Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070569.t1 | XP_003613762.1 | 100 | 120 | 0 | 0 | 1 | 120 | 1 | 120 | 7.90E-57 | 229.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070569.t1 | P40590 | 96.6 | 119 | 4 | 0 | 1 | 119 | 1 | 119 | 1.5e-56 | 219.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070569.t1 | G7KF74 | 100.0 | 120 | 0 | 0 | 1 | 120 | 1 | 120 | 5.7e-57 | 229.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049411 | MS.gene070569 | 0.831701 | 1.44E-55 | -1.69E-46 |
| MS.gene050838 | MS.gene070569 | 0.813779 | 2.15E-51 | -1.69E-46 |
| MS.gene051903 | MS.gene070569 | 0.831063 | 2.06E-55 | -1.69E-46 |
| MS.gene052947 | MS.gene070569 | 0.829962 | 3.84E-55 | -1.69E-46 |
| MS.gene053952 | MS.gene070569 | 0.837777 | 4.25E-57 | -1.69E-46 |
| MS.gene054937 | MS.gene070569 | 0.812536 | 4.04E-51 | -1.69E-46 |
| MS.gene055424 | MS.gene070569 | 0.800887 | 1.17E-48 | -1.69E-46 |
| MS.gene056075 | MS.gene070569 | 0.846574 | 1.99E-59 | -1.69E-46 |
| MS.gene057094 | MS.gene070569 | 0.819949 | 8.88E-53 | -1.69E-46 |
| MS.gene058074 | MS.gene070569 | 0.811228 | 7.78E-51 | -1.69E-46 |
| MS.gene060574 | MS.gene070569 | 0.822854 | 1.90E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070569.t1 | MTR_5g040570 | 100.000 | 120 | 0 | 0 | 1 | 120 | 1 | 120 | 7.86e-83 | 238 |
| MS.gene070569.t1 | MTR_7g010150 | 96.667 | 120 | 4 | 0 | 1 | 120 | 1 | 120 | 2.85e-80 | 231 |
| MS.gene070569.t1 | MTR_8g467460 | 96.667 | 120 | 4 | 0 | 1 | 120 | 1 | 120 | 2.43e-79 | 229 |
| MS.gene070569.t1 | MTR_7g011050 | 63.025 | 119 | 27 | 2 | 1 | 119 | 1 | 102 | 3.83e-44 | 139 |
| MS.gene070569.t1 | MTR_8g019410 | 46.610 | 118 | 25 | 2 | 4 | 120 | 47 | 127 | 4.19e-19 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070569.t1 | AT1G26880 | 93.333 | 120 | 8 | 0 | 1 | 120 | 1 | 120 | 2.05e-77 | 224 |
| MS.gene070569.t1 | AT1G69620 | 93.277 | 119 | 8 | 0 | 1 | 119 | 1 | 119 | 1.60e-76 | 222 |
| MS.gene070569.t1 | AT3G28900 | 88.333 | 120 | 14 | 0 | 1 | 120 | 1 | 120 | 2.87e-73 | 214 |
| MS.gene070569.t1 | AT1G26880 | 91.304 | 92 | 8 | 0 | 1 | 92 | 1 | 92 | 7.77e-58 | 174 |
Find 36 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATTCTCTTGCCAGTAAC+AGG | 0.250617 | 5.3:+28412591 | None:intergenic |
| TAGGATCATTAGGGCTTTCT+TGG | 0.253359 | 5.3:-28410775 | MS.gene070569:CDS |
| TCTGGTTCTATAGGATCATT+AGG | 0.302724 | 5.3:-28410785 | MS.gene070569:intron |
| GGACCTAAGTGCCCTGTTAC+TGG | 0.328623 | 5.3:-28412603 | MS.gene070569:CDS |
| AACCCTGTGTTGGTTGGATT+TGG | 0.331681 | 5.3:+28412772 | None:intergenic |
