AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene070651

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070651.t1 MTR_3g118390 57.895 247 90 4 160 403 129 364 1.16e-94 289
MS.gene070651.t1 MTR_8g074350 49.393 247 110 5 160 403 83 317 5.63e-78 244
MS.gene070651.t1 MTR_8g074330 48.133 241 110 5 166 403 89 317 4.78e-75 236
MS.gene070651.t1 MTR_8g074335 44.215 242 107 5 166 404 91 307 1.16e-63 207
MS.gene070651.t1 MTR_7g110780 40.316 253 125 8 160 403 39 274 1.26e-57 190
MS.gene070651.t1 MTR_2g034680 33.761 234 139 5 166 392 65 289 7.96e-37 137
MS.gene070651.t1 MTR_2g099465 32.422 256 128 8 147 399 41 254 2.49e-36 134
MS.gene070651.t1 MTR_2g099470 33.712 264 127 10 139 399 64 282 4.04e-35 131
MS.gene070651.t1 MTR_1g105535 31.837 245 149 7 155 392 62 295 5.57e-34 129
MS.gene070651.t1 MTR_7g021640 31.197 234 144 6 166 392 69 292 1.08e-31 123
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070651.t1 AT3G12500 52.400 250 101 5 160 404 89 325 2.67e-86 266
MS.gene070651.t1 AT4G01700 42.041 245 121 7 166 403 47 277 3.39e-63 205
MS.gene070651.t1 AT1G02360 40.149 269 140 6 142 403 15 269 7.72e-62 201
MS.gene070651.t1 AT1G02360 40.149 269 140 6 142 403 67 321 3.32e-61 201
MS.gene070651.t1 AT1G02360 40.149 269 140 6 142 403 61 315 3.82e-61 201
MS.gene070651.t1 AT2G43590 32.129 249 119 9 145 391 56 256 1.40e-36 134
MS.gene070651.t1 AT3G54420 33.203 256 127 8 146 399 60 273 2.43e-35 131
MS.gene070651.t1 AT1G05850 31.356 236 145 6 161 389 64 289 1.45e-34 130
MS.gene070651.t1 AT1G05850 31.356 236 145 6 161 389 64 289 1.45e-34 130
MS.gene070651.t1 AT3G16920 31.197 234 145 5 166 392 77 301 8.10e-34 129
MS.gene070651.t1 AT2G43570 34.025 241 103 9 166 399 86 277 9.29e-34 127
MS.gene070651.t1 AT3G16920 31.197 234 145 5 166 392 101 325 2.74e-33 128
MS.gene070651.t1 AT2G43580 34.756 164 90 5 150 311 62 210 1.58e-31 121
MS.gene070651.t1 AT2G43610 39.227 181 92 6 132 310 61 225 5.39e-31 120
MS.gene070651.t1 AT2G43620 37.838 185 96 5 127 310 61 227 5.69e-31 120
MS.gene070651.t1 AT1G56680 36.872 179 95 7 136 313 64 225 4.70e-27 109
MS.gene070651.t1 AT1G56680 36.872 179 95 7 136 313 87 248 7.27e-27 109
MS.gene070651.t1 AT2G43600 39.355 155 74 7 158 310 102 238 4.50e-23 99.0
MS.gene070651.t1 AT2G43600 39.355 155 74 7 158 310 81 217 6.37e-23 97.8
MS.gene070651.t1 AT3G47540 24.473 237 115 11 166 399 39 214 5.13e-14 71.2

Find 143 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGAGTGCTTTATGGTTT+TGG 0.185971 7.1:-84805184 MS.gene070651:CDS
GCACTCTTGAAGGATATAAT+TGG 0.206068 7.1:+84805197 None:intergenic
TATCCTTCAAGAGTGCTTTA+TGG 0.208128 7.1:-84805190 MS.gene070651:CDS
AATCTATGTTTCCAGTTATC+TGG 0.221981 7.1:+84805285 None:intergenic
GGAGAAGGAGGAGGTGGAGG+AGG 0.243122 7.1:+84805746 None:intergenic
GAAGGAGGAGGTGGAGGAGG+GGG 0.251029 7.1:+84805749 None:intergenic
AGAAGGAGGAGGTGGAGGAG+GGG 0.270244 7.1:+84805748 None:intergenic
GGAGGAGAAGGAGGAGGTGG+AGG 0.299105 7.1:+84805743 None:intergenic
GAAGGAGGAGGTGGAGAAGG+GGG 0.299752 7.1:+84805839 None:intergenic
GGAGAAGGAGGTGGAGGAGA+AGG 0.300000 7.1:+84805701 None:intergenic
GGAGAAGGAGGTGGAGGAGA+AGG 0.300000 7.1:+84805791 None:intergenic
GAAGGAGGTGGAGGAGAAGG+GGG 0.301420 7.1:+84805704 None:intergenic
GAAGGAGGTGGAGGAGAAGG+GGG 0.301420 7.1:+84805794 None:intergenic
AGAAGGAGGAGGTGGAGAAG+GGG 0.311010 7.1:+84805838 None:intergenic
AGAAGGAGGTGGAGGAGAAG+GGG 0.317057 7.1:+84805703 None:intergenic
