Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76565.t1 | XP_003597384.1 | 95.3 | 443 | 21 | 0 | 1 | 443 | 1 | 443 | 7.00E-244 | 852.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76565.t1 | Q84XG9 | 67.8 | 407 | 129 | 2 | 38 | 443 | 37 | 442 | 1.7e-158 | 560.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76565.t1 | G7IRW2 | 95.3 | 443 | 21 | 0 | 1 | 443 | 1 | 443 | 5.0e-244 | 852.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene76565 | MS.gene02587 | PPI |
MS.gene76565 | MS.gene049260 | PPI |
MS.gene76565 | MS.gene045055 | PPI |
MS.gene76565 | MS.gene06367 | PPI |
MS.gene76565 | MS.gene013282 | PPI |
MS.gene76565 | MS.gene76566 | PPI |
MS.gene76565 | MS.gene85177 | PPI |
MS.gene76565 | MS.gene069897 | PPI |
MS.gene76565 | MS.gene85176 | PPI |
MS.gene76565 | MS.gene76562 | PPI |
MS.gene76565 | MS.gene36383 | PPI |
MS.gene76565 | MS.gene069896 | PPI |
MS.gene76565 | MS.gene057267 | PPI |
MS.gene013805 | MS.gene76565 | PPI |
MS.gene76565 | MS.gene06588 | PPI |
MS.gene76565 | MS.gene85178 | PPI |
MS.gene76565 | MS.gene73784 | PPI |
MS.gene76565 | MS.gene40923 | PPI |
MS.gene76565 | MS.gene013481 | PPI |
MS.gene76565 | MS.gene072157 | PPI |
MS.gene76565 | MS.gene069898 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76565.t1 | MTR_2g097540 | 95.260 | 443 | 21 | 0 | 1 | 443 | 1 | 443 | 0.0 | 871 |
MS.gene76565.t1 | MTR_2g100520 | 91.946 | 447 | 32 | 1 | 1 | 443 | 1 | 447 | 0.0 | 843 |
MS.gene76565.t1 | MTR_2g100510 | 83.178 | 428 | 69 | 1 | 19 | 443 | 20 | 447 | 0.0 | 727 |
MS.gene76565.t1 | MTR_2g097530 | 82.327 | 447 | 75 | 1 | 1 | 443 | 1 | 447 | 0.0 | 719 |
MS.gene76565.t1 | MTR_2g100560 | 81.920 | 448 | 76 | 1 | 1 | 443 | 5 | 452 | 0.0 | 718 |
MS.gene76565.t1 | MTR_8g015510 | 70.880 | 443 | 124 | 5 | 4 | 443 | 7 | 447 | 0.0 | 625 |
MS.gene76565.t1 | MTR_8g015510 | 71.254 | 327 | 91 | 3 | 120 | 443 | 1 | 327 | 3.82e-162 | 460 |
MS.gene76565.t1 | MTR_8g062790 | 52.941 | 425 | 197 | 2 | 1 | 424 | 2 | 424 | 1.67e-157 | 452 |
MS.gene76565.t1 | MTR_3g088590 | 54.639 | 388 | 176 | 0 | 38 | 425 | 85 | 472 | 1.12e-155 | 449 |
MS.gene76565.t1 | MTR_8g075310 | 52.404 | 416 | 178 | 4 | 9 | 421 | 15 | 413 | 6.54e-144 | 417 |
MS.gene76565.t1 | MTR_3g093030 | 46.988 | 415 | 217 | 1 | 11 | 425 | 4 | 415 | 2.27e-135 | 395 |
MS.gene76565.t1 | MTR_2g100550 | 97.484 | 159 | 4 | 0 | 1 | 159 | 1 | 159 | 1.35e-106 | 328 |
MS.gene76565.t1 | MTR_8g063060 | 42.810 | 306 | 143 | 7 | 118 | 420 | 58 | 334 | 3.92e-68 | 222 |
MS.gene76565.t1 | MTR_1g028070 | 66.667 | 114 | 38 | 0 | 151 | 264 | 14 | 127 | 2.19e-46 | 156 |
MS.gene76565.t1 | MTR_3g077040 | 52.239 | 134 | 40 | 2 | 133 | 266 | 1 | 110 | 3.65e-34 | 124 |
MS.gene76565.t1 | MTR_2g100530 | 92.857 | 56 | 4 | 0 | 388 | 443 | 14 | 69 | 1.37e-32 | 118 |
MS.gene76565.t1 | MTR_3g093040 | 44.554 | 101 | 46 | 1 | 133 | 223 | 1 | 101 | 4.11e-19 | 88.2 |
MS.gene76565.t1 | MTR_8g062090 | 48.246 | 114 | 21 | 3 | 159 | 266 | 29 | 110 | 6.30e-15 | 71.2 |
MS.gene76565.t1 | MTR_1205s0010 | 27.976 | 168 | 115 | 3 | 247 | 413 | 1 | 163 | 1.03e-12 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76565.t1 | AT1G51760 | 67.832 | 429 | 136 | 1 | 1 | 429 | 1 | 427 | 0.0 | 602 |
MS.gene76565.t1 | AT1G51780 | 64.554 | 426 | 147 | 2 | 1 | 425 | 1 | 423 | 0.0 | 560 |
MS.gene76565.t1 | AT5G56660 | 62.010 | 408 | 150 | 4 | 36 | 443 | 37 | 439 | 0.0 | 519 |
MS.gene76565.t1 | AT5G56650 | 62.255 | 408 | 149 | 4 | 36 | 443 | 36 | 438 | 0.0 | 517 |
MS.gene76565.t1 | AT5G56650 | 71.273 | 275 | 77 | 1 | 36 | 310 | 36 | 308 | 1.49e-142 | 410 |
