Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29686.t1 | XP_003616685.1 | 98.4 | 249 | 4 | 0 | 1 | 249 | 1 | 249 | 1.50E-131 | 478.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29686.t1 | Q41709 | 78.9 | 247 | 48 | 2 | 1 | 245 | 1 | 245 | 8.9e-104 | 377.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29686.t1 | G7K283 | 98.4 | 249 | 4 | 0 | 1 | 249 | 1 | 249 | 1.1e-131 | 478.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene29686 | 0.816861 | 4.45E-52 | -1.69E-46 |
| MS.gene050426 | MS.gene29686 | -0.809448 | 1.88E-50 | -1.69E-46 |
| MS.gene050642 | MS.gene29686 | 0.820944 | 5.25E-53 | -1.69E-46 |
| MS.gene051983 | MS.gene29686 | 0.835047 | 2.11E-56 | -1.69E-46 |
| MS.gene052176 | MS.gene29686 | 0.8042 | 2.42E-49 | -1.69E-46 |
| MS.gene052309 | MS.gene29686 | -0.809952 | 1.47E-50 | -1.69E-46 |
| MS.gene053330 | MS.gene29686 | 0.808187 | 3.50E-50 | -1.69E-46 |
| MS.gene05553 | MS.gene29686 | 0.815456 | 9.16E-52 | -1.69E-46 |
| MS.gene056087 | MS.gene29686 | 0.831977 | 1.23E-55 | -1.69E-46 |
| MS.gene056305 | MS.gene29686 | 0.807296 | 5.42E-50 | -1.69E-46 |
| MS.gene056979 | MS.gene29686 | 0.824028 | 1.01E-53 | -1.69E-46 |
| MS.gene058142 | MS.gene29686 | 0.837131 | 6.23E-57 | -1.69E-46 |
| MS.gene059247 | MS.gene29686 | 0.829399 | 5.26E-55 | -1.69E-46 |
| MS.gene059285 | MS.gene29686 | 0.806151 | 9.46E-50 | -1.69E-46 |
| MS.gene061114 | MS.gene29686 | -0.821035 | 5.00E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene071032 | MS.gene29686 | PPI |
| MS.gene93375 | MS.gene29686 | PPI |
| MS.gene95674 | MS.gene29686 | PPI |
| MS.gene33707 | MS.gene29686 | PPI |
| MS.gene29686 | MS.gene99504 | PPI |
| MS.gene069003 | MS.gene29686 | PPI |
| MS.gene052792 | MS.gene29686 | PPI |
| MS.gene33454 | MS.gene29686 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29686.t1 | MTR_5g083170 | 98.394 | 249 | 4 | 0 | 1 | 249 | 1 | 249 | 0.0 | 503 |
| MS.gene29686.t1 | MTR_5g083170 | 97.906 | 191 | 4 | 0 | 1 | 191 | 1 | 191 | 1.27e-137 | 385 |
| MS.gene29686.t1 | MTR_7g069980 | 75.622 | 201 | 49 | 0 | 48 | 248 | 55 | 255 | 5.63e-107 | 310 |
| MS.gene29686.t1 | MTR_4g014540 | 77.157 | 197 | 45 | 0 | 48 | 244 | 54 | 250 | 2.73e-106 | 308 |
| MS.gene29686.t1 | MTR_5g072560 | 73.077 | 130 | 35 | 0 | 120 | 249 | 18 | 147 | 1.42e-66 | 203 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29686.t1 | AT3G11050 | 72.581 | 248 | 57 | 4 | 2 | 245 | 11 | 251 | 3.50e-124 | 353 |
| MS.gene29686.t1 | AT2G40300 | 80.583 | 206 | 39 | 1 | 38 | 243 | 53 | 257 | 8.42e-118 | 337 |
| MS.gene29686.t1 | AT5G01600 | 65.863 | 249 | 69 | 2 | 12 | 244 | 7 | 255 | 1.70e-114 | 328 |