AGAAGGAGGTGGAGGAGAAG+GGG 0.317057 7.1:+84805793 None:intergenic
ACCGAACTTGGGGAAGGTTT+TGG 0.324729 7.1:+84805514 None:intergenic
GGAGAAGGAGAAGGAGGAGG+GGG 0.325667 7.1:+84805680 None:intergenic
GGAGAAGGAGAAGGAGGAGG+GGG 0.325667 7.1:+84805770 None:intergenic
GGAGGAGGAGAAGGAGAAGG+AGG 0.327660 7.1:+84805860 None:intergenic
GGTGGAGGAGAAGGAGGAGG+TGG 0.331582 7.1:+84805740 None:intergenic
GGAGGTGGAGAAGGAGGTGG+AGG 0.333161 7.1:+84805725 None:intergenic
GGAGGTGGAGAAGGAGGTGG+AGG 0.333161 7.1:+84805815 None:intergenic
GAGAAGGAGGTGGAGGAGAA+GGG 0.335710 7.1:+84805702 None:intergenic
GAGAAGGAGGTGGAGGAGAA+GGG 0.335710 7.1:+84805792 None:intergenic
GAAGGAGGTGGAGGAGAAGG+GGG 0.340830 7.1:+84805890 None:intergenic
GGAGAAGGAGGTGGAGGAGA+AGG 0.343175 7.1:+84805887 None:intergenic
AGAAGGAGGTGGAGGAGAAG+GGG 0.353336 7.1:+84805889 None:intergenic
GGGGAGAAGGAGAAGGAGGA+GGG 0.355021 7.1:+84805678 None:intergenic
GGGGAGAAGGAGAAGGAGGA+GGG 0.355021 7.1:+84805768 None:intergenic
ATGAAGTTATGGCTGGAATA+TGG 0.358475 7.1:-84805115 MS.gene070651:CDS
GGAGAAGGAGGAGGTGGAGA+AGG 0.359221 7.1:+84805836 None:intergenic
GGGAGAAGGAGAAGGAGGAG+GGG 0.360042 7.1:+84805679 None:intergenic
GGGAGAAGGAGAAGGAGGAG+GGG 0.360042 7.1:+84805769 None:intergenic
GGAGAAGGAGGAGGTGGAGA+AGG 0.361976 7.1:+84805872 None:intergenic
GGAGAAGGAGAAGGAGGAGG+TGG 0.367053 7.1:+84805866 None:intergenic
GGTGCTTGGCGGGTCGAGAT+AGG 0.370143 7.1:-84806027 MS.gene070651:CDS
GAGAAGGAGGAGGTGGAGGA+GGG 0.374457 7.1:+84805747 None:intergenic
GGAGAAGGAGGTGGAGGAGA+AGG 0.375084 7.1:+84805731 None:intergenic
GGAGAAGGAGGTGGAGGAGA+AGG 0.375084 7.1:+84805821 None:intergenic
GGAGGAGAAGGAGAAGGAGG+AGG 0.378273 7.1:+84805863 None:intergenic
AGTACCTACATTACCGAACT+TGG 0.383717 7.1:+84805502 None:intergenic
ATAGTACTACTAATTATAAT+AGG 0.386077 7.1:-84806061 MS.gene070651:CDS
AGGGGTCCATTCCAGATAAC+TGG 0.388340 7.1:-84805296 MS.gene070651:CDS
GAGAAGGAGGAGGTGGAGAA+GGG 0.392207 7.1:+84805837 None:intergenic
GGTGGAGGAGAAGGAGGAGG+TGG 0.395791 7.1:+84805830 None:intergenic
TACTACAAATTCAAAGAAAT+CGG 0.399460 7.1:-84805483 MS.gene070651:CDS
GAGAAGGAGGTGGAGGAGAA+GGG 0.399675 7.1:+84805888 None:intergenic
GGGTCAGTGGCAACAAGGTC+TGG 0.410481 7.1:+84805218 None:intergenic
GGAGGTGGAGAAGGAGGTGG+AGG 0.414765 7.1:+84805881 None:intergenic
AAACCATAAAGCACTCTTGA+AGG 0.417998 7.1:+84805187 None:intergenic
ATATTCCAGCCATAACTTCA+TGG 0.424648 7.1:+84805117 None:intergenic
GAAGGAGGTGGAGGAGAAGG+AGG 0.426671 7.1:+84805734 None:intergenic
GAAGGAGGTGGAGGAGAAGG+AGG 0.426671 7.1:+84805824 None:intergenic
GGAAGATGTGGACGTGCAAT+AGG 0.428014 7.1:-84805260 MS.gene070651:CDS
GGAGGAGGTGGAGAAGGAGG+TGG 0.429509 7.1:+84805878 None:intergenic
AACTGAAGGACCTTACGATT+GGG 0.431682 7.1:-84805411 MS.gene070651:CDS
GAAGGAGGAGGTGGAGAAGG+AGG 0.433472 7.1:+84805875 None:intergenic
GCCAAAACCTTCCCCAAGTT+CGG 0.444099 7.1:-84805515 MS.gene070651:CDS
CAGAGAAGGTATGGAGGATA+CGG 0.447633 7.1:-84805068 MS.gene070651:CDS
TCTGAATTCCCATGTGCTCC+CGG 0.451292 7.1:-84805335 MS.gene070651:CDS
TCCTCCACAGGAGGAGGAGG+GGG 0.456429 7.1:+84805641 None:intergenic
TACTCCTCCACAGGAGGAGG+AGG 0.457097 7.1:+84805638 None:intergenic
CACTCTTGAAGGATATAATT+GGG 0.461047 7.1:+84805198 None:intergenic
GACATACTACTTGTTGCATA+TGG 0.464190 7.1:-84804933 MS.gene070651:CDS
GGAGGTGGAGGAGAAGGAGG+AGG 0.467733 7.1:+84805737 None:intergenic
GGAGGTGGAGGAGAAGGAGG+AGG 0.467733 7.1:+84805827 None:intergenic