MS.gene76565.t1 | AT3G02875 | 49.878 | 409 | 203 | 2 | 18 | 425 | 20 | 427 | 1.64e-139 | 407 |
MS.gene76565.t1 | AT1G44350 | 51.546 | 388 | 183 | 1 | 38 | 425 | 77 | 459 | 6.68e-135 | 396 |
MS.gene76565.t1 | AT5G54140 | 49.231 | 390 | 197 | 1 | 48 | 436 | 39 | 428 | 1.41e-133 | 391 |
MS.gene76565.t1 | AT3G02875 | 54.452 | 292 | 133 | 0 | 18 | 309 | 20 | 311 | 1.24e-106 | 319 |
MS.gene76565.t1 | AT3G02875 | 55.020 | 249 | 112 | 0 | 18 | 266 | 20 | 268 | 5.64e-91 | 278 |
Find 108 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAAATGTCTCTGCTATATT+TGG | 0.126749 | 2.3:+3163054 | MS.gene76565:CDS |
CACATTCGAAGCCGCCAAAA+TGG | 0.224265 | 2.3:-3163214 | None:intergenic |
ACATGCTATTGACCCCATTT+TGG | 0.230672 | 2.3:+3163200 | MS.gene76565:CDS |
GCTCATGTTGCTATGCTTCT+TGG | 0.234508 | 2.3:+3162505 | MS.gene76565:CDS |
ATCTTCGTTGACTTTGAAAT+AGG | 0.251089 | 2.3:-3164136 | None:intergenic |
CTCGGCGTTGATAAAGTTAA+AGG | 0.255745 | 2.3:+3163994 | MS.gene76565:CDS |
TAAGCTTATAAGAACAAAAT+TGG | 0.272704 | 2.3:+3162183 | MS.gene76565:CDS |
ACTGCAACTGGATGTTTATA+TGG | 0.283261 | 2.3:-3162220 | None:intergenic |
CCACCAATTGTGACGGAGTC+TGG | 0.290981 | 2.3:-3163601 | None:intergenic |
GATTGGTGTAGCAGATAAAA+AGG | 0.291090 | 2.3:-3162017 | None:intergenic |
GTTGCAGTGACAGGTGTTAT+TGG | 0.296181 | 2.3:+3162235 | MS.gene76565:CDS |
TTGATTGGATGGTTGATATA+AGG | 0.308095 | 2.3:+3162110 | MS.gene76565:CDS |
AAATGCAATCCCCAACTTCC+TGG | 0.325097 | 2.3:+3162063 | MS.gene76565:CDS |
TCTTCGTTGACTTTGAAATA+GGG | 0.331390 | 2.3:-3164135 | None:intergenic |
CCACCACCTCCTTCTTCTGC+TGG | 0.334818 | 2.3:-3163000 | None:intergenic |
AGAACAAAATTGGATGAATT+AGG | 0.334989 | 2.3:+3162193 | MS.gene76565:CDS |
AATTCCTCATAACCAAGTTC+AGG | 0.364088 | 2.3:-3162151 | None:intergenic |
GTTGGGGATTGCATTTGAAT+TGG | 0.365509 | 2.3:-3162056 | None:intergenic |
GAGGTTCCTTGGCTAATTCC+AGG | 0.371441 | 2.3:-3162081 | None:intergenic |
TTGGCTAATTCCAGGAAGTT+GGG | 0.376690 | 2.3:-3162073 | None:intergenic |
ATAACACCTGTCACTGCAAC+TGG | 0.378254 | 2.3:-3162232 | None:intergenic |
TCGGTCTTGTAGGTTATCAT+TGG | 0.395284 | 2.3:+3163847 | MS.gene76565:intron |
ACATTCGAAGCCGCCAAAAT+GGG | 0.396292 | 2.3:-3163213 | None:intergenic |
AACGAAGATGTACTTCCTTA+TGG | 0.401836 | 2.3:+3164150 | MS.gene76565:CDS |
CTTGGCTAATTCCAGGAAGT+TGG | 0.410636 | 2.3:-3162074 | None:intergenic |
CCACATGCATGCATCTTTCC+AGG | 0.410681 | 2.3:-3162475 | None:intergenic |
CAGGAGGTACCAGCGGTAGA+TGG | 0.413359 | 2.3:+3164222 | MS.gene76565:CDS |
AGGTCAGGTCCTATGCTTGC+AGG | 0.414114 | 2.3:+3163120 | MS.gene76565:CDS |
ACTTCACCTAAAGGTATGTT+AGG | 0.418812 | 2.3:-3163090 | None:intergenic |
ATGTCACTGTTGAACGTCTT+AGG | 0.432290 | 2.3:+3164100 | MS.gene76565:CDS |
GTTATTGGTTACATAGGAAC+TGG | 0.439405 | 2.3:+3162250 | MS.gene76565:CDS |
TTCTATCAAGAGGCTATGCC+TGG | 0.441380 | 2.3:+3164051 | MS.gene76565:CDS |
GTCGGACCTAACATACCTTT+AGG | 0.444099 | 2.3:+3163084 | MS.gene76565:CDS |
CCGACGATGAAGACGTATCC+AGG | 0.444921 | 2.3:-3164069 | None:intergenic |
AAGCCATCATTGTTTATAGT+TGG | 0.445942 | 2.3:-3163937 | None:intergenic |
GGTCCTATGCTTGCAGGAGG+TGG | 0.448207 | 2.3:+3163126 | MS.gene76565:CDS |
ATTCCAGACTCCGTCACAAT+TGG | 0.451819 | 2.3:+3163598 | MS.gene76565:CDS |
CGCTTATTACAGCTTTAAAG+AGG | 0.458236 | 2.3:-3163149 | None:intergenic |
ACTAAGACGCCGTATTGAGC+AGG | 0.462135 | 2.3:+3163660 | MS.gene76565:CDS |
ACCTTAGGAATTGGTGGAGT+GGG | 0.463973 | 2.3:+3162435 | MS.gene76565:intron |
GTATCTTGCCAAGTTAAATC+AGG | 0.470235 | 2.3:+3164203 | MS.gene76565:CDS |
CCATCATTGTTTATAGTTGG+AGG | 0.474622 | 2.3:-3163934 | None:intergenic |
ACGTGAAGTGCAGCGCCATA+AGG | 0.477916 | 2.3:-3164165 | None:intergenic |