| MS.gene29686.t1 | AT3G56090 | 79.798 | 198 | 40 | 0 | 50 | 247 | 62 | 259 | 7.83e-112 | 322 |
| MS.gene29686.t1 | AT3G61010 | 74.000 | 50 | 13 | 0 | 91 | 140 | 369 | 418 | 7.16e-18 | 82.4 |
| MS.gene29686.t1 | AT3G61010 | 74.000 | 50 | 13 | 0 | 91 | 140 | 369 | 418 | 7.16e-18 | 82.4 |
Find 35 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACTTGATTTGTTCATTAA+TGG | 0.196228 | 5.3:+67405579 | None:intergenic |
| GCTTCAACGTGGAAGTAAAT+TGG | 0.267790 | 5.3:-67405764 | MS.gene29686:CDS |
| AAAGACCGGTGATGTGAATT+TGG | 0.292838 | 5.3:-67403361 | MS.gene29686:CDS |
| TTGATGTAATTTCAGGTGTC+TGG | 0.348601 | 5.3:-67403009 | MS.gene29686:intron |
| GTGCAAAGCGTCACCCTTAT+CGG | 0.353274 | 5.3:+67404478 | None:intergenic |
| TGAGAAATTGATGGAATATC+AGG | 0.354314 | 5.3:-67405201 | MS.gene29686:intron |
| GTCTTACATTGTGCAGGTTA+AGG | 0.377061 | 5.3:+67403511 | None:intergenic |
| AAAGAATCTTGAGGAACAAT+AGG | 0.383929 | 5.3:+67405637 | None:intergenic |
| TGTGAATTTGGCAGACTTTG+TGG | 0.418668 | 5.3:-67403349 | MS.gene29686:CDS |
| TGAGTTTGATCATGCCGATA+AGG | 0.436295 | 5.3:-67404492 | MS.gene29686:CDS |
| GAGTTTGATCATGCCGATAA+GGG | 0.461004 | 5.3:-67404491 | MS.gene29686:CDS |
| CCACAGGTTGCCTCAAAGAC+CGG | 0.468429 | 5.3:-67403375 | MS.gene29686:intron |
| ATTCACATCACCGGTCTTTG+AGG | 0.489139 | 5.3:+67403365 | None:intergenic |
| AGGGCATGCTGAGAAATTGA+TGG | 0.491044 | 5.3:-67405210 | MS.gene29686:CDS |
| AATGGAACTTGCATTGTCCT+TGG | 0.503326 | 5.3:-67403556 | MS.gene29686:CDS |
| AAACATGTCTTACATTGTGC+AGG | 0.531800 | 5.3:+67403505 | None:intergenic |
| TACAGCAGCTTTGAGAAGCA+TGG | 0.535205 | 5.3:+67405837 | None:intergenic |
| CTCATTTGTTAGCTTCTCCA+AGG | 0.537044 | 5.3:+67403539 | None:intergenic |
| TCGTAGCAGAAACAGCGATT+CGG | 0.538135 | 5.3:+67405740 | None:intergenic |
| AGAGATAATGTTGCGCTGAA+AGG | 0.541910 | 5.3:-67405391 | MS.gene29686:CDS |
| GTCTGCCAAATTCACATCAC+CGG | 0.543362 | 5.3:+67403356 | None:intergenic |
| TTACTTCCACGTTGAAGCAA+CGG | 0.548255 | 5.3:+67405769 | None:intergenic |
| ATCGCTGTTTCTGCTACGAA+AGG | 0.563174 | 5.3:-67405736 | MS.gene29686:CDS |
| GTTGCTCAGCTAAGAAGAGT+TGG | 0.565145 | 5.3:-67403141 | MS.gene29686:CDS |
| AGAAGAGTTGGCAAAGGACA+TGG | 0.569821 | 5.3:-67403129 | MS.gene29686:intron |
| GAATCTAGTGAAGAGGAAAG+AGG | 0.571340 | 5.3:-67405230 | MS.gene29686:CDS |
| GATAAGGGTGACGCTTTGCA+CGG | 0.580509 | 5.3:-67404476 | MS.gene29686:intron |
| AATCTAGTGAAGAGGAAAGA+GGG | 0.584769 | 5.3:-67405229 | MS.gene29686:CDS |
| TGACGAGCTAAAGAATCTTG+AGG | 0.605682 | 5.3:+67405628 | None:intergenic |
| TCTTAGCTGAGCAACATACT+CGG | 0.619174 | 5.3:+67403149 | None:intergenic |
| ACAAAACACCGGTTAAAACA+CGG | 0.624694 | 5.3:+67405701 | None:intergenic |