ATGTTTCCAGTTATCTGGAA+TGG 0.476826 7.1:+84805290 None:intergenic
GCCGGCCTGCCATGAAGTTA+TGG 0.478726 7.1:-84805126 MS.gene070651:CDS
ATAACTGGAAACATAGATTA+CGG 0.482252 7.1:-84805281 MS.gene070651:CDS
CAGTAGTCCCTGGTCGGATA+CGG 0.482503 7.1:+84805368 None:intergenic
GTGCTTGGCGGGTCGAGATA+GGG 0.484081 7.1:-84806026 MS.gene070651:CDS
CCAATCCGATCCATCTCGCT+TGG 0.487282 7.1:+84804975 None:intergenic
CTAATTATAATAGGATCTAC+AGG 0.488991 7.1:-84806052 MS.gene070651:CDS
ATCTACAGGATGGTGCTTGG+CGG 0.490040 7.1:-84806038 MS.gene070651:CDS
TATTGCTTCCCGGGAGCACA+TGG 0.495422 7.1:+84805326 None:intergenic
GCCTGCCATGAAGTTATGGC+TGG 0.503377 7.1:-84805122 MS.gene070651:CDS
GATCAACTTCAGAGAAGGTA+TGG 0.504828 7.1:-84805077 MS.gene070651:CDS
CAACTGAAGGACCTTACGAT+TGG 0.508041 7.1:-84805412 MS.gene070651:CDS
CCTACCGTAGTATTGCTTCC+CGG 0.511349 7.1:+84805316 None:intergenic
GGAGTACCTCATCTCGGTAA+AGG 0.513508 7.1:-84805621 MS.gene070651:CDS
GGAAACTATGTTGAATGCTA+TGG 0.514331 7.1:-84804912 MS.gene070651:CDS
AGTAGTACTATTACTACTGT+CGG 0.516707 7.1:+84806073 None:intergenic
TCTACAGGATGGTGCTTGGC+GGG 0.521803 7.1:-84806037 MS.gene070651:CDS
CTCCTCCACAGGAGGAGGAG+GGG 0.527159 7.1:+84805640 None:intergenic
TCCAGCCATAACTTCATGGC+AGG 0.528982 7.1:+84805121 None:intergenic
GCCATAACTTCATGGCAGGC+CGG 0.536400 7.1:+84805125 None:intergenic
GTACCTACATTACCGAACTT+GGG 0.537559 7.1:+84805503 None:intergenic
AGGATCTACAGGATGGTGCT+TGG 0.538586 7.1:-84806041 MS.gene070651:CDS
CTGAATTCCCATGTGCTCCC+GGG 0.540245 7.1:-84805334 MS.gene070651:CDS
TGAAGGAACCGTATCCGACC+AGG 0.540571 7.1:-84805376 MS.gene070651:CDS
GTGGATTATGCTGCAGTGCA+TGG 0.544281 7.1:-84805997 MS.gene070651:CDS
GCTTGGTTCGCAGTAGTCCC+TGG 0.544396 7.1:+84805358 None:intergenic
TATACGTCGGATGTCTGAAT+CGG 0.546764 7.1:+84805152 None:intergenic
CTACCGTAGTATTGCTTCCC+GGG 0.547334 7.1:+84805317 None:intergenic
AGGTACTCCTCCACAGGAGG+AGG 0.550430 7.1:+84805635 None:intergenic
CCAAGCGAGATGGATCGGAT+TGG 0.551091 7.1:-84804975 MS.gene070651:CDS
GTAGTACTATTACTACTGTC+GGG 0.560539 7.1:+84806074 None:intergenic
TTGGGGATATTGCTTTGTGA+AGG 0.560715 7.1:-84805393 MS.gene070651:CDS
GCACATGGGAATTCAGAGCT+TGG 0.561314 7.1:+84805341 None:intergenic
CCGGGAAGCAATACTACGGT+AGG 0.561794 7.1:-84805316 MS.gene070651:CDS
TGACTCCAAGCGAGATGGAT+CGG 0.563979 7.1:-84804980 MS.gene070651:CDS
ACTCCTCCACAGGAGGAGGA+GGG 0.568941 7.1:+84805639 None:intergenic
TACATTACCGAACTTGGGGA+AGG 0.581411 7.1:+84805508 None:intergenic
AGAGAAGGTATGGAGGATAC+GGG 0.583219 7.1:-84805067 MS.gene070651:CDS
GACATCCGACGTATATATGC+CGG 0.585214 7.1:-84805144 MS.gene070651:CDS
AAGCAATATCCCCAATCGTA+AGG 0.585697 7.1:+84805401 None:intergenic
CGGGAAGCAATACTACGGTA+GGG 0.588518 7.1:-84805315 MS.gene070651:CDS
GAAGGATATAATTGGGTCAG+TGG 0.591004 7.1:+84805205 None:intergenic
GTTCATGACTCCAAGCGAGA+TGG 0.591557 7.1:-84804985 MS.gene070651:CDS
TGGATTATGCTGCAGTGCAT+GGG 0.592592 7.1:-84805996 MS.gene070651:CDS
CTTGGCGGGTCGAGATAGGG+AGG 0.596615 7.1:-84806023 MS.gene070651:CDS
ACTGAAGGACCTTACGATTG+GGG 0.597185 7.1:-84805410 MS.gene070651:CDS
AACATAGATTACGGAAGATG+TGG 0.601170 7.1:-84805272 MS.gene070651:CDS
TTCCCCAAGTTCGGTAATGT+AGG 0.601264 7.1:-84805506 MS.gene070651:CDS
ATACGGGATGACAACTTATG+TGG 0.605274 7.1:-84805051 MS.gene070651:CDS
AAAACTGGAAATGTGGAGGT+GGG 0.608412 7.1:-84805007 MS.gene070651:CDS
TGAAATCCTTTACCGAGATG+AGG 0.610470 7.1:+84805615 None:intergenic
