Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071032.t1 | XP_003623359.1 | 97.7 | 258 | 4 | 1 | 1 | 258 | 1 | 256 | 2.60E-137 | 498 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071032.t1 | P19975 | 84.0 | 256 | 36 | 2 | 1 | 256 | 1 | 251 | 4.7e-116 | 418.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071032.t1 | G7KT76 | 97.7 | 258 | 4 | 1 | 1 | 258 | 1 | 256 | 1.8e-137 | 498.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene071032 | MS.gene29686 | PPI |
| MS.gene76087 | MS.gene071032 | PPI |
| MS.gene071032 | MS.gene94217 | PPI |
| MS.gene071032 | MS.gene004968 | PPI |
| MS.gene071032 | MS.gene071223 | PPI |
| MS.gene07505 | MS.gene071032 | PPI |
| MS.gene86821 | MS.gene071032 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071032.t1 | MTR_7g069980 | 97.674 | 258 | 4 | 1 | 1 | 258 | 1 | 256 | 0.0 | 514 |
| MS.gene071032.t1 | MTR_4g014540 | 75.494 | 253 | 59 | 1 | 1 | 253 | 1 | 250 | 2.51e-129 | 366 |
| MS.gene071032.t1 | MTR_5g083170 | 75.124 | 201 | 50 | 0 | 57 | 257 | 48 | 248 | 1.14e-106 | 309 |
| MS.gene071032.t1 | MTR_5g083170 | 77.083 | 144 | 33 | 0 | 57 | 200 | 48 | 191 | 6.77e-74 | 224 |
| MS.gene071032.t1 | MTR_5g072560 | 69.600 | 125 | 38 | 0 | 129 | 253 | 18 | 142 | 2.86e-57 | 180 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071032.t1 | AT5G01600 | 75.122 | 205 | 51 | 0 | 49 | 253 | 51 | 255 | 1.73e-114 | 329 |
| MS.gene071032.t1 | AT2G40300 | 68.519 | 216 | 62 | 1 | 43 | 252 | 42 | 257 | 3.72e-104 | 303 |
| MS.gene071032.t1 | AT3G11050 | 71.782 | 202 | 57 | 0 | 54 | 255 | 51 | 252 | 1.00e-102 | 299 |
| MS.gene071032.t1 | AT3G56090 | 73.196 | 194 | 52 | 0 | 59 | 252 | 62 | 255 | 6.64e-100 | 292 |
| MS.gene071032.t1 | AT3G61010 | 68.000 | 50 | 16 | 0 | 100 | 149 | 369 | 418 | 1.52e-15 | 75.9 |
| MS.gene071032.t1 | AT3G61010 | 68.000 | 50 | 16 | 0 | 100 | 149 | 369 | 418 | 1.52e-15 | 75.9 |
Find 60 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATTGAACATGAATTTC+TGG | 0.146893 | 7.3:+34916851 | MS.gene071032:CDS |
| TCTAAAGTTTCATCCTTTAA+TGG | 0.172298 | 7.3:+34914565 | MS.gene071032:CDS |
| CCATGTTTGCATACTTTGAT+AGG | 0.193427 | 7.3:+34915788 | MS.gene071032:CDS |
| TATTGTTCCTCAAGTTTCTT+TGG | 0.198180 | 7.3:+34914777 | MS.gene071032:CDS |
| GAATTTGAGCATGTGGAAAA+AGG | 0.256169 | 7.3:+34916503 | MS.gene071032:CDS |
| CTTAACACCATTTCCTGAAA+TGG | 0.266815 | 7.3:-34914602 | None:intergenic |
| AATGGAATTGGCTCTGTCTT+TGG | 0.292583 | 7.3:+34916654 | MS.gene071032:CDS |
| AAGAAATGGGGTGGTGGAAC+TGG | 0.309034 | 7.3:+34914664 | MS.gene071032:CDS |
| CTCTCACCCATTTCAGGAAA+TGG | 0.309427 | 7.3:+34914595 | MS.gene071032:CDS |
| TCTGAGGGCACATTCTTGAT+AGG | 0.338948 | 7.3:-34916482 | None:intergenic |
| TGAGAGAGAAAATCCATTAA+AGG | 0.340654 | 7.3:-34914578 | None:intergenic |
| GCAGCAACGGTTCCTTTGAC+TGG | 0.348801 | 7.3:+34914703 | MS.gene071032:CDS |
| TTCATTGAACATGAATTTCT+GGG | 0.384380 | 7.3:+34916852 | MS.gene071032:CDS |
| AAAGAAACTTGAGGAACAAT+AGG | 0.385312 | 7.3:-34914775 | None:intergenic |