| AAAAGGTTCAAACAAAACAC+CGG | 0.645626 | 5.3:+67405690 | None:intergenic |
| CAGCTAAGAAGAGTTGGCAA+AGG | 0.650592 | 5.3:-67403135 | MS.gene29686:CDS |
| TTGATTCCGTTGCTTCAACG+TGG | 0.658320 | 5.3:-67405775 | MS.gene29686:CDS |
| GCATGATCAAACTCAGAGAG+CGG | 0.671716 | 5.3:+67404500 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTACTTTACAAAATATTT+CGG | + | chr5.3:67405025-67405044 | None:intergenic | 10.0% |
| !!! | AATTTGACTATTTTTTAAAT+CGG | - | chr5.3:67403672-67403691 | MS.gene29686:intron | 10.0% |
| !!! | TGTTTTAATTTATTTTGTTT+TGG | - | chr5.3:67403454-67403473 | MS.gene29686:intron | 10.0% |
| !! | ATAGTCAAATTTCATTAAAT+TGG | + | chr5.3:67403663-67403682 | None:intergenic | 15.0% |
| !! | TAGTCAAATTTCATTAAATT+GGG | + | chr5.3:67403662-67403681 | None:intergenic | 15.0% |
| !! | TATATTACTCTAACAAAAAA+TGG | - | chr5.3:67403868-67403887 | MS.gene29686:intron | 15.0% |
| !!! | ATCATTATTTTTCTATTCAT+AGG | - | chr5.3:67405609-67405628 | MS.gene29686:CDS | 15.0% |
| !!! | GTTTTATTTTTAGAACAAAA+GGG | - | chr5.3:67404247-67404266 | MS.gene29686:intron | 15.0% |
| !!! | TGTTTTATTTTTAGAACAAA+AGG | - | chr5.3:67404246-67404265 | MS.gene29686:intron | 15.0% |
| !!! | TTTTATTTTTAGAACAAAAG+GGG | - | chr5.3:67404248-67404267 | MS.gene29686:intron | 15.0% |
| !!! | TTTTGTTTATAGGTTTTTTA+AGG | - | chr5.3:67403550-67403569 | MS.gene29686:CDS | 15.0% |
| !!! | TTTTGTTTTGGTTTTAATTT+TGG | - | chr5.3:67403466-67403485 | MS.gene29686:intron | 15.0% |
| !! | AAGATAATTGATGAATTTGT+GGG | - | chr5.3:67404516-67404535 | MS.gene29686:CDS | 20.0% |
| !! | CCCTTAAACTAAAAATAAAA+CGG | + | chr5.3:67405538-67405557 | None:intergenic | 20.0% |
| !! | CTAAAAATAAAACGGAAATA+TGG | + | chr5.3:67405530-67405549 | None:intergenic | 20.0% |
| !! | GGTATATAATAAATCACAAA+AGG | - | chr5.3:67403920-67403939 | MS.gene29686:intron | 20.0% |
| !! | TTTATTATATACCGTTGTTA+TGG | + | chr5.3:67403913-67403932 | None:intergenic | 20.0% |
| !!! | ATTATTTTTCTATTCATAGG+TGG | - | chr5.3:67405612-67405631 | MS.gene29686:CDS | 20.0% |
| !!! | CCGTTTTATTTTTAGTTTAA+GGG | - | chr5.3:67405535-67405554 | MS.gene29686:intron | 20.0% |
| !!! | GATTATGTTGTTTTGTTTAT+AGG | - | chr5.3:67403540-67403559 | MS.gene29686:CDS | 20.0% |
| !!! | TCCGTTTTATTTTTAGTTTA+AGG | - | chr5.3:67405534-67405553 | MS.gene29686:intron | 20.0% |
| !!! | TTTTAAAGTGTTAACTTATG+TGG | - | chr5.3:67405765-67405784 | MS.gene29686:CDS | 20.0% |
| ! | ACTTAACTTAGAAACATAAG+TGG | - | chr5.3:67403952-67403971 | MS.gene29686:intron | 25.0% |
| ! | AGTGTTAGATAATAGGTTAT+TGG | + | chr5.3:67403993-67404012 | None:intergenic | 25.0% |
| ! | AGTTAGAAAAATAATGTGCA+TGG | + | chr5.3:67405719-67405738 | None:intergenic | 25.0% |
