Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069987.t1 | XP_003603860.1 | 98.3 | 178 | 3 | 0 | 1 | 178 | 1 | 178 | 1.00E-97 | 365.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069987.t1 | Q9SM57 | 81.5 | 178 | 32 | 1 | 1 | 178 | 1 | 177 | 7.6e-81 | 301.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069987.t1 | G7J5Z3 | 98.3 | 178 | 3 | 0 | 1 | 178 | 1 | 178 | 7.5e-98 | 365.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050099 | MS.gene069987 | 0.833135 | 6.35E-56 | -1.69E-46 |
| MS.gene050301 | MS.gene069987 | 0.813818 | 2.11E-51 | -1.69E-46 |
| MS.gene05101 | MS.gene069987 | 0.811982 | 5.33E-51 | -1.69E-46 |
| MS.gene052078 | MS.gene069987 | 0.804611 | 1.99E-49 | -1.69E-46 |
| MS.gene052789 | MS.gene069987 | 0.813772 | 2.16E-51 | -1.69E-46 |
| MS.gene055422 | MS.gene069987 | 0.80459 | 2.01E-49 | -1.69E-46 |
| MS.gene055428 | MS.gene069987 | 0.800433 | 1.44E-48 | -1.69E-46 |
| MS.gene05733 | MS.gene069987 | 0.822489 | 2.31E-53 | -1.69E-46 |
| MS.gene058002 | MS.gene069987 | 0.80027 | 1.56E-48 | -1.69E-46 |
| MS.gene05811 | MS.gene069987 | 0.826933 | 2.07E-54 | -1.69E-46 |
| MS.gene058660 | MS.gene069987 | 0.80155 | 8.54E-49 | -1.69E-46 |
| MS.gene059518 | MS.gene069987 | 0.833391 | 5.48E-56 | -1.69E-46 |
| MS.gene05984 | MS.gene069987 | 0.812272 | 4.61E-51 | -1.69E-46 |
| MS.gene060476 | MS.gene069987 | 0.806329 | 8.67E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene069987 | 0.800552 | 1.37E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069987.t1 | MTR_3g115990 | 98.315 | 178 | 3 | 0 | 1 | 178 | 1 | 178 | 3.31e-129 | 360 |
| MS.gene069987.t1 | MTR_3g115990 | 85.784 | 204 | 3 | 1 | 1 | 178 | 1 | 204 | 1.65e-123 | 346 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069987.t1 | AT1G76405 | 51.124 | 178 | 76 | 1 | 1 | 178 | 1 | 167 | 6.65e-67 | 202 |
| MS.gene069987.t1 | AT1G20816 | 54.494 | 178 | 70 | 1 | 1 | 178 | 1 | 167 | 2.17e-66 | 201 |
| MS.gene069987.t1 | AT1G76405 | 48.214 | 56 | 29 | 0 | 1 | 56 | 1 | 56 | 7.41e-16 | 68.6 |
Find 29 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGTTAACTTCAAAATTA+AGG | 0.130885 | 3.2:+91655050 | MS.gene069987:CDS |
| CTTGTTAACTTCAAAATTAA+GGG | 0.310936 | 3.2:+91655051 | MS.gene069987:CDS |
| ACGAGGGCACGCAAAGAATT+AGG | 0.312788 | 3.2:-91654770 | None:intergenic |
| AGGTTCCTTATGTGCAGATT+AGG | 0.316574 | 3.2:+91656606 | MS.gene069987:intron |
| TGCAGATTAGGGAGAATAAT+TGG | 0.319583 | 3.2:+91656618 | MS.gene069987:CDS |
