Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071223.t1 | XP_003616685.1 | 98.4 | 249 | 4 | 0 | 1 | 249 | 1 | 249 | 1.50E-131 | 478.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071223.t1 | Q41709 | 78.9 | 247 | 48 | 2 | 1 | 245 | 1 | 245 | 8.9e-104 | 377.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071223.t1 | G7K283 | 98.4 | 249 | 4 | 0 | 1 | 249 | 1 | 249 | 1.1e-131 | 478.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050133 | MS.gene071223 | -0.806454 | 8.16E-50 | -1.69E-46 |
| MS.gene052134 | MS.gene071223 | 0.803671 | 3.12E-49 | -1.69E-46 |
| MS.gene052469 | MS.gene071223 | 0.863809 | 1.91E-64 | -1.69E-46 |
| MS.gene054809 | MS.gene071223 | -0.822173 | 2.73E-53 | -1.69E-46 |
| MS.gene054810 | MS.gene071223 | -0.825059 | 5.76E-54 | -1.69E-46 |
| MS.gene05556 | MS.gene071223 | 0.834109 | 3.62E-56 | -1.69E-46 |
| MS.gene060717 | MS.gene071223 | 0.830728 | 2.49E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene93375 | MS.gene071223 | PPI |
| MS.gene95674 | MS.gene071223 | PPI |
| MS.gene33707 | MS.gene071223 | PPI |
| MS.gene069003 | MS.gene071223 | PPI |
| MS.gene052792 | MS.gene071223 | PPI |
| MS.gene071223 | MS.gene99504 | PPI |
| MS.gene071032 | MS.gene071223 | PPI |
| MS.gene33454 | MS.gene071223 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071223.t1 | MTR_5g083170 | 98.394 | 249 | 4 | 0 | 1 | 249 | 1 | 249 | 0.0 | 503 |
| MS.gene071223.t1 | MTR_5g083170 | 97.906 | 191 | 4 | 0 | 1 | 191 | 1 | 191 | 1.27e-137 | 385 |
| MS.gene071223.t1 | MTR_7g069980 | 75.622 | 201 | 49 | 0 | 48 | 248 | 55 | 255 | 5.63e-107 | 310 |
| MS.gene071223.t1 | MTR_4g014540 | 77.157 | 197 | 45 | 0 | 48 | 244 | 54 | 250 | 2.73e-106 | 308 |
| MS.gene071223.t1 | MTR_5g072560 | 73.077 | 130 | 35 | 0 | 120 | 249 | 18 | 147 | 1.42e-66 | 203 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071223.t1 | AT3G11050 | 72.581 | 248 | 57 | 4 | 2 | 245 | 11 | 251 | 3.50e-124 | 353 |
| MS.gene071223.t1 | AT2G40300 | 80.583 | 206 | 39 | 1 | 38 | 243 | 53 | 257 | 8.42e-118 | 337 |
| MS.gene071223.t1 | AT5G01600 | 65.863 | 249 | 69 | 2 | 12 | 244 | 7 | 255 | 1.70e-114 | 328 |
| MS.gene071223.t1 | AT3G56090 | 79.798 | 198 | 40 | 0 | 50 | 247 | 62 | 259 | 7.83e-112 | 322 |
| MS.gene071223.t1 | AT3G61010 | 74.000 | 50 | 13 | 0 | 91 | 140 | 369 | 418 | 7.16e-18 | 82.4 |
| MS.gene071223.t1 | AT3G61010 | 74.000 | 50 | 13 | 0 | 91 | 140 | 369 | 418 | 7.16e-18 | 82.4 |
Find 35 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACTTGATTTGTTCATTAA+TGG | 0.196228 | 5.1:+65432149 | None:intergenic |
| GCTTCAACGTGGAAGTAAAT+TGG | 0.267790 | 5.1:-65432334 | MS.gene071223:CDS |
| AAAGACCGGTGATGTGAATT+TGG | 0.292838 | 5.1:-65429766 | MS.gene071223:CDS |
| TTGATGTAATTTCAGGTGTC+TGG | 0.348601 | 5.1:-65429414 | MS.gene071223:intron |
| GTGCAAAGCGTCACCCTTAT+CGG | 0.353274 | 5.1:+65431050 | None:intergenic |