AGTGTTGCTGGGAGTTTGCT+CGG | 0.481679 | 2.3:+3163976 | MS.gene76565:CDS |
CTTTAGGTGAAGTGGCATCT+AGG | 0.486875 | 2.3:+3163100 | MS.gene76565:CDS |
CCAGCAGAAGAAGGAGGTGG+TGG | 0.487742 | 2.3:+3163000 | MS.gene76565:CDS |
GGGGATTGCATTTGAATTGG+AGG | 0.489436 | 2.3:-3162053 | None:intergenic |
GAATCCTGAACTTGGTTATG+AGG | 0.491210 | 2.3:+3162147 | MS.gene76565:CDS |
GAGGAAGAATCTGAGAAGAT+TGG | 0.493380 | 2.3:-3162034 | None:intergenic |
CTAGATGCCACTTCACCTAA+AGG | 0.496058 | 2.3:-3163099 | None:intergenic |
TGGTTAACCTTAGGAATTGG+TGG | 0.501988 | 2.3:+3162429 | MS.gene76565:intron |
CTGCAACTGGATGTTTATAT+GGG | 0.502686 | 2.3:-3162219 | None:intergenic |
TAAAGGCCATCATCTATTGA+TGG | 0.507495 | 2.3:+3164011 | MS.gene76565:CDS |
ATTCATGAGAATCCTGAACT+TGG | 0.516390 | 2.3:+3162139 | MS.gene76565:CDS |
AAACATCCAGTTGCAGTGAC+AGG | 0.518282 | 2.3:+3162226 | MS.gene76565:CDS |
CCAGACTCCGTCACAATTGG+TGG | 0.521978 | 2.3:+3163601 | MS.gene76565:CDS |
ACAGGTGTTATTGGTTACAT+AGG | 0.522130 | 2.3:+3162244 | MS.gene76565:CDS |
GGTGAAGTGGCATCTAGGTC+AGG | 0.527865 | 2.3:+3163105 | MS.gene76565:CDS |
CTGATCCCATCAATAGATGA+TGG | 0.528032 | 2.3:-3164017 | None:intergenic |
GCTATATTTGGATTGCATGT+CGG | 0.530035 | 2.3:+3163066 | MS.gene76565:CDS |
ATTGTTTATAGTTGGAGGGC+AGG | 0.533896 | 2.3:-3163929 | None:intergenic |
CATCATTGTTTATAGTTGGA+GGG | 0.535379 | 2.3:-3163933 | None:intergenic |
TGGTACCTCCTGATTTAACT+TGG | 0.537496 | 2.3:-3164211 | None:intergenic |
CATGGATGCTCTTCTCATGC+AGG | 0.545031 | 2.3:+3162303 | MS.gene76565:CDS |
TGGCTAATTCCAGGAAGTTG+GGG | 0.550316 | 2.3:-3162072 | None:intergenic |
AGGCCACCTCCTGCAAGCAT+AGG | 0.551306 | 2.3:-3163129 | None:intergenic |
TAACATACCTTTAGGTGAAG+TGG | 0.552311 | 2.3:+3163092 | MS.gene76565:CDS |
GCTCTAAGAGCGACAAAAGG+AGG | 0.552904 | 2.3:-3162277 | None:intergenic |
ATACGTCTTCATCGTCGGAA+TGG | 0.554205 | 2.3:+3164074 | MS.gene76565:CDS |
CCTGGATACGTCTTCATCGT+CGG | 0.554573 | 2.3:+3164069 | MS.gene76565:CDS |
CCTCCAACTATAAACAATGA+TGG | 0.555815 | 2.3:+3163934 | MS.gene76565:CDS |
CAGCAGAAGAAGGAGGTGGT+GGG | 0.556101 | 2.3:+3163001 | MS.gene76565:CDS |
GGCTGATCCCCTTGACACCC+AGG | 0.556701 | 2.3:+3163269 | MS.gene76565:CDS |
ATTGGATGGTTGATATAAGG+AGG | 0.557920 | 2.3:+3162113 | MS.gene76565:CDS |
AGACTTTGCATTCTATCAAG+AGG | 0.559534 | 2.3:+3164041 | MS.gene76565:CDS |
AAAGGCCATCATCTATTGAT+GGG | 0.563107 | 2.3:+3164012 | MS.gene76565:CDS |
CATGTTGAGGATTGGCTGCA+TGG | 0.565648 | 2.3:-3163182 | None:intergenic |
GTCAATAGCATGTTGAGGAT+TGG | 0.566408 | 2.3:-3163190 | None:intergenic |
AGCAGAAGAAGGAGGTGGTG+GGG | 0.566893 | 2.3:+3163002 | MS.gene76565:CDS |
TGTCGCTCTTAGAGCTGACA+TGG | 0.574773 | 2.3:+3162285 | MS.gene76565:CDS |
CTCTTTAAAGCTGTAATAAG+CGG | 0.578968 | 2.3:+3163150 | MS.gene76565:CDS |
AGGACGGTATCTTGTCATCA+AGG | 0.582123 | 2.3:-3163909 | None:intergenic |
TCCTCAAAGGTTGTGACTGT+AGG | 0.582654 | 2.3:+3163544 | MS.gene76565:intron |
TCAGCTCTAAGAGCGACAAA+AGG | 0.584462 | 2.3:-3162280 | None:intergenic |
TAAAGCTGTAATAAGCGGCA+AGG | 0.586608 | 2.3:+3163155 | MS.gene76565:CDS |
CAACCAGCAGAAGAAGGAGG+TGG | 0.586751 | 2.3:+3162997 | MS.gene76565:CDS |
CTGTTGAACGTCTTAGGTCA+TGG | 0.595588 | 2.3:+3164106 | MS.gene76565:CDS |
GAGCATAAGAGTAAAGTGCC+TGG | 0.597679 | 2.3:+3162457 | MS.gene76565:CDS |
ACAACATATCGTTTCTCGCG+AGG | 0.602436 | 2.3:+3163248 | MS.gene76565:CDS |
GTAGGAAAGATTCAAGGAGG+TGG | 0.603869 | 2.3:+3163562 | MS.gene76565:CDS |
GTGACTGTAGGAAAGATTCA+AGG | 0.604494 | 2.3:+3163556 | MS.gene76565:CDS |
AACCTTAGGAATTGGTGGAG+TGG | 0.609555 | 2.3:+3162434 | MS.gene76565:intron |
TTTATAGTTGGAGGGCAGGA+CGG | 0.612350 | 2.3:-3163925 | None:intergenic |
