT+TGG + chr2.1:4291309-4291328 MS.gene069898:intron 40.0%
AGATGTTTACCTGAGAGTCA+AGG - chr2.1:4292989-4293008 None:intergenic 40.0%
AGTCATGTCTCTAGACAATG+TGG + chr2.1:4293847-4293866 MS.gene069898:intron 40.0%
ATAAACTTTGGCCAGGGAAA+TGG + chr2.1:4294112-4294131 MS.gene069898:intron 40.0%
ATACATATTCCTCCTCGGAA+TGG + chr2.1:4294712-4294731 MS.gene069898:CDS 40.0%
ATGACACCATTAGAGAGTTG+GGG + chr2.1:4291311-4291330 MS.gene069898:intron 40.0%
ATGCAAGCCACCATTGTTTA+CGG - chr2.1:4294582-4294601 None:intergenic 40.0%
ATGGGGTCTATAGAATGTTG+AGG - chr2.1:4292906-4292925 None:intergenic 40.0%
ATGTTTACCTGAGAGTCAAG+GGG - chr2.1:4292987-4293006 None:intergenic 40.0%
ATTCCAGACTCTGTCACAAT+TGG + chr2.1:4293452-4293471 MS.gene069898:CDS 40.0%
CACATTGGAAGTTGCCAATA+TGG - chr2.1:4292925-4292944 None:intergenic 40.0%
CACTGTCTTGCGGAATATAA+TGG + chr2.1:4293274-4293293 MS.gene069898:intron 40.0%
CATTGGAAGTTGCCAATATG+GGG - chr2.1:4292923-4292942 None:intergenic 40.0%
CATTTAGGAATTGGTGGAGT+GGG + chr2.1:4291024-4291043 MS.gene069898:intron 40.0%
CCAAATATTATCCCACTAGG+TGG - chr2.1:4291563-4291582 None:intergenic 40.0%
CCACCTAGTGGGATAATATT+TGG + chr2.1:4291560-4291579 MS.gene069898:intron 40.0%
CGGAATATAATGGCTGTTTG+AGG + chr2.1:4293284-4293303 MS.gene069898:intron 40.0%
CTTATTTCCATAAGCTCTCC+TGG + chr2.1:4292273-4292292 MS.gene069898:intron 40.0%
GATGACACCATTAGAGAGTT+GGG + chr2.1:4291310-4291329 MS.gene069898:intron 40.0%
GATGTTTACCTGAGAGTCAA+GGG - chr2.1:4292988-4293007 None:intergenic 40.0%
GCAGCATGAAAAAGAGTTAC+AGG + chr2.1:4291135-4291154 MS.gene069898:CDS 40.0%
GTATCTGCTCAAATTGCATC+AGG + chr2.1:4294841-4294860 MS.gene069898:CDS 40.0%
GTCATGTCTCTAGACAATGT+GGG + chr2.1:4293848-4293867 MS.gene069898:intron 40.0%
GTGATTCTATATAGGCGCTA+AGG + chr2.1:4294457-4294476 MS.gene069898:intron 40.0%
TAAACTTTGGCCAGGGAAAT+GGG + chr2.1:4294113-4294132 MS.gene069898:intron 40.0%
TAAAGCAGTAATAAGCGGCA+GGG + chr2.1:4292863-4292882 MS.gene069898:CDS 40.0%
TATGGATGCTCTCCTTATTC+AGG + chr2.1:4290854-4290873 MS.gene069898:CDS 40.0%
TGATATCACGGATCCATCAA+AGG - chr2.1:4292645-4292664 None:intergenic 40.0%
TGTTGCTCTTAGAGCTGATA+TGG + chr2.1:4290836-4290855 MS.gene069898:CDS 40.0%