| TTCACAGTCCTGCGGTTTCT+AGG | 0.351101 | 5.3:+28410938 | None:intergenic |
| AGAGCAAAAGATTGTGAAAA+AGG | 0.358157 | 5.3:-28410748 | MS.gene070569:CDS |
| AGGACTGTGAACCGTGCTTA+TGG | 0.432739 | 5.3:-28410926 | MS.gene070569:CDS |
| ATAAGCATACAAACCTTTCC+CGG | 0.437755 | 5.3:+28410879 | None:intergenic |
| GTTACTGGCAAGAGAATTCA+AGG | 0.469764 | 5.3:-28412588 | MS.gene070569:CDS |
| CTGGAGGTGCTGTCCGGGAA+AGG | 0.484140 | 5.3:-28410892 | MS.gene070569:intron |
| AATTCAGAAGGCAAAGGAAA+AGG | 0.486375 | 5.3:-28410718 | MS.gene070569:CDS |
| TTTGTCTGGAGGTGCTGTCC+GGG | 0.497525 | 5.3:-28410897 | MS.gene070569:CDS |
| CTGGTTCTATAGGATCATTA+GGG | 0.498453 | 5.3:-28410784 | MS.gene070569:intron |
| CTACAGAGTACAAGAGATCA+AGG | 0.501509 | 5.3:-28410964 | MS.gene070569:CDS |
| TGTGGTCCAAAATTATGCCT+TGG | 0.509286 | 5.3:+28410689 | None:intergenic |
| AAAGGAAAAGGTTGCCTCCA+AGG | 0.514108 | 5.3:-28410706 | MS.gene070569:CDS |
| TTTGACAACCCTGTGTTGGT+TGG | 0.514440 | 5.3:+28412766 | None:intergenic |
| TTGCCAGTAACAGGGCACTT+AGG | 0.518732 | 5.3:+28412600 | None:intergenic |
| GGTCCAAAATTATGCCTTGG+AGG | 0.532389 | 5.3:+28410692 | None:intergenic |
| CACAGGGTTGTCAAAACCCC+TGG | 0.556629 | 5.3:-28412758 | MS.gene070569:intron |
| CTTGATCTCTTGTACTCTGT+AGG | 0.561073 | 5.3:+28410965 | None:intergenic |
| CAACCAAATCCAACCAACAC+AGG | 0.569419 | 5.3:-28412775 | MS.gene070569:CDS |
| ACTACTAAGAAGAGAGCTAG+TGG | 0.569876 | 5.3:-28412624 | MS.gene070569:CDS |
| AAAGGTCCTCAAAATTCAGA+AGG | 0.596465 | 5.3:-28410730 | MS.gene070569:CDS |
| AATTGCAGATTCCACACTTG+AGG | 0.607246 | 5.3:-28410988 | MS.gene070569:intron |
| GAATTCTCTTGCCAGTAACA+GGG | 0.607451 | 5.3:+28412592 | None:intergenic |
| CAAGGCTGCCTAGAAACCGC+AGG | 0.608893 | 5.3:-28410946 | MS.gene070569:CDS |
| GTAGCTGTGACGACGGCGAT+AGG | 0.621925 | 5.3:+28412799 | None:intergenic |
| TACTCTGTAGGCCTCAAGTG+TGG | 0.623172 | 5.3:+28410977 | None:intergenic |
| CCTCAAAATTCAGAAGGCAA+AGG | 0.629318 | 5.3:-28410724 | MS.gene070569:CDS |
| AACCAAATCCAACCAACACA+GGG | 0.630763 | 5.3:-28412774 | MS.gene070569:CDS |
| TGGTTGCGTAGCTGTGACGA+CGG | 0.639865 | 5.3:+28412792 | None:intergenic |
| ACTGTGAACCGTGCTTATGG+TGG | 0.651912 | 5.3:-28410923 | MS.gene070569:CDS |
| ACAAAACTCCACCATAAGCA+CGG | 0.670068 | 5.3:+28410915 | None:intergenic |
| AAGCACGGTTCACAGTCCTG+CGG | 0.716531 | 5.3:+28410930 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTATACACAAATATC+TGG | - | chr5.3:28411766-28411785 | MS.gene070569:intron | 15.0% |