| TGAAAAGCTCATGAAATATC+AGG | 0.391882 | 7.3:+34915977 | MS.gene071032:CDS |
| CAGCAACGGTTCCTTTGACT+GGG | 0.392148 | 7.3:+34914704 | MS.gene071032:CDS |
| TATTGTGGCTTGCAGGTGTT+TGG | 0.400845 | 7.3:+34917394 | MS.gene071032:intron |
| TTAACACCATTTCCTGAAAT+GGG | 0.412377 | 7.3:-34914601 | None:intergenic |
| CAATGAAGCTTGTCATTTGA+GGG | 0.428895 | 7.3:-34916836 | None:intergenic |
| TTCAGGAAATGGTGTTAAGA+AGG | 0.436178 | 7.3:+34914606 | MS.gene071032:CDS |
| ACATGAATTTCTGGGCGAAC+AGG | 0.446561 | 7.3:+34916860 | MS.gene071032:CDS |
| TGTTGAAATCAGGTTCTTCA+AGG | 0.448017 | 7.3:+34915926 | MS.gene071032:intron |
| ATGTGAGAGTTGGTAAGAAA+TGG | 0.449029 | 7.3:+34914650 | MS.gene071032:CDS |
| TGGTGGAACTGGAAAGGTTA+CGG | 0.455293 | 7.3:+34914675 | MS.gene071032:CDS |
| GGTTATATTTGAACCGTTTG+AGG | 0.463497 | 7.3:+34914726 | MS.gene071032:CDS |
| TGTGAGAGTTGGTAAGAAAT+GGG | 0.467347 | 7.3:+34914651 | MS.gene071032:CDS |
| TCAATGAAGCTTGTCATTTG+AGG | 0.489748 | 7.3:-34916837 | None:intergenic |
| CATGTTTGCATACTTTGATA+GGG | 0.500774 | 7.3:+34915789 | MS.gene071032:CDS |
| TAACTTGTTTAGAACGTTCG+TGG | 0.509370 | 7.3:+34916440 | MS.gene071032:intron |
| TCTTTCTTAACCTCCTCAAA+CGG | 0.512013 | 7.3:-34914739 | None:intergenic |
| TTCCACATGCTCAAATTCTG+AGG | 0.516359 | 7.3:-34916498 | None:intergenic |
| CTGAGGGCACATTCTTGATA+GGG | 0.526116 | 7.3:-34916481 | None:intergenic |
| GTGTCTCAATTGAGAAGGGT+TGG | 0.530310 | 7.3:+34917034 | MS.gene071032:CDS |
| CCTATCAAAGTATGCAAACA+TGG | 0.532849 | 7.3:-34915788 | None:intergenic |
| TAGGGACAACGTGGCACTCA+GGG | 0.535530 | 7.3:+34915807 | MS.gene071032:CDS |
| TCAGGAAATGGTGTTAAGAA+GGG | 0.536012 | 7.3:+34914607 | MS.gene071032:CDS |
| TCATTTGAGGGTCATTGTTG+CGG | 0.538892 | 7.3:-34916824 | None:intergenic |
| ATGGGGTGGTGGAACTGGAA+AGG | 0.540294 | 7.3:+34914669 | MS.gene071032:CDS |
| AGCAACGGTTCCTTTGACTG+GGG | 0.545713 | 7.3:+34914705 | MS.gene071032:CDS |
| GTTGGTAAGAAATGGGGTGG+TGG | 0.551165 | 7.3:+34914658 | MS.gene071032:CDS |
| TCAATTGAGAAGGGTTGGAA+AGG | 0.551958 | 7.3:+34917039 | MS.gene071032:CDS |
| AGAAGGGTTGGAAAGGGTCA+TGG | 0.553158 | 7.3:+34917046 | MS.gene071032:CDS |
| TCCACATGCTCAAATTCTGA+GGG | 0.560756 | 7.3:-34916497 | None:intergenic |
| CAATTGAGAAGGGTTGGAAA+GGG | 0.565267 | 7.3:+34917040 | MS.gene071032:CDS |
| ATAGGGACAACGTGGCACTC+AGG | 0.574444 | 7.3:+34915806 | MS.gene071032:CDS |
| GGTTACGGTTTGTGCAGCAA+CGG | 0.580360 | 7.3:+34914690 | MS.gene071032:CDS |
| AGTATGTGTCTCAATTGAGA+AGG | 0.580680 | 7.3:+34917029 | MS.gene071032:CDS |
| TCAAATATAACCCCAGTCAA+AGG | 0.586646 | 7.3:-34914715 | None:intergenic |
| CAAAGTATGCAAACATGGAG+TGG | 0.606862 | 7.3:-34915783 | None:intergenic |
| TATATTTGAACCGTTTGAGG+AGG | 0.613079 | 7.3:+34914729 | MS.gene071032:CDS |
| GCCCTCAGAATTTGAGCATG+TGG | 0.613924 | 7.3:+34916496 | MS.gene071032:CDS |
| TGTCTAGCCAAAGAAACTTG+AGG | 0.618586 | 7.3:-34914784 | None:intergenic |
| TGATCAAAGACTTCTTCATG+AGG | 0.628033 | 7.3:+34917422 | MS.gene071032:CDS |