| ! | CTACAAAACTAGTAATTAGA+GGG | + | chr5.3:67405087-67405106 | None:intergenic | 25.0% |
| ! | CTTAATGATTACAAGAAACA+TGG | + | chr5.3:67404986-67405005 | None:intergenic | 25.0% |
| ! | GAAGATAATTGATGAATTTG+TGG | - | chr5.3:67404515-67404534 | MS.gene29686:CDS | 25.0% |
| ! | GTGTTAGATAATAGGTTATT+GGG | + | chr5.3:67403992-67404011 | None:intergenic | 25.0% |
| ! | TACAAAACTAGTAATTAGAG+GGG | + | chr5.3:67405086-67405105 | None:intergenic | 25.0% |
| ! | TACAATTATGATATACCCAA+AGG | - | chr5.3:67404875-67404894 | MS.gene29686:intron | 25.0% |
| ! | TAGATCATTTGTTCTGTAAT+TGG | - | chr5.3:67404368-67404387 | MS.gene29686:intron | 25.0% |
| ! | TCAATAGAATACCATAACAA+CGG | - | chr5.3:67403899-67403918 | MS.gene29686:intron | 25.0% |
| ! | TCTACAAAACTAGTAATTAG+AGG | + | chr5.3:67405088-67405107 | None:intergenic | 25.0% |
| ! | TGGGTATATCATAATTGTAT+TGG | + | chr5.3:67404874-67404893 | None:intergenic | 25.0% |
| ! | TTGTCGAAACTATAAAACTA+AGG | + | chr5.3:67404835-67404854 | None:intergenic | 25.0% |
| !! | CATAAATGTAATCTGAAATC+TGG | + | chr5.3:67405053-67405072 | None:intergenic | 25.0% |
| !!! | ACCTTTTGAAGAAGTTAAAA+AGG | - | chr5.3:67403128-67403147 | MS.gene29686:intron | 25.0% |
| !!! | ACTTATTTTTGTTGCCTTAT+TGG | - | chr5.3:67404186-67404205 | MS.gene29686:intron | 25.0% |
| !!! | ATACTCGGATATTTTTTTGA+TGG | + | chr5.3:67405641-67405660 | None:intergenic | 25.0% |
| !!! | ATTTTTGTTGTTGTTGTTGT+TGG | - | chr5.3:67403326-67403345 | MS.gene29686:CDS | 25.0% |
| !!! | GAACTTGATTTGTTCATTAA+TGG | + | chr5.3:67403226-67403245 | None:intergenic | 25.0% |
| !!! | TCCTTTTTAACTTCTTCAAA+AGG | + | chr5.3:67403132-67403151 | None:intergenic | 25.0% |
| AAAAGGTTCAAACAAAACAC+CGG | + | chr5.3:67403115-67403134 | None:intergenic | 30.0% | |
| AAAGAATCTTGAGGAACAAT+AGG | + | chr5.3:67403168-67403187 | None:intergenic | 30.0% | |
| AAATTCGACGACTTTCTAAT+CGG | + | chr5.3:67404123-67404142 | None:intergenic | 30.0% | |
| AAGAAACATGGTCACAATTA+AGG | + | chr5.3:67404974-67404993 | None:intergenic | 30.0% | |
| ACAAAACTAGTAATTAGAGG+GGG | + | chr5.3:67405085-67405104 | None:intergenic | 30.0% | |
| ACGTTTCCTTAGATTACTAT+TGG | + | chr5.3:67403764-67403783 | None:intergenic | 30.0% | |
| AGAAACATGGTCACAATTAA+GGG | + | chr5.3:67404973-67404992 | None:intergenic | 30.0% | |
| ATTATGATATACCCAAAGGA+AGG | - | chr5.3:67404879-67404898 | MS.gene29686:intron | 30.0% | |
| CATACGTAAAGTTAAGAGAA+AGG | + | chr5.3:67405402-67405421 | None:intergenic | 30.0% | |
| CCTATTATCTAACACTTCAA+AGG | - | chr5.3:67403997-67404016 | MS.gene29686:intron | 30.0% | |
| CTTTGGTTACTAGATCAATA+AGG | - | chr5.3:67404057-67404076 | MS.gene29686:intron | 30.0% | |