| !!! | AGATATTTGTGTATAATTTT+AGG | + | chr5.3:28411767-28411786 | None:intergenic | 15.0% |
| !!! | GATATTTGTGTATAATTTTA+GGG | + | chr5.3:28411766-28411785 | None:intergenic | 15.0% |
| !!! | GATTTGTTATATTTTGAAAT+TGG | - | chr5.3:28410822-28410841 | MS.gene070569:intron | 15.0% |
| !!! | GTTTATTTTTTTTCATTGAT+TGG | - | chr5.3:28410964-28410983 | MS.gene070569:CDS | 15.0% |
| !!! | TATTATATGTTTCTTACTTT+TGG | - | chr5.3:28412462-28412481 | MS.gene070569:intron | 15.0% |
| !! | AAATTGAAATTTACTTACCA+GGG | + | chr5.3:28410778-28410797 | None:intergenic | 20.0% |
| !! | AATCAAGTAAAATTGTTAAC+TGG | + | chr5.3:28412019-28412038 | None:intergenic | 20.0% |
| !! | AATCTAATTATATTTGTCTC+TGG | - | chr5.3:28412713-28412732 | MS.gene070569:intron | 20.0% |
| !! | CAAAACACGTTAAAATATTT+CGG | - | chr5.3:28411687-28411706 | MS.gene070569:intron | 20.0% |
| !! | CAACATAAAACTATAAACAA+TGG | + | chr5.3:28411102-28411121 | None:intergenic | 20.0% |
| !! | TAATGTAACATCATAAATCA+AGG | + | chr5.3:28411034-28411053 | None:intergenic | 20.0% |
| !! | TAGAATTTCAAAAACTAAAC+TGG | + | chr5.3:28412126-28412145 | None:intergenic | 20.0% |
| !! | TGGTCATATATTAAAAAACA+TGG | + | chr5.3:28411999-28412018 | None:intergenic | 20.0% |
| !!! | AATATAACAAATCTGAGATT+CGG | + | chr5.3:28410815-28410834 | None:intergenic | 20.0% |
| !!! | AATATTGATTAAAAATGCCA+AGG | + | chr5.3:28411975-28411994 | None:intergenic | 20.0% |
| !!! | AGTTTGAAATAAACATCATA+CGG | + | chr5.3:28411529-28411548 | None:intergenic | 20.0% |
| !!! | TAGTTTTATGTTGTGATTTA+TGG | - | chr5.3:28411109-28411128 | MS.gene070569:intron | 20.0% |
| ! | AATTGAAATTTACTTACCAG+GGG | + | chr5.3:28410777-28410796 | None:intergenic | 25.0% |
| ! | AGCTCTTACATTTAATGATT+TGG | - | chr5.3:28412675-28412694 | MS.gene070569:intron | 25.0% |
| ! | GAAATTGAAATTTACTTACC+AGG | + | chr5.3:28410779-28410798 | None:intergenic | 25.0% |
| ! | TGTTCATATAATAAGAAGCA+TGG | + | chr5.3:28412229-28412248 | None:intergenic | 25.0% |
| !! | AGACATTTGAGTTTATCATA+CGG | - | chr5.3:28411856-28411875 | MS.gene070569:intron | 25.0% |
| !! | CGGATTTTACAAACTAAATA+GGG | - | chr5.3:28411707-28411726 | MS.gene070569:intron | 25.0% |
| !! | CTTAATTTTGTTCCAAGTTA+AGG | + | chr5.3:28412175-28412194 | None:intergenic | 25.0% |
| !! | TCGGATTTTACAAACTAAAT+AGG | - | chr5.3:28411706-28411725 | MS.gene070569:intron | 25.0% |
| !! | TTGCTTTGTTATAGAATGTT+TGG | - | chr5.3:28412285-28412304 | MS.gene070569:intron | 25.0% |
| !!! | AATATTTTAACGTGTTTTGG+AGG | + | chr5.3:28411686-28411705 | None:intergenic | 25.0% |