CAACTTCCTGGAATTAGCCA+AGG | 0.621145 | 2.3:+3162075 | MS.gene76565:CDS |
TCAGGTCCTATGCTTGCAGG+AGG | 0.624384 | 2.3:+3163123 | MS.gene76565:CDS |
TAAGAGCGACAAAAGGAGGA+AGG | 0.625913 | 2.3:-3162273 | None:intergenic |
CATTCGAAGCCGCCAAAATG+GGG | 0.630255 | 2.3:-3163212 | None:intergenic |
GCTGTAATAAGCGGCAAGGG+AGG | 0.633306 | 2.3:+3163159 | MS.gene76565:CDS |
AAAGCTGTAATAAGCGGCAA+GGG | 0.635247 | 2.3:+3163156 | MS.gene76565:CDS |
TTTCAACCAGCAGAAGAAGG+AGG | 0.636316 | 2.3:+3162994 | MS.gene76565:CDS |
TTCACGTCTCATTAGCGACT+AGG | 0.637245 | 2.3:+3164181 | MS.gene76565:CDS |
ATGGGGTCAATAGCATGTTG+AGG | 0.637295 | 2.3:-3163195 | None:intergenic |
GAAGGTGCCACCAATTGTGA+CGG | 0.642404 | 2.3:-3163608 | None:intergenic |
TGGTGCTGCTAAGATCCTCA+AGG | 0.643332 | 2.3:+3162525 | MS.gene76565:CDS |
TCTTGCCAAGTTAAATCAGG+AGG | 0.665523 | 2.3:+3164206 | MS.gene76565:CDS |
GTTAAATCAGGAGGTACCAG+CGG | 0.693765 | 2.3:+3164215 | MS.gene76565:CDS |
CCTGGAAAGATGCATGCATG+TGG | 0.716940 | 2.3:+3162475 | MS.gene76565:CDS |
ACTGTAGGAAAGATTCAAGG+AGG | 0.754125 | 2.3:+3163559 | MS.gene76565:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTTTAAGCTTTAATTTTA+AGG | - | chr2.3:3162861-3162880 | None:intergenic | 10.0% |
!! | ATAAAATCCATGATAATATA+TGG | - | chr2.3:3162366-3162385 | None:intergenic | 15.0% |
!!! | ATTATCATGGATTTTATATT+AGG | + | chr2.3:3162369-3162388 | MS.gene76565:intron | 15.0% |
!!! | TTCATTGATGATTTTTTTTT+TGG | + | chr2.3:3162409-3162428 | MS.gene76565:intron | 15.0% |
!! | AAGAGATAATAAAGTTGAAA+AGG | + | chr2.3:3162658-3162677 | MS.gene76565:intron | 20.0% |
!! | TAAGCTTATAAGAACAAAAT+TGG | + | chr2.3:3162183-3162202 | MS.gene76565:CDS | 20.0% |
!!! | ATTATTTTCAATTACTTGTG+TGG | + | chr2.3:3162625-3162644 | MS.gene76565:intron | 20.0% |
!!! | ATTCCTTATTTTTTGGTAAA+GGG | + | chr2.3:3162955-3162974 | MS.gene76565:intron | 20.0% |
!!! | TAAAAAGCTTTGTATTCATT+TGG | + | chr2.3:3163325-3163344 | MS.gene76565:intron | 20.0% |
!!! | TGATATCATTCCTTATTTTT+TGG | + | chr2.3:3162948-3162967 | MS.gene76565:intron | 20.0% |
!!! | TTTTCAACCATATATTATCA+TGG | + | chr2.3:3162356-3162375 | MS.gene76565:intron | 20.0% |
!!! | TTTTTTTTTTGGTTAACCTT+AGG | + | chr2.3:3162420-3162439 | MS.gene76565:intron | 20.0% |
! | AAGTATAATATGCAGTGTTA+AGG | - | chr2.3:3162828-3162847 | None:intergenic | 25.0% |
! | AGAACAAAATTGGATGAATT+AGG | + | chr2.3:3162193-3162212 | MS.gene76565:CDS | 25.0% |
! | ATAATAAAGTTGAAAAGGTG+TGG | + | chr2.3:3162663-3162682 | MS.gene76565:intron | 25.0% |
! | ATCTCAATGATAACTAAAAC+AGG | - | chr2.3:3163800-3163819 | None:intergenic | 25.0% |
! | TAAAAAATTGCGAATGAATC+CGG | + | chr2.3:3162759-3162778 | MS.gene76565:intron | 25.0% |
! | TCCTAAAATAATATCCTCAA+AGG | + | chr2.3:3163531-3163550 | MS.gene76565:intron | 25.0% |
! | TGATATCACATATCCATAAA+AGG | - | chr2.3:3162936-3162955 | None:intergenic | 25.0% |
!! | TTTTACAATCACAATTCACA+AGG | - | chr2.3:3162744-3162763 | None:intergenic | 25.0% |
!! | TTTTGTTCTTATAAGCTTAC+TGG | - | chr2.3:3162182-3162201 | None:intergenic | 25.0% |
!!! | ACAATGATTTTTGAAATCTG+AGG | + | chr2.3:3163497-3163516 | MS.gene76565:intron | 25.0% |
!!! | ACATTTTTTTCTGAGTGTTT+TGG | + | chr2.3:3162333-3162352 | MS.gene76565:intron | 25.0% |
!!! | ACCTTTGAGGATATTATTTT+AGG | - | chr2.3:3163535-3163554 | None:intergenic | 25.0% |
!!! | CATTCCTTATTTTTTGGTAA+AGG | + | chr2.3:3162954-3162973 | MS.gene76565:intron | 25.0% |
!!! | TTATTTTTTGGTAAAGGGAA+CGG | + | chr2.3:3162960-3162979 | MS.gene76565:intron | 25.0% |
!!! | TTGTTGATTTTCGAATTGTT+AGG | + | chr2.3:3163757-3163776 | MS.gene76565:intron | 25.0% |
