AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene76565


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76565.t1 MTR_2g097540 95.260 443 21 0 1 443 1 443 0.0 871
MS.gene76565.t1 MTR_2g100520 91.946 447 32 1 1 443 1 447 0.0 843
MS.gene76565.t1 MTR_2g100510 83.178 428 69 1 19 443 20 447 0.0 727
MS.gene76565.t1 MTR_2g097530 82.327 447 75 1 1 443 1 447 0.0 719
MS.gene76565.t1 MTR_2g100560 81.920 448 76 1 1 443 5 452 0.0 718
MS.gene76565.t1 MTR_8g015510 70.880 443 124 5 4 443 7 447 0.0 625
MS.gene76565.t1 MTR_8g015510 71.254 327 91 3 120 443 1 327 3.82e-162 460
MS.gene76565.t1 MTR_8g062790 52.941 425 197 2 1 424 2 424 1.67e-157 452
MS.gene76565.t1 MTR_3g088590 54.639 388 176 0 38 425 85 472 1.12e-155 449
MS.gene76565.t1 MTR_8g075310 52.404 416 178 4 9 421 15 413 6.54e-144 417
MS.gene76565.t1 MTR_3g093030 46.988 415 217 1 11 425 4 415 2.27e-135 395
MS.gene76565.t1 MTR_2g100550 97.484 159 4 0 1 159 1 159 1.35e-106 328
MS.gene76565.t1 MTR_8g063060 42.810 306 143 7 118 420 58 334 3.92e-68 222
MS.gene76565.t1 MTR_1g028070 66.667 114 38 0 151 264 14 127 2.19e-46 156
MS.gene76565.t1 MTR_3g077040 52.239 134 40 2 133 266 1 110 3.65e-34 124
MS.gene76565.t1 MTR_2g100530 92.857 56 4 0 388 443 14 69 1.37e-32 118
MS.gene76565.t1 MTR_3g093040 44.554 101 46 1 133 223 1 101 4.11e-19 88.2
MS.gene76565.t1 MTR_8g062090 48.246 114 21 3 159 266 29 110 6.30e-15 71.2
MS.gene76565.t1 MTR_1205s0010 27.976 168 115 3 247 413 1 163 1.03e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76565.t1 AT1G51760 67.832 429 136 1 1 429 1 427 0.0 602
MS.gene76565.t1 AT1G51780 64.554 426 147 2 1 425 1 423 0.0 560
MS.gene76565.t1 AT5G56660 62.010 408 150 4 36 443 37 439 0.0 519
MS.gene76565.t1 AT5G56650 62.255 408 149 4 36 443 36 438 0.0 517
MS.gene76565.t1 AT5G56650 71.273 275 77 1 36 310 36 308 1.49e-142 410
MS.gene76565.t1 AT3G02875 49.878 409 203 2 18 425 20 427 1.64e-139 407
MS.gene76565.t1 AT1G44350 51.546 388 183 1 38 425 77 459 6.68e-135 396
MS.gene76565.t1 AT5G54140 49.231 390 197 1 48 436 39 428 1.41e-133 391
MS.gene76565.t1 AT3G02875 54.452 292 133 0 18 309 20 311 1.24e-106 319
MS.gene76565.t1 AT3G02875 55.020 249 112 0 18 266 20 268 5.64e-91 278

Find 108 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATGTCTCTGCTATATT+TGG 0.126749 2.3:+3163054 MS.gene76565:CDS
CACATTCGAAGCCGCCAAAA+TGG 0.224265 2.3:-3163214 None:intergenic
ACATGCTATTGACCCCATTT+TGG 0.230672 2.3:+3163200 MS.gene76565:CDS
GCTCATGTTGCTATGCTTCT+TGG 0.234508 2.3:+3162505 MS.gene76565:CDS
ATCTTCGTTGACTTTGAAAT+AGG 0.251089 2.3:-3164136 None:intergenic
CTCGGCGTTGATAAAGTTAA+AGG 0.255745 2.3:+3163994 MS.gene76565:CDS
TAAGCTTATAAGAACAAAAT+TGG 0.272704 2.3:+3162183 MS.gene76565:CDS
ACTGCAACTGGATGTTTATA+TGG 0.283261 2.3:-3162220 None:intergenic
CCACCAATTGTGACGGAGTC+TGG 0.290981 2.3:-3163601 None:intergenic
GATTGGTGTAGCAGATAAAA+AGG 0.291090 2.3:-3162017 None:intergenic
GTTGCAGTGACAGGTGTTAT+TGG 0.296181 2.3:+3162235 MS.gene76565:CDS
TTGATTGGATGGTTGATATA+AGG 0.308095 2.3:+3162110 MS.gene76565:CDS
AAATGCAATCCCCAACTTCC+TGG 0.325097 2.3:+3162063 MS.gene76565:CDS
TCTTCGTTGACTTTGAAATA+GGG 0.331390 2.3:-3164135 None:intergenic
CCACCACCTCCTTCTTCTGC+TGG 0.334818 2.3:-3163000 None:intergenic
AGAACAAAATTGGATGAATT+AGG 0.334989 2.3:+3162193 MS.gene76565:CDS
AATTCCTCATAACCAAGTTC+AGG 0.364088 2.3:-3162151 None:intergenic