| !!! | ACCACATTTACAAGTTTTAA+AGG | + | chr5.3:28411236-28411255 | None:intergenic | 25.0% |
| !!! | ACCTTTAAAACTTGTAAATG+TGG | - | chr5.3:28411232-28411251 | MS.gene070569:intron | 25.0% |
| !!! | ATTTTGTGTTGTTGAAATGT+AGG | - | chr5.3:28410850-28410869 | MS.gene070569:intron | 25.0% |
| !!! | CGAAATATTTTAACGTGTTT+TGG | + | chr5.3:28411689-28411708 | None:intergenic | 25.0% |
| !!! | TAATGATTTGGTTTAATTGC+TGG | - | chr5.3:28412687-28412706 | MS.gene070569:intron | 25.0% |
| AGAGCAAAAGATTGTGAAAA+AGG | - | chr5.3:28412768-28412787 | MS.gene070569:CDS | 30.0% | |
| AGGTTTGTATGCTTATCTTA+CGG | - | chr5.3:28412644-28412663 | MS.gene070569:CDS | 30.0% | |
| ATGTTGTGATTTATGGTAAC+TGG | - | chr5.3:28411116-28411135 | MS.gene070569:intron | 30.0% | |
| TGATTAAAAATGCCAAGGTT+GGG | + | chr5.3:28411970-28411989 | None:intergenic | 30.0% | |
| TTCGGATTATAAAATCCGAA+CGG | - | chr5.3:28411641-28411660 | MS.gene070569:intron | 30.0% | |
| TTGATTAAAAATGCCAAGGT+TGG | + | chr5.3:28411971-28411990 | None:intergenic | 30.0% | |
| TTGCAAGCTCAAATAATCAT+AGG | + | chr5.3:28412492-28412511 | None:intergenic | 30.0% | |
| TTTATAATCCGAACTGCATA+GGG | + | chr5.3:28411634-28411653 | None:intergenic | 30.0% | |
| ! | ATAGTAAAAAAGCATGTCAG+AGG | + | chr5.3:28412436-28412455 | None:intergenic | 30.0% |
| ! | GTAGTTTTTGTAAGCTATCT+TGG | + | chr5.3:28411364-28411383 | None:intergenic | 30.0% |
| ! | TTTTATAATCCGAACTGCAT+AGG | + | chr5.3:28411635-28411654 | None:intergenic | 30.0% |
| !! | ATATTTGTCTCTGGTTCTAT+AGG | - | chr5.3:28412722-28412741 | MS.gene070569:intron | 30.0% |
| !!! | GTGTTTTGGAGGATTTTATA+GGG | + | chr5.3:28411675-28411694 | None:intergenic | 30.0% |
| AAACAGAGCCTGTAAATGTT+TGG | - | chr5.3:28411487-28411506 | MS.gene070569:intron | 35.0% | |
| AAACATCATACGGACAAACT+AGG | + | chr5.3:28411519-28411538 | None:intergenic | 35.0% | |
| AAACATTTACAGGCTCTGTT+TGG | + | chr5.3:28411488-28411507 | None:intergenic | 35.0% | |
| AAAGGTCCTCAAAATTCAGA+AGG | - | chr5.3:28412786-28412805 | MS.gene070569:CDS | 35.0% | |
| AATTCAGAAGGCAAAGGAAA+AGG | - | chr5.3:28412798-28412817 | MS.gene070569:CDS | 35.0% | |
| ATAAGCATACAAACCTTTCC+CGG | + | chr5.3:28412640-28412659 | None:intergenic | 35.0% | |
| CTTGATCTAGTTAACTGTAC+AGG | + | chr5.3:28411945-28411964 | None:intergenic | 35.0% | |
| GATACAGTTCATGAGAACTT+AGG | - | chr5.3:28411306-28411325 | MS.gene070569:intron | 35.0% | |
| GGTTTGTATGCTTATCTTAC+GGG | - | chr5.3:28412645-28412664 | MS.gene070569:CDS | 35.0% | |
| TATACCTTGAAGCCTTAACT+TGG | - | chr5.3:28412160-28412179 | MS.gene070569:intron | 35.0% | |