AAGCCATCATTGTTTATAGT+TGG | - | chr2.3:3163940-3163959 | None:intergenic | 30.0% | |
ATCACATATCCATAAAAGGA+TGG | - | chr2.3:3162932-3162951 | None:intergenic | 30.0% | |
ATGAAAAACAGTTACAGGTA+TGG | + | chr2.3:3162551-3162570 | MS.gene76565:intron | 30.0% | |
CATCATTGTTTATAGTTGGA+GGG | - | chr2.3:3163936-3163955 | None:intergenic | 30.0% | |
CTGTTTGAGGAAAAAAATGT+TGG | + | chr2.3:3163448-3163467 | MS.gene76565:intron | 30.0% | |
GAAAATGTCTCTGCTATATT+TGG | + | chr2.3:3163054-3163073 | MS.gene76565:CDS | 30.0% | |
GAATCATACAATACTCATGT+TGG | + | chr2.3:3163397-3163416 | MS.gene76565:intron | 30.0% | |
GTTCCCTTTACCAAAAAATA+AGG | - | chr2.3:3162961-3162980 | None:intergenic | 30.0% | |
TTGTAGTTTCTGCAATTCAA+TGG | - | chr2.3:3162711-3162730 | None:intergenic | 30.0% | |
! | ACGCTAAGTCTCTTTAATTT+CGG | + | chr2.3:3163828-3163847 | MS.gene76565:intron | 30.0% |
! | CTTTTCTTTCCATCCTTTTA+TGG | + | chr2.3:3162920-3162939 | MS.gene76565:intron | 30.0% |
! | TATAGCAGAGACATTTTCTA+AGG | - | chr2.3:3163052-3163071 | None:intergenic | 30.0% |
! | TTGATTGGATGGTTGATATA+AGG | + | chr2.3:3162110-3162129 | MS.gene76565:CDS | 30.0% |
!! | ATCTTCGTTGACTTTGAAAT+AGG | - | chr2.3:3164139-3164158 | None:intergenic | 30.0% |
!! | CTCTTTAAAGCTGTAATAAG+CGG | + | chr2.3:3163150-3163169 | MS.gene76565:CDS | 30.0% |
!! | TCCAGCATCTAAAATTTTCT+TGG | - | chr2.3:3163028-3163047 | None:intergenic | 30.0% |
!! | TCTTCGTTGACTTTGAAATA+GGG | - | chr2.3:3164138-3164157 | None:intergenic | 30.0% |
!! | TTTTGGTTAACCTTAGGAAT+TGG | + | chr2.3:3162426-3162445 | MS.gene76565:intron | 30.0% |
!!! | ACTATTTTCAAAGTGTTGCT+GGG | + | chr2.3:3163965-3163984 | MS.gene76565:CDS | 30.0% |
AAAGGCCATCATCTATTGAT+GGG | + | chr2.3:3164012-3164031 | MS.gene76565:CDS | 35.0% | |
AACGAAGATGTACTTCCTTA+TGG | + | chr2.3:3164150-3164169 | MS.gene76565:CDS | 35.0% | |
AATTCCTCATAACCAAGTTC+AGG | - | chr2.3:3162154-3162173 | None:intergenic | 35.0% | |
ACCATCCAATCAAAAACTTG+AGG | - | chr2.3:3162103-3162122 | None:intergenic | 35.0% | |
ACTGCAACTGGATGTTTATA+TGG | - | chr2.3:3162223-3162242 | None:intergenic | 35.0% | |
AGACTTTGCATTCTATCAAG+AGG | + | chr2.3:3164041-3164060 | MS.gene76565:CDS | 35.0% | |
AGCCAAAATATTTCGCAAGA+TGG | - | chr2.3:3163430-3163449 | None:intergenic | 35.0% | |
AGCTTTCTCTCAAAAATGCT+CGG | - | chr2.3:3163633-3163652 | None:intergenic | 35.0% | |
ATCAAAAACTTGAGGTTCCT+TGG | - | chr2.3:3162095-3162114 | None:intergenic | 35.0% | |
ATTCATGAGAATCCTGAACT+TGG | + | chr2.3:3162139-3162158 | MS.gene76565:CDS | 35.0% | |
CCATCATTGTTTATAGTTGG+AGG | - | chr2.3:3163937-3163956 | None:intergenic | 35.0% | |
CCTCCAACTATAAACAATGA+TGG | + | chr2.3:3163934-3163953 | MS.gene76565:CDS | 35.0% | |
CGTAAAAAACCTGCTCAATA+CGG | - | chr2.3:3163672-3163691 | None:intergenic | 35.0% | |
CTGCAACTGGATGTTTATAT+GGG | - | chr2.3:3162222-3162241 | None:intergenic | 35.0% | |
GATTGGTGTAGCAGATAAAA+AGG | - | chr2.3:3162020-3162039 | None:intergenic | 35.0% | |
GCTATATTTGGATTGCATGT+CGG | + | chr2.3:3163066-3163085 | MS.gene76565:CDS | 35.0% | |
GGAACATGAAAAACAGTTAC+AGG | + | chr2.3:3162546-3162565 | MS.gene76565:CDS | 35.0% | |
GTATCTTGCCAAGTTAAATC+AGG | + | chr2.3:3164203-3164222 | MS.gene76565:CDS | 35.0% | |
TAAAGGCCATCATCTATTGA+TGG | + | chr2.3:3164011-3164030 | MS.gene76565:CDS | 35.0% | |
TAACATACCTTTAGGTGAAG+TGG | + | chr2.3:3163092-3163111 | MS.gene76565:CDS | 35.0% | |
! | ACTTCACCTAAAGGTATGTT+AGG | - | chr2.3:3163093-3163112 | None:intergenic | 35.0% |
! | AGGAACCTCAAGTTTTTGAT+TGG | + | chr2.3:3162095-3162114 | MS.gene76565:CDS | 35.0% |
! | ATGAGTTGCAAGTTTTTACC+TGG | - | chr2.3:3163290-3163309 | None:intergenic | 35.0% |