| GTATGTGTCTCAATTGAGAA+GGG | 0.632300 | 7.3:+34917030 | MS.gene071032:CDS |
| AGAGTTGGTAAGAAATGGGG+TGG | 0.643701 | 7.3:+34914655 | MS.gene071032:CDS |
| CTTGTTTAGAACGTTCGTGG+CGG | 0.665468 | 7.3:+34916443 | MS.gene071032:intron |
| AAACATGGAGTGGTACACAT+AGG | 0.675664 | 7.3:-34915773 | None:intergenic |
| GTGAGAGTTGGTAAGAAATG+GGG | 0.684258 | 7.3:+34914652 | MS.gene071032:CDS |
| AGGGACAACGTGGCACTCAG+GGG | 0.713140 | 7.3:+34915808 | MS.gene071032:CDS |
| ATACTTTGATAGGGACAACG+TGG | 0.782573 | 7.3:+34915798 | MS.gene071032:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGAATTCATATAAAATTT+TGG | + | chr7.3:34916907-34916926 | MS.gene071032:intron | 10.0% |
| !!! | TTCATTTTTTTTTTAAAACT+CGG | - | chr7.3:34915337-34915356 | None:intergenic | 10.0% |
| !! | CTAATGAAATTTATATATTG+TGG | + | chr7.3:34917379-34917398 | MS.gene071032:intron | 15.0% |
| !! | TTTATGATTCTTAAAAATGT+TGG | - | chr7.3:34916751-34916770 | None:intergenic | 15.0% |
| !!! | AGTTTTTAAAAAACTCAAAT+GGG | + | chr7.3:34915404-34915423 | MS.gene071032:intron | 15.0% |
| !!! | CTATTTTCTTAAATTACTAT+CGG | + | chr7.3:34917255-34917274 | MS.gene071032:intron | 15.0% |
| !!! | TAGTTTTTAAAAAACTCAAA+TGG | + | chr7.3:34915403-34915422 | MS.gene071032:intron | 15.0% |
| !!! | TTTTTTTATTTTGCATACAT+TGG | + | chr7.3:34915681-34915700 | MS.gene071032:intron | 15.0% |
| !! | AAATATTAGTGGTACTAATT+TGG | - | chr7.3:34915431-34915450 | None:intergenic | 20.0% |
| !! | GAAGATTTGTGAATAATAAT+AGG | + | chr7.3:34916794-34916813 | MS.gene071032:intron | 20.0% |
| !!! | ACTACAATCATTTTTCATAT+TGG | + | chr7.3:34917084-34917103 | MS.gene071032:intron | 20.0% |
| !!! | ATGTGAGATTTGAAATTTAT+TGG | + | chr7.3:34915473-34915492 | MS.gene071032:intron | 20.0% |
| !!! | TAATTCTTTTAGAAAATCAG+AGG | - | chr7.3:34915370-34915389 | None:intergenic | 20.0% |
| !!! | TGTGAGATTTGAAATTTATT+GGG | + | chr7.3:34915474-34915493 | MS.gene071032:intron | 20.0% |
| !!! | TTTTATATGTAAATTGTAGC+TGG | - | chr7.3:34915585-34915604 | None:intergenic | 20.0% |
| ! | AACCATAGTTATATCTTGAT+TGG | + | chr7.3:34915045-34915064 | MS.gene071032:intron | 25.0% |
| ! | AAGCAAAAATCAGCATAATA+CGG | - | chr7.3:34916610-34916629 | None:intergenic | 25.0% |
| ! | ATCAATTAGCATAGTTACAA+TGG | - | chr7.3:34915713-34915732 | None:intergenic | 25.0% |
| ! | GATTTGTGAATAATAATAGG+TGG | + | chr7.3:34916797-34916816 | MS.gene071032:intron | 25.0% |
| ! | TCAATTAGCATAGTTACAAT+GGG | - | chr7.3:34915712-34915731 | None:intergenic | 25.0% |
| ! | TGTTGATACAAACTTAGATT+TGG | + | chr7.3:34915537-34915556 | MS.gene071032:intron | 25.0% |
| ! | TTCATTGAACATGAATTTCT+GGG | + | chr7.3:34916852-34916871 | MS.gene071032:CDS | 25.0% |
| ! | TTCCAATCAAGATATAACTA+TGG | - | chr7.3:34915050-34915069 | None:intergenic | 25.0% |
| !! | CTATAACTTTTCTAACTATG+TGG | + | chr7.3:34914958-34914977 | MS.gene071032:intron | 25.0% |
| !! | GTTAAGTTTTACTTACTTTG+AGG | + | chr7.3:34915079-34915098 | MS.gene071032:intron | 25.0% |
| !! | TCTAAAGTTTCATCCTTTAA+TGG | + | chr7.3:34914565-34914584 | MS.gene071032:CDS | 25.0% |