| TCTAGTTAACTGTACAGGAT+AGG | + | chr5.3:28411940-28411959 | None:intergenic | 35.0% | |
| TGAGCAATTGATACTTACCA+AGG | + | chr5.3:28411805-28411824 | None:intergenic | 35.0% | |
| TGGTAAGTATCAATTGCTCA+TGG | - | chr5.3:28411805-28411824 | MS.gene070569:intron | 35.0% | |
| TTTACAAACTAAATAGGGCG+TGG | - | chr5.3:28411712-28411731 | MS.gene070569:intron | 35.0% | |
| ! | CTTGTTCTCTTCCATTGTTT+TGG | - | chr5.3:28412040-28412059 | MS.gene070569:intron | 35.0% |
| ! | TTGTGTTGTTGAAATGTAGG+TGG | - | chr5.3:28410853-28410872 | MS.gene070569:intron | 35.0% |
| ! | TTTTGTAAGCTATCTTGGAG+AGG | + | chr5.3:28411359-28411378 | None:intergenic | 35.0% |
| !! | CTGGTTCTATAGGATCATTA+GGG | - | chr5.3:28412732-28412751 | MS.gene070569:intron | 35.0% |
| !! | TCTGGTTCTATAGGATCATT+AGG | - | chr5.3:28412731-28412750 | MS.gene070569:intron | 35.0% |
| !!! | CGTGTTTTGGAGGATTTTAT+AGG | + | chr5.3:28411676-28411695 | None:intergenic | 35.0% |
| !!! | TCTCTTCCATTGTTTTGGAA+TGG | - | chr5.3:28412045-28412064 | MS.gene070569:intron | 35.0% |
| !!! | TTCCATTGTTTTGGAATGGT+TGG | - | chr5.3:28412049-28412068 | MS.gene070569:intron | 35.0% |
| AACCAAATCCAACCAACACA+GGG | - | chr5.3:28410742-28410761 | MS.gene070569:CDS | 40.0% | |
| AATTGCAGATTCCACACTTG+AGG | - | chr5.3:28412528-28412547 | MS.gene070569:intron | 40.0% | |
| ACAAAACTCCACCATAAGCA+CGG | + | chr5.3:28412604-28412623 | None:intergenic | 40.0% | |
| ACTACTAAGAAGAGAGCTAG+TGG | - | chr5.3:28410892-28410911 | MS.gene070569:intron | 40.0% | |
| AGCCAGCATATGATTGTTCA+CGG | + | chr5.3:28412343-28412362 | None:intergenic | 40.0% | |
| ATCCGTGAACAATCATATGC+TGG | - | chr5.3:28412338-28412357 | MS.gene070569:intron | 40.0% | |
| CACCAACCATTCCAAAACAA+TGG | + | chr5.3:28412054-28412073 | None:intergenic | 40.0% | |
| CCTCAAAATTCAGAAGGCAA+AGG | - | chr5.3:28412792-28412811 | MS.gene070569:CDS | 40.0% | |
| CTACAGAGTACAAGAGATCA+AGG | - | chr5.3:28412552-28412571 | MS.gene070569:intron | 40.0% | |
| CTTGATAGGATGGGAAAAGA+AGG | + | chr5.3:28411600-28411619 | None:intergenic | 40.0% | |
| CTTGATCTCTTGTACTCTGT+AGG | + | chr5.3:28412554-28412573 | None:intergenic | 40.0% | |
| GAATTCTCTTGCCAGTAACA+GGG | + | chr5.3:28410927-28410946 | None:intergenic | 40.0% | |
| GGTGTGAACCAAACATTTAC+AGG | + | chr5.3:28411498-28411517 | None:intergenic | 40.0% | |
| GTATCAATTGCTCATGGCAT+TGG | - | chr5.3:28411811-28411830 | MS.gene070569:intron | 40.0% | |
| GTTACTGGCAAGAGAATTCA+AGG | - | chr5.3:28410928-28410947 | MS.gene070569:CDS | 40.0% | |