GTTGGGGATTGCATTTGAAT+TGG 0.365509 2.3:-3162056 None:intergenic
GAGGTTCCTTGGCTAATTCC+AGG 0.371441 2.3:-3162081 None:intergenic
TTGGCTAATTCCAGGAAGTT+GGG 0.376690 2.3:-3162073 None:intergenic
ATAACACCTGTCACTGCAAC+TGG 0.378254 2.3:-3162232 None:intergenic
TCGGTCTTGTAGGTTATCAT+TGG 0.395284 2.3:+3163847 MS.gene76565:intron
ACATTCGAAGCCGCCAAAAT+GGG 0.396292 2.3:-3163213 None:intergenic
AACGAAGATGTACTTCCTTA+TGG 0.401836 2.3:+3164150 MS.gene76565:CDS
CTTGGCTAATTCCAGGAAGT+TGG 0.410636 2.3:-3162074 None:intergenic
CCACATGCATGCATCTTTCC+AGG 0.410681 2.3:-3162475 None:intergenic
CAGGAGGTACCAGCGGTAGA+TGG 0.413359 2.3:+3164222 MS.gene76565:CDS
AGGTCAGGTCCTATGCTTGC+AGG 0.414114 2.3:+3163120 MS.gene76565:CDS
ACTTCACCTAAAGGTATGTT+AGG 0.418812 2.3:-3163090 None:intergenic
ATGTCACTGTTGAACGTCTT+AGG 0.432290 2.3:+3164100 MS.gene76565:CDS
GTTATTGGTTACATAGGAAC+TGG 0.439405 2.3:+3162250 MS.gene76565:CDS
TTCTATCAAGAGGCTATGCC+TGG 0.441380 2.3:+3164051 MS.gene76565:CDS
GTCGGACCTAACATACCTTT+AGG 0.444099 2.3:+3163084 MS.gene76565:CDS
CCGACGATGAAGACGTATCC+AGG 0.444921 2.3:-3164069 None:intergenic
AAGCCATCATTGTTTATAGT+TGG 0.445942 2.3:-3163937 None:intergenic
GGTCCTATGCTTGCAGGAGG+TGG 0.448207 2.3:+3163126 MS.gene76565:CDS
ATTCCAGACTCCGTCACAAT+TGG 0.451819 2.3:+3163598 MS.gene76565:CDS
CGCTTATTACAGCTTTAAAG+AGG 0.458236 2.3:-3163149 None:intergenic
ACTAAGACGCCGTATTGAGC+AGG 0.462135 2.3:+3163660 MS.gene76565:CDS
ACCTTAGGAATTGGTGGAGT+GGG 0.463973 2.3:+3162435 MS.gene76565:intron
GTATCTTGCCAAGTTAAATC+AGG 0.470235 2.3:+3164203 MS.gene76565:CDS
CCATCATTGTTTATAGTTGG+AGG 0.474622 2.3:-3163934 None:intergenic
ACGTGAAGTGCAGCGCCATA+AGG 0.477916 2.3:-3164165 None:intergenic
AGTGTTGCTGGGAGTTTGCT+CGG 0.481679 2.3:+3163976 MS.gene76565:CDS
CTTTAGGTGAAGTGGCATCT+AGG 0.486875 2.3:+3163100 MS.gene76565:CDS
CCAGCAGAAGAAGGAGGTGG+TGG 0.487742 2.3:+3163000 MS.gene76565:CDS
GGGGATTGCATTTGAATTGG+AGG 0.489436 2.3:-3162053 None:intergenic
GAATCCTGAACTTGGTTATG+AGG 0.491210 2.3:+3162147 MS.gene76565:CDS
GAGGAAGAATCTGAGAAGAT+TGG 0.493380 2.3:-3162034 None:intergenic
CTAGATGCCACTTCACCTAA+AGG 0.496058 2.3:-3163099 None:intergenic
TGGTTAACCTTAGGAATTGG+TGG 0.501988 2.3:+3162429 MS.gene76565:intron
CTGCAACTGGATGTTTATAT+GGG 0.502686 2.3:-3162219 None:intergenic
TAAAGGCCATCATCTATTGA+TGG 0.507495 2.3:+3164011 MS.gene76565:CDS
ATTCATGAGAATCCTGAACT+TGG 0.516390 2.3:+3162139 MS.gene76565:CDS
AAACATCCAGTTGCAGTGAC+AGG 0.518282 2.3:+3162226 MS.gene76565:CDS
CCAGACTCCGTCACAATTGG+TGG 0.521978 2.3:+3163601 MS.gene76565:CDS
ACAGGTGTTATTGGTTACAT+AGG 0.522130 2.3:+3162244 MS.gene76565:CDS
GGTGAAGTGGCATCTAGGTC+AGG 0.527865 2.3:+3163105 MS.gene76565:CDS
CTGATCCCATCAATAGATGA+TGG 0.528032 2.3:-3164017 None:intergenic
GCTATATTTGGATTGCATGT+CGG 0.530035 2.3:+3163066 MS.gene76565:CDS
ATTGTTTATAGTTGGAGGGC+AGG 0.533896 2.3:-3163929 None:intergenic
CATCATTGTTTATAGTTGGA+GGG 0.535379 2.3:-3163933 None:intergenic
TGGTACCTCCTGATTTAACT+TGG 0.537496 2.3:-3164211 None:intergenic
CATGGATGCTCTTCTCATGC+AGG 0.545031 2.3:+3162303 MS.gene76565:CDS
TGGCTAATTCCAGGAAGTTG+GGG 0.550316 2.3:-3162072 None:intergenic
AGGCCACCTCCTGCAAGCAT+AGG 0.551306 2.3:-3163129 None:intergenic
TAACATACCTTTAGGTGAAG+TGG 0.552311 2.3:+3163092 MS.gene76565:CDS
GCTCTAAGAGCGACAAAAGG+AGG 0.552904 2.3:-3162277 None:intergenic
ATACGTCTTCATCGTCGGAA+TGG 0.554205 2.3:+3164074 MS.gene76565:CDS