| TGAGAAATTGATGGAATATC+AGG | 0.354314 | 5.1:-65431768 | MS.gene071223:intron |
| GTCTTACATTGTGCAGGTTA+AGG | 0.377061 | 5.1:+65429916 | None:intergenic |
| AAAGAATCTTGAGGAACAAT+AGG | 0.383929 | 5.1:+65432207 | None:intergenic |
| TGTGAATTTGGCAGACTTTG+TGG | 0.418668 | 5.1:-65429754 | MS.gene071223:CDS |
| TGAGTTTGATCATGCCGATA+AGG | 0.423249 | 5.1:-65431064 | MS.gene071223:CDS |
| GAGTTTGATCATGCCGATAA+GGG | 0.441841 | 5.1:-65431063 | MS.gene071223:CDS |
| CCACAGGTTGCCTCAAAGAC+CGG | 0.468429 | 5.1:-65429780 | MS.gene071223:intron |
| ATTCACATCACCGGTCTTTG+AGG | 0.489139 | 5.1:+65429770 | None:intergenic |
| AGGGCATGCTGAGAAATTGA+TGG | 0.491044 | 5.1:-65431777 | MS.gene071223:CDS |
| AATGGAACTTGCATTGTCCT+TGG | 0.503326 | 5.1:-65429961 | MS.gene071223:CDS |
| AAACATGTCTTACATTGTGC+AGG | 0.531800 | 5.1:+65429910 | None:intergenic |
| TACAGCAGCTTTGAGAAGCA+TGG | 0.535205 | 5.1:+65432407 | None:intergenic |
| CTCATTTGTTAGCTTCTCCA+AGG | 0.537044 | 5.1:+65429944 | None:intergenic |
| TCGTAGCAGAAACAGCGATT+CGG | 0.538135 | 5.1:+65432310 | None:intergenic |
| AGAGATAATGTTGCGCTGAA+AGG | 0.541910 | 5.1:-65431958 | MS.gene071223:CDS |
| GTCTGCCAAATTCACATCAC+CGG | 0.543362 | 5.1:+65429761 | None:intergenic |
| TTACTTCCACGTTGAAGCAA+CGG | 0.548255 | 5.1:+65432339 | None:intergenic |
| ATCGCTGTTTCTGCTACGAA+AGG | 0.563174 | 5.1:-65432306 | MS.gene071223:CDS |
| GTTGCTCAGCTAAGAAGAGT+TGG | 0.565145 | 5.1:-65429546 | MS.gene071223:CDS |
| AGAAGAGTTGGCAAAGGACA+TGG | 0.569821 | 5.1:-65429534 | MS.gene071223:intron |
| GAATCTAGTGAAGAGGAAAG+AGG | 0.571340 | 5.1:-65431797 | MS.gene071223:CDS |
| GATAAGGGTGACGCTTTGCA+CGG | 0.580509 | 5.1:-65431048 | MS.gene071223:intron |
| AATCTAGTGAAGAGGAAAGA+GGG | 0.584769 | 5.1:-65431796 | MS.gene071223:CDS |
| TGACGAGCTAAAGAATCTTG+AGG | 0.605682 | 5.1:+65432198 | None:intergenic |
| TCTTAGCTGAGCAACATACT+CGG | 0.619174 | 5.1:+65429554 | None:intergenic |
| ACAAAACACCGGTTAAAACA+CGG | 0.624694 | 5.1:+65432271 | None:intergenic |
| GCATGATCAAACTCAGAAAG+CGG | 0.645588 | 5.1:+65431072 | None:intergenic |
| AAAAGGTTCAAACAAAACAC+CGG | 0.645626 | 5.1:+65432260 | None:intergenic |
| CAGCTAAGAAGAGTTGGCAA+AGG | 0.650592 | 5.1:-65429540 | MS.gene071223:CDS |
| TTGATTCCGTTGCTTCAACG+TGG | 0.658320 | 5.1:-65432345 | MS.gene071223:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTACTTTACAAAATATTT+CGG | + | chr5.1:65431595-65431614 | None:intergenic | 10.0% |
| !!! | AATTTGACTATTTTTTAAAT+CGG | - | chr5.1:65430080-65430099 | MS.gene071223:intron | 10.0% |
| !!! | TGTTTTAATTTATTTTGTTT+TGG | - | chr5.1:65429862-65429881 | MS.gene071223:intron | 10.0% |
| !!! | ATCATTATTTTTCTATTCAT+AGG | - | chr5.1:65432179-65432198 | MS.gene071223:CDS | 15.0% |
| !!! | GTTTTATTTTTAGAACAAAA+GGG | - | chr5.1:65430650-65430669 | MS.gene071223:intron | 15.0% |
| !!! | TGTTTTATTTTTAGAACAAA+AGG | - | chr5.1:65430649-65430668 | MS.gene071223:intron | 15.0% |
