Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94217.t1 | XP_003616685.1 | 98 | 249 | 5 | 0 | 1 | 249 | 1 | 249 | 3.40E-131 | 477.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94217.t1 | Q41709 | 78.9 | 247 | 48 | 2 | 1 | 245 | 1 | 245 | 8.9e-104 | 377.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94217.t1 | G7K283 | 98.0 | 249 | 5 | 0 | 1 | 249 | 1 | 249 | 2.5e-131 | 477.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene94217 | 0.804405 | 2.19E-49 | -1.69E-46 |
| MS.gene050426 | MS.gene94217 | -0.820267 | 7.51E-53 | -1.69E-46 |
| MS.gene050642 | MS.gene94217 | 0.801626 | 8.24E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene94217 | 0.812066 | 5.11E-51 | -1.69E-46 |
| MS.gene052469 | MS.gene94217 | 0.845048 | 5.18E-59 | -1.69E-46 |
| MS.gene054809 | MS.gene94217 | -0.830614 | 2.66E-55 | -1.69E-46 |
| MS.gene054810 | MS.gene94217 | -0.809015 | 2.33E-50 | -1.69E-46 |
| MS.gene05556 | MS.gene94217 | 0.804987 | 1.66E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene94217 | 0.807966 | 3.90E-50 | -1.69E-46 |
| MS.gene058119 | MS.gene94217 | 0.809573 | 1.77E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene94217 | 0.804091 | 2.55E-49 | -1.69E-46 |
| MS.gene059247 | MS.gene94217 | 0.837234 | 5.86E-57 | -1.69E-46 |
| MS.gene059946 | MS.gene94217 | 0.805149 | 1.53E-49 | -1.69E-46 |
| MS.gene060717 | MS.gene94217 | 0.822136 | 2.78E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene33454 | MS.gene94217 | PPI |
| MS.gene071032 | MS.gene94217 | PPI |
| MS.gene93375 | MS.gene94217 | PPI |
| MS.gene95674 | MS.gene94217 | PPI |
| MS.gene33707 | MS.gene94217 | PPI |
| MS.gene069003 | MS.gene94217 | PPI |
| MS.gene99504 | MS.gene94217 | PPI |
| MS.gene052792 | MS.gene94217 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94217.t1 | MTR_5g083170 | 97.992 | 249 | 5 | 0 | 1 | 249 | 1 | 249 | 0.0 | 501 |
| MS.gene94217.t1 | MTR_5g083170 | 97.906 | 191 | 4 | 0 | 1 | 191 | 1 | 191 | 1.21e-137 | 385 |
| MS.gene94217.t1 | MTR_7g069980 | 75.622 | 201 | 49 | 0 | 48 | 248 | 55 | 255 | 5.81e-107 | 310 |
| MS.gene94217.t1 | MTR_4g014540 | 77.157 | 197 | 45 | 0 | 48 | 244 | 54 | 250 | 2.31e-106 | 308 |
| MS.gene94217.t1 | MTR_5g072560 | 73.077 | 130 | 35 | 0 | 120 | 249 | 18 | 147 | 2.11e-66 | 202 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94217.t1 | AT3G11050 | 72.581 | 248 | 57 | 4 | 2 | 245 | 11 | 251 | 4.00e-124 | 353 |
| MS.gene94217.t1 | AT2G40300 | 80.583 | 206 | 39 | 1 | 38 | 243 | 53 | 257 | 7.63e-118 | 337 |
| MS.gene94217.t1 | AT5G01600 | 65.863 | 249 | 69 | 2 | 12 | 244 | 7 | 255 | 2.05e-114 | 328 |
| MS.gene94217.t1 | AT3G56090 | 79.293 | 198 | 41 | 0 | 50 | 247 | 62 | 259 | 2.61e-111 | 321 |
| MS.gene94217.t1 | AT3G61010 | 74.000 | 50 | 13 | 0 | 91 | 140 | 369 | 418 | 7.37e-18 | 82.4 |
| MS.gene94217.t1 | AT3G61010 | 74.000 | 50 | 13 | 0 | 91 | 140 | 369 | 418 | 7.37e-18 | 82.4 |