| !! | TTTGGTAATATTCTTTCTTC+AGG | + | chr7.3:34916982-34917001 | MS.gene071032:intron | 25.0% |
| !!! | ACATCTTTAATTTGAAGTGT+TGG | - | chr7.3:34917165-34917184 | None:intergenic | 25.0% |
| !!! | TGTAAGGGATTCATATTTTT+TGG | + | chr7.3:34916964-34916983 | MS.gene071032:intron | 25.0% |
| !!! | TTGCTTTTATTGTTGAAATC+AGG | + | chr7.3:34915916-34915935 | MS.gene071032:intron | 25.0% |
| AAAGAAACTTGAGGAACAAT+AGG | - | chr7.3:34914778-34914797 | None:intergenic | 30.0% | |
| AATTCCATTGCTGAAACAAA+AGG | - | chr7.3:34916643-34916662 | None:intergenic | 30.0% | |
| AATTTGAGCATGTGGAAAAA+GGG | + | chr7.3:34916504-34916523 | MS.gene071032:CDS | 30.0% | |
| CATAGATCGTACTAATTGAT+AGG | - | chr7.3:34917137-34917156 | None:intergenic | 30.0% | |
| CATGTTTGCATACTTTGATA+GGG | + | chr7.3:34915789-34915808 | MS.gene071032:CDS | 30.0% | |
| CTAAGATTTAGATGGTTGAT+TGG | + | chr7.3:34914986-34915005 | MS.gene071032:intron | 30.0% | |
| CTTCATTGAACATGAATTTC+TGG | + | chr7.3:34916851-34916870 | MS.gene071032:CDS | 30.0% | |
| GAGGTAAGTAAGTTCAAATA+AGG | - | chr7.3:34916040-34916059 | None:intergenic | 30.0% | |
| TATCATGTATGTGTTGTATC+TGG | + | chr7.3:34917288-34917307 | MS.gene071032:intron | 30.0% | |
| TATTGTTCCTCAAGTTTCTT+TGG | + | chr7.3:34914777-34914796 | MS.gene071032:CDS | 30.0% | |
| TCATGAGGCAAAAATATTAG+TGG | - | chr7.3:34915442-34915461 | None:intergenic | 30.0% | |
| TGAAAAGCTCATGAAATATC+AGG | + | chr7.3:34915977-34915996 | MS.gene071032:CDS | 30.0% | |
| TGAGAGAGAAAATCCATTAA+AGG | - | chr7.3:34914581-34914600 | None:intergenic | 30.0% | |
| TTAACACCATTTCCTGAAAT+GGG | - | chr7.3:34914604-34914623 | None:intergenic | 30.0% | |
| TTTACTCATAAGAAAGCTCT+AGG | + | chr7.3:34915605-34915624 | MS.gene071032:intron | 30.0% | |
| ! | AAAGTTGCTTTAGCAATGTA+AGG | + | chr7.3:34916948-34916967 | MS.gene071032:intron | 30.0% |
| ! | AACTTTTCTAACTATGTGGT+TGG | + | chr7.3:34914962-34914981 | MS.gene071032:intron | 30.0% |
| ! | AAGTTGCTTTAGCAATGTAA+GGG | + | chr7.3:34916949-34916968 | MS.gene071032:intron | 30.0% |
| ! | ATTTATATATTGTGGCTTGC+AGG | + | chr7.3:34917387-34917406 | MS.gene071032:intron | 30.0% |
| ! | TGAGAAGATCAAGCATATTT+TGG | + | chr7.3:34914903-34914922 | MS.gene071032:intron | 30.0% |
| ! | TGTCTCACACATTATAGTTT+TGG | + | chr7.3:34916565-34916584 | MS.gene071032:intron | 30.0% |
| ! | TTTTAATCCTCCAATTTCCA+AGG | - | chr7.3:34915129-34915148 | None:intergenic | 30.0% |
| !! | ATTGATCCTATTGGATTAGT+CGG | + | chr7.3:34915296-34915315 | MS.gene071032:intron | 30.0% |
| !! | TAAGTTAGCTCTGTACTTTA+GGG | + | chr7.3:34916001-34916020 | MS.gene071032:intron | 30.0% |
| !! | TATTCCTTTTGTTTCAGCAA+TGG | + | chr7.3:34916636-34916655 | MS.gene071032:intron | 30.0% |
| !! | TTAAGTTAGCTCTGTACTTT+AGG | + | chr7.3:34916000-34916019 | MS.gene071032:intron | 30.0% |
| !! | TTTTGTTTCAGCAATGGAAT+TGG | + | chr7.3:34916642-34916661 | MS.gene071032:intron | 30.0% |
| AAAAAGCTAAAGGGACAAAG+AGG | - | chr7.3:34916724-34916743 | None:intergenic | 35.0% | |