CCTGGATACGTCTTCATCGT+CGG 0.554573 2.3:+3164069 MS.gene76565:CDS
CCTCCAACTATAAACAATGA+TGG 0.555815 2.3:+3163934 MS.gene76565:CDS
CAGCAGAAGAAGGAGGTGGT+GGG 0.556101 2.3:+3163001 MS.gene76565:CDS
GGCTGATCCCCTTGACACCC+AGG 0.556701 2.3:+3163269 MS.gene76565:CDS
ATTGGATGGTTGATATAAGG+AGG 0.557920 2.3:+3162113 MS.gene76565:CDS
AGACTTTGCATTCTATCAAG+AGG 0.559534 2.3:+3164041 MS.gene76565:CDS
AAAGGCCATCATCTATTGAT+GGG 0.563107 2.3:+3164012 MS.gene76565:CDS
CATGTTGAGGATTGGCTGCA+TGG 0.565648 2.3:-3163182 None:intergenic
GTCAATAGCATGTTGAGGAT+TGG 0.566408 2.3:-3163190 None:intergenic
AGCAGAAGAAGGAGGTGGTG+GGG 0.566893 2.3:+3163002 MS.gene76565:CDS
TGTCGCTCTTAGAGCTGACA+TGG 0.574773 2.3:+3162285 MS.gene76565:CDS
CTCTTTAAAGCTGTAATAAG+CGG 0.578968 2.3:+3163150 MS.gene76565:CDS
AGGACGGTATCTTGTCATCA+AGG 0.582123 2.3:-3163909 None:intergenic
TCCTCAAAGGTTGTGACTGT+AGG 0.582654 2.3:+3163544 MS.gene76565:intron
TCAGCTCTAAGAGCGACAAA+AGG 0.584462 2.3:-3162280 None:intergenic
TAAAGCTGTAATAAGCGGCA+AGG 0.586608 2.3:+3163155 MS.gene76565:CDS
CAACCAGCAGAAGAAGGAGG+TGG 0.586751 2.3:+3162997 MS.gene76565:CDS
CTGTTGAACGTCTTAGGTCA+TGG 0.595588 2.3:+3164106 MS.gene76565:CDS
GAGCATAAGAGTAAAGTGCC+TGG 0.597679 2.3:+3162457 MS.gene76565:CDS
ACAACATATCGTTTCTCGCG+AGG 0.602436 2.3:+3163248 MS.gene76565:CDS
GTAGGAAAGATTCAAGGAGG+TGG 0.603869 2.3:+3163562 MS.gene76565:CDS
GTGACTGTAGGAAAGATTCA+AGG 0.604494 2.3:+3163556 MS.gene76565:CDS
AACCTTAGGAATTGGTGGAG+TGG 0.609555 2.3:+3162434 MS.gene76565:intron
TTTATAGTTGGAGGGCAGGA+CGG 0.612350 2.3:-3163925 None:intergenic
CAACTTCCTGGAATTAGCCA+AGG 0.621145 2.3:+3162075 MS.gene76565:CDS
TCAGGTCCTATGCTTGCAGG+AGG 0.624384 2.3:+3163123 MS.gene76565:CDS
TAAGAGCGACAAAAGGAGGA+AGG 0.625913 2.3:-3162273 None:intergenic
CATTCGAAGCCGCCAAAATG+GGG 0.630255 2.3:-3163212 None:intergenic
GCTGTAATAAGCGGCAAGGG+AGG 0.633306 2.3:+3163159 MS.gene76565:CDS
AAAGCTGTAATAAGCGGCAA+GGG 0.635247 2.3:+3163156 MS.gene76565:CDS
TTTCAACCAGCAGAAGAAGG+AGG 0.636316 2.3:+3162994 MS.gene76565:CDS
TTCACGTCTCATTAGCGACT+AGG 0.637245 2.3:+3164181 MS.gene76565:CDS
ATGGGGTCAATAGCATGTTG+AGG 0.637295 2.3:-3163195 None:intergenic
GAAGGTGCCACCAATTGTGA+CGG 0.642404 2.3:-3163608 None:intergenic
TGGTGCTGCTAAGATCCTCA+AGG 0.643332 2.3:+3162525 MS.gene76565:CDS
TCTTGCCAAGTTAAATCAGG+AGG 0.665523 2.3:+3164206 MS.gene76565:CDS
GTTAAATCAGGAGGTACCAG+CGG 0.693765 2.3:+3164215 MS.gene76565:CDS
CCTGGAAAGATGCATGCATG+TGG 0.716940 2.3:+3162475 MS.gene76565:CDS
ACTGTAGGAAAGATTCAAGG+AGG 0.754125 2.3:+3163559 MS.gene76565:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTAAGCTTTAATTTTA+AGG - chr2.3:3162861-3162880 None:intergenic 10.0%
!! ATAAAATCCATGATAATATA+TGG - chr2.3:3162366-3162385 None:intergenic 15.0%
!!! ATTATCATGGATTTTATATT+AGG + chr2.3:3162369-3162388 MS.gene76565:intron 15.0%
!!! TTCATTGATGATTTTTTTTT+TGG + chr2.3:3162409-3162428 MS.gene76565:intron 15.0%
!! AAGAGATAATAAAGTTGAAA+AGG + chr2.3:3162658-3162677 MS.gene76565:intron 20.0%
!! TAAGCTTATAAGAACAAAAT+TGG + chr2.3:3162183-3162202 MS.gene76565:CDS 20.0%
!!! ATTATTTTCAATTACTTGTG+TGG + chr2.3:3162625-3162644 MS.gene76565:intron 20.0%
!!! ATTCCTTATTTTTTGGTAAA+GGG + chr2.3:3162955-3162974 MS.gene76565:intron 20.0%
!!! TAAAAAGCTTTGTATTCATT+TGG + chr2.3:3163325-3163344 MS.gene76565:intron 20.0%