Find 35 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACTTGATTTGTTCATTAA+TGG | 0.196228 | 5.4:+65924615 | None:intergenic |
| GCTTCAACGTGGAAGTAAAT+TGG | 0.267790 | 5.4:-65924800 | MS.gene94217:CDS |
| AAAGACCGGTGATGTGAATT+TGG | 0.292838 | 5.4:-65922229 | MS.gene94217:CDS |
| TTGATGTAATTTCAGGTGTC+TGG | 0.348601 | 5.4:-65921877 | MS.gene94217:intron |
| GTGCAAAGCGTCACCCTTAT+CGG | 0.353274 | 5.4:+65923513 | None:intergenic |
| TGAGAAATTGATGGAATATC+AGG | 0.354314 | 5.4:-65924231 | MS.gene94217:intron |
| GTCTTACATTGTGCAGGTTA+AGG | 0.377061 | 5.4:+65922379 | None:intergenic |
| AAAGAATCTTGAGGAACAAT+AGG | 0.383929 | 5.4:+65924673 | None:intergenic |
| TGTGAATTTGGCAGACTTTG+TGG | 0.418668 | 5.4:-65922217 | MS.gene94217:CDS |
| TGAGTTTGATCATGCCGATA+AGG | 0.423249 | 5.4:-65923527 | MS.gene94217:CDS |
| GAGTTTGATCATGCCGATAA+GGG | 0.441841 | 5.4:-65923526 | MS.gene94217:CDS |
| CCACAGGTTGCCTCAAAGAC+CGG | 0.468429 | 5.4:-65922243 | MS.gene94217:intron |
| ATTCACATCACCGGTCTTTG+AGG | 0.489139 | 5.4:+65922233 | None:intergenic |
| AGGGCATGCTGAGAAATTGA+TGG | 0.491044 | 5.4:-65924240 | MS.gene94217:CDS |
| AATGGAACTTGCATTGTCCT+TGG | 0.503326 | 5.4:-65922424 | MS.gene94217:CDS |
| AAACATGTCTTACATTGTGC+AGG | 0.531800 | 5.4:+65922373 | None:intergenic |
| TACAGCAGCTTTGAGAAGCA+TGG | 0.535205 | 5.4:+65924873 | None:intergenic |
| CTCATTTGTTAGCTTCTCCA+AGG | 0.537044 | 5.4:+65922407 | None:intergenic |
| TCGTAGCAGAAACAGCGATT+CGG | 0.538135 | 5.4:+65924776 | None:intergenic |
| AGAGATAATGTTGCGCTGAA+AGG | 0.541910 | 5.4:-65924421 | MS.gene94217:CDS |
| GTCTGCCAAATTCACATCAC+CGG | 0.543362 | 5.4:+65922224 | None:intergenic |
| TTACTTCCACGTTGAAGCAA+CGG | 0.548255 | 5.4:+65924805 | None:intergenic |
| ATCGCTGTTTCTGCTACGAA+AGG | 0.563174 | 5.4:-65924772 | MS.gene94217:CDS |
| GTTGCTCAGCTAAGAAGAGT+TGG | 0.565145 | 5.4:-65922009 | MS.gene94217:CDS |
| AGAAGAGTTGGCAAAGGACA+TGG | 0.569821 | 5.4:-65921997 | MS.gene94217:intron |
| GAATCTAGTGAAGAGGAAAG+AGG | 0.571340 | 5.4:-65924260 | MS.gene94217:CDS |
| GATAAGGGTGACGCTTTGCA+CGG | 0.580509 | 5.4:-65923511 | MS.gene94217:intron |
| AATCTAGTGAAGAGGAAAGA+GGG | 0.584769 | 5.4:-65924259 | MS.gene94217:CDS |
| TGACGAGCTAAAGAATCTTG+AGG | 0.605682 | 5.4:+65924664 | None:intergenic |
| TCTTAGCTGAGCAACATACT+CGG | 0.619174 | 5.4:+65922017 | None:intergenic |
| ACAAAACACCGGTTAAAACA+CGG | 0.624694 | 5.4:+65924737 | None:intergenic |
| GCATGATCAAACTCAGAAAG+CGG | 0.645588 | 5.4:+65923535 | None:intergenic |
| AAAAGGTTCAAACAAAACAC+CGG | 0.645626 | 5.4:+65924726 | None:intergenic |
| CAGCTAAGAAGAGTTGGCAA+AGG | 0.650592 | 5.4:-65922003 | MS.gene94217:CDS |
| TTGATTCCGTTGCTTCAACG+TGG | 0.658320 | 5.4:-65924811 | MS.gene94217:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTACTTTACAAAATATTT+CGG | + | chr5.4:65924061-65924080 | None:intergenic | 10.0% |
| !!! | AATTTGACTATTTTTTAAAT+CGG | - | chr5.4:65922546-65922565 | MS.gene94217:intron | 10.0% |
