Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76087.t1 | XP_003616685.1 | 98.4 | 249 | 4 | 0 | 1 | 249 | 1 | 249 | 1.50E-131 | 478.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76087.t1 | Q41709 | 78.9 | 247 | 48 | 2 | 1 | 245 | 1 | 245 | 8.9e-104 | 377.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76087.t1 | G7K283 | 98.4 | 249 | 4 | 0 | 1 | 249 | 1 | 249 | 1.1e-131 | 478.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene76087 | 0.819117 | 1.37E-52 | -1.69E-46 |
| MS.gene050426 | MS.gene76087 | -0.818636 | 1.77E-52 | -1.69E-46 |
| MS.gene050642 | MS.gene76087 | 0.804156 | 2.47E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene76087 | 0.813541 | 2.43E-51 | -1.69E-46 |
| MS.gene052469 | MS.gene76087 | 0.820675 | 6.05E-53 | -1.69E-46 |
| MS.gene053330 | MS.gene76087 | 0.814262 | 1.68E-51 | -1.69E-46 |
| MS.gene054809 | MS.gene76087 | -0.802526 | 5.38E-49 | -1.69E-46 |
| MS.gene05553 | MS.gene76087 | 0.816051 | 6.75E-52 | -1.69E-46 |
| MS.gene05556 | MS.gene76087 | 0.805506 | 1.29E-49 | -1.69E-46 |
| MS.gene056087 | MS.gene76087 | 0.800952 | 1.13E-48 | -1.69E-46 |
| MS.gene056305 | MS.gene76087 | 0.817994 | 2.47E-52 | -1.69E-46 |
| MS.gene056979 | MS.gene76087 | 0.801142 | 1.04E-48 | -1.69E-46 |
| MS.gene058142 | MS.gene76087 | 0.811767 | 5.94E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene76087 | MS.gene33707 | PPI |
| MS.gene76087 | MS.gene071032 | PPI |
| MS.gene93375 | MS.gene76087 | PPI |
| MS.gene76087 | MS.gene33454 | PPI |
| MS.gene95674 | MS.gene76087 | PPI |
| MS.gene76087 | MS.gene99504 | PPI |
| MS.gene76087 | MS.gene069003 | PPI |
| MS.gene76087 | MS.gene052792 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76087.t1 | MTR_5g083170 | 98.394 | 249 | 4 | 0 | 1 | 249 | 1 | 249 | 0.0 | 503 |
| MS.gene76087.t1 | MTR_5g083170 | 97.906 | 191 | 4 | 0 | 1 | 191 | 1 | 191 | 1.27e-137 | 385 |
| MS.gene76087.t1 | MTR_7g069980 | 75.622 | 201 | 49 | 0 | 48 | 248 | 55 | 255 | 5.63e-107 | 310 |
| MS.gene76087.t1 | MTR_4g014540 | 77.157 | 197 | 45 | 0 | 48 | 244 | 54 | 250 | 2.73e-106 | 308 |
| MS.gene76087.t1 | MTR_5g072560 | 73.077 | 130 | 35 | 0 | 120 | 249 | 18 | 147 | 1.42e-66 | 203 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76087.t1 | AT3G11050 | 72.581 | 248 | 57 | 4 | 2 | 245 | 11 | 251 | 3.50e-124 | 353 |
| MS.gene76087.t1 | AT2G40300 | 80.583 | 206 | 39 | 1 | 38 | 243 | 53 | 257 | 8.42e-118 | 337 |
| MS.gene76087.t1 | AT5G01600 | 65.863 | 249 | 69 | 2 | 12 | 244 | 7 | 255 | 1.70e-114 | 328 |
| MS.gene76087.t1 | AT3G56090 | 79.798 | 198 | 40 | 0 | 50 | 247 | 62 | 259 | 7.83e-112 | 322 |
| MS.gene76087.t1 | AT3G61010 | 74.000 | 50 | 13 | 0 | 91 | 140 | 369 | 418 | 7.16e-18 | 82.4 |