ATGCTGATCAACTTCAGAGA+AGG 0.611620 7.1:-84805082 MS.gene070651:CDS
GGTTCGCAGTAGTCCCTGGT+CGG 0.614886 7.1:+84805362 None:intergenic
TACCTACATTACCGAACTTG+GGG 0.615827 7.1:+84805504 None:intergenic
CACGATGATGATCTGTGTGA+GGG 0.618288 7.1:-84805575 MS.gene070651:CDS
TGAAGTTGATCAGCATGAGA+AGG 0.618426 7.1:+84805089 None:intergenic
GAGATGAGGTACTCCTCCAC+AGG 0.622328 7.1:+84805629 None:intergenic
ACGTCGGATGTCTGAATCGG+AGG 0.626982 7.1:+84805155 None:intergenic
GGTCGAGATAGGGAGGAATG+TGG 0.628829 7.1:-84806016 MS.gene070651:CDS
TGTGGAGGAGTACCTCATCT+CGG 0.630847 7.1:-84805627 MS.gene070651:CDS
ACAAGTGGTGGATCAACTGA+AGG 0.633335 7.1:-84805425 MS.gene070651:CDS
GATGATCTGTGTGAGGGGAA+AGG 0.633834 7.1:-84805569 MS.gene070651:CDS
CAAAGTTCTCACGAAACAAG+TGG 0.637024 7.1:-84805440 MS.gene070651:CDS
TAATTGGGTCAGTGGCAACA+AGG 0.640917 7.1:+84805213 None:intergenic
GGGAAGCAATACTACGGTAG+GGG 0.642706 7.1:-84805314 MS.gene070651:CDS
ATGAGGTACTCCTCCACAGG+AGG 0.644606 7.1:+84805632 None:intergenic
AGATCAATTGAAAGCCATTG+CGG 0.647787 7.1:-84805965 MS.gene070651:CDS
TTATAATAGGATCTACAGGA+TGG 0.658343 7.1:-84806048 MS.gene070651:CDS
CAACTTCAGAGAAGGTATGG+AGG 0.659279 7.1:-84805074 MS.gene070651:CDS
ATTGCTTCCCGGGAGCACAT+GGG 0.672296 7.1:+84805327 None:intergenic
AGTTCTCACGAAACAAGTGG+TGG 0.683018 7.1:-84805437 MS.gene070651:CDS
GCTCCCGGGAAGCAATACTA+CGG 0.687521 7.1:-84805320 MS.gene070651:CDS
GAAGGAACCGTATCCGACCA+GGG 0.689660 7.1:-84805375 MS.gene070651:CDS
TCACGATGATGATCTGTGTG+AGG 0.695121 7.1:-84805576 MS.gene070651:CDS
ACGATGATGATCTGTGTGAG+GGG 0.740758 7.1:-84805574 MS.gene070651:CDS
GCAGGCCGGCATATATACGT+CGG 0.755872 7.1:+84805139 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGTACTACTAATTATAAT+AGG - chr7.1:84804908-84804927 MS.gene070651:CDS 15.0%
!! TACTACAAATTCAAAGAAAT+CGG - chr7.1:84805486-84805505 MS.gene070651:CDS 20.0%
!!! ATTTCCAGTTTTTGAATTTT+TGG + chr7.1:84805954-84805973 None:intergenic 20.0%
!!! TTTCCAGTTTTTGAATTTTT+GGG + chr7.1:84805953-84805972 None:intergenic 20.0%
! AAATTCAAAAACTGGAAATG+TGG - chr7.1:84805955-84805974 MS.gene070651:CDS 25.0%
! ATAACTGGAAACATAGATTA+CGG - chr7.1:84805688-84805707 MS.gene070651:CDS 25.0%
! CTAATTATAATAGGATCTAC+AGG - chr7.1:84804917-84804936 MS.gene070651:CDS 25.0%
AATCTATGTTTCCAGTTATC+TGG + chr7.1:84805687-84805706 None:intergenic 30.0%
AGTAGTACTATTACTACTGT+CGG + chr7.1:84804899-84804918 None:intergenic 30.0%
CACTCTTGAAGGATATAATT+GGG + chr7.1:84805774-84805793 None:intergenic 30.0%
TTATAATAGGATCTACAGGA+TGG - chr7.1:84804921-84804940 MS.gene070651:CDS 30.0%
AACATAGATTACGGAAGATG+TGG - chr7.1:84805697-84805716 MS.gene070651:CDS 35.0%
AGATCAATTGAAAGCCATTG+CGG - chr7.1:84805004-84805023 MS.gene070651:CDS 35.0%
ATATTCCAGCCATAACTTCA+TGG + chr7.1:84805855-84805874 None:intergenic 35.0%
ATGAAGTTATGGCTGGAATA+TGG - chr7.1:84805854-84805873 MS.gene070651:CDS 35.0%
ATGTTTCCAGTTATCTGGAA+TGG + chr7.1:84805682-84805701 None:intergenic 35.0%
CCTCCCAAAAATTCAAAAAC+TGG - chr7.1:84805947-84805966 MS.gene070651:CDS 35.0%
GCACTCTTGAAGGATATAAT+TGG + chr7.1:84805775-84805794 None:intergenic 35.0%
GGAAACTATGTTGAATGCTA+TGG - chr7.1:84806057-84806076 MS.gene070651:CDS 35.0%
GTAGTACTATTACTACTGTC+GGG + chr7.1:84804898-84804917 None:intergenic 35.0%
TTCAAAAACTGGAAATGTGG+AGG - chr7.1:84805958-84805977 MS.gene070651:CDS 35.0%
! AAACCATAAAGCACTCTTGA+AGG + chr7.1:84805785-84805804 None:intergenic 35.0%