| ATAGTACCTCCTTAAAATCT+TGG | 0.365451 | 3.2:-91655089 | None:intergenic |
| GGTTCCTTATGTGCAGATTA+GGG | 0.369973 | 3.2:+91656607 | MS.gene069987:intron |
| CGACACCAATACCTTCTTCC+AGG | 0.391747 | 3.2:+91654641 | MS.gene069987:CDS |
| ATGGAGACATCTCTGCGATA+TGG | 0.406246 | 3.2:+91654570 | MS.gene069987:CDS |
| GAAGTTAACAAGACCATCTT+CGG | 0.418600 | 3.2:-91655040 | None:intergenic |
| TGGCTATGAAGCTATTGAAC+AGG | 0.420836 | 3.2:+91655274 | MS.gene069987:CDS |
| ATGCAGACTACAAAGGTAGA+TGG | 0.424259 | 3.2:+91656648 | MS.gene069987:CDS |
| TTCTCCCTAATCTGCACATA+AGG | 0.440186 | 3.2:-91656611 | None:intergenic |
| TGAAAACTCAGCTCCTCCTC+TGG | 0.449354 | 3.2:-91655204 | None:intergenic |
| CAAGATGTTAGACTCAGAAT+TGG | 0.460040 | 3.2:+91655254 | MS.gene069987:CDS |
| TATGATAAACTTAACAATGT+TGG | 0.478350 | 3.2:+91654949 | MS.gene069987:CDS |
| CAATTCTGAGTCTAACATCT+TGG | 0.479633 | 3.2:-91655253 | None:intergenic |
| AAAATCTTGGTCAACATCAC+AGG | 0.522085 | 3.2:-91655076 | None:intergenic |
| AAATGTGATTACCTGGAAGA+AGG | 0.550658 | 3.2:-91654652 | None:intergenic |
| TTGTAGTTATCAGCCACGCT+TGG | 0.552067 | 3.2:+91654913 | MS.gene069987:intron |
| TTATCAGCCACGCTTGGTGT+AGG | 0.569861 | 3.2:+91654919 | MS.gene069987:CDS |
| TGTTATCCCAACAAGGTTCG+CGG | 0.581115 | 3.2:+91654722 | MS.gene069987:intron |
| GATTACCTGGAAGAAGGTAT+TGG | 0.592385 | 3.2:-91654646 | None:intergenic |
| GAGACATCTCTGCGATATGG+AGG | 0.610703 | 3.2:+91654573 | MS.gene069987:CDS |
| TTGTAGAGGAAATCCAGAGG+AGG | 0.623791 | 3.2:+91655191 | MS.gene069987:intron |
| CTGGATAGAAATGTAGAACG+AGG | 0.632953 | 3.2:-91654787 | None:intergenic |
| ACATTTAATGCAGACTACAA+AGG | 0.641965 | 3.2:+91656641 | MS.gene069987:CDS |
| TTGCACTCCTACACCAAGCG+TGG | 0.667569 | 3.2:-91654926 | None:intergenic |
| TGGATAGAAATGTAGAACGA+GGG | 0.691934 | 3.2:-91654786 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAAAAA+AGG | - | chr3.2:91655173-91655192 | None:intergenic | 0.0% |
| !!! | TTTTTTTTTTTTTTTTGTAG+AGG | + | chr3.2:91655177-91655196 | MS.gene069987:intron | 10.0% |
| !! | AAAATAGTCAATAAAATGAT+TGG | - | chr3.2:91656458-91656477 | None:intergenic | 15.0% |
| !! | TAATTGATTAATACTTGTTT+GGG | + | chr3.2:91654870-91654889 | MS.gene069987:intron | 15.0% |
| !! | TTAAGTTCTTAAAAATACAA+TGG | - | chr3.2:91655609-91655628 | None:intergenic | 15.0% |
| !! | TTAATTGATTAATACTTGTT+TGG | + | chr3.2:91654869-91654888 | MS.gene069987:intron | 15.0% |