| !!! | TTTTATTTTTAGAACAAAAG+GGG | - | chr5.1:65430651-65430670 | MS.gene071223:intron | 15.0% |
| !!! | TTTTGTTTATAGGTTTTTTA+AGG | - | chr5.1:65429958-65429977 | MS.gene071223:CDS | 15.0% |
| !!! | TTTTGTTTTGGTTTTAATTT+TGG | - | chr5.1:65429874-65429893 | MS.gene071223:intron | 15.0% |
| !! | AAGATAATTGATGAATTTGT+GGG | - | chr5.1:65430919-65430938 | MS.gene071223:intron | 20.0% |
| !! | ATAGTCAAATTTCATTAAAC+TGG | + | chr5.1:65430071-65430090 | None:intergenic | 20.0% |
| !! | CCCTTAAACTAAAAATAAAA+CGG | + | chr5.1:65432108-65432127 | None:intergenic | 20.0% |
| !! | CTAAAAATAAAACGGAAATA+TGG | + | chr5.1:65432100-65432119 | None:intergenic | 20.0% |
| !! | GGTATATAATAAATCACAAA+AGG | - | chr5.1:65430328-65430347 | MS.gene071223:intron | 20.0% |
| !! | TAGTCAAATTTCATTAAACT+GGG | + | chr5.1:65430070-65430089 | None:intergenic | 20.0% |
| !! | TATATCACTCTAACAAAAAA+TGG | - | chr5.1:65430276-65430295 | MS.gene071223:intron | 20.0% |
| !! | TTTATTATATACCGTTGTTA+TGG | + | chr5.1:65430321-65430340 | None:intergenic | 20.0% |
| !!! | ATTATTTTTCTATTCATAGG+TGG | - | chr5.1:65432182-65432201 | MS.gene071223:CDS | 20.0% |
| !!! | CCGTTTTATTTTTAGTTTAA+GGG | - | chr5.1:65432105-65432124 | MS.gene071223:intron | 20.0% |
| !!! | GATTATGTTGTTTTGTTTAT+AGG | - | chr5.1:65429948-65429967 | MS.gene071223:CDS | 20.0% |
| !!! | TCCGTTTTATTTTTAGTTTA+AGG | - | chr5.1:65432104-65432123 | MS.gene071223:intron | 20.0% |
| !!! | TTTTAAAGTGTTAACTTATG+TGG | - | chr5.1:65432335-65432354 | MS.gene071223:CDS | 20.0% |
| ! | AGTGTTAGATAATAGGTTAT+TGG | + | chr5.1:65430396-65430415 | None:intergenic | 25.0% |
| ! | AGTTAGAAAAATAATGTGCA+TGG | + | chr5.1:65432289-65432308 | None:intergenic | 25.0% |
| ! | CTACAAAACTAGTAATTAGA+GGG | + | chr5.1:65431657-65431676 | None:intergenic | 25.0% |
| ! | CTTAATGATTACAAGAAACA+TGG | + | chr5.1:65431556-65431575 | None:intergenic | 25.0% |
| ! | GAAGATAATTGATGAATTTG+TGG | - | chr5.1:65430918-65430937 | MS.gene071223:intron | 25.0% |
| ! | GTGTTAGATAATAGGTTATT+GGG | + | chr5.1:65430395-65430414 | None:intergenic | 25.0% |
| ! | TACAAAACTAGTAATTAGAG+GGG | + | chr5.1:65431656-65431675 | None:intergenic | 25.0% |
| ! | TACAATTATGATATACCCAA+AGG | - | chr5.1:65431445-65431464 | MS.gene071223:intron | 25.0% |
| ! | TACTAACTTAGAAACATAAG+TGG | - | chr5.1:65430355-65430374 | MS.gene071223:intron | 25.0% |
| ! | TAGATCATTTGTTCTGTAAT+TGG | - | chr5.1:65430771-65430790 | MS.gene071223:intron | 25.0% |
| ! | TCAATAGAATACCATAACAA+CGG | - | chr5.1:65430307-65430326 | MS.gene071223:intron | 25.0% |
| ! | TCTACAAAACTAGTAATTAG+AGG | + | chr5.1:65431658-65431677 | None:intergenic | 25.0% |
| ! | TGATTGTCGAAACTATAAAA+CGG | + | chr5.1:65431408-65431427 | None:intergenic | 25.0% |
| ! | TGGGTATATCATAATTGTAT+TGG | + | chr5.1:65431444-65431463 | None:intergenic | 25.0% |
| !! | CATAAATGTAATCTGAAATC+TGG | + | chr5.1:65431623-65431642 | None:intergenic | 25.0% |