! GACATACTACTTGTTGCATA+TGG - chr7.1:84806036-84806055 MS.gene070651:CDS 35.0%
!! CCAGTTTTTGAATTTTTGGG+AGG + chr7.1:84805950-84805969 None:intergenic 35.0%
!! TATCCTTCAAGAGTGCTTTA+TGG - chr7.1:84805779-84805798 MS.gene070651:CDS 35.0%
!!! TCAAGAGTGCTTTATGGTTT+TGG - chr7.1:84805785-84805804 MS.gene070651:CDS 35.0%
AAAAACTGGAAATGTGGAGG+TGG - chr7.1:84805961-84805980 MS.gene070651:CDS 40.0%
AAAACTGGAAATGTGGAGGT+GGG - chr7.1:84805962-84805981 MS.gene070651:CDS 40.0%
AACTGAAGGACCTTACGATT+GGG - chr7.1:84805558-84805577 MS.gene070651:CDS 40.0%
AAGCAATATCCCCAATCGTA+AGG + chr7.1:84805571-84805590 None:intergenic 40.0%
AGTACCTACATTACCGAACT+TGG + chr7.1:84805470-84805489 None:intergenic 40.0%
ATACGGGATGACAACTTATG+TGG - chr7.1:84805918-84805937 MS.gene070651:CDS 40.0%
ATGCTGATCAACTTCAGAGA+AGG - chr7.1:84805887-84805906 MS.gene070651:CDS 40.0%
CAAAGTTCTCACGAAACAAG+TGG - chr7.1:84805529-84805548 MS.gene070651:CDS 40.0%
GAAGGATATAATTGGGTCAG+TGG + chr7.1:84805767-84805786 None:intergenic 40.0%
GATCAACTTCAGAGAAGGTA+TGG - chr7.1:84805892-84805911 MS.gene070651:CDS 40.0%
GTACCTACATTACCGAACTT+GGG + chr7.1:84805469-84805488 None:intergenic 40.0%
TACCTACATTACCGAACTTG+GGG + chr7.1:84805468-84805487 None:intergenic 40.0%
TATACGTCGGATGTCTGAAT+CGG + chr7.1:84805820-84805839 None:intergenic 40.0%
TGAAATCCTTTACCGAGATG+AGG + chr7.1:84805357-84805376 None:intergenic 40.0%
TTGGGGATATTGCTTTGTGA+AGG - chr7.1:84805576-84805595 MS.gene070651:CDS 40.0%
! TGAAGTTGATCAGCATGAGA+AGG + chr7.1:84805883-84805902 None:intergenic 40.0%
ACGATGATGATCTGTGTGAG+GGG - chr7.1:84805395-84805414 MS.gene070651:CDS 45.0%
ACTGAAGGACCTTACGATTG+GGG - chr7.1:84805559-84805578 MS.gene070651:CDS 45.0%
AGTTCTCACGAAACAAGTGG+TGG - chr7.1:84805532-84805551 MS.gene070651:CDS 45.0%
CAACTGAAGGACCTTACGAT+TGG - chr7.1:84805557-84805576 MS.gene070651:CDS 45.0%
CACGATGATGATCTGTGTGA+GGG - chr7.1:84805394-84805413 MS.gene070651:CDS 45.0%
GACATCCGACGTATATATGC+CGG - chr7.1:84805825-84805844 MS.gene070651:CDS 45.0%
TAATTGGGTCAGTGGCAACA+AGG + chr7.1:84805759-84805778 None:intergenic 45.0%
TACATTACCGAACTTGGGGA+AGG + chr7.1:84805464-84805483 None:intergenic 45.0%
TCACGATGATGATCTGTGTG+AGG - chr7.1:84805393-84805412 MS.gene070651:CDS 45.0%
TGGATTATGCTGCAGTGCAT+GGG - chr7.1:84804973-84804992 MS.gene070651:CDS 45.0%
TTCCCCAAGTTCGGTAATGT+AGG - chr7.1:84805463-84805482 MS.gene070651:CDS 45.0%
! AGAGAAGGTATGGAGGATAC+GGG - chr7.1:84805902-84805921 MS.gene070651:CDS 45.0%
! CAACTTCAGAGAAGGTATGG+AGG - chr7.1:84805895-84805914 MS.gene070651:CDS 45.0%
! CAGAGAAGGTATGGAGGATA+CGG - chr7.1:84805901-84805920 MS.gene070651:CDS 45.0%
!! ACAAGTGGTGGATCAACTGA+AGG - chr7.1:84805544-84805563 MS.gene070651:CDS 45.0%
AGGATCTACAGGATGGTGCT+TGG - chr7.1:84804928-84804947 MS.gene070651:CDS 50.0%
AGGGGTCCATTCCAGATAAC+TGG - chr7.1:84805673-84805692 MS.gene070651:CDS 50.0%
ATCTACAGGATGGTGCTTGG+CGG - chr7.1:84804931-84804950 MS.gene070651:CDS 50.0%
CCTACCGTAGTATTGCTTCC+CGG + chr7.1:84805656-84805675 None:intergenic 50.0%
CGGGAAGCAATACTACGGTA+GGG - chr7.1:84805654-84805673 MS.gene070651:CDS 50.0%
CTACCGTAGTATTGCTTCCC+GGG + chr7.1:84805655-84805674 None:intergenic 50.0%
GATGATCTGTGTGAGGGGAA+AGG - chr7.1:84805400-84805419 MS.gene070651:CDS 50.0%
GCACATGGGAATTCAGAGCT+TGG + chr7.1:84805631-84805650 None:intergenic 50.0%
GCCAAAACCTTCCCCAAGTT+CGG - chr7.1:84805454-84805473 MS.gene070651:CDS 50.0%