| AATAAGCTGAAAACAACTCG+TGG | - | chr7.3:34916297-34916316 | None:intergenic | 35.0% | |
| AATGATTCCTTGGAAATTGG+AGG | + | chr7.3:34915119-34915138 | MS.gene071032:intron | 35.0% | |
| ACCAATGATTCCTTGGAAAT+TGG | + | chr7.3:34915116-34915135 | MS.gene071032:intron | 35.0% | |
| AGTATGTGTCTCAATTGAGA+AGG | + | chr7.3:34917029-34917048 | MS.gene071032:CDS | 35.0% | |
| ATATCAGACAGTTTCTGTGT+CGG | - | chr7.3:34917197-34917216 | None:intergenic | 35.0% | |
| ATTTGAGCATGTGGAAAAAG+GGG | + | chr7.3:34916505-34916524 | MS.gene071032:CDS | 35.0% | |
| CCATGTTTGCATACTTTGAT+AGG | + | chr7.3:34915788-34915807 | MS.gene071032:CDS | 35.0% | |
| CCTATCAAAGTATGCAAACA+TGG | - | chr7.3:34915791-34915810 | None:intergenic | 35.0% | |
| CTTAACACCATTTCCTGAAA+TGG | - | chr7.3:34914605-34914624 | None:intergenic | 35.0% | |
| CTTATTTCCATAAGCTCTTC+AGG | + | chr7.3:34916311-34916330 | MS.gene071032:intron | 35.0% | |
| GAATTTGAGCATGTGGAAAA+AGG | + | chr7.3:34916503-34916522 | MS.gene071032:CDS | 35.0% | |
| GGATAGATACATTTCATGCA+AGG | + | chr7.3:34915558-34915577 | MS.gene071032:intron | 35.0% | |
| GGTCTTACAAGTACTTATTG+AGG | - | chr7.3:34916059-34916078 | None:intergenic | 35.0% | |
| GGTTATATTTGAACCGTTTG+AGG | + | chr7.3:34914726-34914745 | MS.gene071032:CDS | 35.0% | |
| GTATGTGTCTCAATTGAGAA+GGG | + | chr7.3:34917030-34917049 | MS.gene071032:CDS | 35.0% | |
| GTTGGCAAGAAAAAGCTAAA+GGG | - | chr7.3:34916733-34916752 | None:intergenic | 35.0% | |
| TATATTTGAACCGTTTGAGG+AGG | + | chr7.3:34914729-34914748 | MS.gene071032:CDS | 35.0% | |
| TATGAAGCACAAACACTCAT+CGG | - | chr7.3:34916228-34916247 | None:intergenic | 35.0% | |
| TATGTGTATAGCGAAGTTTG+TGG | - | chr7.3:34917111-34917130 | None:intergenic | 35.0% | |
| TCAAATATAACCCCAGTCAA+AGG | - | chr7.3:34914718-34914737 | None:intergenic | 35.0% | |
| TCCAATTTCCAAGGAATCAT+TGG | - | chr7.3:34915120-34915139 | None:intergenic | 35.0% | |
| TCTTTCTTAACCTCCTCAAA+CGG | - | chr7.3:34914742-34914761 | None:intergenic | 35.0% | |
| TGATCAAAGACTTCTTCATG+AGG | + | chr7.3:34917422-34917441 | MS.gene071032:CDS | 35.0% | |
| TGCTGAAACAAAAGGAATAG+AGG | - | chr7.3:34916635-34916654 | None:intergenic | 35.0% | |
| TGGTTGGACTAAGATTTAGA+TGG | + | chr7.3:34914978-34914997 | MS.gene071032:intron | 35.0% | |
| TGTTGAAATCAGGTTCTTCA+AGG | + | chr7.3:34915926-34915945 | MS.gene071032:intron | 35.0% | |
| TGTTGGCAAGAAAAAGCTAA+AGG | - | chr7.3:34916734-34916753 | None:intergenic | 35.0% | |
| TTAGACTACCAATGATTCCT+TGG | + | chr7.3:34915109-34915128 | MS.gene071032:intron | 35.0% | |
| ! | CAATGAAGCTTGTCATTTGA+GGG | - | chr7.3:34916839-34916858 | None:intergenic | 35.0% |
| ! | CTTTTAGTCAAGCAAATGTC+TGG | - | chr7.3:34916374-34916393 | None:intergenic | 35.0% |
| ! | TCAATGAAGCTTGTCATTTG+AGG | - | chr7.3:34916840-34916859 | None:intergenic | 35.0% |
| ! | TCAGGAAATGGTGTTAAGAA+GGG | + | chr7.3:34914607-34914626 | MS.gene071032:CDS | 35.0% |
| ! | TCTTTTTGTGATGTGAGAGT+TGG | + | chr7.3:34914640-34914659 | MS.gene071032:CDS | 35.0% |