| TAGGATCATTAGGGCTTTCT+TGG | - | chr5.3:28412741-28412760 | MS.gene070569:intron | 40.0% | |
| TGAATTCTCTTGCCAGTAAC+AGG | + | chr5.3:28410928-28410947 | None:intergenic | 40.0% | |
| TGTTCCAAGTTAAGGCTTCA+AGG | + | chr5.3:28412167-28412186 | None:intergenic | 40.0% | |
| ! | AATGTGTGTCACTGCTATCT+TGG | - | chr5.3:28411053-28411072 | MS.gene070569:intron | 40.0% |
| ! | CCTTTGCCTTCTGAATTTTG+AGG | + | chr5.3:28412795-28412814 | None:intergenic | 40.0% |
| ! | TATAGGGTGTTAATGCCGTT+CGG | + | chr5.3:28411659-28411678 | None:intergenic | 40.0% |
| !!! | GTTTTGGAATGGTTGGTGTA+TGG | - | chr5.3:28412056-28412075 | MS.gene070569:intron | 40.0% |
| AAAGGAAAAGGTTGCCTCCA+AGG | - | chr5.3:28412810-28412829 | MS.gene070569:CDS | 45.0% | |
| ACGCAGGAAACTTGATAGGA+TGG | + | chr5.3:28411610-28411629 | None:intergenic | 45.0% | |
| CAACCAAATCCAACCAACAC+AGG | - | chr5.3:28410741-28410760 | MS.gene070569:CDS | 45.0% | |
| CGCAGGAAACTTGATAGGAT+GGG | + | chr5.3:28411609-28411628 | None:intergenic | 45.0% | |
| CTAGATCAAGATCCCAACCT+TGG | - | chr5.3:28411955-28411974 | MS.gene070569:intron | 45.0% | |
| GGTGTATGGTTATTCGAGCT+TGG | - | chr5.3:28412070-28412089 | MS.gene070569:intron | 45.0% | |
| ! | CTCATGGCATTGGAATACTG+AGG | - | chr5.3:28411821-28411840 | MS.gene070569:intron | 45.0% |
| ! | TTTGACAACCCTGTGTTGGT+TGG | + | chr5.3:28410753-28410772 | None:intergenic | 45.0% |
| !! | AACCCTGTGTTGGTTGGATT+TGG | + | chr5.3:28410747-28410766 | None:intergenic | 45.0% |
| !! | CAATCATATGCTGGCTCTGT+TGG | - | chr5.3:28412347-28412366 | MS.gene070569:intron | 45.0% |
| !! | CTGGCTTTGAATGCAAACCT+TGG | - | chr5.3:28411785-28411804 | MS.gene070569:intron | 45.0% |
| !! | GCTTATGGTGGAGTTTTGTC+TGG | - | chr5.3:28412605-28412624 | MS.gene070569:CDS | 45.0% |
| !! | TATGGTGGAGTTTTGTCTGG+AGG | - | chr5.3:28412608-28412627 | MS.gene070569:CDS | 45.0% |
| !! | GATAAAATTATATAAAATTA+TGG | - | chr5.3:28411572-28411591 | MS.gene070569:intron | 5.0% |
| !! | TAATATTAATTAAAAATAGT+AGG | + | chr5.3:28412206-28412225 | None:intergenic | 5.0% |
| ACTGTGAACCGTGCTTATGG+TGG | - | chr5.3:28412593-28412612 | MS.gene070569:CDS | 50.0% | |
| AGGACTGTGAACCGTGCTTA+TGG | - | chr5.3:28412590-28412609 | MS.gene070569:CDS | 50.0% | |
| AGGGCGTGGAGAAACTCATA+GGG | - | chr5.3:28411726-28411745 | MS.gene070569:intron | 50.0% | |
| CGTGGAGAAACTCATAGGGT+GGG | - | chr5.3:28411730-28411749 | MS.gene070569:intron | 50.0% | |
| GGGAACGCAGGAAACTTGAT+AGG | + | chr5.3:28411614-28411633 | None:intergenic | 50.0% | |
| TACTCTGTAGGCCTCAAGTG+TGG | + | chr5.3:28412542-28412561 | None:intergenic | 50.0% | |