| !!! | TGTTTTAATTTATTTTGTTT+TGG | - | chr5.4:65922328-65922347 | MS.gene94217:intron | 10.0% |
| !! | ATAGTCAAATTTCATTAAAT+TGG | + | chr5.4:65922537-65922556 | None:intergenic | 15.0% |
| !! | TAGTCAAATTTCATTAAATT+GGG | + | chr5.4:65922536-65922555 | None:intergenic | 15.0% |
| !!! | ATCATTATTTTTCTATTCAT+AGG | - | chr5.4:65924645-65924664 | MS.gene94217:CDS | 15.0% |
| !!! | GTTTTATTTTTAGAACAAAA+GGG | - | chr5.4:65923116-65923135 | MS.gene94217:intron | 15.0% |
| !!! | TGTTTTATTTTTAGAACAAA+AGG | - | chr5.4:65923115-65923134 | MS.gene94217:intron | 15.0% |
| !!! | TTTTATTTTTAGAACAAAAG+GGG | - | chr5.4:65923117-65923136 | MS.gene94217:intron | 15.0% |
| !!! | TTTTGTTTATAGGTTTTTTA+AGG | - | chr5.4:65922424-65922443 | MS.gene94217:CDS | 15.0% |
| !!! | TTTTGTTTTGGTTTTAATTT+TGG | - | chr5.4:65922340-65922359 | MS.gene94217:intron | 15.0% |
| !! | AAGATAATTGATGAATTTGT+GGG | - | chr5.4:65923385-65923404 | MS.gene94217:intron | 20.0% |
| !! | CCCTTAAACTAAAAATAAAA+CGG | + | chr5.4:65924574-65924593 | None:intergenic | 20.0% |
| !! | CTAAAAATAAAACGGAAATA+TGG | + | chr5.4:65924566-65924585 | None:intergenic | 20.0% |
| !! | GGTATATAATAAATCACAAA+AGG | - | chr5.4:65922794-65922813 | MS.gene94217:intron | 20.0% |
| !! | TATATCACTCTAACAAAAAA+TGG | - | chr5.4:65922742-65922761 | MS.gene94217:intron | 20.0% |
| !! | TTTATTATATACCGTTGTTA+TGG | + | chr5.4:65922787-65922806 | None:intergenic | 20.0% |
| !!! | ATTATTTTTCTATTCATAGG+TGG | - | chr5.4:65924648-65924667 | MS.gene94217:CDS | 20.0% |
| !!! | CCGTTTTATTTTTAGTTTAA+GGG | - | chr5.4:65924571-65924590 | MS.gene94217:intron | 20.0% |
| !!! | GATTATGTTGTTTTGTTTAT+AGG | - | chr5.4:65922414-65922433 | MS.gene94217:CDS | 20.0% |
| !!! | TCCGTTTTATTTTTAGTTTA+AGG | - | chr5.4:65924570-65924589 | MS.gene94217:intron | 20.0% |
| !!! | TTTTAAAGTGTTAACTTATG+TGG | - | chr5.4:65924801-65924820 | MS.gene94217:CDS | 20.0% |
| ! | AGTGTTAGATAATAGGTTAT+TGG | + | chr5.4:65922862-65922881 | None:intergenic | 25.0% |
| ! | AGTTAGAAAAATAATGTGCA+TGG | + | chr5.4:65924755-65924774 | None:intergenic | 25.0% |
| ! | CTACAAAACTAGTAATTAGA+GGG | + | chr5.4:65924123-65924142 | None:intergenic | 25.0% |
| ! | CTTAATGATTACAAGAAACA+TGG | + | chr5.4:65924022-65924041 | None:intergenic | 25.0% |
| ! | GAAGATAATTGATGAATTTG+TGG | - | chr5.4:65923384-65923403 | MS.gene94217:intron | 25.0% |
| ! | GTGTTAGATAATAGGTTATT+GGG | + | chr5.4:65922861-65922880 | None:intergenic | 25.0% |
| ! | TACAAAACTAGTAATTAGAG+GGG | + | chr5.4:65924122-65924141 | None:intergenic | 25.0% |
| ! | TACAATTATGATATACCCAA+AGG | - | chr5.4:65923911-65923930 | MS.gene94217:intron | 25.0% |
| ! | TACTAACTTAGAAACATAAG+TGG | - | chr5.4:65922821-65922840 | MS.gene94217:intron | 25.0% |
| ! | TAGATCATTTGTTCTGTAAT+TGG | - | chr5.4:65923237-65923256 | MS.gene94217:intron | 25.0% |
| ! | TCAATAGAATACCATAACAA+CGG | - | chr5.4:65922773-65922792 | MS.gene94217:intron | 25.0% |
| ! | TCTACAAAACTAGTAATTAG+AGG | + | chr5.4:65924124-65924143 | None:intergenic | 25.0% |