| ! | TTCAGGAAATGGTGTTAAGA+AGG | + | chr7.3:34914606-34914625 | MS.gene071032:CDS | 35.0% |
| !! | ATGTGAGAGTTGGTAAGAAA+TGG | + | chr7.3:34914650-34914669 | MS.gene071032:CDS | 35.0% |
| !! | TAACTTGTTTAGAACGTTCG+TGG | + | chr7.3:34916440-34916459 | MS.gene071032:intron | 35.0% |
| !! | TGTGAGAGTTGGTAAGAAAT+GGG | + | chr7.3:34914651-34914670 | MS.gene071032:CDS | 35.0% |
| AAACATGGAGTGGTACACAT+AGG | - | chr7.3:34915776-34915795 | None:intergenic | 40.0% | |
| AAACTGTCCTGAAGAGCTTA+TGG | - | chr7.3:34916321-34916340 | None:intergenic | 40.0% | |
| ACATGCAAGAGTTTCTCATG+AGG | - | chr7.3:34915457-34915476 | None:intergenic | 40.0% | |
| ATACTTTGATAGGGACAACG+TGG | + | chr7.3:34915798-34915817 | MS.gene071032:CDS | 40.0% | |
| ATGGACTTGTCCGTCAAAAT+TGG | - | chr7.3:34915226-34915245 | None:intergenic | 40.0% | |
| CAAAGTATGCAAACATGGAG+TGG | - | chr7.3:34915786-34915805 | None:intergenic | 40.0% | |
| CAAGAACCGACTAATCCAAT+AGG | - | chr7.3:34915305-34915324 | None:intergenic | 40.0% | |
| CAATTGAGAAGGGTTGGAAA+GGG | + | chr7.3:34917040-34917059 | MS.gene071032:CDS | 40.0% | |
| CTTCATAGTGCAACACTGTT+TGG | + | chr7.3:34916241-34916260 | MS.gene071032:intron | 40.0% | |
| CTTGTAAGACCTATGAAGCA+CGG | + | chr7.3:34916068-34916087 | MS.gene071032:intron | 40.0% | |
| GTATGATACTTCCTCCTATG+TGG | + | chr7.3:34917340-34917359 | MS.gene071032:intron | 40.0% | |
| GTCCGTCAAAATTGGCATTA+GGG | - | chr7.3:34915218-34915237 | None:intergenic | 40.0% | |
| GTTTCATTTGTGTGACAGTG+TGG | + | chr7.3:34915738-34915757 | MS.gene071032:intron | 40.0% | |
| TCAATTGAGAAGGGTTGGAA+AGG | + | chr7.3:34917039-34917058 | MS.gene071032:CDS | 40.0% | |
| TCATTTGAGGGTCATTGTTG+CGG | - | chr7.3:34916827-34916846 | None:intergenic | 40.0% | |
| TCCACATGCTCAAATTCTGA+GGG | - | chr7.3:34916500-34916519 | None:intergenic | 40.0% | |
| TCCGTCAAAATTGGCATTAG+GGG | - | chr7.3:34915217-34915236 | None:intergenic | 40.0% | |
| TGTCCGTCAAAATTGGCATT+AGG | - | chr7.3:34915219-34915238 | None:intergenic | 40.0% | |
| TGTCTAGCCAAAGAAACTTG+AGG | - | chr7.3:34914787-34914806 | None:intergenic | 40.0% | |
| TTCAGTGTGATCACATGTGT+CGG | + | chr7.3:34916149-34916168 | MS.gene071032:intron | 40.0% | |
| TTCCACATGCTCAAATTCTG+AGG | - | chr7.3:34916501-34916520 | None:intergenic | 40.0% | |
| ! | TCCCCTAATGCCAATTTTGA+CGG | + | chr7.3:34915213-34915232 | MS.gene071032:intron | 40.0% |
| ! | TTGCATGGTGAGTTTGTTTC+TGG | + | chr7.3:34916533-34916552 | MS.gene071032:intron | 40.0% |
| ! | TTTTCTCTCTCACCCATTTC+AGG | + | chr7.3:34914589-34914608 | MS.gene071032:CDS | 40.0% |
| !! | AATGGAATTGGCTCTGTCTT+TGG | + | chr7.3:34916654-34916673 | MS.gene071032:CDS | 40.0% |
| !! | AGCTTTGCTCTAGCTTTAAG+CGG | + | chr7.3:34915250-34915269 | MS.gene071032:intron | 40.0% |
| !! | CTATTGGATTAGTCGGTTCT+TGG | + | chr7.3:34915303-34915322 | MS.gene071032:intron | 40.0% |
| !! | GTGAGAGTTGGTAAGAAATG+GGG | + | chr7.3:34914652-34914671 | MS.gene071032:CDS | 40.0% |
| AGACCTATGAAGCACGGATA+CGG | + | chr7.3:34916074-34916093 | MS.gene071032:intron | 45.0% | |