| TAGGGCGTGGAGAAACTCAT+AGG | - | chr5.3:28411725-28411744 | MS.gene070569:intron | 50.0% | |
| TTCACAGTCCTGCGGTTTCT+AGG | + | chr5.3:28412581-28412600 | None:intergenic | 50.0% | |
| ! | TTGCCAGTAACAGGGCACTT+AGG | + | chr5.3:28410919-28410938 | None:intergenic | 50.0% |
| !! | GGGTTTTGACAACCCTGTGT+TGG | + | chr5.3:28410757-28410776 | None:intergenic | 50.0% |
| !!! | TTTTGTCTGGAGGTGCTGTC+CGG | - | chr5.3:28412618-28412637 | MS.gene070569:CDS | 50.0% |
| AAGCACGGTTCACAGTCCTG+CGG | + | chr5.3:28412589-28412608 | None:intergenic | 55.0% | |
| CACAGGGTTGTCAAAACCCC+TGG | - | chr5.3:28410758-28410777 | MS.gene070569:CDS | 55.0% | |
| CCTGCGTTCCCTATGCAGTT+CGG | - | chr5.3:28411623-28411642 | MS.gene070569:intron | 55.0% | |
| GCGTGGAGAAACTCATAGGG+TGG | - | chr5.3:28411729-28411748 | MS.gene070569:intron | 55.0% | |
| GGACCTAAGTGCCCTGTTAC+TGG | - | chr5.3:28410913-28410932 | MS.gene070569:CDS | 55.0% | |
| TGGTTGCGTAGCTGTGACGA+CGG | + | chr5.3:28410727-28410746 | None:intergenic | 55.0% | |
| !! | TTTGTCTGGAGGTGCTGTCC+GGG | - | chr5.3:28412619-28412638 | MS.gene070569:CDS | 55.0% |
| CAAGGCTGCCTAGAAACCGC+AGG | - | chr5.3:28412570-28412589 | MS.gene070569:intron | 60.0% | |
| CCGAACTGCATAGGGAACGC+AGG | + | chr5.3:28411626-28411645 | None:intergenic | 60.0% | |
| GTAGCTGTGACGACGGCGAT+AGG | + | chr5.3:28410720-28410739 | None:intergenic | 60.0% | |
| !! | CTGGAGGTGCTGTCCGGGAA+AGG | - | chr5.3:28412624-28412643 | MS.gene070569:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 28410701 | 28412837 | 28410701 | ID=MS.gene070569 |
| chr5.3 | mRNA | 28410701 | 28412837 | 28410701 | ID=MS.gene070569.t1;Parent=MS.gene070569 |
| chr5.3 | exon | 28412759 | 28412837 | 28412759 | ID=MS.gene070569.t1.exon1;Parent=MS.gene070569.t1 |
| chr5.3 | CDS | 28412759 | 28412837 | 28412759 | ID=cds.MS.gene070569.t1;Parent=MS.gene070569.t1 |
| chr5.3 | exon | 28412587 | 28412666 | 28412587 | ID=MS.gene070569.t1.exon2;Parent=MS.gene070569.t1 |
| chr5.3 | CDS | 28412587 | 28412666 | 28412587 | ID=cds.MS.gene070569.t1;Parent=MS.gene070569.t1 |
| chr5.3 | exon | 28410893 | 28411002 | 28410893 | ID=MS.gene070569.t1.exon3;Parent=MS.gene070569.t1 |
| chr5.3 | CDS | 28410893 | 28411002 | 28410893 | ID=cds.MS.gene070569.t1;Parent=MS.gene070569.t1 |
| chr5.3 | exon | 28410701 | 28410794 | 28410701 | ID=MS.gene070569.t1.exon4;Parent=MS.gene070569.t1 |
| chr5.3 | CDS | 28410701 | 28410794 | 28410701 | ID=cds.MS.gene070569.t1;Parent=MS.gene070569.t1 |
| Gene Sequence |
| Protein sequence |