TTAAAGCAGTAATAAGCGGC+AGG + chr2.1:4292862-4292881 MS.gene069898:CDS 40.0%
TTAGGGATTGACCGCAATTA+TGG + chr2.1:4293956-4293975 MS.gene069898:intron 40.0%
! ACCTTACAAACTGGTTTCGT+AGG - chr2.1:4293803-4293822 None:intergenic 40.0%
! ACTAAGTTCTAATGGGTGGT+TGG - chr2.1:4293035-4293054 None:intergenic 40.0%
! ACTATAAGAAGAGCACACCT+TGG - chr2.1:4294430-4294449 None:intergenic 40.0%
! CCTTACAAACTGGTTTCGTA+GGG - chr2.1:4293802-4293821 None:intergenic 40.0%
! GAGCATAAGAGTAAAGTACC+TGG + chr2.1:4291046-4291065 MS.gene069898:CDS 40.0%
! GCAAACTAAGTTCTAATGGG+TGG - chr2.1:4293039-4293058 None:intergenic 40.0%
! TCGGGAACTAAGTTCTTTTG+GGG + chr2.1:4294076-4294095 MS.gene069898:intron 40.0%
! TTCTAATGGGTGGTTGGAAA+GGG - chr2.1:4293029-4293048 None:intergenic 40.0%
! TTTAAAACATTCCGGTCGGA+CGG + chr2.1:4292009-4292028 MS.gene069898:intron 40.0%
!! ACTCTTTTTCATGCTGCTTG+AGG - chr2.1:4291132-4291151 None:intergenic 40.0%
!! AGATGGTGGAAAATAGGCTT+AGG + chr2.1:4291352-4291371 MS.gene069898:intron 40.0%
!! AGGGATTGCTTTGGAAATGA+CGG - chr2.1:4293076-4293095 None:intergenic 40.0%
!! GCCTCAAGTTTTTGATTGGA+TGG + chr2.1:4290650-4290669 MS.gene069898:CDS 40.0%
!! GTTTTTCAACCAGCAGAAGA+AGG + chr2.1:4292699-4292718 MS.gene069898:CDS 40.0%
!! TCAGCTCTAAGAGCAACAAA+AGG - chr2.1:4290834-4290853 None:intergenic 40.0%
!! TGTAAGATTGGGAGTGCTTA+TGG + chr2.1:4292215-4292234 MS.gene069898:intron 40.0%
!!! ACTATTTTCAAAGTGTCGCC+GGG + chr2.1:4294603-4294622 MS.gene069898:CDS 40.0%
!!! GTTCTTTTGAGACTTCTGCT+TGG + chr2.1:4293246-4293265 MS.gene069898:intron 40.0%
AAACATCCAGTTGCAGTGAC+AGG + chr2.1:4290777-4290796 MS.gene069898:CDS 45.0%
AAACTTTGGCCAGGGAAATG+GGG + chr2.1:4294114-4294133 MS.gene069898:intron 45.0%
AAAGCAGTAATAAGCGGCAG+GGG + chr2.1:4292864-4292883 MS.gene069898:CDS 45.0%
AAGCCACCATTGTTTACGGT+TGG - chr2.1:4294578-4294597 None:intergenic 45.0%
AAGCTATCCAGGAGAGCTTA+TGG - chr2.1:4292283-4292302 None:intergenic 45.0%
ACCGACTAATTGTGGCAGTT+AGG - chr2.1:4293937-4293956 None:intergenic 45.0%
ACTGCCACAATTAGTCGGTT+AGG + chr2.1:4293938-4293957 MS.gene069898:intron 45.0%
AGACGCATAAACTTTGGCCA+GGG + chr2.1:4294106-4294125 MS.gene069898:intron 45.0%