| MS.gene76087.t1 | AT3G61010 | 74.000 | 50 | 13 | 0 | 91 | 140 | 369 | 418 | 7.16e-18 | 82.4 |
Find 35 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACTTGATTTGTTCATTAA+TGG | 0.196228 | 5.2:+71203647 | None:intergenic |
| GCTTCAACGTGGAAGTAAAT+TGG | 0.267790 | 5.2:-71203832 | MS.gene76087:CDS |
| AAAGACCGGTGATGTGAATT+TGG | 0.292838 | 5.2:-71201437 | MS.gene76087:CDS |
| TTGATGTAATTTCAGGTGTC+TGG | 0.348601 | 5.2:-71201085 | MS.gene76087:intron |
| GTGCAAAGCGTCACCCTTAT+CGG | 0.353274 | 5.2:+71202554 | None:intergenic |
| TGAGAAATTGATGGAATATC+AGG | 0.354314 | 5.2:-71203272 | MS.gene76087:intron |
| GTCTTACATTGTGCAGGTTA+AGG | 0.377061 | 5.2:+71201587 | None:intergenic |
| AAAGAATCTTGAGGAACAAT+AGG | 0.383929 | 5.2:+71203705 | None:intergenic |
| TGTGAATTTGGCAGACTTTG+TGG | 0.418668 | 5.2:-71201425 | MS.gene76087:CDS |
| TGAGTTTGATCATGCCGATA+AGG | 0.436295 | 5.2:-71202568 | MS.gene76087:CDS |
| GAGTTTGATCATGCCGATAA+GGG | 0.461004 | 5.2:-71202567 | MS.gene76087:CDS |
| CCACAGGTTGCCTCAAAGAC+CGG | 0.468429 | 5.2:-71201451 | MS.gene76087:intron |
| ATTCACATCACCGGTCTTTG+AGG | 0.489139 | 5.2:+71201441 | None:intergenic |
| AGGGCATGCTGAGAAATTGA+TGG | 0.491044 | 5.2:-71203281 | MS.gene76087:CDS |
| AATGGAACTTGCATTGTCCT+TGG | 0.503326 | 5.2:-71201632 | MS.gene76087:CDS |
| AAACATGTCTTACATTGTGC+AGG | 0.531800 | 5.2:+71201581 | None:intergenic |
| TACAGCAGCTTTGAGAAGCA+TGG | 0.535205 | 5.2:+71203905 | None:intergenic |
| CTCATTTGTTAGCTTCTCCA+AGG | 0.537044 | 5.2:+71201615 | None:intergenic |
| TCGTAGCAGAAACAGCGATT+CGG | 0.538135 | 5.2:+71203808 | None:intergenic |
| AGAGATAATGTTGCGCTGAA+AGG | 0.541910 | 5.2:-71203462 | MS.gene76087:CDS |
| GTCTGCCAAATTCACATCAC+CGG | 0.543362 | 5.2:+71201432 | None:intergenic |
| TTACTTCCACGTTGAAGCAA+CGG | 0.548255 | 5.2:+71203837 | None:intergenic |
| ATCGCTGTTTCTGCTACGAA+AGG | 0.563174 | 5.2:-71203804 | MS.gene76087:CDS |
| GTTGCTCAGCTAAGAAGAGT+TGG | 0.565145 | 5.2:-71201217 | MS.gene76087:CDS |
| AGAAGAGTTGGCAAAGGACA+TGG | 0.569821 | 5.2:-71201205 | MS.gene76087:intron |
| GAATCTAGTGAAGAGGAAAG+AGG | 0.571340 | 5.2:-71203301 | MS.gene76087:CDS |
| GATAAGGGTGACGCTTTGCA+CGG | 0.580509 | 5.2:-71202552 | MS.gene76087:intron |
| AATCTAGTGAAGAGGAAAGA+GGG | 0.584769 | 5.2:-71203300 | MS.gene76087:CDS |
| TGACGAGCTAAAGAATCTTG+AGG | 0.605682 | 5.2:+71203696 | None:intergenic |
| TCTTAGCTGAGCAACATACT+CGG | 0.619174 | 5.2:+71201225 | None:intergenic |
| ACAAAACACCGGTTAAAACA+CGG | 0.624694 | 5.2:+71203769 | None:intergenic |
| AAAAGGTTCAAACAAAACAC+CGG | 0.645626 | 5.2:+71203758 | None:intergenic |
| CAGCTAAGAAGAGTTGGCAA+AGG | 0.650592 | 5.2:-71201211 | MS.gene76087:CDS |