! | ATTGGATGGTTGATATAAGG+AGG | + | chr2.3:3162113-3162132 | MS.gene76565:CDS | 35.0% |
! | CACCATCTTGCGAAATATTT+TGG | + | chr2.3:3163425-3163444 | MS.gene76565:intron | 35.0% |
! | CATGAGTATTGTATGATTCG+TGG | - | chr2.3:3163396-3163415 | None:intergenic | 35.0% |
! | CTCTTTAATTTCGGTCTTGT+AGG | + | chr2.3:3163837-3163856 | MS.gene76565:intron | 35.0% |
! | GAAAGAAAAGTATAATGCGC+AGG | - | chr2.3:3162910-3162929 | None:intergenic | 35.0% |
! | GCCAAGAAAATTTTAGATGC+TGG | + | chr2.3:3163024-3163043 | MS.gene76565:CDS | 35.0% |
! | GTTATTGGTTACATAGGAAC+TGG | + | chr2.3:3162250-3162269 | MS.gene76565:CDS | 35.0% |
! | TGAGTTGCAAGTTTTTACCT+GGG | - | chr2.3:3163289-3163308 | None:intergenic | 35.0% |
!! | ACAGGTGTTATTGGTTACAT+AGG | + | chr2.3:3162244-3162263 | MS.gene76565:CDS | 35.0% |
!! | ACCTCAAGTTTTTGATTGGA+TGG | + | chr2.3:3162099-3162118 | MS.gene76565:CDS | 35.0% |
!! | ACTGTTTTTCATGTTCCTTG+AGG | - | chr2.3:3162543-3162562 | None:intergenic | 35.0% |
!! | CGCTTATTACAGCTTTAAAG+AGG | - | chr2.3:3163152-3163171 | None:intergenic | 35.0% |
!!! | CGAAATATTTTGGCTGTTTG+AGG | + | chr2.3:3163435-3163454 | MS.gene76565:intron | 35.0% |
!!! | GACTATTTTCAAAGTGTTGC+TGG | + | chr2.3:3163964-3163983 | MS.gene76565:CDS | 35.0% |
AAAGAGACTTAGCGTGTAAC+AGG | - | chr2.3:3163823-3163842 | None:intergenic | 40.0% | |
AAAGCTGTAATAAGCGGCAA+GGG | + | chr2.3:3163156-3163175 | MS.gene76565:CDS | 40.0% | |
AAGACACGTTATTCATGACG+TGG | - | chr2.3:3163729-3163748 | None:intergenic | 40.0% | |
ACTGTAGGAAAGATTCAAGG+AGG | + | chr2.3:3163559-3163578 | MS.gene76565:CDS | 40.0% | |
ATGTCACTGTTGAACGTCTT+AGG | + | chr2.3:3164100-3164119 | MS.gene76565:CDS | 40.0% | |
ATTGTTTATAGTTGGAGGGC+AGG | - | chr2.3:3163932-3163951 | None:intergenic | 40.0% | |
CAATTGGGATGCTATAGTTG+CGG | + | chr2.3:3162790-3162809 | MS.gene76565:intron | 40.0% | |
CTGATCCCATCAATAGATGA+TGG | - | chr2.3:3164020-3164039 | None:intergenic | 40.0% | |
GAATCCTGAACTTGGTTATG+AGG | + | chr2.3:3162147-3162166 | MS.gene76565:CDS | 40.0% | |
GAGGAAGAATCTGAGAAGAT+TGG | - | chr2.3:3162037-3162056 | None:intergenic | 40.0% | |
GTCAATAGCATGTTGAGGAT+TGG | - | chr2.3:3163193-3163212 | None:intergenic | 40.0% | |
GTGACTGTAGGAAAGATTCA+AGG | + | chr2.3:3163556-3163575 | MS.gene76565:CDS | 40.0% | |
GTTGGGGATTGCATTTGAAT+TGG | - | chr2.3:3162059-3162078 | None:intergenic | 40.0% | |
TAAAGCTGTAATAAGCGGCA+AGG | + | chr2.3:3163155-3163174 | MS.gene76565:CDS | 40.0% | |
TCTTGCCAAGTTAAATCAGG+AGG | + | chr2.3:3164206-3164225 | MS.gene76565:CDS | 40.0% | |
TGGTACCTCCTGATTTAACT+TGG | - | chr2.3:3164214-3164233 | None:intergenic | 40.0% | |
TGGTTAACCTTAGGAATTGG+TGG | + | chr2.3:3162429-3162448 | MS.gene76565:intron | 40.0% | |
TTCTCTCAAAAATGCTCGGA+AGG | - | chr2.3:3163629-3163648 | None:intergenic | 40.0% | |
TTGGCTAATTCCAGGAAGTT+GGG | - | chr2.3:3162076-3162095 | None:intergenic | 40.0% | |
! | AAGTTTTTACCTGGGTGTCA+AGG | - | chr2.3:3163281-3163300 | None:intergenic | 40.0% |
! | ACATGCTATTGACCCCATTT+TGG | + | chr2.3:3163200-3163219 | MS.gene76565:CDS | 40.0% |
! | AGTTTTTACCTGGGTGTCAA+GGG | - | chr2.3:3163280-3163299 | None:intergenic | 40.0% |
! | TCGGTCTTGTAGGTTATCAT+TGG | + | chr2.3:3163847-3163866 | MS.gene76565:intron | 40.0% |
! | TGATATTTTCCATCTACCGC+TGG | - | chr2.3:3164234-3164253 | None:intergenic | 40.0% |
!! | CTCGGCGTTGATAAAGTTAA+AGG | + | chr2.3:3163994-3164013 | MS.gene76565:CDS | 40.0% |
!! | GTTTTTCAACCAGCAGAAGA+AGG | + | chr2.3:3162991-3163010 | MS.gene76565:CDS | 40.0% |
AAACATCCAGTTGCAGTGAC+AGG | + | chr2.3:3162226-3162245 | MS.gene76565:CDS | 45.0% | |
AAATGCAATCCCCAACTTCC+TGG | + | chr2.3:3162063-3162082 | MS.gene76565:CDS | 45.0% | |