| GATTGAACTGAATCAAAAAG+TGG | - | chr5.3:67404607-67404626 | MS.gene29686:intron | 30.0% | |
| TCACAAGATAACTACCAATA+AGG | + | chr5.3:67404203-67404222 | None:intergenic | 30.0% | |
| TCACAATTCAGACTCAATTA+AGG | + | chr5.3:67404429-67404448 | None:intergenic | 30.0% | |
| TCTTATCTTTATTGCAGCAA+TGG | - | chr5.3:67405228-67405247 | MS.gene29686:CDS | 30.0% | |
| TGAGAAATTGATGGAATATC+AGG | - | chr5.3:67403601-67403620 | MS.gene29686:intron | 30.0% | |
| TTATGATATACCCAAAGGAA+GGG | - | chr5.3:67404880-67404899 | MS.gene29686:intron | 30.0% | |
| TTGACACCAATAGTAATCTA+AGG | - | chr5.3:67403755-67403774 | MS.gene29686:intron | 30.0% | |
| ! | AATCATTAAGATGTTTTCCC+TGG | - | chr5.3:67404996-67405015 | MS.gene29686:intron | 30.0% |
| ! | TGTTAATCAACTGTTAGCTT+TGG | - | chr5.3:67404040-67404059 | MS.gene29686:intron | 30.0% |
| !! | AAGACATGTTTGTTGAGTTT+TGG | - | chr5.3:67405309-67405328 | MS.gene29686:intron | 30.0% |
| !! | CCTTTGAAGTGTTAGATAAT+AGG | + | chr5.3:67404000-67404019 | None:intergenic | 30.0% |
| !! | GTTAACACTTTAAAATGCAG+AGG | + | chr5.3:67405760-67405779 | None:intergenic | 30.0% |
| !! | TTTTAAGGAATCTAGTGAAG+AGG | - | chr5.3:67403565-67403584 | MS.gene29686:intron | 30.0% |
| !!! | AACAATAACCGTGTTTTAAC+CGG | - | chr5.3:67403093-67403112 | MS.gene29686:intron | 30.0% |
| !!! | TATTTTTAGAACAAAAGGGG+TGG | - | chr5.3:67404251-67404270 | MS.gene29686:intron | 30.0% |
| AAACATGTCTTACATTGTGC+AGG | + | chr5.3:67405300-67405319 | None:intergenic | 35.0% | |
| AACACTTCAAAGGTTAACAC+AGG | - | chr5.3:67404007-67404026 | MS.gene29686:intron | 35.0% | |
| AACAGGGAATCACGATATTA+AGG | + | chr5.3:67404927-67404946 | None:intergenic | 35.0% | |
| AATCTAGTGAAGAGGAAAGA+GGG | - | chr5.3:67403573-67403592 | MS.gene29686:intron | 35.0% | |
| AATGATAAATCCCCTTCCTT+TGG | + | chr5.3:67404894-67404913 | None:intergenic | 35.0% | |
| AATTCAGACTCAATTAAGGC+AGG | + | chr5.3:67404425-67404444 | None:intergenic | 35.0% | |
| AATTGATGAATTTGTGGGCT+TGG | - | chr5.3:67404521-67404540 | MS.gene29686:CDS | 35.0% | |
| ACAAAATATTTCGGATGCCA+GGG | + | chr5.3:67405016-67405035 | None:intergenic | 35.0% | |
| AGACACCTGAAATTACATCA+AGG | + | chr5.3:67405794-67405813 | None:intergenic | 35.0% | |
| ATGATAAATCCCCTTCCTTT+GGG | + | chr5.3:67404893-67404912 | None:intergenic | 35.0% | |
| GAAAATCCAATCATCCAATC+AGG | + | chr5.3:67405188-67405207 | None:intergenic | 35.0% | |
| GGAAGGGGATTTATCATTTA+TGG | - | chr5.3:67404896-67404915 | MS.gene29686:intron | 35.0% | |
| TAATATCGTGATTCCCTGTT+TGG | - | chr5.3:67404927-67404946 | MS.gene29686:intron | 35.0% | |
| TAATTAATGCCCATGAAGCA+CGG | - | chr5.3:67403695-67403714 | MS.gene29686:intron | 35.0% | |