| ! | TGATTGTCGAAACTATAAAA+CGG | + | chr5.4:65923874-65923893 | None:intergenic | 25.0% |
| ! | TGGGTATATCATAATTGTAT+TGG | + | chr5.4:65923910-65923929 | None:intergenic | 25.0% |
| !! | CATAAATGTAATCTGAAATC+TGG | + | chr5.4:65924089-65924108 | None:intergenic | 25.0% |
| !!! | ACTAGAATCCTTAGTTTTAT+AGG | - | chr5.4:65923693-65923712 | MS.gene94217:intron | 25.0% |
| !!! | ACTTATTTTTGTTGCCTTAT+TGG | - | chr5.4:65923055-65923074 | MS.gene94217:intron | 25.0% |
| !!! | ATACTCGGATATTTTTTTGA+TGG | + | chr5.4:65924677-65924696 | None:intergenic | 25.0% |
| !!! | CTAGAATCCTTAGTTTTATA+GGG | - | chr5.4:65923694-65923713 | MS.gene94217:intron | 25.0% |
| !!! | GAACTTGATTTGTTCATTAA+TGG | + | chr5.4:65922094-65922113 | None:intergenic | 25.0% |
| !!! | TAGAATCCTTAGTTTTATAG+GGG | - | chr5.4:65923695-65923714 | MS.gene94217:intron | 25.0% |
| AAAAGGTTCAAACAAAACAC+CGG | + | chr5.4:65921983-65922002 | None:intergenic | 30.0% | |
| AAAGAATCTTGAGGAACAAT+AGG | + | chr5.4:65922036-65922055 | None:intergenic | 30.0% | |
| AAATTCGACGACTTTCTAAT+CGG | + | chr5.4:65922992-65923011 | None:intergenic | 30.0% | |
| AAGAAACATGGTCACAATTA+AGG | + | chr5.4:65924010-65924029 | None:intergenic | 30.0% | |
| ACAAAACTAGTAATTAGAGG+GGG | + | chr5.4:65924121-65924140 | None:intergenic | 30.0% | |
| ACGTTTCCTTAGATTTCTAT+TGG | + | chr5.4:65922638-65922657 | None:intergenic | 30.0% | |
| AGAAACATGGTCACAATTAA+GGG | + | chr5.4:65924009-65924028 | None:intergenic | 30.0% | |
| ATTATGATATACCCAAAGGA+AGG | - | chr5.4:65923915-65923934 | MS.gene94217:intron | 30.0% | |
| CATACGTAAAGTTAAGAGAA+AGG | + | chr5.4:65924438-65924457 | None:intergenic | 30.0% | |
| CCTATTATCTAACACTTCAA+AGG | - | chr5.4:65922866-65922885 | MS.gene94217:intron | 30.0% | |
| CTTTGGTTACTAGATCAATA+AGG | - | chr5.4:65922926-65922945 | MS.gene94217:intron | 30.0% | |
| GATTGAACTGAATCAAAAAG+TGG | - | chr5.4:65923476-65923495 | MS.gene94217:intron | 30.0% | |
| GATTGTCGAAACTATAAAAC+GGG | + | chr5.4:65923873-65923892 | None:intergenic | 30.0% | |
| GTATTTCCCCTATAAAACTA+AGG | + | chr5.4:65923704-65923723 | None:intergenic | 30.0% | |
| TCACAAGATAACTACCAATA+AGG | + | chr5.4:65923072-65923091 | None:intergenic | 30.0% | |
| TCACAATTCAGACTCAATTA+AGG | + | chr5.4:65923298-65923317 | None:intergenic | 30.0% | |
| TCTTATCTTTATTGCAGCAA+TGG | - | chr5.4:65924264-65924283 | MS.gene94217:CDS | 30.0% | |
| TGAGAAATTGATGGAATATC+AGG | - | chr5.4:65922475-65922494 | MS.gene94217:intron | 30.0% | |
| TTATGATATACCCAAAGGAA+GGG | - | chr5.4:65923916-65923935 | MS.gene94217:intron | 30.0% | |
| TTGACACCAATAGAAATCTA+AGG | - | chr5.4:65922629-65922648 | MS.gene94217:intron | 30.0% | |
| ! | TCCTTTTTAACCTCTTCAAA+AGG | + | chr5.4:65922000-65922019 | None:intergenic | 30.0% |
| ! | TGTTAATCAACTGTTAGCTT+TGG | - | chr5.4:65922909-65922928 | MS.gene94217:intron | 30.0% |
| !! | AAGACATGTTTGTTGAGTTT+TGG | - | chr5.4:65924345-65924364 | MS.gene94217:intron | 30.0% |