AGGATGTTGTCTTGGATGTG+TGG + chr2.1:4291262-4291281 MS.gene069898:intron 45.0%
AGGGGAAGTCAAGAATCTGA+GGG - chr2.1:4293095-4293114 None:intergenic 45.0%
AGGTCTGGTCCTATATTTGC+AGG + chr2.1:4292828-4292847 MS.gene069898:CDS 45.0%
AGTGCTCGTTATGCCAACTT+TGG + chr2.1:4292146-4292165 MS.gene069898:intron 45.0%
ATAACACCTGTCACTGCAAC+TGG - chr2.1:4290786-4290805 None:intergenic 45.0%
CACCATTGTTTACGGTTGGA+GGG - chr2.1:4294574-4294593 None:intergenic 45.0%
CATAACAGACCTGCTCAATG+CGG - chr2.1:4293526-4293545 None:intergenic 45.0%
CCAGCACCTTCATTTGTGTT+TGG - chr2.1:4293896-4293915 None:intergenic 45.0%
CCCTACGAAACCAGTTTGTA+AGG + chr2.1:4293799-4293818 MS.gene069898:intron 45.0%
CCTGGATACATATTCCTCCT+CGG + chr2.1:4294707-4294726 MS.gene069898:CDS 45.0%
CGATATTTCCCCACTACTAC+CGG - chr2.1:4294872-4294891 None:intergenic 45.0%
CTAGAAGCCACTTCACCTAA+AGG - chr2.1:4292810-4292829 None:intergenic 45.0%
CTCAGTTGAACATCTTCCGT+CGG + chr2.1:4294742-4294761 MS.gene069898:CDS 45.0%
CTGCCACAATTAGTCGGTTA+GGG + chr2.1:4293939-4293958 MS.gene069898:intron 45.0%
CTTGTCTCTTAGAGTCTGGT+TGG + chr2.1:4294179-4294198 MS.gene069898:intron 45.0%
CTTTAGGTGAAGTGGCTTCT+AGG + chr2.1:4292808-4292827 MS.gene069898:CDS 45.0%
GACGAGATAGGATGTTGTCT+TGG + chr2.1:4291254-4291273 MS.gene069898:intron 45.0%
GCAAGCTTCACCTTACAAAC+TGG - chr2.1:4293812-4293831 None:intergenic 45.0%
GCATTTAGGAATTGGTGGAG+TGG + chr2.1:4291023-4291042 MS.gene069898:intron 45.0%
GCTCATGTTGCTATGCTTCT+TGG + chr2.1:4291094-4291113 MS.gene069898:CDS 45.0%
GCTGTTTATCAGTCCAAACC+AGG + chr2.1:4292416-4292435 MS.gene069898:intron 45.0%
GGTCCTATATTTGCAGGCAA+TGG + chr2.1:4292834-4292853 MS.gene069898:CDS 45.0%
GTAGCAATGATTCAAGGAGG+TGG + chr2.1:4293416-4293435 MS.gene069898:CDS 45.0%
GTGCTCGTTATGCCAACTTT+GGG + chr2.1:4292147-4292166 MS.gene069898:intron 45.0%
TAGACGCATAAACTTTGGCC+AGG + chr2.1:4294105-4294124 MS.gene069898:intron 45.0%
TAGGGGAAGTCAAGAATCTG+AGG - chr2.1:4293096-4293115 None:intergenic 45.0%
TCAGTTGAACATCTTCCGTC+GGG + chr2.1:4294743-4294762 MS.gene069898:CDS 45.0%
TCTGCTCAAATTGCATCAGG+AGG + chr2.1:4294844-4294863 MS.gene069898:CDS 45.0%
TGGAAATCCCGCCATAATTG+CGG - chr2.1:4293970-4293989 None:intergenic 45.0%