| !!! | TATTTATATTTCTGTAAAGT+AGG | + | chr3.2:91655698-91655717 | MS.gene069987:intron | 15.0% |
| !! | AAAGATAAAATGCATTACTA+AGG | - | chr3.2:91656543-91656562 | None:intergenic | 20.0% |
| !! | ACCATTAAAAATCAATTCTT+AGG | - | chr3.2:91655736-91655755 | None:intergenic | 20.0% |
| !! | ATTAAATTTCACAAAATGAG+TGG | - | chr3.2:91655130-91655149 | None:intergenic | 20.0% |
| !! | ATTGGATTATATAGATATCA+AGG | + | chr3.2:91655563-91655582 | MS.gene069987:intron | 20.0% |
| !! | CTTGTTAACTTCAAAATTAA+GGG | + | chr3.2:91655051-91655070 | MS.gene069987:CDS | 20.0% |
| !! | GAATTATACATAGAAAAGAT+TGG | - | chr3.2:91654680-91654699 | None:intergenic | 20.0% |
| !! | TATGATAAACTTAACAATGT+TGG | + | chr3.2:91654949-91654968 | MS.gene069987:CDS | 20.0% |
| !! | TCTTGTTAACTTCAAAATTA+AGG | + | chr3.2:91655050-91655069 | MS.gene069987:CDS | 20.0% |
| !! | TTCTATCATAAACCATATAT+AGG | + | chr3.2:91656065-91656084 | MS.gene069987:intron | 20.0% |
| !! | TTGGATTATATAGATATCAA+GGG | + | chr3.2:91655564-91655583 | MS.gene069987:intron | 20.0% |
| !!! | AAAAAAAGGTTTCTCAATTT+TGG | - | chr3.2:91655328-91655347 | None:intergenic | 20.0% |
| !!! | AAAAAAGGTTTCTCAATTTT+GGG | - | chr3.2:91655327-91655346 | None:intergenic | 20.0% |
| !!! | ACCTAAGAATTGATTTTTAA+TGG | + | chr3.2:91655732-91655751 | MS.gene069987:intron | 20.0% |
| !!! | ATAAGTATTGTATTTAATGG+AGG | + | chr3.2:91656210-91656229 | MS.gene069987:intron | 20.0% |
| !!! | GATTTTTAATGGTTAAGAAT+CGG | + | chr3.2:91655743-91655762 | MS.gene069987:intron | 20.0% |
| !!! | GGTTTTTAAAAGTTTAGAAT+TGG | - | chr3.2:91655831-91655850 | None:intergenic | 20.0% |
| ! | AACTGCTGTTAAAAAGAATT+TGG | + | chr3.2:91656354-91656373 | MS.gene069987:intron | 25.0% |
| ! | ATTGAAGGGATCAAATATAT+AGG | + | chr3.2:91655973-91655992 | MS.gene069987:intron | 25.0% |
| ! | GCTTTAGTCAAAGATTATAT+CGG | + | chr3.2:91655396-91655415 | MS.gene069987:intron | 25.0% |
| ! | TAAAAATACAATGGCATTGT+AGG | - | chr3.2:91655600-91655619 | None:intergenic | 25.0% |
| ! | TATATAGGAAAAAAAACCAC+TGG | + | chr3.2:91656080-91656099 | MS.gene069987:intron | 25.0% |
| ! | TATTACTAGATACATACATC+TGG | - | chr3.2:91654809-91654828 | None:intergenic | 25.0% |
| ! | TTTAACAGCAGTTAAATGTA+AGG | - | chr3.2:91656347-91656366 | None:intergenic | 25.0% |
| !! | AAAAAGGTTTCTCAATTTTG+GGG | - | chr3.2:91655326-91655345 | None:intergenic | 25.0% |
| !! | ATATTATTCTCATTTTCCAG+TGG | - | chr3.2:91656099-91656118 | None:intergenic | 25.0% |