!!! TGATATCATTCCTTATTTTT+TGG + chr2.3:3162948-3162967 MS.gene76565:intron 20.0%
!!! TTTTCAACCATATATTATCA+TGG + chr2.3:3162356-3162375 MS.gene76565:intron 20.0%
!!! TTTTTTTTTTGGTTAACCTT+AGG + chr2.3:3162420-3162439 MS.gene76565:intron 20.0%
! AAGTATAATATGCAGTGTTA+AGG - chr2.3:3162828-3162847 None:intergenic 25.0%
! AGAACAAAATTGGATGAATT+AGG + chr2.3:3162193-3162212 MS.gene76565:CDS 25.0%
! ATAATAAAGTTGAAAAGGTG+TGG + chr2.3:3162663-3162682 MS.gene76565:intron 25.0%
! ATCTCAATGATAACTAAAAC+AGG - chr2.3:3163800-3163819 None:intergenic 25.0%
! TAAAAAATTGCGAATGAATC+CGG + chr2.3:3162759-3162778 MS.gene76565:intron 25.0%
! TCCTAAAATAATATCCTCAA+AGG + chr2.3:3163531-3163550 MS.gene76565:intron 25.0%
! TGATATCACATATCCATAAA+AGG - chr2.3:3162936-3162955 None:intergenic 25.0%
!! TTTTACAATCACAATTCACA+AGG - chr2.3:3162744-3162763 None:intergenic 25.0%
!! TTTTGTTCTTATAAGCTTAC+TGG - chr2.3:3162182-3162201 None:intergenic 25.0%
!!! ACAATGATTTTTGAAATCTG+AGG + chr2.3:3163497-3163516 MS.gene76565:intron 25.0%
!!! ACATTTTTTTCTGAGTGTTT+TGG + chr2.3:3162333-3162352 MS.gene76565:intron 25.0%
!!! ACCTTTGAGGATATTATTTT+AGG - chr2.3:3163535-3163554 None:intergenic 25.0%
!!! CATTCCTTATTTTTTGGTAA+AGG + chr2.3:3162954-3162973 MS.gene76565:intron 25.0%
!!! TTATTTTTTGGTAAAGGGAA+CGG + chr2.3:3162960-3162979 MS.gene76565:intron 25.0%
!!! TTGTTGATTTTCGAATTGTT+AGG + chr2.3:3163757-3163776 MS.gene76565:intron 25.0%
AAGCCATCATTGTTTATAGT+TGG - chr2.3:3163940-3163959 None:intergenic 30.0%
ATCACATATCCATAAAAGGA+TGG - chr2.3:3162932-3162951 None:intergenic 30.0%
ATGAAAAACAGTTACAGGTA+TGG + chr2.3:3162551-3162570 MS.gene76565:intron 30.0%
CATCATTGTTTATAGTTGGA+GGG - chr2.3:3163936-3163955 None:intergenic 30.0%
CTGTTTGAGGAAAAAAATGT+TGG + chr2.3:3163448-3163467 MS.gene76565:intron 30.0%
GAAAATGTCTCTGCTATATT+TGG + chr2.3:3163054-3163073 MS.gene76565:CDS 30.0%
GAATCATACAATACTCATGT+TGG + chr2.3:3163397-3163416 MS.gene76565:intron 30.0%
GTTCCCTTTACCAAAAAATA+AGG - chr2.3:3162961-3162980 None:intergenic 30.0%
TTGTAGTTTCTGCAATTCAA+TGG - chr2.3:3162711-3162730 None:intergenic 30.0%
! ACGCTAAGTCTCTTTAATTT+CGG + chr2.3:3163828-3163847 MS.gene76565:intron 30.0%
! CTTTTCTTTCCATCCTTTTA+TGG + chr2.3:3162920-3162939 MS.gene76565:intron 30.0%
! TATAGCAGAGACATTTTCTA+AGG - chr2.3:3163052-3163071 None:intergenic 30.0%
! TTGATTGGATGGTTGATATA+AGG + chr2.3:3162110-3162129 MS.gene76565:CDS 30.0%
!! ATCTTCGTTGACTTTGAAAT+AGG - chr2.3:3164139-3164158 None:intergenic 30.0%
!! CTCTTTAAAGCTGTAATAAG+CGG + chr2.3:3163150-3163169 MS.gene76565:CDS 30.0%
!! TCCAGCATCTAAAATTTTCT+TGG - chr2.3:3163028-3163047 None:intergenic 30.0%
!! TCTTCGTTGACTTTGAAATA+GGG - chr2.3:3164138-3164157 None:intergenic 30.0%
!! TTTTGGTTAACCTTAGGAAT+TGG + chr2.3:3162426-3162445 MS.gene76565:intron 30.0%
!!! ACTATTTTCAAAGTGTTGCT+GGG + chr2.3:3163965-3163984 MS.gene76565:CDS 30.0%
AAAGGCCATCATCTATTGAT+GGG + chr2.3:3164012-3164031 MS.gene76565:CDS 35.0%
AACGAAGATGTACTTCCTTA+TGG + chr2.3:3164150-3164169 MS.gene76565:CDS 35.0%
AATTCCTCATAACCAAGTTC+AGG - chr2.3:3162154-3162173 None:intergenic 35.0%
ACCATCCAATCAAAAACTTG+AGG - chr2.3:3162103-3162122 None:intergenic 35.0%
ACTGCAACTGGATGTTTATA+TGG - chr2.3:3162223-3162242 None:intergenic 35.0%
AGACTTTGCATTCTATCAAG+AGG + chr2.3:3164041-3164060 MS.gene76565:CDS 35.0%
AGCCAAAATATTTCGCAAGA+TGG - chr2.3:3163430-3163449 None:intergenic 35.0%