| !!! | ACTAGAATCCTTAGTTTTAT+AGG | - | chr5.1:65431227-65431246 | MS.gene071223:intron | 25.0% |
| !!! | ACTTATTTTTGTTGCCTTAT+TGG | - | chr5.1:65430589-65430608 | MS.gene071223:intron | 25.0% |
| !!! | ATACTCGGATATTTTTTTGA+TGG | + | chr5.1:65432211-65432230 | None:intergenic | 25.0% |
| !!! | CTAGAATCCTTAGTTTTATA+GGG | - | chr5.1:65431228-65431247 | MS.gene071223:intron | 25.0% |
| !!! | GAACTTGATTTGTTCATTAA+TGG | + | chr5.1:65429631-65429650 | None:intergenic | 25.0% |
| !!! | TAGAATCCTTAGTTTTATAG+GGG | - | chr5.1:65431229-65431248 | MS.gene071223:intron | 25.0% |
| AAAAGGTTCAAACAAAACAC+CGG | + | chr5.1:65429520-65429539 | None:intergenic | 30.0% | |
| AAAGAATCTTGAGGAACAAT+AGG | + | chr5.1:65429573-65429592 | None:intergenic | 30.0% | |
| AAATTCGACGACTTTCTAAT+CGG | + | chr5.1:65430526-65430545 | None:intergenic | 30.0% | |
| AAGAAACATGGTCACAATTA+AGG | + | chr5.1:65431544-65431563 | None:intergenic | 30.0% | |
| ACAAAACTAGTAATTAGAGG+GGG | + | chr5.1:65431655-65431674 | None:intergenic | 30.0% | |
| ACGTTTCCTTAGATTACTAT+TGG | + | chr5.1:65430172-65430191 | None:intergenic | 30.0% | |
| AGAAACATGGTCACAATTAA+GGG | + | chr5.1:65431543-65431562 | None:intergenic | 30.0% | |
| ATTATGATATACCCAAAGGA+AGG | - | chr5.1:65431449-65431468 | MS.gene071223:intron | 30.0% | |
| CATACGTAAAGTTAAGAGAA+AGG | + | chr5.1:65431972-65431991 | None:intergenic | 30.0% | |
| CCTATTATCTAACACTTCAA+AGG | - | chr5.1:65430400-65430419 | MS.gene071223:intron | 30.0% | |
| CTTTGGTTACTAGATCAATA+AGG | - | chr5.1:65430460-65430479 | MS.gene071223:intron | 30.0% | |
| GATTGAACTGAATCAAAAAG+TGG | - | chr5.1:65431010-65431029 | MS.gene071223:intron | 30.0% | |
| GATTGTCGAAACTATAAAAC+GGG | + | chr5.1:65431407-65431426 | None:intergenic | 30.0% | |
| GTATTTCCCCTATAAAACTA+AGG | + | chr5.1:65431238-65431257 | None:intergenic | 30.0% | |
| TCACAAGATAACTACCAATA+AGG | + | chr5.1:65430606-65430625 | None:intergenic | 30.0% | |
| TCACAATTCAGACTCAATTA+AGG | + | chr5.1:65430832-65430851 | None:intergenic | 30.0% | |
| TCTTATCTTTATTGCAGCAA+TGG | - | chr5.1:65431798-65431817 | MS.gene071223:CDS | 30.0% | |
| TGAGAAATTGATGGAATATC+AGG | - | chr5.1:65430009-65430028 | MS.gene071223:intron | 30.0% | |
| TTATGATATACCCAAAGGAA+GGG | - | chr5.1:65431450-65431469 | MS.gene071223:intron | 30.0% | |
| TTGACACCAATAGTAATCTA+AGG | - | chr5.1:65430163-65430182 | MS.gene071223:intron | 30.0% | |
| ! | TCCTTTTTAACCTCTTCAAA+AGG | + | chr5.1:65429537-65429556 | None:intergenic | 30.0% |
| ! | TGTTAATCAACTGTTAGCTT+TGG | - | chr5.1:65430443-65430462 | MS.gene071223:intron | 30.0% |
| !! | AAGACATGTTTGTTGAGTTT+TGG | - | chr5.1:65431879-65431898 | MS.gene071223:intron | 30.0% |
| !! | ACCTTTTGAAGAGGTTAAAA+AGG | - | chr5.1:65429533-65429552 | MS.gene071223:intron | 30.0% |
| !! | CCTTTGAAGTGTTAGATAAT+AGG | + | chr5.1:65430403-65430422 | None:intergenic | 30.0% |
| !! | GTTAACACTTTAAAATGCAG+AGG | + | chr5.1:65432330-65432349 | None:intergenic | 30.0% |