| TTGATTCCGTTGCTTCAACG+TGG | 0.658320 | 5.2:-71203843 | MS.gene76087:CDS |
| GCATGATCAAACTCAGAGAG+CGG | 0.671716 | 5.2:+71202576 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTACTTTACAAAATATTT+CGG | + | chr5.2:71203093-71203112 | None:intergenic | 10.0% |
| !!! | AATTTGACTATTTTTTAAAT+CGG | - | chr5.2:71201745-71201764 | MS.gene76087:intron | 10.0% |
| !!! | TGTTTTAATTTATTTTGTTT+TGG | - | chr5.2:71201527-71201546 | MS.gene76087:intron | 10.0% |
| !! | ATAGTCAAATTTCATTAAAT+TGG | + | chr5.2:71201736-71201755 | None:intergenic | 15.0% |
| !! | TAGTCAAATTTCATTAAATT+GGG | + | chr5.2:71201735-71201754 | None:intergenic | 15.0% |
| !! | TATATTACTCTAACAAAAAA+TGG | - | chr5.2:71201941-71201960 | MS.gene76087:intron | 15.0% |
| !!! | ATCATTATTTTTCTATTCAT+AGG | - | chr5.2:71203677-71203696 | MS.gene76087:CDS | 15.0% |
| !!! | GTTTTATTTTTAGAACAAAA+GGG | - | chr5.2:71202315-71202334 | MS.gene76087:intron | 15.0% |
| !!! | TGTTTTATTTTTAGAACAAA+AGG | - | chr5.2:71202314-71202333 | MS.gene76087:intron | 15.0% |
| !!! | TTTTATTTTTAGAACAAAAG+GGG | - | chr5.2:71202316-71202335 | MS.gene76087:intron | 15.0% |
| !!! | TTTTGTTTATAGGTTTTTTA+AGG | - | chr5.2:71201623-71201642 | MS.gene76087:CDS | 15.0% |
| !!! | TTTTGTTTTGGTTTTAATTT+TGG | - | chr5.2:71201539-71201558 | MS.gene76087:intron | 15.0% |
| !! | AAGATAATTGATGAATTTGT+GGG | - | chr5.2:71202584-71202603 | MS.gene76087:CDS | 20.0% |
| !! | CCCTTAAACTAAAAATAAAA+CGG | + | chr5.2:71203606-71203625 | None:intergenic | 20.0% |
| !! | CTAAAAATAAAACGGAAATA+TGG | + | chr5.2:71203598-71203617 | None:intergenic | 20.0% |
| !! | GGTATATAATAAATCACAAA+AGG | - | chr5.2:71201993-71202012 | MS.gene76087:intron | 20.0% |
| !! | TTTATTATATACCGTTGTTA+TGG | + | chr5.2:71201986-71202005 | None:intergenic | 20.0% |
| !!! | ATTATTTTTCTATTCATAGG+TGG | - | chr5.2:71203680-71203699 | MS.gene76087:CDS | 20.0% |
| !!! | CCGTTTTATTTTTAGTTTAA+GGG | - | chr5.2:71203603-71203622 | MS.gene76087:intron | 20.0% |
| !!! | GATTATGTTGTTTTGTTTAT+AGG | - | chr5.2:71201613-71201632 | MS.gene76087:CDS | 20.0% |
| !!! | TCCGTTTTATTTTTAGTTTA+AGG | - | chr5.2:71203602-71203621 | MS.gene76087:intron | 20.0% |
| !!! | TTTTAAAGTGTTAACTTATG+TGG | - | chr5.2:71203833-71203852 | MS.gene76087:CDS | 20.0% |
| ! | AGTGTTAGATAATAGGTTAT+TGG | + | chr5.2:71202061-71202080 | None:intergenic | 25.0% |
| ! | AGTTAGAAAAATAATGTGCA+TGG | + | chr5.2:71203787-71203806 | None:intergenic | 25.0% |
| ! | CTACAAAACTAGTAATTAGA+GGG | + | chr5.2:71203155-71203174 | None:intergenic | 25.0% |
| ! | CTTAATGATTACAAGAAACA+TGG | + | chr5.2:71203054-71203073 | None:intergenic | 25.0% |