| !! | CGCATAAGTATTGTATTTAA+TGG | + | chr3.2:91656207-91656226 | MS.gene069987:intron | 25.0% |
| !! | GAACATATTCAATTTTCAGA+AGG | + | chr3.2:91655229-91655248 | MS.gene069987:CDS | 25.0% |
| !! | GAACTAATTGCTATTATTCT+GGG | + | chr3.2:91655454-91655473 | MS.gene069987:intron | 25.0% |
| !! | TGAACTAATTGCTATTATTC+TGG | + | chr3.2:91655453-91655472 | MS.gene069987:intron | 25.0% |
| !!! | AAAACTTTAAGACCTTCAAA+TGG | + | chr3.2:91655658-91655677 | MS.gene069987:intron | 25.0% |
| !!! | AAACTTTTAAAAACCGTCAT+TGG | + | chr3.2:91655836-91655855 | MS.gene069987:intron | 25.0% |
| !!! | AGTATTTTGAGATTGAAAAC+TGG | + | chr3.2:91656235-91656254 | MS.gene069987:intron | 25.0% |
| !!! | GTGGTTTTTTTTCCTATATA+TGG | - | chr3.2:91656080-91656099 | None:intergenic | 25.0% |
| !!! | GTTTTAAGACAATGAAATCT+TGG | - | chr3.2:91656574-91656593 | None:intergenic | 25.0% |
| !!! | TACAAAGTTTTGTTAACTAG+CGG | + | chr3.2:91655496-91655515 | MS.gene069987:intron | 25.0% |
| AAGAATAACTCGGCAAAATT+AGG | - | chr3.2:91656506-91656525 | None:intergenic | 30.0% | |
| ACACCATGAAAAGAATAACT+CGG | - | chr3.2:91656516-91656535 | None:intergenic | 30.0% | |
| ACATTTAATGCAGACTACAA+AGG | + | chr3.2:91656641-91656660 | MS.gene069987:CDS | 30.0% | |
| AGAATAACTCGGCAAAATTA+GGG | - | chr3.2:91656505-91656524 | None:intergenic | 30.0% | |
| ATAGTACCTCCTTAAAATCT+TGG | - | chr3.2:91655092-91655111 | None:intergenic | 30.0% | |
| ATAGTACGCAGATAAATTGA+AGG | + | chr3.2:91655958-91655977 | MS.gene069987:intron | 30.0% | |
| ATCAATTCTTAGGTAACATG+TGG | - | chr3.2:91655726-91655745 | None:intergenic | 30.0% | |
| ATTGGAAAAATGTGATTACC+TGG | - | chr3.2:91654662-91654681 | None:intergenic | 30.0% | |
| ATTTCACAAAATGAGTGGAT+TGG | - | chr3.2:91655125-91655144 | None:intergenic | 30.0% | |
| CAGATTACTAAATGTTGCAA+GGG | + | chr3.2:91656154-91656173 | MS.gene069987:intron | 30.0% | |
| TAGTACGCAGATAAATTGAA+GGG | + | chr3.2:91655959-91655978 | MS.gene069987:intron | 30.0% | |
| TGATTAATACTTGTTTGGGT+TGG | + | chr3.2:91654874-91654893 | MS.gene069987:intron | 30.0% | |
| TTATCTGCGTACTATTAACA+AGG | - | chr3.2:91655953-91655972 | None:intergenic | 30.0% | |
| ! | AATCGGTTCTTATACAAGAA+TGG | + | chr3.2:91655760-91655779 | MS.gene069987:intron | 30.0% |
| ! | GATTAATACTTGTTTGGGTT+GGG | + | chr3.2:91654875-91654894 | MS.gene069987:intron | 30.0% |
| ! | TATTATTCTGGGAATTCGAT+AGG | + | chr3.2:91655465-91655484 | MS.gene069987:intron | 30.0% |