| !! | TTTGTTTGAACCTTTTGAAG+AGG | - | chr5.1:65429524-65429543 | MS.gene071223:intron | 30.0% |
| !! | TTTTAAGGAATCTAGTGAAG+AGG | - | chr5.1:65429973-65429992 | MS.gene071223:intron | 30.0% |
| !! | TTTTTCAGATCACACTTTCT+TGG | + | chr5.1:65431055-65431074 | None:intergenic | 30.0% |
| !!! | AACAATAACCGTGTTTTAAC+CGG | - | chr5.1:65429498-65429517 | MS.gene071223:intron | 30.0% |
| !!! | TATTTTTAGAACAAAAGGGG+TGG | - | chr5.1:65430654-65430673 | MS.gene071223:intron | 30.0% |
| AAACATGTCTTACATTGTGC+AGG | + | chr5.1:65431870-65431889 | None:intergenic | 35.0% | |
| AACACTTCAAAGGTTAACAC+AGG | - | chr5.1:65430410-65430429 | MS.gene071223:intron | 35.0% | |
| AACAGGGAATGACGATATTA+AGG | + | chr5.1:65431497-65431516 | None:intergenic | 35.0% | |
| AATCATTAAGATGTTTGCCC+TGG | - | chr5.1:65431566-65431585 | MS.gene071223:intron | 35.0% | |
| AATCTAGTGAAGAGGAAAGA+GGG | - | chr5.1:65429981-65430000 | MS.gene071223:intron | 35.0% | |
| AATGATAAATCCCCTTCCTT+TGG | + | chr5.1:65431464-65431483 | None:intergenic | 35.0% | |
| AATTCAGACTCAATTAAGGC+AGG | + | chr5.1:65430828-65430847 | None:intergenic | 35.0% | |
| AATTGATGAATTTGTGGGCT+TGG | - | chr5.1:65430924-65430943 | MS.gene071223:intron | 35.0% | |
| ACAAAATATTTCGGATGCCA+GGG | + | chr5.1:65431586-65431605 | None:intergenic | 35.0% | |
| AGACACCTGAAATTACATCA+AGG | + | chr5.1:65432364-65432383 | None:intergenic | 35.0% | |
| ATGATAAATCCCCTTCCTTT+GGG | + | chr5.1:65431463-65431482 | None:intergenic | 35.0% | |
| ATTGTCATTGCCATTGTATC+TGG | + | chr5.1:65431334-65431353 | None:intergenic | 35.0% | |
| CTTGTGTGACATTAATGTCA+CGG | - | chr5.1:65431257-65431276 | MS.gene071223:intron | 35.0% | |
| GAAAATCCAATCATCCAATC+AGG | + | chr5.1:65431758-65431777 | None:intergenic | 35.0% | |
| GCAATGAGTAACACAAGATT+TGG | - | chr5.1:65431716-65431735 | MS.gene071223:intron | 35.0% | |
| GGAAGGGGATTTATCATTTA+TGG | - | chr5.1:65431466-65431485 | MS.gene071223:intron | 35.0% | |
| TAATATCGTCATTCCCTGTT+TGG | - | chr5.1:65431497-65431516 | MS.gene071223:intron | 35.0% | |
| TAATTAATGCCCATGAAGCA+CGG | - | chr5.1:65430103-65430122 | MS.gene071223:intron | 35.0% | |
| TACAAAATATTTCGGATGCC+AGG | + | chr5.1:65431587-65431606 | None:intergenic | 35.0% | |
| TATGACACAGAAACCAAACT+GGG | - | chr5.1:65431167-65431186 | MS.gene071223:intron | 35.0% | |
| TATGATATACCCAAAGGAAG+GGG | - | chr5.1:65431451-65431470 | MS.gene071223:intron | 35.0% | |
| TTGTCATTGCCATTGTATCT+GGG | + | chr5.1:65431333-65431352 | None:intergenic | 35.0% | |
| ! | ACAAAACACCGGTTAAAACA+CGG | + | chr5.1:65429509-65429528 | None:intergenic | 35.0% |
| ! | CTTTACGTATGTTTTTCCAC+AGG | - | chr5.1:65431981-65432000 | MS.gene071223:CDS | 35.0% |
| ! | GTTGTTGTTGTTGTTGTTGT+TGG | - | chr5.1:65429734-65429753 | MS.gene071223:CDS | 35.0% |
| ! | TGTGATGTGTGTGGATTTTA+TGG | - | chr5.1:65430847-65430866 | MS.gene071223:intron | 35.0% |