AACCTTAGGAATTGGTGGAG+TGG | + | chr2.3:3162434-3162453 | MS.gene76565:intron | 45.0% | |
AATCCGGCTTACGTGCAATT+GGG | + | chr2.3:3162775-3162794 | MS.gene76565:intron | 45.0% | |
ACAACATATCGTTTCTCGCG+AGG | + | chr2.3:3163248-3163267 | MS.gene76565:CDS | 45.0% | |
ACATTCGAAGCCGCCAAAAT+GGG | - | chr2.3:3163216-3163235 | None:intergenic | 45.0% | |
ACCTTAGGAATTGGTGGAGT+GGG | + | chr2.3:3162435-3162454 | MS.gene76565:intron | 45.0% | |
AGGACGGTATCTTGTCATCA+AGG | - | chr2.3:3163912-3163931 | None:intergenic | 45.0% | |
ATAACACCTGTCACTGCAAC+TGG | - | chr2.3:3162235-3162254 | None:intergenic | 45.0% | |
ATAATGCGCAGGAGTCATCT+TGG | - | chr2.3:3162899-3162918 | None:intergenic | 45.0% | |
ATACGTCTTCATCGTCGGAA+TGG | + | chr2.3:3164074-3164093 | MS.gene76565:CDS | 45.0% | |
ATGGGGTCAATAGCATGTTG+AGG | - | chr2.3:3163198-3163217 | None:intergenic | 45.0% | |
ATTCCAGACTCCGTCACAAT+TGG | + | chr2.3:3163598-3163617 | MS.gene76565:CDS | 45.0% | |
CAACTTCCTGGAATTAGCCA+AGG | + | chr2.3:3162075-3162094 | MS.gene76565:CDS | 45.0% | |
CTGCAATTCAATGGCATGCT+TGG | - | chr2.3:3162702-3162721 | None:intergenic | 45.0% | |
CTGTTGAACGTCTTAGGTCA+TGG | + | chr2.3:3164106-3164125 | MS.gene76565:CDS | 45.0% | |
CTTGGCTAATTCCAGGAAGT+TGG | - | chr2.3:3162077-3162096 | None:intergenic | 45.0% | |
CTTTAGGTGAAGTGGCATCT+AGG | + | chr2.3:3163100-3163119 | MS.gene76565:CDS | 45.0% | |
GCTCATGTTGCTATGCTTCT+TGG | + | chr2.3:3162505-3162524 | MS.gene76565:CDS | 45.0% | |
GGGGATTGCATTTGAATTGG+AGG | - | chr2.3:3162056-3162075 | None:intergenic | 45.0% | |
GTAGGAAAGATTCAAGGAGG+TGG | + | chr2.3:3163562-3163581 | MS.gene76565:CDS | 45.0% | |
GTCGGACCTAACATACCTTT+AGG | + | chr2.3:3163084-3163103 | MS.gene76565:CDS | 45.0% | |
TAAGAGCGACAAAAGGAGGA+AGG | - | chr2.3:3162276-3162295 | None:intergenic | 45.0% | |
TCCTACAGTCACAACCTTTG+AGG | - | chr2.3:3163548-3163567 | None:intergenic | 45.0% | |
TCCTCAAAGGTTGTGACTGT+AGG | + | chr2.3:3163544-3163563 | MS.gene76565:intron | 45.0% | |
TGGCTAATTCCAGGAAGTTG+GGG | - | chr2.3:3162075-3162094 | None:intergenic | 45.0% | |
TTCACGTCTCATTAGCGACT+AGG | + | chr2.3:3164181-3164200 | MS.gene76565:CDS | 45.0% | |
TTCTATCAAGAGGCTATGCC+TGG | + | chr2.3:3164051-3164070 | MS.gene76565:CDS | 45.0% | |
TTTATAGTTGGAGGGCAGGA+CGG | - | chr2.3:3163928-3163947 | None:intergenic | 45.0% | |
TTTCAACCAGCAGAAGAAGG+AGG | + | chr2.3:3162994-3163013 | MS.gene76565:CDS | 45.0% | |
! | CTAGATGCCACTTCACCTAA+AGG | - | chr2.3:3163102-3163121 | None:intergenic | 45.0% |
! | GAGCATAAGAGTAAAGTGCC+TGG | + | chr2.3:3162457-3162476 | MS.gene76565:CDS | 45.0% |
! | GTTGCAGTGACAGGTGTTAT+TGG | + | chr2.3:3162235-3162254 | MS.gene76565:CDS | 45.0% |
! | GTTTTTACCTGGGTGTCAAG+GGG | - | chr2.3:3163279-3163298 | None:intergenic | 45.0% |
! | TGCTATTGACCCCATTTTGG+CGG | + | chr2.3:3163203-3163222 | MS.gene76565:CDS | 45.0% |
!! | GTTAAATCAGGAGGTACCAG+CGG | + | chr2.3:3164215-3164234 | MS.gene76565:CDS | 45.0% |
!! | TCAGCTCTAAGAGCGACAAA+AGG | - | chr2.3:3162283-3162302 | None:intergenic | 45.0% |
ACTAAGACGCCGTATTGAGC+AGG | + | chr2.3:3163660-3163679 | MS.gene76565:CDS | 50.0% | |
CACATTCGAAGCCGCCAAAA+TGG | - | chr2.3:3163217-3163236 | None:intergenic | 50.0% | |
CATCCCAATTGCACGTAAGC+CGG | - | chr2.3:3162781-3162800 | None:intergenic | 50.0% | |
CATGGATGCTCTTCTCATGC+AGG | + | chr2.3:3162303-3162322 | MS.gene76565:CDS | 50.0% | |
CATTCGAAGCCGCCAAAATG+GGG | - | chr2.3:3163215-3163234 | None:intergenic | 50.0% | |
CCACATGCATGCATCTTTCC+AGG | - | chr2.3:3162478-3162497 | None:intergenic | 50.0% | |
CCTGGAAAGATGCATGCATG+TGG | + | chr2.3:3162475-3162494 | MS.gene76565:CDS | 50.0% | |