TTAGAGGCAAAGGAAGTCCT+AGG + chr2.1:4291451-4291470 MS.gene069898:intron 45.0%
TTCCCTCCAACCGTAAACAA+TGG + chr2.1:4294569-4294588 MS.gene069898:CDS 45.0%
TTCTATCAAGAGGCTATGCC+TGG + chr2.1:4294689-4294708 MS.gene069898:CDS 45.0%
TTTCAACCAGCAGAAGAAGG+AGG + chr2.1:4292702-4292721 MS.gene069898:CDS 45.0%
! AAAAGGTGTAAGGCCTGGTT+TGG - chr2.1:4292432-4292451 None:intergenic 45.0%
! AAAGGCATGCAACCGATGAT+GGG + chr2.1:4294650-4294669 MS.gene069898:CDS 45.0%
! ATGTAATCGACTCCACCTAG+TGG + chr2.1:4291548-4291567 MS.gene069898:intron 45.0%
! CAAATTGCATCAGGAGGTAC+CGG + chr2.1:4294850-4294869 MS.gene069898:CDS 45.0%
! CAGTTGGGTTGCTATAGTTG+CGG + chr2.1:4291934-4291953 MS.gene069898:intron 45.0%
! CCAAACACAAATGAAGGTGC+TGG + chr2.1:4293893-4293912 MS.gene069898:intron 45.0%
! GGCCCAACACATTTTGTTGA+TGG - chr2.1:4293990-4294009 None:intergenic 45.0%
! GTGGTCATTTGAAGTGGAAG+AGG - chr2.1:4290595-4290614 None:intergenic 45.0%
! GTTCTAATGGGTGGTTGGAA+AGG - chr2.1:4293030-4293049 None:intergenic 45.0%
! GTTGCAGTGACAGGTGTTAT+TGG + chr2.1:4290786-4290805 MS.gene069898:CDS 45.0%
! TAAAGGCATGCAACCGATGA+TGG + chr2.1:4294649-4294668 MS.gene069898:CDS 45.0%
! TGTAATCGACTCCACCTAGT+GGG + chr2.1:4291549-4291568 MS.gene069898:intron 45.0%
!! CTTGGCGCCGATAAAGTTAA+AGG + chr2.1:4294632-4294651 MS.gene069898:CDS 45.0%
!! GCTCTAAGAGCAACAAAAGG+AGG - chr2.1:4290831-4290850 None:intergenic 45.0%
!!! CTTTTGAGACTTCTGCTTGG+AGG + chr2.1:4293249-4293268 MS.gene069898:intron 45.0%
!!! TATTTTTAATTTTATGATTT+TGG + chr2.1:4290893-4290912 MS.gene069898:intron 5.0%
AAAGTGCATAACCGTCCGAC+CGG - chr2.1:4292023-4292042 None:intergenic 50.0%
AAATAGGGTGAGTGTCCCGA+CGG - chr2.1:4294761-4294780 None:intergenic 50.0%
AATCCGGCTGATGTGCAGTT+GGG + chr2.1:4291919-4291938 MS.gene069898:intron 50.0%
ACACGCATGACCTTGGATAG+AGG + chr2.1:4291646-4291665 MS.gene069898:intron 50.0%
AGAACTTGACCCCATTTCCC+TGG - chr2.1:4294126-4294145 None:intergenic 50.0%
AGACATCTTCCATTCCGAGG+AGG - chr2.1:4294724-4294743 None:intergenic 50.0%
CAAGGAAGCTGACTGTTGCA+TGG - chr2.1:4294532-4294551 None:intergenic 50.0%
CCAAAGGCAACCTCTATCCA+AGG - chr2.1:4291659-4291678 None:intergenic 50.0%