| ! | TTGATGTAATTTCAGGTGTC+TGG | - | chr5.1:65432363-65432382 | MS.gene071223:CDS | 35.0% |
| ! | TTTGTGGAAAGCGAGTTTTT+GGG | - | chr5.1:65432039-65432058 | MS.gene071223:intron | 35.0% |
| !! | ATCATTACTGATTCCCAGTT+TGG | + | chr5.1:65431183-65431202 | None:intergenic | 35.0% |
| !! | TACTATTGGTGTCAATGTGT+CGG | + | chr5.1:65430158-65430177 | None:intergenic | 35.0% |
| !! | TTTCATCAAGTTGAGATTGC+TGG | - | chr5.1:65431134-65431153 | MS.gene071223:intron | 35.0% |
| !!! | GCACGGTTAGTTTCTTTTTT+TGG | - | chr5.1:65430746-65430765 | MS.gene071223:intron | 35.0% |
| AAAGACCGGTGATGTGAATT+TGG | - | chr5.1:65432011-65432030 | MS.gene071223:CDS | 40.0% | |
| AATGGAACTTGCATTGTCCT+TGG | - | chr5.1:65431816-65431835 | MS.gene071223:intron | 40.0% | |
| ACAATGGCAATGACAATGTG+TGG | - | chr5.1:65431337-65431356 | MS.gene071223:intron | 40.0% | |
| ACATGGTCACAATTAAGGGA+TGG | + | chr5.1:65431539-65431558 | None:intergenic | 40.0% | |
| AGAGATAATGTTGCGCTGAA+AGG | - | chr5.1:65429819-65429838 | MS.gene071223:intron | 40.0% | |
| AGTCTGAATTGTGATGTGTG+TGG | - | chr5.1:65430838-65430857 | MS.gene071223:intron | 40.0% | |
| ATCTAATGTCACCCAATGTG+TGG | + | chr5.1:65431299-65431318 | None:intergenic | 40.0% | |
| ATTAAATCTGGGCCACACAT+TGG | - | chr5.1:65431284-65431303 | MS.gene071223:intron | 40.0% | |
| CTATGACACAGAAACCAAAC+TGG | - | chr5.1:65431166-65431185 | MS.gene071223:intron | 40.0% | |
| CTGGTATCCAATTCCAAACA+GGG | + | chr5.1:65431513-65431532 | None:intergenic | 40.0% | |
| GAATCTAGTGAAGAGGAAAG+AGG | - | chr5.1:65429980-65429999 | MS.gene071223:intron | 40.0% | |
| GAGTTTGATCATGCCGATAA+GGG | - | chr5.1:65430714-65430733 | MS.gene071223:intron | 40.0% | |
| GCATGATCAAACTCAGAAAG+CGG | + | chr5.1:65430708-65430727 | None:intergenic | 40.0% | |
| GCTTCAACGTGGAAGTAAAT+TGG | - | chr5.1:65429443-65429462 | MS.gene071223:intron | 40.0% | |
| GGCTTCCTTGATGTAATTTC+AGG | - | chr5.1:65432356-65432375 | MS.gene071223:CDS | 40.0% | |
| GTACTACCTGATTGGATGAT+TGG | - | chr5.1:65431749-65431768 | MS.gene071223:intron | 40.0% | |
| GTCACATTGTACTACCTGAT+TGG | - | chr5.1:65431741-65431760 | MS.gene071223:intron | 40.0% | |
| GTCACGGTGACATTAAATCT+GGG | - | chr5.1:65431273-65431292 | MS.gene071223:intron | 40.0% | |
| GTCTTACATTGTGCAGGTTA+AGG | + | chr5.1:65431864-65431883 | None:intergenic | 40.0% | |
| GTGACATTAGATGTGTTGTG+TGG | - | chr5.1:65431307-65431326 | MS.gene071223:intron | 40.0% | |
| GTTAATGCAGTTCGTACACA+TGG | + | chr5.1:65430504-65430523 | None:intergenic | 40.0% | |
| TCTTAGCTGAGCAACATACT+CGG | + | chr5.1:65432226-65432245 | None:intergenic | 40.0% | |
| TGACGAGCTAAAGAATCTTG+AGG | + | chr5.1:65429582-65429601 | None:intergenic | 40.0% | |
| TGAGTTTGATCATGCCGATA+AGG | - | chr5.1:65430713-65430732 | MS.gene071223:intron | 40.0% | |
| TGTCACGGTGACATTAAATC+TGG | - | chr5.1:65431272-65431291 | MS.gene071223:intron | 40.0% | |