AGCTTTCTCTCAAAAATGCT+CGG - chr2.3:3163633-3163652 None:intergenic 35.0%
ATCAAAAACTTGAGGTTCCT+TGG - chr2.3:3162095-3162114 None:intergenic 35.0%
ATTCATGAGAATCCTGAACT+TGG + chr2.3:3162139-3162158 MS.gene76565:CDS 35.0%
CCATCATTGTTTATAGTTGG+AGG - chr2.3:3163937-3163956 None:intergenic 35.0%
CCTCCAACTATAAACAATGA+TGG + chr2.3:3163934-3163953 MS.gene76565:CDS 35.0%
CGTAAAAAACCTGCTCAATA+CGG - chr2.3:3163672-3163691 None:intergenic 35.0%
CTGCAACTGGATGTTTATAT+GGG - chr2.3:3162222-3162241 None:intergenic 35.0%
GATTGGTGTAGCAGATAAAA+AGG - chr2.3:3162020-3162039 None:intergenic 35.0%
GCTATATTTGGATTGCATGT+CGG + chr2.3:3163066-3163085 MS.gene76565:CDS 35.0%
GGAACATGAAAAACAGTTAC+AGG + chr2.3:3162546-3162565 MS.gene76565:CDS 35.0%
GTATCTTGCCAAGTTAAATC+AGG + chr2.3:3164203-3164222 MS.gene76565:CDS 35.0%
TAAAGGCCATCATCTATTGA+TGG + chr2.3:3164011-3164030 MS.gene76565:CDS 35.0%
TAACATACCTTTAGGTGAAG+TGG + chr2.3:3163092-3163111 MS.gene76565:CDS 35.0%
! ACTTCACCTAAAGGTATGTT+AGG - chr2.3:3163093-3163112 None:intergenic 35.0%
! AGGAACCTCAAGTTTTTGAT+TGG + chr2.3:3162095-3162114 MS.gene76565:CDS 35.0%
! ATGAGTTGCAAGTTTTTACC+TGG - chr2.3:3163290-3163309 None:intergenic 35.0%
! ATTGGATGGTTGATATAAGG+AGG + chr2.3:3162113-3162132 MS.gene76565:CDS 35.0%
! CACCATCTTGCGAAATATTT+TGG + chr2.3:3163425-3163444 MS.gene76565:intron 35.0%
! CATGAGTATTGTATGATTCG+TGG - chr2.3:3163396-3163415 None:intergenic 35.0%
! CTCTTTAATTTCGGTCTTGT+AGG + chr2.3:3163837-3163856 MS.gene76565:intron 35.0%
! GAAAGAAAAGTATAATGCGC+AGG - chr2.3:3162910-3162929 None:intergenic 35.0%
! GCCAAGAAAATTTTAGATGC+TGG + chr2.3:3163024-3163043 MS.gene76565:CDS 35.0%
! GTTATTGGTTACATAGGAAC+TGG + chr2.3:3162250-3162269 MS.gene76565:CDS 35.0%
! TGAGTTGCAAGTTTTTACCT+GGG - chr2.3:3163289-3163308 None:intergenic 35.0%
!! ACAGGTGTTATTGGTTACAT+AGG + chr2.3:3162244-3162263 MS.gene76565:CDS 35.0%
!! ACCTCAAGTTTTTGATTGGA+TGG + chr2.3:3162099-3162118 MS.gene76565:CDS 35.0%
!! ACTGTTTTTCATGTTCCTTG+AGG - chr2.3:3162543-3162562 None:intergenic 35.0%
!! CGCTTATTACAGCTTTAAAG+AGG - chr2.3:3163152-3163171 None:intergenic 35.0%
!!! CGAAATATTTTGGCTGTTTG+AGG + chr2.3:3163435-3163454 MS.gene76565:intron 35.0%
!!! GACTATTTTCAAAGTGTTGC+TGG + chr2.3:3163964-3163983 MS.gene76565:CDS 35.0%
AAAGAGACTTAGCGTGTAAC+AGG - chr2.3:3163823-3163842 None:intergenic 40.0%
AAAGCTGTAATAAGCGGCAA+GGG + chr2.3:3163156-3163175 MS.gene76565:CDS 40.0%
AAGACACGTTATTCATGACG+TGG - chr2.3:3163729-3163748 None:intergenic 40.0%
ACTGTAGGAAAGATTCAAGG+AGG + chr2.3:3163559-3163578 MS.gene76565:CDS 40.0%
ATGTCACTGTTGAACGTCTT+AGG + chr2.3:3164100-3164119 MS.gene76565:CDS 40.0%
ATTGTTTATAGTTGGAGGGC+AGG - chr2.3:3163932-3163951 None:intergenic 40.0%
CAATTGGGATGCTATAGTTG+CGG + chr2.3:3162790-3162809 MS.gene76565:intron 40.0%
CTGATCCCATCAATAGATGA+TGG - chr2.3:3164020-3164039 None:intergenic 40.0%
GAATCCTGAACTTGGTTATG+AGG + chr2.3:3162147-3162166 MS.gene76565:CDS 40.0%
GAGGAAGAATCTGAGAAGAT+TGG - chr2.3:3162037-3162056 None:intergenic 40.0%
GTCAATAGCATGTTGAGGAT+TGG - chr2.3:3163193-3163212 None:intergenic 40.0%
GTGACTGTAGGAAAGATTCA+AGG + chr2.3:3163556-3163575 MS.gene76565:CDS 40.0%
GTTGGGGATTGCATTTGAAT+TGG - chr2.3:3162059-3162078 None:intergenic 40.0%
TAAAGCTGTAATAAGCGGCA+AGG + chr2.3:3163155-3163174 MS.gene76565:CDS 40.0%
TCTTGCCAAGTTAAATCAGG+AGG + chr2.3:3164206-3164225 MS.gene76565:CDS 40.0%