| ! | GAAGATAATTGATGAATTTG+TGG | - | chr5.2:71202583-71202602 | MS.gene76087:CDS | 25.0% |
| ! | GTGTTAGATAATAGGTTATT+GGG | + | chr5.2:71202060-71202079 | None:intergenic | 25.0% |
| ! | TACAAAACTAGTAATTAGAG+GGG | + | chr5.2:71203154-71203173 | None:intergenic | 25.0% |
| ! | TACAATTATGATATACCCAA+AGG | - | chr5.2:71202943-71202962 | MS.gene76087:intron | 25.0% |
| ! | TACTAACTTAGAAACATAAG+TGG | - | chr5.2:71202020-71202039 | MS.gene76087:intron | 25.0% |
| ! | TAGATCATTTGTTCTGTAAT+TGG | - | chr5.2:71202436-71202455 | MS.gene76087:intron | 25.0% |
| ! | TCAATAGAATACCATAACAA+CGG | - | chr5.2:71201972-71201991 | MS.gene76087:intron | 25.0% |
| ! | TCTACAAAACTAGTAATTAG+AGG | + | chr5.2:71203156-71203175 | None:intergenic | 25.0% |
| ! | TGGGTATATCATAATTGTAT+TGG | + | chr5.2:71202942-71202961 | None:intergenic | 25.0% |
| ! | TTGTCGAAACTATAAAACTA+AGG | + | chr5.2:71202903-71202922 | None:intergenic | 25.0% |
| !! | CATAAATGTAATCTGAAATC+TGG | + | chr5.2:71203121-71203140 | None:intergenic | 25.0% |
| !!! | ACCTTTTGAAGAAGTTAAAA+AGG | - | chr5.2:71201204-71201223 | MS.gene76087:intron | 25.0% |
| !!! | ACTTATTTTTGTTGCCTTAT+TGG | - | chr5.2:71202254-71202273 | MS.gene76087:intron | 25.0% |
| !!! | ATACTCGGATATTTTTTTGA+TGG | + | chr5.2:71203709-71203728 | None:intergenic | 25.0% |
| !!! | ATTTTTGTTGTTGTTGTTGT+TGG | - | chr5.2:71201399-71201418 | MS.gene76087:intron | 25.0% |
| !!! | GAACTTGATTTGTTCATTAA+TGG | + | chr5.2:71201302-71201321 | None:intergenic | 25.0% |
| !!! | TCCTTTTTAACTTCTTCAAA+AGG | + | chr5.2:71201208-71201227 | None:intergenic | 25.0% |
| AAAAGGTTCAAACAAAACAC+CGG | + | chr5.2:71201191-71201210 | None:intergenic | 30.0% | |
| AAAGAATCTTGAGGAACAAT+AGG | + | chr5.2:71201244-71201263 | None:intergenic | 30.0% | |
| AAATTCGACGACTTTCTAAT+CGG | + | chr5.2:71202191-71202210 | None:intergenic | 30.0% | |
| AAGAAACATGGTCACAATTA+AGG | + | chr5.2:71203042-71203061 | None:intergenic | 30.0% | |
| ACAAAACTAGTAATTAGAGG+GGG | + | chr5.2:71203153-71203172 | None:intergenic | 30.0% | |
| ACGTTTCCTTAGATTACTAT+TGG | + | chr5.2:71201837-71201856 | None:intergenic | 30.0% | |
| AGAAACATGGTCACAATTAA+GGG | + | chr5.2:71203041-71203060 | None:intergenic | 30.0% | |
| ATGGTATTCTATTGAAACAC+TGG | + | chr5.2:71201967-71201986 | None:intergenic | 30.0% | |
| ATTATGATATACCCAAAGGA+AGG | - | chr5.2:71202947-71202966 | MS.gene76087:intron | 30.0% | |
| CATACGTAAAGTTAAGAGAA+AGG | + | chr5.2:71203470-71203489 | None:intergenic | 30.0% | |
| CCTATTATCTAACACTTCAA+AGG | - | chr5.2:71202065-71202084 | MS.gene76087:intron | 30.0% | |
| CTTTGGTTACTAGATCAATA+AGG | - | chr5.2:71202125-71202144 | MS.gene76087:intron | 30.0% | |