| ! | TGATGTTGACCAAGATTTTA+AGG | + | chr3.2:91655080-91655099 | MS.gene069987:CDS | 30.0% |
| !! | GTGATTTGTTTCAGATTCAT+CGG | + | chr3.2:91656288-91656307 | MS.gene069987:intron | 30.0% |
| !!! | ACAAAGTTTTGTTAACTAGC+GGG | + | chr3.2:91655497-91655516 | MS.gene069987:intron | 30.0% |
| !!! | GTTGTCGATTTTTCATTTGT+TGG | + | chr3.2:91656387-91656406 | MS.gene069987:intron | 30.0% |
| AAAATCTTGGTCAACATCAC+AGG | - | chr3.2:91655079-91655098 | None:intergenic | 35.0% | |
| AAATGTGATTACCTGGAAGA+AGG | - | chr3.2:91654655-91654674 | None:intergenic | 35.0% | |
| AACTTGTCAGATCCATTTGA+AGG | - | chr3.2:91655673-91655692 | None:intergenic | 35.0% | |
| AATTAGTTCAAATCCCCCTA+TGG | - | chr3.2:91655443-91655462 | None:intergenic | 35.0% | |
| AGGTACTTTCATTATCCTCT+TGG | + | chr3.2:91655793-91655812 | MS.gene069987:intron | 35.0% | |
| ATACAATGGCATTGTAGGAT+AGG | - | chr3.2:91655595-91655614 | None:intergenic | 35.0% | |
| CAAGATGTTAGACTCAGAAT+TGG | + | chr3.2:91655254-91655273 | MS.gene069987:CDS | 35.0% | |
| CAATTCTGAGTCTAACATCT+TGG | - | chr3.2:91655256-91655275 | None:intergenic | 35.0% | |
| CTGTCAATAGTAGTGAATCA+CGG | - | chr3.2:91655542-91655561 | None:intergenic | 35.0% | |
| CTTAAAACTACTCTTGTTCC+AGG | + | chr3.2:91656586-91656605 | MS.gene069987:intron | 35.0% | |
| GAAGTTAACAAGACCATCTT+CGG | - | chr3.2:91655043-91655062 | None:intergenic | 35.0% | |
| GCAGATTACTAAATGTTGCA+AGG | + | chr3.2:91656153-91656172 | MS.gene069987:intron | 35.0% | |
| GGTTCCTTGTGAAAATTTGA+TGG | + | chr3.2:91655889-91655908 | MS.gene069987:intron | 35.0% | |
| TGAAAACTGGAAATTGTTCG+TGG | + | chr3.2:91656248-91656267 | MS.gene069987:intron | 35.0% | |
| TGCAGATTAGGGAGAATAAT+TGG | + | chr3.2:91656618-91656637 | MS.gene069987:CDS | 35.0% | |
| TGGATAGAAATGTAGAACGA+GGG | - | chr3.2:91654789-91654808 | None:intergenic | 35.0% | |
| TTCACTACTATTGACAGGAT+TGG | + | chr3.2:91655545-91655564 | MS.gene069987:intron | 35.0% | |
| ! | ATATCGGTGTTCAGAAATAG+CGG | + | chr3.2:91655412-91655431 | MS.gene069987:intron | 35.0% |
| ! | CTGCTTCGCATGAATTTTTA+AGG | - | chr3.2:91654610-91654629 | None:intergenic | 35.0% |
| ! | GACACCATCAAATTTTCACA+AGG | - | chr3.2:91655896-91655915 | None:intergenic | 35.0% |
| ! | TTGCCGAGTTATTCTTTTCA+TGG | + | chr3.2:91656510-91656529 | MS.gene069987:intron | 35.0% |
| ! | TTTTTGTAGAGGAAATCCAG+AGG | + | chr3.2:91655188-91655207 | MS.gene069987:intron | 35.0% |
| !! | TGTGAAAATTTGATGGTGTC+AGG | + | chr3.2:91655896-91655915 | MS.gene069987:intron | 35.0% |