TGGTACCTCCTGATTTAACT+TGG - chr2.3:3164214-3164233 None:intergenic 40.0%
TGGTTAACCTTAGGAATTGG+TGG + chr2.3:3162429-3162448 MS.gene76565:intron 40.0%
TTCTCTCAAAAATGCTCGGA+AGG - chr2.3:3163629-3163648 None:intergenic 40.0%
TTGGCTAATTCCAGGAAGTT+GGG - chr2.3:3162076-3162095 None:intergenic 40.0%
! AAGTTTTTACCTGGGTGTCA+AGG - chr2.3:3163281-3163300 None:intergenic 40.0%
! ACATGCTATTGACCCCATTT+TGG + chr2.3:3163200-3163219 MS.gene76565:CDS 40.0%
! AGTTTTTACCTGGGTGTCAA+GGG - chr2.3:3163280-3163299 None:intergenic 40.0%
! TCGGTCTTGTAGGTTATCAT+TGG + chr2.3:3163847-3163866 MS.gene76565:intron 40.0%
! TGATATTTTCCATCTACCGC+TGG - chr2.3:3164234-3164253 None:intergenic 40.0%
!! CTCGGCGTTGATAAAGTTAA+AGG + chr2.3:3163994-3164013 MS.gene76565:CDS 40.0%
!! GTTTTTCAACCAGCAGAAGA+AGG + chr2.3:3162991-3163010 MS.gene76565:CDS 40.0%
AAACATCCAGTTGCAGTGAC+AGG + chr2.3:3162226-3162245 MS.gene76565:CDS 45.0%
AAATGCAATCCCCAACTTCC+TGG + chr2.3:3162063-3162082 MS.gene76565:CDS 45.0%
AACCTTAGGAATTGGTGGAG+TGG + chr2.3:3162434-3162453 MS.gene76565:intron 45.0%
AATCCGGCTTACGTGCAATT+GGG + chr2.3:3162775-3162794 MS.gene76565:intron 45.0%
ACAACATATCGTTTCTCGCG+AGG + chr2.3:3163248-3163267 MS.gene76565:CDS 45.0%
ACATTCGAAGCCGCCAAAAT+GGG - chr2.3:3163216-3163235 None:intergenic 45.0%
ACCTTAGGAATTGGTGGAGT+GGG + chr2.3:3162435-3162454 MS.gene76565:intron 45.0%
AGGACGGTATCTTGTCATCA+AGG - chr2.3:3163912-3163931 None:intergenic 45.0%
ATAACACCTGTCACTGCAAC+TGG - chr2.3:3162235-3162254 None:intergenic 45.0%
ATAATGCGCAGGAGTCATCT+TGG - chr2.3:3162899-3162918 None:intergenic 45.0%
ATACGTCTTCATCGTCGGAA+TGG + chr2.3:3164074-3164093 MS.gene76565:CDS 45.0%
ATGGGGTCAATAGCATGTTG+AGG - chr2.3:3163198-3163217 None:intergenic 45.0%
ATTCCAGACTCCGTCACAAT+TGG + chr2.3:3163598-3163617 MS.gene76565:CDS 45.0%
CAACTTCCTGGAATTAGCCA+AGG + chr2.3:3162075-3162094 MS.gene76565:CDS 45.0%
CTGCAATTCAATGGCATGCT+TGG - chr2.3:3162702-3162721 None:intergenic 45.0%
CTGTTGAACGTCTTAGGTCA+TGG + chr2.3:3164106-3164125 MS.gene76565:CDS 45.0%
CTTGGCTAATTCCAGGAAGT+TGG - chr2.3:3162077-3162096 None:intergenic 45.0%
CTTTAGGTGAAGTGGCATCT+AGG + chr2.3:3163100-3163119 MS.gene76565:CDS 45.0%
GCTCATGTTGCTATGCTTCT+TGG + chr2.3:3162505-3162524 MS.gene76565:CDS 45.0%
GGGGATTGCATTTGAATTGG+AGG - chr2.3:3162056-3162075 None:intergenic 45.0%
GTAGGAAAGATTCAAGGAGG+TGG + chr2.3:3163562-3163581 MS.gene76565:CDS 45.0%
GTCGGACCTAACATACCTTT+AGG + chr2.3:3163084-3163103 MS.gene76565:CDS 45.0%
TAAGAGCGACAAAAGGAGGA+AGG - chr2.3:3162276-3162295 None:intergenic 45.0%
TCCTACAGTCACAACCTTTG+AGG - chr2.3:3163548-3163567 None:intergenic 45.0%
TCCTCAAAGGTTGTGACTGT+AGG + chr2.3:3163544-3163563 MS.gene76565:intron 45.0%
TGGCTAATTCCAGGAAGTTG+GGG - chr2.3:3162075-3162094 None:intergenic 45.0%
TTCACGTCTCATTAGCGACT+AGG + chr2.3:3164181-3164200 MS.gene76565:CDS 45.0%
TTCTATCAAGAGGCTATGCC+TGG + chr2.3:3164051-3164070 MS.gene76565:CDS 45.0%
TTTATAGTTGGAGGGCAGGA+CGG - chr2.3:3163928-3163947 None:intergenic 45.0%
TTTCAACCAGCAGAAGAAGG+AGG + chr2.3:3162994-3163013 MS.gene76565:CDS 45.0%
! CTAGATGCCACTTCACCTAA+AGG - chr2.3:3163102-3163121 None:intergenic 45.0%
! GAGCATAAGAGTAAAGTGCC+TGG + chr2.3:3162457-3162476 MS.gene76565:CDS 45.0%
! GTTGCAGTGACAGGTGTTAT+TGG + chr2.3:3162235-3162254 MS.gene76565:CDS 45.0%
! GTTTTTACCTGGGTGTCAAG+GGG - chr2.3:3163279-3163298 None:intergenic 45.0%