| !! | ACCTTTTGAAGAGGTTAAAA+AGG | - | chr5.4:65921996-65922015 | MS.gene94217:intron | 30.0% |
| !! | CCTTTGAAGTGTTAGATAAT+AGG | + | chr5.4:65922869-65922888 | None:intergenic | 30.0% |
| !! | GTTAACACTTTAAAATGCAG+AGG | + | chr5.4:65924796-65924815 | None:intergenic | 30.0% |
| !! | TTTGTTTGAACCTTTTGAAG+AGG | - | chr5.4:65921987-65922006 | MS.gene94217:intron | 30.0% |
| !! | TTTTAAGGAATCTAGTGAAG+AGG | - | chr5.4:65922439-65922458 | MS.gene94217:intron | 30.0% |
| !! | TTTTTCAGATCACACTTTCT+TGG | + | chr5.4:65923521-65923540 | None:intergenic | 30.0% |
| !!! | AACAATAACCGTGTTTTAAC+CGG | - | chr5.4:65921961-65921980 | MS.gene94217:intron | 30.0% |
| !!! | TATTTTTAGAACAAAAGGGG+TGG | - | chr5.4:65923120-65923139 | MS.gene94217:intron | 30.0% |
| AAACATGTCTTACATTGTGC+AGG | + | chr5.4:65924336-65924355 | None:intergenic | 35.0% | |
| AACACTTCAAAGGTTAACAC+AGG | - | chr5.4:65922876-65922895 | MS.gene94217:intron | 35.0% | |
| AACAGGGAATCACGATATTA+AGG | + | chr5.4:65923963-65923982 | None:intergenic | 35.0% | |
| AATCATTAAGATGTTTGCCC+TGG | - | chr5.4:65924032-65924051 | MS.gene94217:intron | 35.0% | |
| AATCTAGTGAAGAGGAAAGA+GGG | - | chr5.4:65922447-65922466 | MS.gene94217:intron | 35.0% | |
| AATGATAAATCCCCTTCCTT+TGG | + | chr5.4:65923930-65923949 | None:intergenic | 35.0% | |
| AATTCAGACTCAATTAAGGC+AGG | + | chr5.4:65923294-65923313 | None:intergenic | 35.0% | |
| AATTGATGAATTTGTGGGCT+TGG | - | chr5.4:65923390-65923409 | MS.gene94217:intron | 35.0% | |
| ACAAAATATTTCGGATGCCA+GGG | + | chr5.4:65924052-65924071 | None:intergenic | 35.0% | |
| AGACACCTGAAATTACATCA+AGG | + | chr5.4:65924830-65924849 | None:intergenic | 35.0% | |
| ATGATAAATCCCCTTCCTTT+GGG | + | chr5.4:65923929-65923948 | None:intergenic | 35.0% | |
| ATTGTCATTGCCATTGTATC+TGG | + | chr5.4:65923800-65923819 | None:intergenic | 35.0% | |
| CTTGTGTGACATTAATGTCA+CGG | - | chr5.4:65923723-65923742 | MS.gene94217:intron | 35.0% | |
| GAAAATCCAATCATCCAATC+AGG | + | chr5.4:65924224-65924243 | None:intergenic | 35.0% | |
| GGAAGGGGATTTATCATTTA+TGG | - | chr5.4:65923932-65923951 | MS.gene94217:intron | 35.0% | |
| TAATATCGTGATTCCCTGTT+TGG | - | chr5.4:65923963-65923982 | MS.gene94217:intron | 35.0% | |
| TAATTAATGCCCATGAAGCA+CGG | - | chr5.4:65922569-65922588 | MS.gene94217:intron | 35.0% | |
| TACAAAATATTTCGGATGCC+AGG | + | chr5.4:65924053-65924072 | None:intergenic | 35.0% | |
| TATGACACAGAAACCAAACT+GGG | - | chr5.4:65923633-65923652 | MS.gene94217:intron | 35.0% | |
| TATGATATACCCAAAGGAAG+GGG | - | chr5.4:65923917-65923936 | MS.gene94217:intron | 35.0% | |
| TTGTCATTGCCATTGTATCT+GGG | + | chr5.4:65923799-65923818 | None:intergenic | 35.0% | |
| ! | ACAAAACACCGGTTAAAACA+CGG | + | chr5.4:65921972-65921991 | None:intergenic | 35.0% |
| ! | CTTTACGTATGTTTTTCCAC+AGG | - | chr5.4:65924447-65924466 | MS.gene94217:CDS | 35.0% |
| ! | GTTGTTGTTGTTGTTGTTGT+TGG | - | chr5.4:65922200-65922219 | MS.gene94217:CDS | 35.0% |