| TGTCGAAACTATAAAACGGG+TGG | + | chr5.1:65431404-65431423 | None:intergenic | 40.0% | |
| TGTGAATTTGGCAGACTTTG+TGG | - | chr5.1:65432023-65432042 | MS.gene071223:intron | 40.0% | |
| TTAAATCTGGGCCACACATT+GGG | - | chr5.1:65431285-65431304 | MS.gene071223:intron | 40.0% | |
| TTACTTCCACGTTGAAGCAA+CGG | + | chr5.1:65429441-65429460 | None:intergenic | 40.0% | |
| ! | CTCATTTGTTAGCTTCTCCA+AGG | + | chr5.1:65431836-65431855 | None:intergenic | 40.0% |
| ! | CTTTGTGGAAAGCGAGTTTT+TGG | - | chr5.1:65432038-65432057 | MS.gene071223:intron | 40.0% |
| !! | TTTCATCAAGTTGAGCTTGC+TGG | - | chr5.1:65431105-65431124 | MS.gene071223:CDS | 40.0% |
| !!! | AGTTTTGGTGTCTGGTTTAC+GGG | - | chr5.1:65431894-65431913 | MS.gene071223:intron | 40.0% |
| !!! | GAGTTTTGGTGTCTGGTTTA+CGG | - | chr5.1:65431893-65431912 | MS.gene071223:intron | 40.0% |
| !!! | GTTTGTTGAGTTTTGGTGTC+TGG | - | chr5.1:65431886-65431905 | MS.gene071223:intron | 40.0% |
| AAACTCTGACACTTGGACAC+AGG | - | chr5.1:65430195-65430214 | MS.gene071223:intron | 45.0% | |
| ACGTCGTAAACTCTGACACT+TGG | - | chr5.1:65430188-65430207 | MS.gene071223:intron | 45.0% | |
| AGAAGAGTTGGCAAAGGACA+TGG | - | chr5.1:65432243-65432262 | MS.gene071223:CDS | 45.0% | |
| AGGGCATGCTGAGAAATTGA+TGG | - | chr5.1:65430000-65430019 | MS.gene071223:intron | 45.0% | |
| ATGAAGCACGGACACATACA+CGG | - | chr5.1:65430115-65430134 | MS.gene071223:intron | 45.0% | |
| ATTCACATCACCGGTCTTTG+AGG | + | chr5.1:65432010-65432029 | None:intergenic | 45.0% | |
| CAGCTAAGAAGAGTTGGCAA+AGG | - | chr5.1:65432237-65432256 | MS.gene071223:CDS | 45.0% | |
| CCTGGTATCCAATTCCAAAC+AGG | + | chr5.1:65431514-65431533 | None:intergenic | 45.0% | |
| CTATAAAACGGGTGGCACTT+TGG | + | chr5.1:65431396-65431415 | None:intergenic | 45.0% | |
| GGTTATTGGGCTTGTGCTAT+TGG | + | chr5.1:65430382-65430401 | None:intergenic | 45.0% | |
| GTCTGCCAAATTCACATCAC+CGG | + | chr5.1:65432019-65432038 | None:intergenic | 45.0% | |
| GTTGCTCAGCTAAGAAGAGT+TGG | - | chr5.1:65432231-65432250 | MS.gene071223:CDS | 45.0% | |
| TCGTAGCAGAAACAGCGATT+CGG | + | chr5.1:65429470-65429489 | None:intergenic | 45.0% | |
| TGTATGTGTCCGTGCTTCAT+GGG | + | chr5.1:65430115-65430134 | None:intergenic | 45.0% | |
| TTGATTCCGTTGCTTCAACG+TGG | - | chr5.1:65429432-65429451 | MS.gene071223:intron | 45.0% | |
| ! | CCTGTTTGGAATTGGATACC+AGG | - | chr5.1:65431511-65431530 | MS.gene071223:intron | 45.0% |
| ! | CGGAATCAAACGCGTGTTTT+CGG | + | chr5.1:65429421-65429440 | None:intergenic | 45.0% |
| ! | CGTCATTCCCTGTTTGGAAT+TGG | - | chr5.1:65431503-65431522 | MS.gene071223:intron | 45.0% |
| !! | ATCGCTGTTTCTGCTACGAA+AGG | - | chr5.1:65429471-65429490 | MS.gene071223:intron | 45.0% |
| !! | GTTGTTGGTGTTGAACAGTG+TGG | - | chr5.1:65429749-65429768 | MS.gene071223:CDS | 45.0% |
| !!! | AAGCGAGTTTTTGGGTGAAC+AGG | - | chr5.1:65432047-65432066 | MS.gene071223:intron | 45.0% |
| !!! | TTGATTTATTTAATTAATTT+TGG | - | chr5.1:65429705-65429724 | MS.gene071223:intron | 5.0% |