| TACAAAATATTTCGGATGCC+AGG | + | chr5.3:67405017-67405036 | None:intergenic | 35.0% | |
| TATGACACAGAAACCAAACT+GGG | - | chr5.3:67404764-67404783 | MS.gene29686:intron | 35.0% | |
| TATGATATACCCAAAGGAAG+GGG | - | chr5.3:67404881-67404900 | MS.gene29686:intron | 35.0% | |
| ! | ACAAAACACCGGTTAAAACA+CGG | + | chr5.3:67403104-67403123 | None:intergenic | 35.0% |
| ! | CTTTACGTATGTTTTTCCAC+AGG | - | chr5.3:67405411-67405430 | MS.gene29686:CDS | 35.0% |
| ! | TGTGATGTGTGTGGATTTTA+TGG | - | chr5.3:67404444-67404463 | MS.gene29686:intron | 35.0% |
| ! | TTGATGTAATTTCAGGTGTC+TGG | - | chr5.3:67405793-67405812 | MS.gene29686:CDS | 35.0% |
| ! | TTTGTGGAAAGCGAGTTTTT+GGG | - | chr5.3:67405469-67405488 | MS.gene29686:intron | 35.0% |
| !! | ATCATTACTGATTCCCAGTT+TGG | + | chr5.3:67404780-67404799 | None:intergenic | 35.0% |
| !! | TACTATTGGTGTCAATGTGT+CGG | + | chr5.3:67403750-67403769 | None:intergenic | 35.0% |
| !! | TTTCATCAAGTTGAGATTGC+TGG | - | chr5.3:67404731-67404750 | MS.gene29686:intron | 35.0% |
| !! | TTTTTCAGATCACGCTTTCT+TGG | + | chr5.3:67404652-67404671 | None:intergenic | 35.0% |
| !!! | GCACGGTTAGTTTCTTTTTT+TGG | - | chr5.3:67404343-67404362 | MS.gene29686:intron | 35.0% |
| AAAGACCGGTGATGTGAATT+TGG | - | chr5.3:67405441-67405460 | MS.gene29686:CDS | 40.0% | |
| AATGGAACTTGCATTGTCCT+TGG | - | chr5.3:67405246-67405265 | MS.gene29686:intron | 40.0% | |
| ACATGGTCACAATTAAGGGA+TGG | + | chr5.3:67404969-67404988 | None:intergenic | 40.0% | |
| AGAGATAATGTTGCGCTGAA+AGG | - | chr5.3:67403411-67403430 | MS.gene29686:intron | 40.0% | |
| AGTCTGAATTGTGATGTGTG+TGG | - | chr5.3:67404435-67404454 | MS.gene29686:intron | 40.0% | |
| CTATGACACAGAAACCAAAC+TGG | - | chr5.3:67404763-67404782 | MS.gene29686:intron | 40.0% | |
| CTGGTATCCAATTCCAAACA+GGG | + | chr5.3:67404943-67404962 | None:intergenic | 40.0% | |
| GAATCTAGTGAAGAGGAAAG+AGG | - | chr5.3:67403572-67403591 | MS.gene29686:intron | 40.0% | |
| GAGTTTGATCATGCCGATAA+GGG | - | chr5.3:67404311-67404330 | MS.gene29686:intron | 40.0% | |
| GCAATGAGTAACACAAGATG+TGG | - | chr5.3:67405146-67405165 | MS.gene29686:intron | 40.0% | |
| GCTTCAACGTGGAAGTAAAT+TGG | - | chr5.3:67403038-67403057 | MS.gene29686:intron | 40.0% | |
| GGCTTCCTTGATGTAATTTC+AGG | - | chr5.3:67405786-67405805 | MS.gene29686:CDS | 40.0% | |
| GTACTACCTGATTGGATGAT+TGG | - | chr5.3:67405179-67405198 | MS.gene29686:intron | 40.0% | |
| GTCACATTGTACTACCTGAT+TGG | - | chr5.3:67405171-67405190 | MS.gene29686:intron | 40.0% | |
| GTCTTACATTGTGCAGGTTA+AGG | + | chr5.3:67405294-67405313 | None:intergenic | 40.0% | |
| GTTAATGCAGTTCGTACACA+TGG | + | chr5.3:67404101-67404120 | None:intergenic | 40.0% | |
| TCTTAGCTGAGCAACATACT+CGG | + | chr5.3:67405656-67405675 | None:intergenic | 40.0% | |