| ! | TGTGATGTGTGTGGATTTTA+TGG | - | chr5.4:65923313-65923332 | MS.gene94217:intron | 35.0% |
| ! | TTGATGTAATTTCAGGTGTC+TGG | - | chr5.4:65924829-65924848 | MS.gene94217:CDS | 35.0% |
| ! | TTTGTGGAAAGCGAGTTTTT+GGG | - | chr5.4:65924505-65924524 | MS.gene94217:intron | 35.0% |
| !! | ATCATTACTGATTCCCAGTT+TGG | + | chr5.4:65923649-65923668 | None:intergenic | 35.0% |
| !! | TTCTATTGGTGTCAATGTGT+CGG | + | chr5.4:65922624-65922643 | None:intergenic | 35.0% |
| !! | TTTCATCAAGTTGAGATTGC+TGG | - | chr5.4:65923600-65923619 | MS.gene94217:intron | 35.0% |
| !!! | GCACGGTTAGTTTCTTTTTT+TGG | - | chr5.4:65923212-65923231 | MS.gene94217:intron | 35.0% |
| AAAGACCGGTGATGTGAATT+TGG | - | chr5.4:65924477-65924496 | MS.gene94217:intron | 40.0% | |
| AATGGAACTTGCATTGTCCT+TGG | - | chr5.4:65924282-65924301 | MS.gene94217:intron | 40.0% | |
| ACAATGGCAATGACAATGTG+TGG | - | chr5.4:65923803-65923822 | MS.gene94217:intron | 40.0% | |
| ACATGGTCACAATTAAGGGA+TGG | + | chr5.4:65924005-65924024 | None:intergenic | 40.0% | |
| AGAGATAATGTTGCGCTGAA+AGG | - | chr5.4:65922285-65922304 | MS.gene94217:intron | 40.0% | |
| AGTCTGAATTGTGATGTGTG+TGG | - | chr5.4:65923304-65923323 | MS.gene94217:intron | 40.0% | |
| ATCTAATGTCACCCAATGTG+TGG | + | chr5.4:65923765-65923784 | None:intergenic | 40.0% | |
| ATGAAGCACGGATACATACA+CGG | - | chr5.4:65922581-65922600 | MS.gene94217:intron | 40.0% | |
| ATTAAATCTGGGCCACACAT+TGG | - | chr5.4:65923750-65923769 | MS.gene94217:intron | 40.0% | |
| CTATGACACAGAAACCAAAC+TGG | - | chr5.4:65923632-65923651 | MS.gene94217:intron | 40.0% | |
| CTGGTATCCAATTCCAAACA+GGG | + | chr5.4:65923979-65923998 | None:intergenic | 40.0% | |
| GAATCTAGTGAAGAGGAAAG+AGG | - | chr5.4:65922446-65922465 | MS.gene94217:intron | 40.0% | |
| GAGTTTGATCATGCCGATAA+GGG | - | chr5.4:65923180-65923199 | MS.gene94217:intron | 40.0% | |
| GCAATGAGTAACACAAGATG+TGG | - | chr5.4:65924182-65924201 | MS.gene94217:intron | 40.0% | |
| GCATGATCAAACTCAGAAAG+CGG | + | chr5.4:65923174-65923193 | None:intergenic | 40.0% | |
| GCTTCAACGTGGAAGTAAAT+TGG | - | chr5.4:65921906-65921925 | MS.gene94217:intron | 40.0% | |
| GGCTTCCTTGATGTAATTTC+AGG | - | chr5.4:65924822-65924841 | MS.gene94217:CDS | 40.0% | |
| GTACTACCTGATTGGATGAT+TGG | - | chr5.4:65924215-65924234 | MS.gene94217:intron | 40.0% | |
| GTCACATTGTACTACCTGAT+TGG | - | chr5.4:65924207-65924226 | MS.gene94217:intron | 40.0% | |
| GTCACGGTGACATTAAATCT+GGG | - | chr5.4:65923739-65923758 | MS.gene94217:intron | 40.0% | |
| GTCTTACATTGTGCAGGTTA+AGG | + | chr5.4:65924330-65924349 | None:intergenic | 40.0% | |
| GTGACATTAGATGTGTTGTG+TGG | - | chr5.4:65923773-65923792 | MS.gene94217:intron | 40.0% | |
| GTTAATGCAGTTCGTACACA+TGG | + | chr5.4:65922970-65922989 | None:intergenic | 40.0% | |
| TCTTAGCTGAGCAACATACT+CGG | + | chr5.4:65924692-65924711 | None:intergenic | 40.0% | |
| TGACGAGCTAAAGAATCTTG+AGG | + | chr5.4:65922045-65922064 | None:intergenic | 40.0% | |