| !! | TGTTGACCAAGATTTTAAGG+AGG | + | chr3.2:91655083-91655102 | MS.gene069987:CDS | 35.0% |
| !!! | AATTTTGGGGCATTCATTCA+TGG | - | chr3.2:91655313-91655332 | None:intergenic | 35.0% |
| !!! | ATTTTGGGGCATTCATTCAT+GGG | - | chr3.2:91655312-91655331 | None:intergenic | 35.0% |
| !!! | CAAAGTTTTGTTAACTAGCG+GGG | + | chr3.2:91655498-91655517 | MS.gene069987:intron | 35.0% |
| !!! | CGCATGAATTTTTAAGGCTT+TGG | - | chr3.2:91654604-91654623 | None:intergenic | 35.0% |
| ACAAGAATGGTTCTTACACG+AGG | + | chr3.2:91655773-91655792 | MS.gene069987:intron | 40.0% | |
| AGGTTCCTTATGTGCAGATT+AGG | + | chr3.2:91656606-91656625 | MS.gene069987:intron | 40.0% | |
| ATGCAGACTACAAAGGTAGA+TGG | + | chr3.2:91656648-91656667 | MS.gene069987:CDS | 40.0% | |
| CAGCAGTTAAATGTAAGGCT+TGG | - | chr3.2:91656342-91656361 | None:intergenic | 40.0% | |
| CGTGATTCACTACTATTGAC+AGG | + | chr3.2:91655540-91655559 | MS.gene069987:intron | 40.0% | |
| CTGCGTACTATTAACAAGGA+CGG | - | chr3.2:91655949-91655968 | None:intergenic | 40.0% | |
| CTGGATAGAAATGTAGAACG+AGG | - | chr3.2:91654790-91654809 | None:intergenic | 40.0% | |
| GCAACATTTAGTAATCTGCC+AGG | - | chr3.2:91656152-91656171 | None:intergenic | 40.0% | |
| GGTTCCTTATGTGCAGATTA+GGG | + | chr3.2:91656607-91656626 | MS.gene069987:intron | 40.0% | |
| TAATCTGCACATAAGGAACC+TGG | - | chr3.2:91656607-91656626 | None:intergenic | 40.0% | |
| TGATGTTCTGTTGATGCTCA+TGG | + | chr3.2:91656183-91656202 | MS.gene069987:intron | 40.0% | |
| TGCGTACTATTAACAAGGAC+GGG | - | chr3.2:91655948-91655967 | None:intergenic | 40.0% | |
| TGGCTATGAAGCTATTGAAC+AGG | + | chr3.2:91655274-91655293 | MS.gene069987:CDS | 40.0% | |
| TGGTTCTTACAAGTACCAAG+AGG | - | chr3.2:91655811-91655830 | None:intergenic | 40.0% | |
| TTCTCCCTAATCTGCACATA+AGG | - | chr3.2:91656614-91656633 | None:intergenic | 40.0% | |
| ! | AAGCCTTATCCTACTAAGTG+GGG | + | chr3.2:91656013-91656032 | MS.gene069987:intron | 40.0% |
| ! | CAAGCCTTATCCTACTAAGT+GGG | + | chr3.2:91656012-91656031 | MS.gene069987:intron | 40.0% |
| ! | GATTACCTGGAAGAAGGTAT+TGG | - | chr3.2:91654649-91654668 | None:intergenic | 40.0% |
| ! | GGTGACACGAAAAGTTTTCT+TGG | - | chr3.2:91655022-91655041 | None:intergenic | 40.0% |
| !! | AGTTTGTTTTTCGCTCAAGC+GGG | + | chr3.2:91655868-91655887 | MS.gene069987:intron | 40.0% |
| !! | CAGTTTGTTTTTCGCTCAAG+CGG | + | chr3.2:91655867-91655886 | MS.gene069987:intron | 40.0% |