| TGACGAGCTAAAGAATCTTG+AGG | + | chr5.3:67403177-67403196 | None:intergenic | 40.0% | |
| TGAGTTTGATCATGCCGATA+AGG | - | chr5.3:67404310-67404329 | MS.gene29686:intron | 40.0% | |
| TGTGAATTTGGCAGACTTTG+TGG | - | chr5.3:67405453-67405472 | MS.gene29686:intron | 40.0% | |
| TTACTTCCACGTTGAAGCAA+CGG | + | chr5.3:67403036-67403055 | None:intergenic | 40.0% | |
| ! | CTCATTTGTTAGCTTCTCCA+AGG | + | chr5.3:67405266-67405285 | None:intergenic | 40.0% |
| ! | CTTTGTGGAAAGCGAGTTTT+TGG | - | chr5.3:67405468-67405487 | MS.gene29686:intron | 40.0% |
| !! | TTTCATCAAGTTGAGCTTGC+TGG | - | chr5.3:67404702-67404721 | MS.gene29686:intron | 40.0% |
| !!! | AGTTTTGGTGTCTGGTTTAC+GGG | - | chr5.3:67405324-67405343 | MS.gene29686:intron | 40.0% |
| !!! | GAGTTTTGGTGTCTGGTTTA+CGG | - | chr5.3:67405323-67405342 | MS.gene29686:intron | 40.0% |
| !!! | GTTTGTTGAGTTTTGGTGTC+TGG | - | chr5.3:67405316-67405335 | MS.gene29686:intron | 40.0% |
| AAACTCTGACACTTGGACAC+AGG | - | chr5.3:67403787-67403806 | MS.gene29686:intron | 45.0% | |
| ACGTCGTAAACTCTGACACT+TGG | - | chr5.3:67403780-67403799 | MS.gene29686:intron | 45.0% | |
| AGAAGAGTTGGCAAAGGACA+TGG | - | chr5.3:67405673-67405692 | MS.gene29686:CDS | 45.0% | |
| AGGGCATGCTGAGAAATTGA+TGG | - | chr5.3:67403592-67403611 | MS.gene29686:intron | 45.0% | |
| ATGAAGCACGGACACATACA+CGG | - | chr5.3:67403707-67403726 | MS.gene29686:intron | 45.0% | |
| ATTCACATCACCGGTCTTTG+AGG | + | chr5.3:67405440-67405459 | None:intergenic | 45.0% | |
| CAGCTAAGAAGAGTTGGCAA+AGG | - | chr5.3:67405667-67405686 | MS.gene29686:CDS | 45.0% | |
| CCTGGTATCCAATTCCAAAC+AGG | + | chr5.3:67404944-67404963 | None:intergenic | 45.0% | |
| GCATGATCAAACTCAGAGAG+CGG | + | chr5.3:67404305-67404324 | None:intergenic | 45.0% | |
| GGTTATTGGGCTTGTGCTAT+TGG | + | chr5.3:67403979-67403998 | None:intergenic | 45.0% | |
| GTCTGCCAAATTCACATCAC+CGG | + | chr5.3:67405449-67405468 | None:intergenic | 45.0% | |
| GTTGCTCAGCTAAGAAGAGT+TGG | - | chr5.3:67405661-67405680 | MS.gene29686:CDS | 45.0% | |
| TCGTAGCAGAAACAGCGATT+CGG | + | chr5.3:67403065-67403084 | None:intergenic | 45.0% | |
| TGTATGTGTCCGTGCTTCAT+GGG | + | chr5.3:67403707-67403726 | None:intergenic | 45.0% | |
| TTGATTCCGTTGCTTCAACG+TGG | - | chr5.3:67403027-67403046 | MS.gene29686:intron | 45.0% | |
| ! | CCTGTTTGGAATTGGATACC+AGG | - | chr5.3:67404941-67404960 | MS.gene29686:intron | 45.0% |
| ! | CGGAATCAAACGCGTGTTTT+CGG | + | chr5.3:67403016-67403035 | None:intergenic | 45.0% |
| ! | CGTGATTCCCTGTTTGGAAT+TGG | - | chr5.3:67404933-67404952 | MS.gene29686:intron | 45.0% |
| !! | ATCGCTGTTTCTGCTACGAA+AGG | - | chr5.3:67403066-67403085 | MS.gene29686:intron | 45.0% |