| AGCTAGAGCAAAGCTCTGTA+TGG | - | chr7.3:34915245-34915264 | None:intergenic | 45.0% | |
| CTCTCACCCATTTCAGGAAA+TGG | + | chr7.3:34914595-34914614 | MS.gene071032:CDS | 45.0% | |
| GAAAAAGGGGATGCATTGCA+TGG | + | chr7.3:34916518-34916537 | MS.gene071032:CDS | 45.0% | |
| GTCTGATATAGACATGTGCG+TGG | + | chr7.3:34917208-34917227 | MS.gene071032:intron | 45.0% | |
| GTGTCTCAATTGAGAAGGGT+TGG | + | chr7.3:34917034-34917053 | MS.gene071032:CDS | 45.0% | |
| TGATACTTCCTCCTATGTGG+TGG | + | chr7.3:34917343-34917362 | MS.gene071032:intron | 45.0% | |
| TGGTGGAACTGGAAAGGTTA+CGG | + | chr7.3:34914675-34914694 | MS.gene071032:CDS | 45.0% | |
| ! | ACATGAATTTCTGGGCGAAC+AGG | + | chr7.3:34916860-34916879 | MS.gene071032:CDS | 45.0% |
| ! | CTGAGGGCACATTCTTGATA+GGG | - | chr7.3:34916484-34916503 | None:intergenic | 45.0% |
| ! | CTTGTTTAGAACGTTCGTGG+CGG | + | chr7.3:34916443-34916462 | MS.gene071032:intron | 45.0% |
| ! | TATTGTGGCTTGCAGGTGTT+TGG | + | chr7.3:34917394-34917413 | MS.gene071032:intron | 45.0% |
| ! | TCTGAGGGCACATTCTTGAT+AGG | - | chr7.3:34916485-34916504 | None:intergenic | 45.0% |
| !! | AGAGTTGGTAAGAAATGGGG+TGG | + | chr7.3:34914655-34914674 | MS.gene071032:CDS | 45.0% |
| !! | CTTTGCTCTAGCTTTAAGCG+GGG | + | chr7.3:34915252-34915271 | MS.gene071032:intron | 45.0% |
| !! | GCTTTGCTCTAGCTTTAAGC+GGG | + | chr7.3:34915251-34915270 | MS.gene071032:intron | 45.0% |
| !! | TAGCTCTGTACTTTAGGGTC+TGG | + | chr7.3:34916006-34916025 | MS.gene071032:intron | 45.0% |
| AGAAGGGTTGGAAAGGGTCA+TGG | + | chr7.3:34917046-34917065 | MS.gene071032:CDS | 50.0% | |
| AGCAACGGTTCCTTTGACTG+GGG | + | chr7.3:34914705-34914724 | MS.gene071032:CDS | 50.0% | |
| CAGCAACGGTTCCTTTGACT+GGG | + | chr7.3:34914704-34914723 | MS.gene071032:CDS | 50.0% | |
| GCACAAACACTCATCGGATC+AGG | - | chr7.3:34916222-34916241 | None:intergenic | 50.0% | |
| GCCCTCAGAATTTGAGCATG+TGG | + | chr7.3:34916496-34916515 | MS.gene071032:CDS | 50.0% | |
| GGCGGTGTGATTGATCCTAT+TGG | + | chr7.3:34915287-34915306 | MS.gene071032:intron | 50.0% | |
| GGTTACGGTTTGTGCAGCAA+CGG | + | chr7.3:34914690-34914709 | MS.gene071032:CDS | 50.0% | |
| GTCAGCGTTCATGTCGTGTA+CGG | - | chr7.3:34916103-34916122 | None:intergenic | 50.0% | |
| TAAGCGGGGACTCCACAAAT+GGG | + | chr7.3:34915266-34915285 | MS.gene071032:intron | 50.0% | |
| TCAATCACACCGCCCATTTG+TGG | - | chr7.3:34915281-34915300 | None:intergenic | 50.0% | |
| TGTCCGTATCCGTGCTTCAT+AGG | - | chr7.3:34916080-34916099 | None:intergenic | 50.0% | |
| TTAAGCGGGGACTCCACAAA+TGG | + | chr7.3:34915265-34915284 | MS.gene071032:intron | 50.0% | |
| ! | CTTCAGAGTGTCCACCACAT+AGG | - | chr7.3:34917357-34917376 | None:intergenic | 50.0% |
| ! | GTTGGTAAGAAATGGGGTGG+TGG | + | chr7.3:34914658-34914677 | MS.gene071032:CDS | 50.0% |
| !! | AAGAAATGGGGTGGTGGAAC+TGG | + | chr7.3:34914664-34914683 | MS.gene071032:CDS | 50.0% |
| ATAGGGACAACGTGGCACTC+AGG | + | chr7.3:34915806-34915825 | MS.gene071032:CDS | 55.0% | |
| GCAGCAACGGTTCCTTTGAC+TGG | + | chr7.3:34914703-34914722 | MS.gene071032:CDS | 55.0% | |