CCACATGCATGCATCTTTCC+AGG - chr2.1:4291067-4291086 None:intergenic 50.0%
CCACCAATTGTGACAGAGTC+TGG - chr2.1:4293458-4293477 None:intergenic 50.0%
CCACCATTGTTTACGGTTGG+AGG - chr2.1:4294575-4294594 None:intergenic 50.0%
CCAGACTCTGTCACAATTGG+TGG + chr2.1:4293455-4293474 MS.gene069898:CDS 50.0%
CCGAGGAGGAATATGTATCC+AGG - chr2.1:4294710-4294729 None:intergenic 50.0%
CCTCCAACCGTAAACAATGG+TGG + chr2.1:4294572-4294591 MS.gene069898:CDS 50.0%
CCTGGAAAGATGCATGCATG+TGG + chr2.1:4291064-4291083 MS.gene069898:CDS 50.0%
CCTTGGATAGAGGTTGCCTT+TGG + chr2.1:4291656-4291675 MS.gene069898:intron 50.0%
CTGAGACATCTTCCATTCCG+AGG - chr2.1:4294727-4294746 None:intergenic 50.0%
GATTGATCCCCTTGACTCTC+AGG + chr2.1:4292977-4292996 MS.gene069898:CDS 50.0%
GGATTGACCGCAATTATGGC+GGG + chr2.1:4293960-4293979 MS.gene069898:intron 50.0%
GGGATTGACCGCAATTATGG+CGG + chr2.1:4293959-4293978 MS.gene069898:intron 50.0%
GTGCTACCCCAACTCTCTAA+TGG - chr2.1:4291320-4291339 None:intergenic 50.0%
TAGGCAACTATAGAGGCCTC+AGG - chr2.1:4293366-4293385 None:intergenic 50.0%
! ATAATTGTGCGGTGCCAGCA+TGG - chr2.1:4293327-4293346 None:intergenic 50.0%
! CTTGGAGGTACACTGTCTTG+CGG + chr2.1:4293264-4293283 MS.gene069898:intron 50.0%
! GTCGGACGGTTATGCACTTT+TGG + chr2.1:4292023-4292042 MS.gene069898:intron 50.0%
! TAAGAAGAGCACACCTTGGC+TGG - chr2.1:4294426-4294445 None:intergenic 50.0%
!! GTGTTTGGTGTGAAGGGTTG+TGG - chr2.1:4293881-4293900 None:intergenic 50.0%
ACTGAGACACCGCATTGAGC+AGG + chr2.1:4293514-4293533 MS.gene069898:CDS 55.0%
AGCAGAAGAAGGAGGTGGTG+GGG + chr2.1:4292710-4292729 MS.gene069898:CDS 55.0%
CAACCAGCAGAAGAAGGAGG+TGG + chr2.1:4292705-4292724 MS.gene069898:CDS 55.0%
CAACCCAACTGCACATCAGC+CGG - chr2.1:4291925-4291944 None:intergenic 55.0%
CAGCAGAAGAAGGAGGTGGT+GGG + chr2.1:4292709-4292728 MS.gene069898:CDS 55.0%
GAATCCGGCTGATGTGCAGT+TGG + chr2.1:4291918-4291937 MS.gene069898:intron 55.0%
GGTGAAGTGGCTTCTAGGTC+TGG + chr2.1:4292813-4292832 MS.gene069898:CDS 55.0%
!! AGGAGGTACCGGTAGTAGTG+GGG + chr2.1:4294861-4294880 MS.gene069898:CDS 55.0%
!! CAGGAGGTACCGGTAGTAGT+GGG + chr2.1:4294860-4294879 MS.gene069898:CDS 55.0%