| !!! | TTTTGGGGCATTCATTCATG+GGG | - | chr3.2:91655311-91655330 | None:intergenic | 40.0% |
| ATGGAGACATCTCTGCGATA+TGG | + | chr3.2:91654570-91654589 | MS.gene069987:CDS | 45.0% | |
| CAAGTCGTGTTATCCCAACA+AGG | + | chr3.2:91654715-91654734 | MS.gene069987:intron | 45.0% | |
| CCACTTAGTAGGATAAGGCT+TGG | - | chr3.2:91656014-91656033 | None:intergenic | 45.0% | |
| CTTATCCTACTAAGTGGGGT+CGG | + | chr3.2:91656017-91656036 | MS.gene069987:intron | 45.0% | |
| GGAGAGCTTGACACGAAAAA+TGG | + | chr3.2:91654743-91654762 | MS.gene069987:CDS | 45.0% | |
| GTCAGGACTCACAATAGCTT+AGG | + | chr3.2:91655913-91655932 | MS.gene069987:intron | 45.0% | |
| TAGTAATCTGCCAGGCTTTG+TGG | - | chr3.2:91656144-91656163 | None:intergenic | 45.0% | |
| TAGTTCAAATCCCCCTATGG+TGG | - | chr3.2:91655440-91655459 | None:intergenic | 45.0% | |
| TCAGATTCATCGGTGCAGTT+AGG | + | chr3.2:91656298-91656317 | MS.gene069987:intron | 45.0% | |
| TGTTATCCCAACAAGGTTCG+CGG | + | chr3.2:91654722-91654741 | MS.gene069987:intron | 45.0% | |
| TTGTAGAGGAAATCCAGAGG+AGG | + | chr3.2:91655191-91655210 | MS.gene069987:intron | 45.0% | |
| TTGTAGTTATCAGCCACGCT+TGG | + | chr3.2:91654913-91654932 | MS.gene069987:intron | 45.0% | |
| ! | ACTTTTCGTGTCACCGAAGA+TGG | + | chr3.2:91655027-91655046 | MS.gene069987:CDS | 45.0% |
| ! | AGTAATCTGCCAGGCTTTGT+GGG | - | chr3.2:91656143-91656162 | None:intergenic | 45.0% |
| ! | CCAAGCCTTATCCTACTAAG+TGG | + | chr3.2:91656011-91656030 | MS.gene069987:intron | 45.0% |
| ! | TTTGGGGCATTCATTCATGG+GGG | - | chr3.2:91655310-91655329 | None:intergenic | 45.0% |
| !! | AAAAAAAAAAAAAAAAATTC+AGG | - | chr3.2:91655170-91655189 | None:intergenic | 5.0% |
| AACTGACGCGTCTCCAATGA+CGG | - | chr3.2:91655852-91655871 | None:intergenic | 50.0% | |
| ACAGCGAGAGGTAGCTTAAG+TGG | - | chr3.2:91655373-91655392 | None:intergenic | 50.0% | |
| CGACACCAATACCTTCTTCC+AGG | + | chr3.2:91654641-91654660 | MS.gene069987:CDS | 50.0% | |
| CGACCCCACTTAGTAGGATA+AGG | - | chr3.2:91656019-91656038 | None:intergenic | 50.0% | |
| GACTAAAGCTGTACAGCGAG+AGG | - | chr3.2:91655385-91655404 | None:intergenic | 50.0% | |
| GAGACATCTCTGCGATATGG+AGG | + | chr3.2:91654573-91654592 | MS.gene069987:CDS | 50.0% | |
| GTTAACTAGCGGGGCTATAG+TGG | + | chr3.2:91655507-91655526 | MS.gene069987:intron | 50.0% | |
| TGAAAACTCAGCTCCTCCTC+TGG | - | chr3.2:91655207-91655226 | None:intergenic | 50.0% | |
| ! | ACGAGGGCACGCAAAGAATT+AGG | - | chr3.2:91654773-91654792 | None:intergenic | 50.0% |