GGAAGATGTGGACGTGCAAT+AGG - chr7.1:84805709-84805728 MS.gene070651:CDS 50.0%
GGGAAGCAATACTACGGTAG+GGG - chr7.1:84805655-84805674 MS.gene070651:CDS 50.0%
GTTCATGACTCCAAGCGAGA+TGG - chr7.1:84805984-84806003 MS.gene070651:CDS 50.0%
TCCAGCCATAACTTCATGGC+AGG + chr7.1:84805851-84805870 None:intergenic 50.0%
TCTGAATTCCCATGTGCTCC+CGG - chr7.1:84805634-84805653 MS.gene070651:CDS 50.0%
TGACTCCAAGCGAGATGGAT+CGG - chr7.1:84805989-84806008 MS.gene070651:CDS 50.0%
! ACCGAACTTGGGGAAGGTTT+TGG + chr7.1:84805458-84805477 None:intergenic 50.0%
! GGAGTACCTCATCTCGGTAA+AGG - chr7.1:84805348-84805367 MS.gene070651:CDS 50.0%
! GTGGATTATGCTGCAGTGCA+TGG - chr7.1:84804972-84804991 MS.gene070651:CDS 50.0%
!! TGTGGAGGAGTACCTCATCT+CGG - chr7.1:84805342-84805361 MS.gene070651:CDS 50.0%
ACGTCGGATGTCTGAATCGG+AGG + chr7.1:84805817-84805836 None:intergenic 55.0%
AGAAGGAGGAGGTGGAGAAG+GGG + chr7.1:84805098-84805117 None:intergenic 55.0%
AGAAGGAGGTGGAGGAGAAG+GGG + chr7.1:84805083-84805102 None:intergenic 55.0%
CAGTAGTCCCTGGTCGGATA+CGG + chr7.1:84805604-84805623 None:intergenic 55.0%
CCAAGCGAGATGGATCGGAT+TGG - chr7.1:84805994-84806013 MS.gene070651:CDS 55.0%
CCAATCCGATCCATCTCGCT+TGG + chr7.1:84805997-84806016 None:intergenic 55.0%
CCGGGAAGCAATACTACGGT+AGG - chr7.1:84805653-84805672 MS.gene070651:CDS 55.0%
CTGAATTCCCATGTGCTCCC+GGG - chr7.1:84805635-84805654 MS.gene070651:CDS 55.0%
GAAGGAACCGTATCCGACCA+GGG - chr7.1:84805594-84805613 MS.gene070651:CDS 55.0%
GAGAAGGAGGAGGTGGAGAA+GGG + chr7.1:84805099-84805118 None:intergenic 55.0%
GAGAAGGAGGTGGAGGAGAA+GGG + chr7.1:84805084-84805103 None:intergenic 55.0%
GCAGGCCGGCATATATACGT+CGG + chr7.1:84805833-84805852 None:intergenic 55.0%
GCCATAACTTCATGGCAGGC+CGG + chr7.1:84805847-84805866 None:intergenic 55.0%
GCCTGCCATGAAGTTATGGC+TGG - chr7.1:84805847-84805866 MS.gene070651:CDS 55.0%
GCTCCCGGGAAGCAATACTA+CGG - chr7.1:84805649-84805668 MS.gene070651:CDS 55.0%
GGTCGAGATAGGGAGGAATG+TGG - chr7.1:84804953-84804972 MS.gene070651:CDS 55.0%
TCTACAGGATGGTGCTTGGC+GGG - chr7.1:84804932-84804951 MS.gene070651:CDS 55.0%
TGAAGGAACCGTATCCGACC+AGG - chr7.1:84805593-84805612 MS.gene070651:CDS 55.0%
! ATGAGGTACTCCTCCACAGG+AGG + chr7.1:84805340-84805359 None:intergenic 55.0%
! ATTGCTTCCCGGGAGCACAT+GGG + chr7.1:84805645-84805664 None:intergenic 55.0%
! GAGATGAGGTACTCCTCCAC+AGG + chr7.1:84805343-84805362 None:intergenic 55.0%
! TATTGCTTCCCGGGAGCACA+TGG + chr7.1:84805646-84805665 None:intergenic 55.0%
ACTCCTCCACAGGAGGAGGA+GGG + chr7.1:84805333-84805352 None:intergenic 60.0%
AGAAGGAGGAGGTGGAGGAG+GGG + chr7.1:84805224-84805243 None:intergenic 60.0%
AGGTACTCCTCCACAGGAGG+AGG + chr7.1:84805337-84805356 None:intergenic 60.0%
GAAGGAGGAGGTGGAGAAGG+AGG + chr7.1:84805097-84805116 None:intergenic 60.0%
GAAGGAGGAGGTGGAGAAGG+GGG + chr7.1:84805097-84805116 None:intergenic 60.0%
GAAGGAGGTGGAGGAGAAGG+AGG + chr7.1:84805082-84805101 None:intergenic 60.0%
GAAGGAGGTGGAGGAGAAGG+GGG + chr7.1:84805082-84805101 None:intergenic 60.0%
GAGAAGGAGGAGGTGGAGGA+GGG + chr7.1:84805225-84805244 None:intergenic 60.0%
GCCGGCCTGCCATGAAGTTA+TGG - chr7.1:84805843-84805862 MS.gene070651:CDS 60.0%
GGAGAAGGAGAAGGAGGAGG+GGG + chr7.1:84805106-84805125 None:intergenic 60.0%
GGAGAAGGAGAAGGAGGAGG+TGG + chr7.1:84805106-84805125 None:intergenic 60.0%
GGAGAAGGAGGAGGTGGAGA+AGG + chr7.1:84805100-84805119 None:intergenic 60.0%
GGAGAAGGAGGTGGAGGAGA+AGG + chr7.1:84805085-84805104 None:intergenic 60.0%