!! TCAGGAGGTACCGGTAGTAG+TGG + chr2.1:4294859-4294878 MS.gene069898:CDS 55.0%
ATCGGCGCCAAGCAAACTCC+CGG - chr2.1:4294624-4294643 None:intergenic 60.0%
CCACCACCTCCTTCTTCTGC+TGG - chr2.1:4292711-4292730 None:intergenic 60.0%
CCAGCAGAAGAAGGAGGTGG+TGG + chr2.1:4292708-4292727 MS.gene069898:CDS 60.0%
GCAGTAATAAGCGGCAGGGG+AGG + chr2.1:4292867-4292886 MS.gene069898:CDS 60.0%
GCATGAAGTGCAGCGCCGTA+AGG - chr2.1:4294806-4294825 None:intergenic 60.0%
! AGTGTCGCCGGGAGTTTGCT+TGG + chr2.1:4294614-4294633 MS.gene069898:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 4290513 4294904 4290513 ID=MS.gene069898
chr2.1 mRNA 4290513 4294904 4290513 ID=MS.gene069898.t1;Parent=MS.gene069898
chr2.1 exon 4290513 4290875 4290513 ID=MS.gene069898.t1.exon1;Parent=MS.gene069898.t1
chr2.1 CDS 4290513 4290875 4290513 ID=cds.MS.gene069898.t1;Parent=MS.gene069898.t1
chr2.1 exon 4291031 4291156 4291031 ID=MS.gene069898.t1.exon2;Parent=MS.gene069898.t1
chr2.1 CDS 4291031 4291156 4291031 ID=cds.MS.gene069898.t1;Parent=MS.gene069898.t1
chr2.1 exon 4292684 4292998 4292684 ID=MS.gene069898.t1.exon3;Parent=MS.gene069898.t1
chr2.1 CDS 4292684 4292998 4292684 ID=cds.MS.gene069898.t1;Parent=MS.gene069898.t1
chr2.1 exon 4293407 4293535 4293407 ID=MS.gene069898.t1.exon4;Parent=MS.gene069898.t1
chr2.1 CDS 4293407 4293535 4293407 ID=cds.MS.gene069898.t1;Parent=MS.gene069898.t1
chr2.1 exon 4294497 4294904 4294497 ID=MS.gene069898.t1.exon5;Parent=MS.gene069898.t1
chr2.1 CDS 4294497 4294904 4294497 ID=cds.MS.gene069898.t1;Parent=MS.gene069898.t1
Gene Sequence

>MS.gene069898

ATGGGTTTCTTCAAATGGGTCAACTTCATAATCATCATTTTCATTTTCATTTTATCTGCAACATCAATCTTCTCAGATTCCTCTTCCACTTCAAATGACCACTTATCAATCCCAAAGTTTCTGGAATTAGCCAAAGAGCCTCAAGTTTTTGATTGGATGGTTGATATAAGGAGGAAGATTCATGAGAATCCTGAACTTGGTTATGAAGAATTTGAAACCAGTAAGCTTATAAGAACAAAATTGGATGAATTAGGTGTCCCATATAAACATCCAGTTGCAGTGACAGGTGTTATTGGTTACATAGGAACTGGTCTTCCTCCTTTTGTTGCTCTTAGAGCTGATATGGATGCTCTCCTTATTCAGGTCTACTTTTTTTTATTTATTTTTAATTTTATGATTTTGGTTTTCAATTTTAATCATGGATTTTATCTGGGTTTGATGAAAAGGAAAAACAAAATGAAAAATGACATTTTTTAAACTCCAAGTTCAATCCTTTTTTTGCCAATTTTTGCATTTAGGAATTGGTGGAGTGGGAGCATAAGAGTAAAGTACCTGGAAAGATGCATGCATGTGGTCATGATGCTCATGTTGCTATGCTTCTTGGTGCTGCAAAGATCCTCAAGCAGCATGAAAAAGAGTTACAGGTGTGGTTTTTCACTTCTTCATTTATTTACATTTATTCATGTTCATTCTTCTTAATACATGATCCTCTCCTATTTTTTATGCTTTGTTAATGTACTTGACGAGATAGGATGTTGTCTTGGATGTGTGGTAAGACTAAACGAGATGTGATTAGAGATGACACCATTAGAGAGTTGGGGTAGCACCTATTGTAGAAAAGATGGTGGAAAATAGGCTTAGGTGATTTGATTATGTTGAAAGAAAACCTGTGGATTTTGTTGTAAGAAGAGTAGATCAAGTGGAGTATAGTCATATCATTAGAGGCAAAGGAAGTCCTAGGAAAACTATAAAGAAAGATTTAGAGATTTGGATCAAAATATGGTTTTGATAAAACATCATGACGTAATTTTGTCTATGTAATCGACTCCACCTAGTGGGATAATATTTGGTTGTTGTTGTTTGTTGGGCACACTGCTTTTGAAATAAATTTGGAATGTGGAGAGGTAACAATAACACGCATGACCTTGGATAGAGGTTGCCTTTGGTTTGAGAAAAACAGTTTCTTTCTATCTACATTTTTAGTTTATATTTTCAATTACATAAATCATCTTTTTTTTTTTTTTTTTTTTTTACTTCACTTTTTTATTTTCAGTTACTTGTGTAGATAAATTAAAAACAAATAAAGTACAAATGGTGTGTTGTATTGAAACCAATCATGCAGATAAATTGCAGATCTACAAACATTACGATCTTGGTGAATTGGTATAGTGGAAAATCGTAGAATGAATCCGGCTGATGTGCAGTTGGGTTGCTATAGTTGCGGCAATTTTTGAAACCTTTAACATCTCAGTTACAATAACAGTCTTAGACCACAATTTAAAACATTCCGGTCGGACGGTTATGCACTTTTGGTGTTTAAGATGTTTCTGTGTTTTTAATTCAAATTATGTCAAAGTCAAACATGAATTCTGTTTCGGATGTCTGTATACTAGCAAACTGATGTCAAATTTTGAGTGCTCGTTATGCCAACTTTGGGTCTGCTTAGATTGACTTAGCTTATCTACTGGTGTAAATAAACACTTGTAAGATTGGGAGTGCTTATGGAAACAGCTTATGACATGTCCGCAAGCTGTTTTCAGCTTATTTCCATAAGCTCTCCTGGATAGCTTATGTAAACAGATTATAGCTTATATCAAAACAGTTTGGCTTTATTATTTTTATCATATATAGAAATATCTTATATAGAAGCGCTTAAATGATAAGCATATAAATGTTTAATTAAGCTGTTTATCAGTCCAAACCAGGCCTTACACCTTTTAAAAAAAAACTATGCCTTGTAAACATAAGTCAATTCATCAATTATTGTTGTAATTCTAACAAAAGCATAATCAAGATGATTGAAAAGGAAATGAAAAAAACTTGGCCATAGTATTATCTACAATCTCAAATTGACTCCTGCCTATTATTATTTTTTCCTTTTATGAATTATCTTGGCCTTCTGTTTTTGTCCTTTGATGGATCCGTGATATCATTCCTTATTTTTGGTATAGGGAACGGTTGTTCTTGTTTTTCAACCAGCAGAAGAAGGAGGTGGTGGGGCTAAGAAAATTTTAGATGCTGGAGTCTTAGAAAATGTCTCTGCCATATTTGGATTGCATGTCCTAAATAACTTACCTTTAGGTGAAGTGGCTTCTAGGTCTGGTCCTATATTTGCAGGCAATGGCTTCTTTAAAGCAGTAATAAGCGGCAGGGGAGGTCATGCAGCCATTCCTCAACATTCTATAGACCCCATATTGGCAACTTCCAATGTGATTGTTAGCTTACAACAAATTGTTTCTCGTGAGATTGATCCCCTTGACTCTCAGGTAAACATCTTATTTCATTTATTACTTCCCTTTCCAACCACCCATTAGAACTTAGTTTGCAATGTTCTTTGAATCCGTCATTTCCAAAGCAATCCCTCAGATTCTTGACTTCCCCTATTTTCAGTTACTCTTTTTTGTTATATACTTTTAGTTTTAGAAGTTTCACCGACACCTTTTTGTCACTTTAATTAACTCGAGAACGCGTGCTTGTTACCAACTCATCATTGTTTGAAGCATTAAAAGCTTTGTTCTTTTGAGACTTCTGCTTGGAGGTACACTGTCTTGCGGAATATAATGGCTGTTTGAGGGAAAAAAATGTTGAAAACCATGCTGGCACCGCACAATTATTTGAATATGATGAAAACCTGAGGCCTCTATAGTTGCCTAACATAAATAACATTCTCATAGGTTTTGACTGTAGCAATGATTCAAGGAGGTGGTGCATTCAATGTTATTCCAGACTCTGTCACAATTGGTGGCACTTTCCGAGCTTTTTCAAACGAAAGCTTCACGCAACTGAGACACCGCATTGAGCAGGTCTGTTATGAAGAAGAATAGATTTATTTTGTGCTTTAAATAGAAATAATGAGCTCTATTTTTTTTTATTTTTTTATGTTCATTAGTAGTGTGTTTTATTCTTATTTGTTTCTATACAAATTGTTAAACAACATACATTAAGTAGATTTTACGGATTTGAATAAAAAAATAAATATTATTTCACTTGATAGTATCAGGGAAGAGAGATAGACACGTTCACTTTGCATGACCAAATTTTGGAATTTGGGTTGGGTTTAACTCAACCCTACGAAACCAGTTTGTAAGGTGAAGCTTGCACAATTTTTAAACACAGTCATGTCTCTAGACAATGTGGGACTAAATCCACAACCCTTCACACCAAACACAAATGAAGGTGCTGGAGAATGCAATGAAGACAACCTAACTGCCACAATTAGTCGGTTAGGGATTGACCGCAATTATGGCGGGATTTCCATCAACAAAATGTGTTGGGCCTTTTGCAAAGCCTTTTTATTTATCTGTTTTCATGTGACTTAAAAACTTGCATTGATTACAGAAATTTCGGGAACTAAGTTCTTTTGGGGCGCAAATAGACGCATAAACTTTGGCCAGGGAAATGGGGTCAAGTTCTATGAGACCTCTTTTCTGATTTTCTAAATCTTATCTTGTCTCTTAGAGTCTGGTTGGATTGATTTATATGAGCTCATCTCTTGACATAAGCAATTGCGAAACTGTTTGGGATGAAAATAACTTATGAAATGTCTACAAGCTCTTCAAAATAGCTTATGAAAACCGTTTATAGCTTATACAATTTTGACTTCATCTTATTTTTTGTTATTAAAATAGTTTATGCATAAGCATTTTTGTGACGAGCGTTTATGCCATAAACACTTAATTAAGATATTTATCCAGCCAAGGTGTGCTCTTCTTATAGTTATCACTGTGATTCTATATAGGCGCTAAGGTTGTTTCATTGATGTAGATTATCACTGGACAAGCTGCTGTGCAGAGATGCCATGCAACAGTCAGCTTCCTTGAAGAAGAGAAGTCTTTCTTCCCTCCAACCGTAAACAATGGTGGCTTGCATTACTATTTTCAAAGTGTCGCCGGGAGTTTGCTTGGCGCCGATAAAGTTAAAGGCATGCAACCGATGATGGGATCAGAAGACTTTGCATTCTATCAAGAGGCTATGCCTGGATACATATTCCTCCTCGGAATGGAAGATGTCTCAGTTGAACATCTTCCGTCGGGACACTCACCCTATTTCAAAGTCAACGAAGATGCACTTCCTTACGGCGCTGCACTTCATGCATCATTAGCTTCTAGGTATCTGCTCAAATTGCATCAGGAGGTACCGGTAGTAGTGGGGAAATATCGTGATGAATTATAG
Protein sequence

>MS.gene069898.t1

MGFFKWVNFIIIIFIFILSATSIFSDSSSTSNDHLSIPKFLELAKEPQVFDWMVDIRRKIHENPELGYEEFETSKLIRTKLDELGVPYKHPVAVTGVIGYIGTGLPPFVALRADMDALLIQELVEWEHKSKVPGKMHACGHDAHVAMLLGAAKILKQHEKELQGTVVLVFQPAEEGGGGAKKILDAGVLENVSAIFGLHVLNNLPLGEVASRSGPIFAGNGFFKAVISGRGGHAAIPQHSIDPILATSNVIVSLQQIVSREIDPLDSQVLTVAMIQGGGAFNVIPDSVTIGGTFRAFSNESFTQLRHRIEQIITGQAAVQRCHATVSFLEEEKSFFPPTVNNGGLHYYFQSVAGSLLGADKVKGMQPMMGSEDFAFYQEAMPGYIFLLGMEDVSVEHLPSGHSPYFKVNEDALPYGAALHASLASRYLLKLHQEVPVVVGKYRDEL