| !! | GTTGTTGGTGTTGAACAGTG+TGG | - | chr5.3:67403341-67403360 | MS.gene29686:CDS | 45.0% |
| !!! | AAGCGAGTTTTTGGGTGAAC+AGG | - | chr5.3:67405477-67405496 | MS.gene29686:intron | 45.0% |
| !!! | TTGATTTATTTAATTAATTT+TGG | - | chr5.3:67403303-67403322 | MS.gene29686:intron | 5.0% |
| CACAATTAAGGGATGGTGCC+TGG | + | chr5.3:67404962-67404981 | None:intergenic | 50.0% | |
| GATAAGGGTGACGCTTTGCA+CGG | - | chr5.3:67404326-67404345 | MS.gene29686:intron | 50.0% | |
| GTGTATGTGTCCGTGCTTCA+TGG | + | chr5.3:67403708-67403727 | None:intergenic | 50.0% | |
| ! | GTGCAAAGCGTCACCCTTAT+CGG | + | chr5.3:67404327-67404346 | None:intergenic | 50.0% |
| CCACAGGTTGCCTCAAAGAC+CGG | - | chr5.3:67405427-67405446 | MS.gene29686:CDS | 55.0% | |
| !! | CCGGTCTTTGAGGCAACCTG+TGG | + | chr5.3:67405430-67405449 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 67402967 | 67405857 | 67402967 | ID=MS.gene29686 |
| chr5.3 | mRNA | 67402967 | 67405857 | 67402967 | ID=MS.gene29686.t1;Parent=MS.gene29686 |
| chr5.3 | exon | 67405583 | 67405857 | 67405583 | ID=MS.gene29686.t1.exon1;Parent=MS.gene29686.t1 |
| chr5.3 | CDS | 67405583 | 67405857 | 67405583 | ID=cds.MS.gene29686.t1;Parent=MS.gene29686.t1 |
| chr5.3 | exon | 67405382 | 67405465 | 67405382 | ID=MS.gene29686.t1.exon2;Parent=MS.gene29686.t1 |
| chr5.3 | CDS | 67405382 | 67405465 | 67405382 | ID=cds.MS.gene29686.t1;Parent=MS.gene29686.t1 |
| chr5.3 | exon | 67405202 | 67405262 | 67405202 | ID=MS.gene29686.t1.exon3;Parent=MS.gene29686.t1 |
| chr5.3 | CDS | 67405202 | 67405262 | 67405202 | ID=cds.MS.gene29686.t1;Parent=MS.gene29686.t1 |
| chr5.3 | exon | 67404477 | 67404564 | 67404477 | ID=MS.gene29686.t1.exon4;Parent=MS.gene29686.t1 |
| chr5.3 | CDS | 67404477 | 67404564 | 67404477 | ID=cds.MS.gene29686.t1;Parent=MS.gene29686.t1 |
| chr5.3 | exon | 67403518 | 67403579 | 67403518 | ID=MS.gene29686.t1.exon5;Parent=MS.gene29686.t1 |
| chr5.3 | CDS | 67403518 | 67403579 | 67403518 | ID=cds.MS.gene29686.t1;Parent=MS.gene29686.t1 |
| chr5.3 | exon | 67403326 | 67403391 | 67403326 | ID=MS.gene29686.t1.exon6;Parent=MS.gene29686.t1 |
| chr5.3 | CDS | 67403326 | 67403391 | 67403326 | ID=cds.MS.gene29686.t1;Parent=MS.gene29686.t1 |
| chr5.3 | exon | 67403130 | 67403193 | 67403130 | ID=MS.gene29686.t1.exon7;Parent=MS.gene29686.t1 |
| chr5.3 | CDS | 67403130 | 67403193 | 67403130 | ID=cds.MS.gene29686.t1;Parent=MS.gene29686.t1 |
| chr5.3 | exon | 67402967 | 67403016 | 67402967 | ID=MS.gene29686.t1.exon8;Parent=MS.gene29686.t1 |
| chr5.3 | CDS | 67402967 | 67403016 | 67402967 | ID=cds.MS.gene29686.t1;Parent=MS.gene29686.t1 |
| Gene Sequence |
| Protein sequence |