| GATTGAACTGAATCAAAAAG+TGG | - | chr5.2:71202675-71202694 | MS.gene76087:intron | 30.0% | |
| TCACAAGATAACTACCAATA+AGG | + | chr5.2:71202271-71202290 | None:intergenic | 30.0% | |
| TCACAATTCAGACTCAATTA+AGG | + | chr5.2:71202497-71202516 | None:intergenic | 30.0% | |
| TCTTATCTTTATTGCAGCAA+TGG | - | chr5.2:71203296-71203315 | MS.gene76087:CDS | 30.0% | |
| TGAGAAATTGATGGAATATC+AGG | - | chr5.2:71201674-71201693 | MS.gene76087:intron | 30.0% | |
| TTATGATATACCCAAAGGAA+GGG | - | chr5.2:71202948-71202967 | MS.gene76087:intron | 30.0% | |
| TTGACACCAATAGTAATCTA+AGG | - | chr5.2:71201828-71201847 | MS.gene76087:intron | 30.0% | |
| ! | TGTTAATCAACTGTTAGCTT+TGG | - | chr5.2:71202108-71202127 | MS.gene76087:intron | 30.0% |
| !! | AAGACATGTTTGTTGAGTTT+TGG | - | chr5.2:71203377-71203396 | MS.gene76087:intron | 30.0% |
| !! | CCTTTGAAGTGTTAGATAAT+AGG | + | chr5.2:71202068-71202087 | None:intergenic | 30.0% |
| !! | GTTAACACTTTAAAATGCAG+AGG | + | chr5.2:71203828-71203847 | None:intergenic | 30.0% |
| !! | TTTTAAGGAATCTAGTGAAG+AGG | - | chr5.2:71201638-71201657 | MS.gene76087:intron | 30.0% |
| !!! | AACAATAACCGTGTTTTAAC+CGG | - | chr5.2:71201169-71201188 | MS.gene76087:intron | 30.0% |
| !!! | TATTTTTAGAACAAAAGGGG+TGG | - | chr5.2:71202319-71202338 | MS.gene76087:intron | 30.0% |
| AAACATGTCTTACATTGTGC+AGG | + | chr5.2:71203368-71203387 | None:intergenic | 35.0% | |
| AACACTTCAAAGGTTAACAC+AGG | - | chr5.2:71202075-71202094 | MS.gene76087:intron | 35.0% | |
| AACAGGGAATCACGATATTA+AGG | + | chr5.2:71202995-71203014 | None:intergenic | 35.0% | |
| AATCATTAAGATGTTTGCCC+TGG | - | chr5.2:71203064-71203083 | MS.gene76087:intron | 35.0% | |
| AATCTAGTGAAGAGGAAAGA+GGG | - | chr5.2:71201646-71201665 | MS.gene76087:intron | 35.0% | |
| AATGATAAATCCCCTTCCTT+TGG | + | chr5.2:71202962-71202981 | None:intergenic | 35.0% | |
| AATTCAGACTCAATTAAGGC+AGG | + | chr5.2:71202493-71202512 | None:intergenic | 35.0% | |
| AATTGATGAATTTGTGGGCT+TGG | - | chr5.2:71202589-71202608 | MS.gene76087:CDS | 35.0% | |
| ACAAAATATTTCGGATGCCA+GGG | + | chr5.2:71203084-71203103 | None:intergenic | 35.0% | |
| AGACACCTGAAATTACATCA+AGG | + | chr5.2:71203862-71203881 | None:intergenic | 35.0% | |
| ATGATAAATCCCCTTCCTTT+GGG | + | chr5.2:71202961-71202980 | None:intergenic | 35.0% | |
| GAAAATCCAATCATCCAATC+AGG | + | chr5.2:71203256-71203275 | None:intergenic | 35.0% | |
| GGAAGGGGATTTATCATTTA+TGG | - | chr5.2:71202964-71202983 | MS.gene76087:intron | 35.0% | |
| TAATATCGTGATTCCCTGTT+TGG | - | chr5.2:71202995-71203014 | MS.gene76087:intron | 35.0% | |
| TAATTAATGCCCATGAAGCA+CGG | - | chr5.2:71201768-71201787 | MS.gene76087:intron | 35.0% | |
| TACAAAATATTTCGGATGCC+AGG | + | chr5.2:71203085-71203104 | None:intergenic | 35.0% | |