| AATGTGTGGCCCAGATGCAA+TGG | - | chr5.1:65431351-65431370 | MS.gene071223:intron | 50.0% | |
| CACAATTAAGGGATGGTGCC+TGG | + | chr5.1:65431532-65431551 | None:intergenic | 50.0% | |
| GATAAGGGTGACGCTTTGCA+CGG | - | chr5.1:65430729-65430748 | MS.gene071223:intron | 50.0% | |
| GTGTATGTGTCCGTGCTTCA+TGG | + | chr5.1:65430116-65430135 | None:intergenic | 50.0% | |
| GTTGTGTGGCCCAGATACAA+TGG | - | chr5.1:65431321-65431340 | MS.gene071223:intron | 50.0% | |
| ! | GTGCAAAGCGTCACCCTTAT+CGG | + | chr5.1:65430730-65430749 | None:intergenic | 50.0% |
| CCACAGGTTGCCTCAAAGAC+CGG | - | chr5.1:65431997-65432016 | MS.gene071223:CDS | 55.0% | |
| ! | GTCACCGTGCCATTGCATCT+GGG | + | chr5.1:65431363-65431382 | None:intergenic | 55.0% |
| ! | TGTCACCGTGCCATTGCATC+TGG | + | chr5.1:65431364-65431383 | None:intergenic | 55.0% |
| GTGGCCCAGATGCAATGGCA+CGG | - | chr5.1:65431356-65431375 | MS.gene071223:intron | 60.0% | |
| !! | CCGGTCTTTGAGGCAACCTG+TGG | + | chr5.1:65432000-65432019 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 65429372 | 65432427 | 65429372 | ID=MS.gene071223 |
| chr5.1 | mRNA | 65429372 | 65432427 | 65429372 | ID=MS.gene071223.t1;Parent=MS.gene071223 |
| chr5.1 | exon | 65432153 | 65432427 | 65432153 | ID=MS.gene071223.t1.exon1;Parent=MS.gene071223.t1 |
| chr5.1 | CDS | 65432153 | 65432427 | 65432153 | ID=cds.MS.gene071223.t1;Parent=MS.gene071223.t1 |
| chr5.1 | exon | 65431949 | 65432032 | 65431949 | ID=MS.gene071223.t1.exon2;Parent=MS.gene071223.t1 |
| chr5.1 | CDS | 65431949 | 65432032 | 65431949 | ID=cds.MS.gene071223.t1;Parent=MS.gene071223.t1 |
| chr5.1 | exon | 65431769 | 65431829 | 65431769 | ID=MS.gene071223.t1.exon3;Parent=MS.gene071223.t1 |
| chr5.1 | CDS | 65431769 | 65431829 | 65431769 | ID=cds.MS.gene071223.t1;Parent=MS.gene071223.t1 |
| chr5.1 | exon | 65431049 | 65431136 | 65431049 | ID=MS.gene071223.t1.exon4;Parent=MS.gene071223.t1 |
| chr5.1 | CDS | 65431049 | 65431136 | 65431049 | ID=cds.MS.gene071223.t1;Parent=MS.gene071223.t1 |
| chr5.1 | exon | 65429923 | 65429984 | 65429923 | ID=MS.gene071223.t1.exon5;Parent=MS.gene071223.t1 |
| chr5.1 | CDS | 65429923 | 65429984 | 65429923 | ID=cds.MS.gene071223.t1;Parent=MS.gene071223.t1 |
| chr5.1 | exon | 65429731 | 65429796 | 65429731 | ID=MS.gene071223.t1.exon6;Parent=MS.gene071223.t1 |
| chr5.1 | CDS | 65429731 | 65429796 | 65429731 | ID=cds.MS.gene071223.t1;Parent=MS.gene071223.t1 |
| chr5.1 | exon | 65429535 | 65429598 | 65429535 | ID=MS.gene071223.t1.exon7;Parent=MS.gene071223.t1 |
| chr5.1 | CDS | 65429535 | 65429598 | 65429535 | ID=cds.MS.gene071223.t1;Parent=MS.gene071223.t1 |
| chr5.1 | exon | 65429372 | 65429421 | 65429372 | ID=MS.gene071223.t1.exon8;Parent=MS.gene071223.t1 |
| chr5.1 | CDS | 65429372 | 65429421 | 65429372 | ID=cds.MS.gene071223.t1;Parent=MS.gene071223.t1 |
| Gene Sequence |
| Protein sequence |