GGAGGAGAAGGAGAAGGAGG+AGG + chr7.1:84805109-84805128 None:intergenic 60.0%
GGAGGAGGAGAAGGAGAAGG+AGG + chr7.1:84805112-84805131 None:intergenic 60.0%
GGGAGAAGGAGAAGGAGGAG+GGG + chr7.1:84805203-84805222 None:intergenic 60.0%
GGGGAGAAGGAGAAGGAGGA+GGG + chr7.1:84805204-84805223 None:intergenic 60.0%
GGGTCAGTGGCAACAAGGTC+TGG + chr7.1:84805754-84805773 None:intergenic 60.0%
GGTTCGCAGTAGTCCCTGGT+CGG + chr7.1:84805610-84805629 None:intergenic 60.0%
TACTCCTCCACAGGAGGAGG+AGG + chr7.1:84805334-84805353 None:intergenic 60.0%
! GCTTGGTTCGCAGTAGTCCC+TGG + chr7.1:84805614-84805633 None:intergenic 60.0%
! GTGCTTGGCGGGTCGAGATA+GGG - chr7.1:84804943-84804962 MS.gene070651:CDS 60.0%
AGGAGGAGGAGGAGGAGGAG+GGG + chr7.1:84805035-84805054 None:intergenic 65.0%
AGGAGGAGGGGGAGGAGAAG+GGG + chr7.1:84805320-84805339 None:intergenic 65.0%
CTCCTCCACAGGAGGAGGAG+GGG + chr7.1:84805332-84805351 None:intergenic 65.0%
GAAGGAGGAGGGGGAGAAGG+AGG + chr7.1:84805193-84805212 None:intergenic 65.0%
GAAGGAGGAGGTGGAGGAGG+GGG + chr7.1:84805223-84805242 None:intergenic 65.0%
GAAGGGGGAGGTGGAGAAGG+AGG + chr7.1:84805163-84805182 None:intergenic 65.0%
GAGGAGGAGGAGGAGGAGGA+GGG + chr7.1:84805036-84805055 None:intergenic 65.0%
GAGGAGGAGGGGGAGGAGAA+GGG + chr7.1:84805321-84805340 None:intergenic 65.0%
GGAGAAGGAGGAGGGGGAGA+AGG + chr7.1:84805196-84805215 None:intergenic 65.0%
GGAGAAGGAGGAGGTGGAGG+AGG + chr7.1:84805226-84805245 None:intergenic 65.0%
GGAGAAGGGGGAGGAGGAGA+AGG + chr7.1:84805121-84805140 None:intergenic 65.0%
GGAGAAGGGGGAGGTGGAGA+AGG + chr7.1:84805166-84805185 None:intergenic 65.0%
GGAGGAGAAGGAGGAGGTGG+AGG + chr7.1:84805139-84805158 None:intergenic 65.0%
GGAGGAGGGGGAGAAGGAGA+AGG + chr7.1:84805211-84805230 None:intergenic 65.0%
GGAGGAGGTGGAGAAGGAGG+TGG + chr7.1:84805094-84805113 None:intergenic 65.0%
GGAGGGGGAGAAGGAGAAGG+AGG + chr7.1:84805208-84805227 None:intergenic 65.0%
GGAGGTGGAGAAGGAGGTGG+AGG + chr7.1:84805091-84805110 None:intergenic 65.0%
GGAGGTGGAGGAGAAGGAGG+AGG + chr7.1:84805145-84805164 None:intergenic 65.0%
GGGGGAGAAGGAGAAGGAGG+AGG + chr7.1:84805205-84805224 None:intergenic 65.0%
GGGGGAGGAGGAGAAGGAGA+AGG + chr7.1:84805115-84805134 None:intergenic 65.0%
GGTGGAGGAGAAGGAGGAGG+TGG + chr7.1:84805142-84805161 None:intergenic 65.0%
TCCTCCACAGGAGGAGGAGG+GGG + chr7.1:84805331-84805350 None:intergenic 65.0%
! CTTGGCGGGTCGAGATAGGG+AGG - chr7.1:84804946-84804965 MS.gene070651:CDS 65.0%
! GGTGCTTGGCGGGTCGAGAT+AGG - chr7.1:84804942-84804961 MS.gene070651:CDS 65.0%
AGGGGGAGGAGAAGGGGGAG+GGG + chr7.1:84805314-84805333 None:intergenic 70.0%
GAAGGGGGAGGAGGAGGAGG+AGG + chr7.1:84805067-84805086 None:intergenic 70.0%
GAGGAGGAGGAGGAGGGGGA+GGG + chr7.1:84805030-84805049 None:intergenic 70.0%
GAGGGGGAGGAGAAGGGGGA+GGG + chr7.1:84805315-84805334 None:intergenic 70.0%
GGAGAAGGGGGAGGAGGAGG+AGG + chr7.1:84805070-84805089 None:intergenic 70.0%
GGAGAAGGGGGAGGGGGAGA+AGG + chr7.1:84805307-84805326 None:intergenic 70.0%
GGAGGAGAAGGGGGAGGAGG+AGG + chr7.1:84805073-84805092 None:intergenic 70.0%
GGAGGAGGAGGAGGAGGAGG+AGG + chr7.1:84805034-84805053 None:intergenic 70.0%
GGAGGAGGAGGAGGAGGAGG+GGG + chr7.1:84805034-84805053 None:intergenic 70.0%
GGAGGAGGAGGGGGAGGAGA+AGG + chr7.1:84805322-84805341 None:intergenic 70.0%
GGAGGAGGGGGAGAAGGAGG+TGG + chr7.1:84805190-84805209 None:intergenic 70.0%
GGAGGAGGGGGAGGAGAAGG+GGG + chr7.1:84805319-84805338 None:intergenic 70.0%