| TATGACACAGAAACCAAACT+GGG | - | chr5.2:71202832-71202851 | MS.gene76087:intron | 35.0% | |
| TATGATATACCCAAAGGAAG+GGG | - | chr5.2:71202949-71202968 | MS.gene76087:intron | 35.0% | |
| ! | ACAAAACACCGGTTAAAACA+CGG | + | chr5.2:71201180-71201199 | None:intergenic | 35.0% |
| ! | CTTTACGTATGTTTTTCCAC+AGG | - | chr5.2:71203479-71203498 | MS.gene76087:CDS | 35.0% |
| ! | TGTGATGTGTGTGGATTTTA+TGG | - | chr5.2:71202512-71202531 | MS.gene76087:intron | 35.0% |
| ! | TTGATGTAATTTCAGGTGTC+TGG | - | chr5.2:71203861-71203880 | MS.gene76087:CDS | 35.0% |
| ! | TTTGTGGAAAGCGAGTTTTT+GGG | - | chr5.2:71203537-71203556 | MS.gene76087:intron | 35.0% |
| !! | ATCATTACTGATTCCCAGTT+TGG | + | chr5.2:71202848-71202867 | None:intergenic | 35.0% |
| !! | TACTATTGGTGTCAATGTGT+CGG | + | chr5.2:71201823-71201842 | None:intergenic | 35.0% |
| !! | TTTCATCAAGTTGAGATTGC+TGG | - | chr5.2:71202799-71202818 | MS.gene76087:intron | 35.0% |
| !! | TTTTTCAGATCACGCTTTCT+TGG | + | chr5.2:71202720-71202739 | None:intergenic | 35.0% |
| !!! | GCACGGTTAGTTTCTTTTTT+TGG | - | chr5.2:71202411-71202430 | MS.gene76087:intron | 35.0% |
| AAAGACCGGTGATGTGAATT+TGG | - | chr5.2:71203509-71203528 | MS.gene76087:CDS | 40.0% | |
| AATGGAACTTGCATTGTCCT+TGG | - | chr5.2:71203314-71203333 | MS.gene76087:CDS | 40.0% | |
| ACATGGTCACAATTAAGGGA+TGG | + | chr5.2:71203037-71203056 | None:intergenic | 40.0% | |
| AGAGATAATGTTGCGCTGAA+AGG | - | chr5.2:71201484-71201503 | MS.gene76087:intron | 40.0% | |
| AGTCTGAATTGTGATGTGTG+TGG | - | chr5.2:71202503-71202522 | MS.gene76087:intron | 40.0% | |
| CTATGACACAGAAACCAAAC+TGG | - | chr5.2:71202831-71202850 | MS.gene76087:intron | 40.0% | |
| CTGGTATCCAATTCCAAACA+GGG | + | chr5.2:71203011-71203030 | None:intergenic | 40.0% | |
| GAATCTAGTGAAGAGGAAAG+AGG | - | chr5.2:71201645-71201664 | MS.gene76087:intron | 40.0% | |
| GAGTTTGATCATGCCGATAA+GGG | - | chr5.2:71202379-71202398 | MS.gene76087:intron | 40.0% | |
| GCAATGAGTAACACAAGATG+TGG | - | chr5.2:71203214-71203233 | MS.gene76087:intron | 40.0% | |
| GCTTCAACGTGGAAGTAAAT+TGG | - | chr5.2:71201114-71201133 | MS.gene76087:intron | 40.0% | |
| GGCTTCCTTGATGTAATTTC+AGG | - | chr5.2:71203854-71203873 | MS.gene76087:CDS | 40.0% | |
| GTACTACCTGATTGGATGAT+TGG | - | chr5.2:71203247-71203266 | MS.gene76087:intron | 40.0% | |
| GTCACATTGTACTACCTGAT+TGG | - | chr5.2:71203239-71203258 | MS.gene76087:intron | 40.0% | |
| GTCTTACATTGTGCAGGTTA+AGG | + | chr5.2:71203362-71203381 | None:intergenic | 40.0% | |
| GTTAATGCAGTTCGTACACA+TGG | + | chr5.2:71202169-71202188 | None:intergenic | 40.0% | |
| TCTTAGCTGAGCAACATACT+CGG | + | chr5.2:71203724-71203743 | None:intergenic | 40.0% | |