! TGCTATTGACCCCATTTTGG+CGG + chr2.3:3163203-3163222 MS.gene76565:CDS 45.0%
!! GTTAAATCAGGAGGTACCAG+CGG + chr2.3:3164215-3164234 MS.gene76565:CDS 45.0%
!! TCAGCTCTAAGAGCGACAAA+AGG - chr2.3:3162283-3162302 None:intergenic 45.0%
ACTAAGACGCCGTATTGAGC+AGG + chr2.3:3163660-3163679 MS.gene76565:CDS 50.0%
CACATTCGAAGCCGCCAAAA+TGG - chr2.3:3163217-3163236 None:intergenic 50.0%
CATCCCAATTGCACGTAAGC+CGG - chr2.3:3162781-3162800 None:intergenic 50.0%
CATGGATGCTCTTCTCATGC+AGG + chr2.3:3162303-3162322 MS.gene76565:CDS 50.0%
CATTCGAAGCCGCCAAAATG+GGG - chr2.3:3163215-3163234 None:intergenic 50.0%
CCACATGCATGCATCTTTCC+AGG - chr2.3:3162478-3162497 None:intergenic 50.0%
CCTGGAAAGATGCATGCATG+TGG + chr2.3:3162475-3162494 MS.gene76565:CDS 50.0%
CCTGGATACGTCTTCATCGT+CGG + chr2.3:3164069-3164088 MS.gene76565:CDS 50.0%
GAATCCGGCTTACGTGCAAT+TGG + chr2.3:3162774-3162793 MS.gene76565:intron 50.0%
GAGGTTCCTTGGCTAATTCC+AGG - chr2.3:3162084-3162103 None:intergenic 50.0%
GATGCTCTTCTCATGCAGGT+AGG + chr2.3:3162307-3162326 MS.gene76565:intron 50.0%
TCCCACTCCACCAATTCCTA+AGG - chr2.3:3162439-3162458 None:intergenic 50.0%
TGTCGCTCTTAGAGCTGACA+TGG + chr2.3:3162285-3162304 MS.gene76565:CDS 50.0%
! AGTGTTGCTGGGAGTTTGCT+CGG + chr2.3:3163976-3163995 MS.gene76565:CDS 50.0%
!! CATGTTGAGGATTGGCTGCA+TGG - chr2.3:3163185-3163204 None:intergenic 50.0%
!! GAAGGTGCCACCAATTGTGA+CGG - chr2.3:3163611-3163630 None:intergenic 50.0%
!! GCTCTAAGAGCGACAAAAGG+AGG - chr2.3:3162280-3162299 None:intergenic 50.0%
!! TGGTGCTGCTAAGATCCTCA+AGG + chr2.3:3162525-3162544 MS.gene76565:CDS 50.0%
ACGTGAAGTGCAGCGCCATA+AGG - chr2.3:3164168-3164187 None:intergenic 55.0%
AGCAGAAGAAGGAGGTGGTG+GGG + chr2.3:3163002-3163021 MS.gene76565:CDS 55.0%
AGGTCAGGTCCTATGCTTGC+AGG + chr2.3:3163120-3163139 MS.gene76565:CDS 55.0%
CAACCAGCAGAAGAAGGAGG+TGG + chr2.3:3162997-3163016 MS.gene76565:CDS 55.0%
CAGCAGAAGAAGGAGGTGGT+GGG + chr2.3:3163001-3163020 MS.gene76565:CDS 55.0%
CCAGACTCCGTCACAATTGG+TGG + chr2.3:3163601-3163620 MS.gene76565:CDS 55.0%
CCGACGATGAAGACGTATCC+AGG - chr2.3:3164072-3164091 None:intergenic 55.0%
GCTGTAATAAGCGGCAAGGG+AGG + chr2.3:3163159-3163178 MS.gene76565:CDS 55.0%
GGTGAAGTGGCATCTAGGTC+AGG + chr2.3:3163105-3163124 MS.gene76565:CDS 55.0%
TCAGGTCCTATGCTTGCAGG+AGG + chr2.3:3163123-3163142 MS.gene76565:CDS 55.0%
! CCACCAATTGTGACGGAGTC+TGG - chr2.3:3163604-3163623 None:intergenic 55.0%
AGGCCACCTCCTGCAAGCAT+AGG - chr2.3:3163132-3163151 None:intergenic 60.0%
CCACCACCTCCTTCTTCTGC+TGG - chr2.3:3163003-3163022 None:intergenic 60.0%
CCAGCAGAAGAAGGAGGTGG+TGG + chr2.3:3163000-3163019 MS.gene76565:CDS 60.0%
GGTCCTATGCTTGCAGGAGG+TGG + chr2.3:3163126-3163145 MS.gene76565:CDS 60.0%
!! CAGGAGGTACCAGCGGTAGA+TGG + chr2.3:3164222-3164241 MS.gene76565:CDS 60.0%
GGCTGATCCCCTTGACACCC+AGG + chr2.3:3163269-3163288 MS.gene76565:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 3161971 3164266 3161971 ID=MS.gene76565
chr2.3 mRNA 3161971 3164266 3161971 ID=MS.gene76565.t1;Parent=MS.gene76565
chr2.3 exon 3161971 3162324 3161971 ID=MS.gene76565.t1.exon1;Parent=MS.gene76565.t1
chr2.3 CDS 3161971 3162324 3161971 ID=cds.MS.gene76565.t1;Parent=MS.gene76565.t1
chr2.3 exon 3162442 3162567 3162442 ID=MS.gene76565.t1.exon2;Parent=MS.gene76565.t1
chr2.3 CDS 3162442 3162567 3162442 ID=cds.MS.gene76565.t1;Parent=MS.gene76565.t1