| TGAGTTTGATCATGCCGATA+AGG | - | chr5.4:65923179-65923198 | MS.gene94217:intron | 40.0% | |
| TGTATGTATCCGTGCTTCAT+GGG | + | chr5.4:65922581-65922600 | None:intergenic | 40.0% | |
| TGTCACGGTGACATTAAATC+TGG | - | chr5.4:65923738-65923757 | MS.gene94217:intron | 40.0% | |
| TGTCGAAACTATAAAACGGG+TGG | + | chr5.4:65923870-65923889 | None:intergenic | 40.0% | |
| TGTGAATTTGGCAGACTTTG+TGG | - | chr5.4:65924489-65924508 | MS.gene94217:intron | 40.0% | |
| TTAAATCTGGGCCACACATT+GGG | - | chr5.4:65923751-65923770 | MS.gene94217:intron | 40.0% | |
| TTACTTCCACGTTGAAGCAA+CGG | + | chr5.4:65921904-65921923 | None:intergenic | 40.0% | |
| ! | ACGTCTAAAACTCTGACACT+TGG | - | chr5.4:65922654-65922673 | MS.gene94217:intron | 40.0% |
| ! | CTCATTTGTTAGCTTCTCCA+AGG | + | chr5.4:65924302-65924321 | None:intergenic | 40.0% |
| ! | CTTTGTGGAAAGCGAGTTTT+TGG | - | chr5.4:65924504-65924523 | MS.gene94217:intron | 40.0% |
| !! | TTTCATCAAGTTGAGCTTGC+TGG | - | chr5.4:65923571-65923590 | MS.gene94217:CDS | 40.0% |
| !!! | AGTTTTGGTGTCTGGTTTAC+GGG | - | chr5.4:65924360-65924379 | MS.gene94217:intron | 40.0% |
| !!! | GAGTTTTGGTGTCTGGTTTA+CGG | - | chr5.4:65924359-65924378 | MS.gene94217:intron | 40.0% |
| !!! | GTTTGTTGAGTTTTGGTGTC+TGG | - | chr5.4:65924352-65924371 | MS.gene94217:intron | 40.0% |
| AAACTCTGACACTTGGACAC+AGG | - | chr5.4:65922661-65922680 | MS.gene94217:intron | 45.0% | |
| AGAAGAGTTGGCAAAGGACA+TGG | - | chr5.4:65924709-65924728 | MS.gene94217:CDS | 45.0% | |
| AGGGCATGCTGAGAAATTGA+TGG | - | chr5.4:65922466-65922485 | MS.gene94217:intron | 45.0% | |
| ATTCACATCACCGGTCTTTG+AGG | + | chr5.4:65924476-65924495 | None:intergenic | 45.0% | |
| CAGCTAAGAAGAGTTGGCAA+AGG | - | chr5.4:65924703-65924722 | MS.gene94217:CDS | 45.0% | |
| CCTGGTATCCAATTCCAAAC+AGG | + | chr5.4:65923980-65923999 | None:intergenic | 45.0% | |
| CTATAAAACGGGTGGCACTT+TGG | + | chr5.4:65923862-65923881 | None:intergenic | 45.0% | |
| GGTTATTGGGCTTGTGCTAT+TGG | + | chr5.4:65922848-65922867 | None:intergenic | 45.0% | |
| GTCTGCCAAATTCACATCAC+CGG | + | chr5.4:65924485-65924504 | None:intergenic | 45.0% | |
| GTGTATGTATCCGTGCTTCA+TGG | + | chr5.4:65922582-65922601 | None:intergenic | 45.0% | |
| GTTGCTCAGCTAAGAAGAGT+TGG | - | chr5.4:65924697-65924716 | MS.gene94217:CDS | 45.0% | |
| TCGTAGCAGAAACAGCGATT+CGG | + | chr5.4:65921933-65921952 | None:intergenic | 45.0% | |
| TTGATTCCGTTGCTTCAACG+TGG | - | chr5.4:65921895-65921914 | MS.gene94217:intron | 45.0% | |
| ! | CCTGTTTGGAATTGGATACC+AGG | - | chr5.4:65923977-65923996 | MS.gene94217:intron | 45.0% |
| ! | CGGAATCAAACGCGTGTTTT+CGG | + | chr5.4:65921884-65921903 | None:intergenic | 45.0% |
| ! | CGTGATTCCCTGTTTGGAAT+TGG | - | chr5.4:65923969-65923988 | MS.gene94217:intron | 45.0% |
| !! | ATCGCTGTTTCTGCTACGAA+AGG | - | chr5.4:65921934-65921953 | MS.gene94217:intron | 45.0% |
| !! | GTTGTTGGTGTTGAACAGTG+TGG | - | chr5.4:65922215-65922234 | MS.gene94217:CDS | 45.0% |