CCTGGATACGTCTTCATCGT+CGG | + | chr2.3:3164069-3164088 | MS.gene76565:CDS | 50.0% | |
GAATCCGGCTTACGTGCAAT+TGG | + | chr2.3:3162774-3162793 | MS.gene76565:intron | 50.0% | |
GAGGTTCCTTGGCTAATTCC+AGG | - | chr2.3:3162084-3162103 | None:intergenic | 50.0% | |
GATGCTCTTCTCATGCAGGT+AGG | + | chr2.3:3162307-3162326 | MS.gene76565:intron | 50.0% | |
TCCCACTCCACCAATTCCTA+AGG | - | chr2.3:3162439-3162458 | None:intergenic | 50.0% | |
TGTCGCTCTTAGAGCTGACA+TGG | + | chr2.3:3162285-3162304 | MS.gene76565:CDS | 50.0% | |
! | AGTGTTGCTGGGAGTTTGCT+CGG | + | chr2.3:3163976-3163995 | MS.gene76565:CDS | 50.0% |
!! | CATGTTGAGGATTGGCTGCA+TGG | - | chr2.3:3163185-3163204 | None:intergenic | 50.0% |
!! | GAAGGTGCCACCAATTGTGA+CGG | - | chr2.3:3163611-3163630 | None:intergenic | 50.0% |
!! | GCTCTAAGAGCGACAAAAGG+AGG | - | chr2.3:3162280-3162299 | None:intergenic | 50.0% |
!! | TGGTGCTGCTAAGATCCTCA+AGG | + | chr2.3:3162525-3162544 | MS.gene76565:CDS | 50.0% |
ACGTGAAGTGCAGCGCCATA+AGG | - | chr2.3:3164168-3164187 | None:intergenic | 55.0% | |
AGCAGAAGAAGGAGGTGGTG+GGG | + | chr2.3:3163002-3163021 | MS.gene76565:CDS | 55.0% | |
AGGTCAGGTCCTATGCTTGC+AGG | + | chr2.3:3163120-3163139 | MS.gene76565:CDS | 55.0% | |
CAACCAGCAGAAGAAGGAGG+TGG | + | chr2.3:3162997-3163016 | MS.gene76565:CDS | 55.0% | |
CAGCAGAAGAAGGAGGTGGT+GGG | + | chr2.3:3163001-3163020 | MS.gene76565:CDS | 55.0% | |
CCAGACTCCGTCACAATTGG+TGG | + | chr2.3:3163601-3163620 | MS.gene76565:CDS | 55.0% | |
CCGACGATGAAGACGTATCC+AGG | - | chr2.3:3164072-3164091 | None:intergenic | 55.0% | |
GCTGTAATAAGCGGCAAGGG+AGG | + | chr2.3:3163159-3163178 | MS.gene76565:CDS | 55.0% | |
GGTGAAGTGGCATCTAGGTC+AGG | + | chr2.3:3163105-3163124 | MS.gene76565:CDS | 55.0% | |
TCAGGTCCTATGCTTGCAGG+AGG | + | chr2.3:3163123-3163142 | MS.gene76565:CDS | 55.0% | |
! | CCACCAATTGTGACGGAGTC+TGG | - | chr2.3:3163604-3163623 | None:intergenic | 55.0% |
AGGCCACCTCCTGCAAGCAT+AGG | - | chr2.3:3163132-3163151 | None:intergenic | 60.0% | |
CCACCACCTCCTTCTTCTGC+TGG | - | chr2.3:3163003-3163022 | None:intergenic | 60.0% | |
CCAGCAGAAGAAGGAGGTGG+TGG | + | chr2.3:3163000-3163019 | MS.gene76565:CDS | 60.0% | |
GGTCCTATGCTTGCAGGAGG+TGG | + | chr2.3:3163126-3163145 | MS.gene76565:CDS | 60.0% | |
!! | CAGGAGGTACCAGCGGTAGA+TGG | + | chr2.3:3164222-3164241 | MS.gene76565:CDS | 60.0% |
GGCTGATCCCCTTGACACCC+AGG | + | chr2.3:3163269-3163288 | MS.gene76565:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 3161971 | 3164266 | 3161971 | ID=MS.gene76565 |
chr2.3 | mRNA | 3161971 | 3164266 | 3161971 | ID=MS.gene76565.t1;Parent=MS.gene76565 |
chr2.3 | exon | 3161971 | 3162324 | 3161971 | ID=MS.gene76565.t1.exon1;Parent=MS.gene76565.t1 |
chr2.3 | CDS | 3161971 | 3162324 | 3161971 | ID=cds.MS.gene76565.t1;Parent=MS.gene76565.t1 |
chr2.3 | exon | 3162442 | 3162567 | 3162442 | ID=MS.gene76565.t1.exon2;Parent=MS.gene76565.t1 |
chr2.3 | CDS | 3162442 | 3162567 | 3162442 | ID=cds.MS.gene76565.t1;Parent=MS.gene76565.t1 |
chr2.3 | exon | 3162976 | 3163290 | 3162976 | ID=MS.gene76565.t1.exon3;Parent=MS.gene76565.t1 |
chr2.3 | CDS | 3162976 | 3163290 | 3162976 | ID=cds.MS.gene76565.t1;Parent=MS.gene76565.t1 |
chr2.3 | exon | 3163553 | 3163681 | 3163553 | ID=MS.gene76565.t1.exon4;Parent=MS.gene76565.t1 |
chr2.3 | CDS | 3163553 | 3163681 | 3163553 | ID=cds.MS.gene76565.t1;Parent=MS.gene76565.t1 |
chr2.3 | exon | 3163859 | 3164266 | 3163859 | ID=MS.gene76565.t1.exon5;Parent=MS.gene76565.t1 |
chr2.3 | CDS | 3163859 | 3164266 | 3163859 | ID=cds.MS.gene76565.t1;Parent=MS.gene76565.t1 |
Gene Sequence |
Protein sequence |