| ! | AGGCTTTGTGGGACAACAAG+AGG | - | chr3.2:91656132-91656151 | None:intergenic | 50.0% |
| ! | GAGGAGGAGCTGAGTTTTCA+TGG | + | chr3.2:91655207-91655226 | MS.gene069987:CDS | 50.0% |
| ! | TCTTGTTGTCCCACAAAGCC+TGG | + | chr3.2:91656131-91656150 | MS.gene069987:intron | 50.0% |
| !! | AAATAGCGGTGCCACCATAG+GGG | + | chr3.2:91655426-91655445 | MS.gene069987:intron | 50.0% |
| !! | AGAAATAGCGGTGCCACCAT+AGG | + | chr3.2:91655424-91655443 | MS.gene069987:intron | 50.0% |
| !! | GAAATAGCGGTGCCACCATA+GGG | + | chr3.2:91655425-91655444 | MS.gene069987:intron | 50.0% |
| !! | TTATCAGCCACGCTTGGTGT+AGG | + | chr3.2:91654919-91654938 | MS.gene069987:CDS | 50.0% |
| AAGCTCTCCGCGAACCTTGT+TGG | - | chr3.2:91654732-91654751 | None:intergenic | 55.0% | |
| AGCTCTCCGCGAACCTTGTT+GGG | - | chr3.2:91654731-91654750 | None:intergenic | 55.0% | |
| TTGCACTCCTACACCAAGCG+TGG | - | chr3.2:91654929-91654948 | None:intergenic | 55.0% | |
| !! | AATAGCGGTGCCACCATAGG+GGG | + | chr3.2:91655427-91655446 | MS.gene069987:intron | 55.0% |
| ACTAAGTGGGGTCGGCTGCA+TGG | + | chr3.2:91656025-91656044 | MS.gene069987:intron | 60.0% | |
| TGCAGCCGACCCCACTTAGT+AGG | - | chr3.2:91656025-91656044 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 91654570 | 91656691 | 91654570 | ID=MS.gene069987 |
| chr3.2 | mRNA | 91654570 | 91656691 | 91654570 | ID=MS.gene069987.t1;Parent=MS.gene069987 |
| chr3.2 | exon | 91654570 | 91654662 | 91654570 | ID=MS.gene069987.t1.exon1;Parent=MS.gene069987.t1 |
| chr3.2 | CDS | 91654570 | 91654662 | 91654570 | ID=cds.MS.gene069987.t1;Parent=MS.gene069987.t1 |
| chr3.2 | exon | 91654737 | 91654811 | 91654737 | ID=MS.gene069987.t1.exon2;Parent=MS.gene069987.t1 |
| chr3.2 | CDS | 91654737 | 91654811 | 91654737 | ID=cds.MS.gene069987.t1;Parent=MS.gene069987.t1 |
| chr3.2 | exon | 91654919 | 91655104 | 91654919 | ID=MS.gene069987.t1.exon3;Parent=MS.gene069987.t1 |
| chr3.2 | CDS | 91654919 | 91655104 | 91654919 | ID=cds.MS.gene069987.t1;Parent=MS.gene069987.t1 |
| chr3.2 | exon | 91655197 | 91655295 | 91655197 | ID=MS.gene069987.t1.exon4;Parent=MS.gene069987.t1 |
| chr3.2 | CDS | 91655197 | 91655295 | 91655197 | ID=cds.MS.gene069987.t1;Parent=MS.gene069987.t1 |
| chr3.2 | exon | 91656608 | 91656691 | 91656608 | ID=MS.gene069987.t1.exon5;Parent=MS.gene069987.t1 |
| chr3.2 | CDS | 91656608 | 91656691 | 91656608 | ID=cds.MS.gene069987.t1;Parent=MS.gene069987.t1 |
| Gene Sequence |
| Protein sequence |