| !!! | AAGCGAGTTTTTGGGTGAAC+AGG | - | chr5.4:65924513-65924532 | MS.gene94217:intron | 45.0% |
| !!! | TTGATTTATTTAATTAATTT+TGG | - | chr5.4:65922171-65922190 | MS.gene94217:intron | 5.0% |
| AATGTGTGGCCCAGATGCAA+TGG | - | chr5.4:65923817-65923836 | MS.gene94217:intron | 50.0% | |
| CACAATTAAGGGATGGTGCC+TGG | + | chr5.4:65923998-65924017 | None:intergenic | 50.0% | |
| GATAAGGGTGACGCTTTGCA+CGG | - | chr5.4:65923195-65923214 | MS.gene94217:intron | 50.0% | |
| GTTGTGTGGCCCAGATACAA+TGG | - | chr5.4:65923787-65923806 | MS.gene94217:intron | 50.0% | |
| ! | GTGCAAAGCGTCACCCTTAT+CGG | + | chr5.4:65923196-65923215 | None:intergenic | 50.0% |
| CCACAGGTTGCCTCAAAGAC+CGG | - | chr5.4:65924463-65924482 | MS.gene94217:CDS | 55.0% | |
| ! | GTCACCGTGCCATTGCATCT+GGG | + | chr5.4:65923829-65923848 | None:intergenic | 55.0% |
| ! | TGTCACCGTGCCATTGCATC+TGG | + | chr5.4:65923830-65923849 | None:intergenic | 55.0% |
| GTGGCCCAGATGCAATGGCA+CGG | - | chr5.4:65923822-65923841 | MS.gene94217:intron | 60.0% | |
| !! | CCGGTCTTTGAGGCAACCTG+TGG | + | chr5.4:65924466-65924485 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 65921835 | 65924893 | 65921835 | ID=MS.gene94217 |
| chr5.4 | mRNA | 65921835 | 65924893 | 65921835 | ID=MS.gene94217.t1;Parent=MS.gene94217 |
| chr5.4 | exon | 65924619 | 65924893 | 65924619 | ID=MS.gene94217.t1.exon1;Parent=MS.gene94217.t1 |
| chr5.4 | CDS | 65924619 | 65924893 | 65924619 | ID=cds.MS.gene94217.t1;Parent=MS.gene94217.t1 |
| chr5.4 | exon | 65924412 | 65924495 | 65924412 | ID=MS.gene94217.t1.exon2;Parent=MS.gene94217.t1 |
| chr5.4 | CDS | 65924412 | 65924495 | 65924412 | ID=cds.MS.gene94217.t1;Parent=MS.gene94217.t1 |
| chr5.4 | exon | 65924232 | 65924292 | 65924232 | ID=MS.gene94217.t1.exon3;Parent=MS.gene94217.t1 |
| chr5.4 | CDS | 65924232 | 65924292 | 65924232 | ID=cds.MS.gene94217.t1;Parent=MS.gene94217.t1 |
| chr5.4 | exon | 65923512 | 65923599 | 65923512 | ID=MS.gene94217.t1.exon4;Parent=MS.gene94217.t1 |
| chr5.4 | CDS | 65923512 | 65923599 | 65923512 | ID=cds.MS.gene94217.t1;Parent=MS.gene94217.t1 |
| chr5.4 | exon | 65922386 | 65922447 | 65922386 | ID=MS.gene94217.t1.exon5;Parent=MS.gene94217.t1 |
| chr5.4 | CDS | 65922386 | 65922447 | 65922386 | ID=cds.MS.gene94217.t1;Parent=MS.gene94217.t1 |
| chr5.4 | exon | 65922194 | 65922259 | 65922194 | ID=MS.gene94217.t1.exon6;Parent=MS.gene94217.t1 |
| chr5.4 | CDS | 65922194 | 65922259 | 65922194 | ID=cds.MS.gene94217.t1;Parent=MS.gene94217.t1 |
| chr5.4 | exon | 65921998 | 65922061 | 65921998 | ID=MS.gene94217.t1.exon7;Parent=MS.gene94217.t1 |
| chr5.4 | CDS | 65921998 | 65922061 | 65921998 | ID=cds.MS.gene94217.t1;Parent=MS.gene94217.t1 |
| chr5.4 | exon | 65921835 | 65921884 | 65921835 | ID=MS.gene94217.t1.exon8;Parent=MS.gene94217.t1 |
| chr5.4 | CDS | 65921835 | 65921884 | 65921835 | ID=cds.MS.gene94217.t1;Parent=MS.gene94217.t1 |
| Gene Sequence |
| Protein sequence |