GGAGGAGGTGGAGAAGGGGG+AGG + chr7.1:84805130-84805149 None:intergenic 70.0%
GGAGGGGGAGAAGGAGGTGG+AGG + chr7.1:84805187-84805206 None:intergenic 70.0%
GGAGGTGGAGAAGGGGGAGG+AGG + chr7.1:84805127-84805146 None:intergenic 70.0%
GGAGGTGGAGGAGAAGGGGG+AGG + chr7.1:84805079-84805098 None:intergenic 70.0%
GGAGGTGGAGGAGGGGGAGA+AGG + chr7.1:84805217-84805236 None:intergenic 70.0%
GGGGGAGGGGGAGAAGGAGA+AGG + chr7.1:84805301-84805320 None:intergenic 70.0%
GGGGGAGGTGGAGAAGGAGG+TGG + chr7.1:84805160-84805179 None:intergenic 70.0%
GGTGGAGGAGAAGGGGGAGG+AGG + chr7.1:84805076-84805095 None:intergenic 70.0%
GGTGGAGGAGAAGGGGGAGG+TGG + chr7.1:84805076-84805095 None:intergenic 70.0%
TCCACAGGAGGAGGAGGGGG+AGG + chr7.1:84805328-84805347 None:intergenic 70.0%
TCCCCCTCCTCCTCCTGTGG+AGG - chr7.1:84805327-84805346 MS.gene070651:CDS 70.0%
TCCTCCCCCTCCTCCTCCTG+TGG - chr7.1:84805324-84805343 MS.gene070651:CDS 70.0%
GAGGAGGGGGAGGGCCGCAA+TGG + chr7.1:84805021-84805040 None:intergenic 75.0%
GGAGGAGGAGGAGGAGGGGG+AGG + chr7.1:84805031-84805050 None:intergenic 75.0%
GGAGGGGGAGGAGAAGGGGG+AGG + chr7.1:84805316-84805335 None:intergenic 75.0%
GGGGGAGGAGAAGGGGGAGG+GGG + chr7.1:84805313-84805332 None:intergenic 75.0%
GGGGGAGGAGGAGGAGGAGG+AGG + chr7.1:84805064-84805083 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 84804878 84806113 84804878 ID=MS.gene070651
chr7.1 mRNA 84804878 84806113 84804878 ID=MS.gene070651.t1;Parent=MS.gene070651
chr7.1 exon 84804878 84806113 84804878 ID=MS.gene070651.t1.exon1;Parent=MS.gene070651.t1
chr7.1 CDS 84804878 84806113 84804878 ID=cds.MS.gene070651.t1;Parent=MS.gene070651.t1
Gene Sequence

>MS.gene070651

ATGACAATCAATCAATTCCCGACAGTAGTAATAGTACTACTAATTATAATAGGATCTACAGGATGGTGCTTGGCGGGTCGAGATAGGGAGGAATGTGGATTATGCTGCAGTGCATGGGATTTTTGTAGATCAATTGAAAGCCATTGCGGCCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTTCTCCTCCACCTCCTTCTCCACCTCCTCCTTCTCCTTCTCCTCCTCCCCCTTCTCCACCTCCTCCTTCTCCTCCACCTCCTTCTCCACCTCCCCCTTCTCCTCCACCTCCTTCTCCCCCTCCTCCTTCTCCTTCTCCCCCTCCTCCACCTCCTCCTTCTCCTCCACCTCCTTCTCCACCTCCCCCTTCTCCTCCACCTCCTTCTCCCCCTCCTCCTTCTCCTTCTCCCCCTCCCCCTTCTCCTCCCCCTCCTCCTCCTGTGGAGGAGTACCTCATCTCGGTAAAGGATTTCAATGAGATGCTTAAGCATCACGATGATGATCTGTGTGAGGGGAAAGGATTTTACACGTATGAAGCTTTTGTGAAAGCTGCCAAAACCTTCCCCAAGTTCGGTAATGTAGGTACTACAAATTCAAAGAAATCGGACATTGCTGCTTTCTTTAGTCAAAGTTCTCACGAAACAAGTGGTGGATCAACTGAAGGACCTTACGATTGGGGATATTGCTTTGTGAAGGAACCGTATCCGACCAGGGACTACTGCGAACCAAGCTCTGAATTCCCATGTGCTCCCGGGAAGCAATACTACGGTAGGGGTCCATTCCAGATAACTGGAAACATAGATTACGGAAGATGTGGACGTGCAATAGGTGTTGACTTGCTAAAAAATCCAGACCTTGTTGCCACTGACCCAATTATATCCTTCAAGAGTGCTTTATGGTTTTGGATGACGCCTCCGATTCAGACATCCGACGTATATATGCCGGCCTGCCATGAAGTTATGGCTGGAATATGGACTCCTTCTCATGCTGATCAACTTCAGAGAAGGTATGGAGGATACGGGATGACAACTTATGTGGTGACTTCCTCCCAAAAATTCAAAAACTGGAAATGTGGAGGTGGGTTCATGACTCCAAGCGAGATGGATCGGATTGGATTTTACAAGAGATACTGTGACATACTACTTGTTGCATATGGAAACTATGTTGAATGCTATGGCTATCGTTCTAATTCGCTTACTTTCTCTGCCTAG
Protein sequence

>MS.gene070651.t1

MTINQFPTVVIVLLIIIGSTGWCLAGRDREECGLCCSAWDFCRSIESHCGPPPPPPPPPPPPPPPPPPPSPPPPSPPPPSPSPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPSPPPPPPPSPPPPSPPPPSPPPPSPPPPSPSPPPPSPPPPPPVEEYLISVKDFNEMLKHHDDDLCEGKGFYTYEAFVKAAKTFPKFGNVGTTNSKKSDIAAFFSQSSHETSGGSTEGPYDWGYCFVKEPYPTRDYCEPSSEFPCAPGKQYYGRGPFQITGNIDYGRCGRAIGVDLLKNPDLVATDPIISFKSALWFWMTPPIQTSDVYMPACHEVMAGIWTPSHADQLQRRYGGYGMTTYVVTSSQKFKNWKCGGGFMTPSEMDRIGFYKRYCDILLVAYGNYVECYGYRSNSLTFSA