| TAGGGACAACGTGGCACTCA+GGG | + | chr7.3:34915807-34915826 | MS.gene071032:CDS | 55.0% | |
| ! | CAGAGTGTCCACCACATAGG+AGG | - | chr7.3:34917354-34917373 | None:intergenic | 55.0% |
| !! | ATGGGGTGGTGGAACTGGAA+AGG | + | chr7.3:34914669-34914688 | MS.gene071032:CDS | 55.0% |
| !! | CACATGTGTCGGTGTCGTGT+CGG | + | chr7.3:34916160-34916179 | MS.gene071032:intron | 55.0% |
| AGGGACAACGTGGCACTCAG+GGG | + | chr7.3:34915808-34915827 | MS.gene071032:CDS | 60.0% | |
| TCATCGGATCAGGCGTGTCC+CGG | - | chr7.3:34916212-34916231 | None:intergenic | 60.0% | |
| !! | TGTCGGTGTCGTGTCGGTGT+TGG | + | chr7.3:34916166-34916185 | MS.gene071032:intron | 60.0% |
| ACCGATGCGTGTCCGACACC+GGG | + | chr7.3:34916191-34916210 | MS.gene071032:intron | 65.0% | |
| CACCGATGCGTGTCCGACAC+CGG | + | chr7.3:34916190-34916209 | MS.gene071032:intron | 65.0% | |
| GATCAGGCGTGTCCCGGTGT+CGG | - | chr7.3:34916206-34916225 | None:intergenic | 65.0% | |
| GCGGGGACTCCACAAATGGG+CGG | + | chr7.3:34915269-34915288 | MS.gene071032:intron | 65.0% | |
| ! | TCCCGGTGTCGGACACGCAT+CGG | - | chr7.3:34916195-34916214 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 34914550 | 34917458 | 34914550 | ID=MS.gene071032 |
| chr7.3 | mRNA | 34914550 | 34917458 | 34914550 | ID=MS.gene071032.t1;Parent=MS.gene071032 |
| chr7.3 | exon | 34914550 | 34914851 | 34914550 | ID=MS.gene071032.t1.exon1;Parent=MS.gene071032.t1 |
| chr7.3 | CDS | 34914550 | 34914851 | 34914550 | ID=cds.MS.gene071032.t1;Parent=MS.gene071032.t1 |
| chr7.3 | exon | 34915756 | 34915839 | 34915756 | ID=MS.gene071032.t1.exon2;Parent=MS.gene071032.t1 |
| chr7.3 | CDS | 34915756 | 34915839 | 34915756 | ID=cds.MS.gene071032.t1;Parent=MS.gene071032.t1 |
| chr7.3 | exon | 34915938 | 34915998 | 34915938 | ID=MS.gene071032.t1.exon3;Parent=MS.gene071032.t1 |
| chr7.3 | CDS | 34915938 | 34915998 | 34915938 | ID=cds.MS.gene071032.t1;Parent=MS.gene071032.t1 |
| chr7.3 | exon | 34916452 | 34916539 | 34916452 | ID=MS.gene071032.t1.exon4;Parent=MS.gene071032.t1 |
| chr7.3 | CDS | 34916452 | 34916539 | 34916452 | ID=cds.MS.gene071032.t1;Parent=MS.gene071032.t1 |
| chr7.3 | exon | 34916653 | 34916714 | 34916653 | ID=MS.gene071032.t1.exon5;Parent=MS.gene071032.t1 |
| chr7.3 | CDS | 34916653 | 34916714 | 34916653 | ID=cds.MS.gene071032.t1;Parent=MS.gene071032.t1 |
| chr7.3 | exon | 34916816 | 34916881 | 34916816 | ID=MS.gene071032.t1.exon6;Parent=MS.gene071032.t1 |
| chr7.3 | CDS | 34916816 | 34916881 | 34916816 | ID=cds.MS.gene071032.t1;Parent=MS.gene071032.t1 |
| chr7.3 | exon | 34917004 | 34917067 | 34917004 | ID=MS.gene071032.t1.exon7;Parent=MS.gene071032.t1 |
| chr7.3 | CDS | 34917004 | 34917067 | 34917004 | ID=cds.MS.gene071032.t1;Parent=MS.gene071032.t1 |
| chr7.3 | exon | 34917409 | 34917458 | 34917409 | ID=MS.gene071032.t1.exon8;Parent=MS.gene071032.t1 |
| chr7.3 | CDS | 34917409 | 34917458 | 34917409 | ID=cds.MS.gene071032.t1;Parent=MS.gene071032.t1 |
| Gene Sequence |
| Protein sequence |