chr2.3 exon 3162976 3163290 3162976 ID=MS.gene76565.t1.exon3;Parent=MS.gene76565.t1
chr2.3 CDS 3162976 3163290 3162976 ID=cds.MS.gene76565.t1;Parent=MS.gene76565.t1
chr2.3 exon 3163553 3163681 3163553 ID=MS.gene76565.t1.exon4;Parent=MS.gene76565.t1
chr2.3 CDS 3163553 3163681 3163553 ID=cds.MS.gene76565.t1;Parent=MS.gene76565.t1
chr2.3 exon 3163859 3164266 3163859 ID=MS.gene76565.t1.exon5;Parent=MS.gene76565.t1
chr2.3 CDS 3163859 3164266 3163859 ID=cds.MS.gene76565.t1;Parent=MS.gene76565.t1
Gene Sequence

>MS.gene76565

ATGGATTTCTTCAAATGTGTCAAGTTGTTCATCATCATTTTCATTTCCTTTTTATCTGCTACACCAATCTTCTCAGATTCTTCCTCCAATTCAAATGCAATCCCCAACTTCCTGGAATTAGCCAAGGAACCTCAAGTTTTTGATTGGATGGTTGATATAAGGAGGAAGATTCATGAGAATCCTGAACTTGGTTATGAGGAATTTGAAACCAGTAAGCTTATAAGAACAAAATTGGATGAATTAGGTGTCCCATATAAACATCCAGTTGCAGTGACAGGTGTTATTGGTTACATAGGAACTGGCCTTCCTCCTTTTGTCGCTCTTAGAGCTGACATGGATGCTCTTCTCATGCAGGTAGGTCTACATTTTTTTCTGAGTGTTTTGGTTTTCAACCATATATTATCATGGATTTTATATTAGGATACTCTTCATCTATATTTCATTGATGATTTTTTTTTTGGTTAACCTTAGGAATTGGTGGAGTGGGAGCATAAGAGTAAAGTGCCTGGAAAGATGCATGCATGTGGTCATGATGCTCATGTTGCTATGCTTCTTGGTGCTGCTAAGATCCTCAAGGAACATGAAAAACAGTTACAGGTATGGTTTTTAAATTGTGCGTTAAAACTTTAAAGTGTATTGTTTTTGCTTTATTTTATTATTTTCAATTACTTGTGTGGAGAAAATAAAAAGAGATAATAAAGTTGAAAAGGTGTGGTGTTGTCTTCAAACCAAGCATGCCATTGAATTGCAGAAACTACAAACATTGTGATCCTTGTGAATTGTGATTGTAAAAAATTGCGAATGAATCCGGCTTACGTGCAATTGGGATGCTATAGTTGCGGAAATTTTTTAAACCTTAACACTGCATATTATACTTTTCTTTTCATCCTTAAAATTAAAGCTTAAAATTGCAGAAACTACTATACCAAGATGACTCCTGCGCATTATACTTTTCTTTCCATCCTTTTATGGATATGTGATATCATTCCTTATTTTTTGGTAAAGGGAACGGTTGTTCTTGTTTTTCAACCAGCAGAAGAAGGAGGTGGTGGGGCCAAGAAAATTTTAGATGCTGGAGCCTTAGAAAATGTCTCTGCTATATTTGGATTGCATGTCGGACCTAACATACCTTTAGGTGAAGTGGCATCTAGGTCAGGTCCTATGCTTGCAGGAGGTGGCCTCTTTAAAGCTGTAATAAGCGGCAAGGGAGGCCATGCAGCCAATCCTCAACATGCTATTGACCCCATTTTGGCGGCTTCGAATGTGATTGTTAGCTTACAACATATCGTTTCTCGCGAGGCTGATCCCCTTGACACCCAGGTAAAAACTTGCAACTCATCATTGTTTGCAACATTAAAAAGCTTTGTATTCATTTGGAACTTCTACGTTGATCTGTTCTAACTTATCAATGATAGAAGATAACCACGAATCATACAATACTCATGTTGGAGACACACCATCTTGCGAAATATTTTGGCTGTTTGAGGAAAAAAATGTTGGAAATCATAGTGTAACATTATTTATTTACAATGATTTTTGAAATCTGAGGTCTGAATGTCTTCCTAAAATAATATCCTCAAAGGTTGTGACTGTAGGAAAGATTCAAGGAGGTGGTGCATTCAATGTTATTCCAGACTCCGTCACAATTGGTGGCACCTTCCGAGCATTTTTGAGAGAAAGCTTCACGCAACTAAGACGCCGTATTGAGCAGGTTTTTTACGAAGAAGAACGAATTCACAGTGATCTCTATATTTTCCACGTCATGAATAACGTGTCTTATTCTTATTTGTTGATTTTCGAATTGTTAGGATACAAATTATATTTATCCTGTTTTAGTTATCATTGAGATCCTGTTACACGCTAAGTCTCTTTAATTTCGGTCTTGTAGGTTATCATTGGACAAGCTGCTGTGCATAGATGCAACGCAACAGTGAGCTTCCTTGATGACAAGATACCGTCCTGCCCTCCAACTATAAACAATGATGGCTTGCACGACTATTTTCAAAGTGTTGCTGGGAGTTTGCTCGGCGTTGATAAAGTTAAAGGCCATCATCTATTGATGGGATCAGAAGACTTTGCATTCTATCAAGAGGCTATGCCTGGATACGTCTTCATCGTCGGAATGGAAGATGTCACTGTTGAACGTCTTAGGTCATGGCACTCACCCTATTTCAAAGTCAACGAAGATGTACTTCCTTATGGCGCTGCACTTCACGTCTCATTAGCGACTAGGTATCTTGCCAAGTTAAATCAGGAGGTACCAGCGGTAGATGGAAAATATCATGACGAATTATAG

Protein sequence

>MS.gene76565.t1

MDFFKCVKLFIIIFISFLSATPIFSDSSSNSNAIPNFLELAKEPQVFDWMVDIRRKIHENPELGYEEFETSKLIRTKLDELGVPYKHPVAVTGVIGYIGTGLPPFVALRADMDALLMQELVEWEHKSKVPGKMHACGHDAHVAMLLGAAKILKEHEKQLQGTVVLVFQPAEEGGGGAKKILDAGALENVSAIFGLHVGPNIPLGEVASRSGPMLAGGGLFKAVISGKGGHAANPQHAIDPILAASNVIVSLQHIVSREADPLDTQVVTVGKIQGGGAFNVIPDSVTIGGTFRAFLRESFTQLRRRIEQVIIGQAAVHRCNATVSFLDDKIPSCPPTINNDGLHDYFQSVAGSLLGVDKVKGHHLLMGSEDFAFYQEAMPGYVFIVGMEDVTVERLRSWHSPYFKVNEDVLPYGAALHVSLATRYLAKLNQEVPAVDGKYHDEL