| TGACGAGCTAAAGAATCTTG+AGG | + | chr5.2:71201253-71201272 | None:intergenic | 40.0% | |
| TGAGTTTGATCATGCCGATA+AGG | - | chr5.2:71202378-71202397 | MS.gene76087:intron | 40.0% | |
| TGTGAATTTGGCAGACTTTG+TGG | - | chr5.2:71203521-71203540 | MS.gene76087:intron | 40.0% | |
| TTACTTCCACGTTGAAGCAA+CGG | + | chr5.2:71201112-71201131 | None:intergenic | 40.0% | |
| ! | CTCATTTGTTAGCTTCTCCA+AGG | + | chr5.2:71203334-71203353 | None:intergenic | 40.0% |
| ! | CTTTGTGGAAAGCGAGTTTT+TGG | - | chr5.2:71203536-71203555 | MS.gene76087:intron | 40.0% |
| !! | TTTCATCAAGTTGAGCTTGC+TGG | - | chr5.2:71202770-71202789 | MS.gene76087:intron | 40.0% |
| !!! | AGTTTTGGTGTCTGGTTTAC+GGG | - | chr5.2:71203392-71203411 | MS.gene76087:intron | 40.0% |
| !!! | GAGTTTTGGTGTCTGGTTTA+CGG | - | chr5.2:71203391-71203410 | MS.gene76087:intron | 40.0% |
| !!! | GTTTGTTGAGTTTTGGTGTC+TGG | - | chr5.2:71203384-71203403 | MS.gene76087:intron | 40.0% |
| AAACTCTGACACTTGGACAC+AGG | - | chr5.2:71201860-71201879 | MS.gene76087:intron | 45.0% | |
| ACGTCGTAAACTCTGACACT+TGG | - | chr5.2:71201853-71201872 | MS.gene76087:intron | 45.0% | |
| AGAAGAGTTGGCAAAGGACA+TGG | - | chr5.2:71203741-71203760 | MS.gene76087:CDS | 45.0% | |
| AGGGCATGCTGAGAAATTGA+TGG | - | chr5.2:71201665-71201684 | MS.gene76087:intron | 45.0% | |
| ATGAAGCACGGACACATACA+CGG | - | chr5.2:71201780-71201799 | MS.gene76087:intron | 45.0% | |
| ATTCACATCACCGGTCTTTG+AGG | + | chr5.2:71203508-71203527 | None:intergenic | 45.0% | |
| CAGCTAAGAAGAGTTGGCAA+AGG | - | chr5.2:71203735-71203754 | MS.gene76087:CDS | 45.0% | |
| CCTGGTATCCAATTCCAAAC+AGG | + | chr5.2:71203012-71203031 | None:intergenic | 45.0% | |
| GCATGATCAAACTCAGAGAG+CGG | + | chr5.2:71202373-71202392 | None:intergenic | 45.0% | |
| GGTTATTGGGCTTGTGCTAT+TGG | + | chr5.2:71202047-71202066 | None:intergenic | 45.0% | |
| GTCTGCCAAATTCACATCAC+CGG | + | chr5.2:71203517-71203536 | None:intergenic | 45.0% | |
| GTTGCTCAGCTAAGAAGAGT+TGG | - | chr5.2:71203729-71203748 | MS.gene76087:CDS | 45.0% | |
| TCGTAGCAGAAACAGCGATT+CGG | + | chr5.2:71201141-71201160 | None:intergenic | 45.0% | |
| TGTATGTGTCCGTGCTTCAT+GGG | + | chr5.2:71201780-71201799 | None:intergenic | 45.0% | |
| TTGATTCCGTTGCTTCAACG+TGG | - | chr5.2:71201103-71201122 | MS.gene76087:intron | 45.0% | |
| ! | CCTGTTTGGAATTGGATACC+AGG | - | chr5.2:71203009-71203028 | MS.gene76087:intron | 45.0% |
| ! | CGGAATCAAACGCGTGTTTT+CGG | + | chr5.2:71201092-71201111 | None:intergenic | 45.0% |
| ! | CGTGATTCCCTGTTTGGAAT+TGG | - | chr5.2:71203001-71203020 | MS.gene76087:intron | 45.0% |
| !! | ATCGCTGTTTCTGCTACGAA+AGG | - | chr5.2:71201142-71201161 | MS.gene76087:intron | 45.0% |
| !! | GTTGTTGGTGTTGAACAGTG+TGG | - | chr5.2:71201414-71201433 | MS.gene76087:CDS | 45.0% |
| !!! | AAGCGAGTTTTTGGGTGAAC+AGG | - | chr5.2:71203545-71203564 | MS.gene76087:intron | 45.0% |
| !!! | TTGATTTATTTAATTAATTT+TGG | - | chr5.2:71201376-71201395 | MS.gene76087:intron | 5.0% |
| CACAATTAAGGGATGGTGCC+TGG | + | chr5.2:71203030-71203049 | None:intergenic | 50.0% | |
| GATAAGGGTGACGCTTTGCA+CGG | - | chr5.2:71202394-71202413 | MS.gene76087:intron | 50.0% | |
| GTGTATGTGTCCGTGCTTCA+TGG | + | chr5.2:71201781-71201800 | None:intergenic | 50.0% | |
| ! | GTGCAAAGCGTCACCCTTAT+CGG | + | chr5.2:71202395-71202414 | None:intergenic | 50.0% |
| CCACAGGTTGCCTCAAAGAC+CGG | - | chr5.2:71203495-71203514 | MS.gene76087:CDS | 55.0% | |
| !! | CCGGTCTTTGAGGCAACCTG+TGG | + | chr5.2:71203498-71203517 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 71201043 | 71203925 | 71201043 | ID=MS.gene76087 |
| chr5.2 | mRNA | 71201043 | 71203925 | 71201043 | ID=MS.gene76087.t1;Parent=MS.gene76087 |
| chr5.2 | exon | 71203651 | 71203925 | 71203651 | ID=MS.gene76087.t1.exon1;Parent=MS.gene76087.t1 |
| chr5.2 | CDS | 71203651 | 71203925 | 71203651 | ID=cds.MS.gene76087.t1;Parent=MS.gene76087.t1 |
| chr5.2 | exon | 71203453 | 71203536 | 71203453 | ID=MS.gene76087.t1.exon2;Parent=MS.gene76087.t1 |
| chr5.2 | CDS | 71203453 | 71203536 | 71203453 | ID=cds.MS.gene76087.t1;Parent=MS.gene76087.t1 |
| chr5.2 | exon | 71203273 | 71203333 | 71203273 | ID=MS.gene76087.t1.exon3;Parent=MS.gene76087.t1 |
| chr5.2 | CDS | 71203273 | 71203333 | 71203273 | ID=cds.MS.gene76087.t1;Parent=MS.gene76087.t1 |
| chr5.2 | exon | 71202553 | 71202640 | 71202553 | ID=MS.gene76087.t1.exon4;Parent=MS.gene76087.t1 |
| chr5.2 | CDS | 71202553 | 71202640 | 71202553 | ID=cds.MS.gene76087.t1;Parent=MS.gene76087.t1 |
| chr5.2 | exon | 71201594 | 71201655 | 71201594 | ID=MS.gene76087.t1.exon5;Parent=MS.gene76087.t1 |
| chr5.2 | CDS | 71201594 | 71201655 | 71201594 | ID=cds.MS.gene76087.t1;Parent=MS.gene76087.t1 |
| chr5.2 | exon | 71201402 | 71201467 | 71201402 | ID=MS.gene76087.t1.exon6;Parent=MS.gene76087.t1 |
| chr5.2 | CDS | 71201402 | 71201467 | 71201402 | ID=cds.MS.gene76087.t1;Parent=MS.gene76087.t1 |
| chr5.2 | exon | 71201206 | 71201269 | 71201206 | ID=MS.gene76087.t1.exon7;Parent=MS.gene76087.t1 |
| chr5.2 | CDS | 71201206 | 71201269 | 71201206 | ID=cds.MS.gene76087.t1;Parent=MS.gene76087.t1 |
| chr5.2 | exon | 71201043 | 71201092 | 71201043 | ID=MS.gene76087.t1.exon8;Parent=MS.gene76087.t1 |
| chr5.2 | CDS | 71201043 | 71201092 | 71201043 | ID=cds.MS.gene76087.t1;Parent=MS.gene76087.t1 |
| Gene Sequence |
| Protein sequence |
