Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071096.t1 | XP_003614248.1 | 98.7 | 236 | 3 | 0 | 1 | 236 | 1 | 236 | 3.40E-128 | 467.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071096.t1 | G7JY47 | 98.7 | 236 | 3 | 0 | 1 | 236 | 1 | 236 | 2.4e-128 | 467.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049821 | MS.gene071096 | 0.801802 | 7.58E-49 | -1.69E-46 |
MS.gene050838 | MS.gene071096 | 0.813784 | 2.15E-51 | -1.69E-46 |
MS.gene051328 | MS.gene071096 | 0.805709 | 1.17E-49 | -1.69E-46 |
MS.gene051719 | MS.gene071096 | 0.834182 | 3.48E-56 | -1.69E-46 |
MS.gene051720 | MS.gene071096 | 0.835075 | 2.07E-56 | -1.69E-46 |
MS.gene052133 | MS.gene071096 | 0.826505 | 2.62E-54 | -1.69E-46 |
MS.gene052516 | MS.gene071096 | 0.827727 | 1.33E-54 | -1.69E-46 |
MS.gene052732 | MS.gene071096 | 0.830464 | 2.89E-55 | -1.69E-46 |
MS.gene053144 | MS.gene071096 | 0.846452 | 2.15E-59 | -1.69E-46 |
MS.gene053171 | MS.gene071096 | 0.800307 | 1.53E-48 | -1.69E-46 |
MS.gene053581 | MS.gene071096 | 0.849076 | 4.08E-60 | -1.69E-46 |
MS.gene054584 | MS.gene071096 | 0.853049 | 3.09E-61 | -1.69E-46 |
MS.gene055465 | MS.gene071096 | 0.856005 | 4.31E-62 | -1.69E-46 |
MS.gene055466 | MS.gene071096 | 0.840281 | 9.56E-58 | -1.69E-46 |
MS.gene055468 | MS.gene071096 | 0.866376 | 2.98E-65 | -1.69E-46 |
MS.gene055469 | MS.gene071096 | 0.822145 | 2.77E-53 | -1.69E-46 |
MS.gene055537 | MS.gene071096 | 0.824466 | 7.95E-54 | -1.69E-46 |
MS.gene055580 | MS.gene071096 | -0.848764 | 4.98E-60 | -1.69E-46 |
MS.gene055891 | MS.gene071096 | 0.817837 | 2.68E-52 | -1.69E-46 |
MS.gene056043 | MS.gene071096 | -0.846462 | 2.14E-59 | -1.69E-46 |
MS.gene058087 | MS.gene071096 | 0.815774 | 7.78E-52 | -1.69E-46 |
MS.gene058945 | MS.gene071096 | 0.807663 | 4.53E-50 | -1.69E-46 |
MS.gene060519 | MS.gene071096 | 0.850183 | 2.00E-60 | -1.69E-46 |
MS.gene060587 | MS.gene071096 | 0.813861 | 2.07E-51 | -1.69E-46 |
MS.gene060884 | MS.gene071096 | 0.80216 | 6.40E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071096.t1 | MTR_5g047050 | 98.729 | 236 | 3 | 0 | 1 | 236 | 1 | 236 | 1.01e-177 | 487 |
MS.gene071096.t1 | MTR_4g109880 | 47.598 | 229 | 109 | 4 | 9 | 236 | 4 | 222 | 9.18e-66 | 203 |
MS.gene071096.t1 | MTR_3g072390 | 35.976 | 164 | 92 | 4 | 74 | 236 | 73 | 224 | 2.54e-24 | 97.1 |
MS.gene071096.t1 | MTR_8g088230 | 27.803 | 223 | 104 | 7 | 66 | 236 | 17 | 234 | 1.59e-19 | 84.3 |
MS.gene071096.t1 | MTR_2g055760 | 32.143 | 140 | 84 | 3 | 79 | 216 | 16 | 146 | 2.64e-14 | 69.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071096.t1 | AT1G69080 | 44.309 | 246 | 104 | 5 | 1 | 236 | 1 | 223 | 1.70e-64 | 200 |
MS.gene071096.t1 | AT2G03720 | 54.913 | 173 | 72 | 5 | 66 | 236 | 64 | 232 | 5.66e-59 | 186 |
MS.gene071096.t1 | AT2G03720 | 55.030 | 169 | 70 | 5 | 70 | 236 | 1 | 165 | 1.25e-57 | 181 |
MS.gene071096.t1 | AT1G69080 | 41.463 | 246 | 97 | 6 | 1 | 236 | 1 | 209 | 3.67e-55 | 176 |
MS.gene071096.t1 | AT5G17390 | 49.133 | 173 | 79 | 4 | 68 | 236 | 118 | 285 | 1.64e-51 | 169 |
MS.gene071096.t1 | AT3G03290 | 46.243 | 173 | 84 | 4 | 68 | 236 | 107 | 274 | 7.95e-48 | 159 |
MS.gene071096.t1 | AT1G44760 | 38.012 | 171 | 87 | 4 | 66 | 236 | 62 | 213 | 9.00e-31 | 113 |
MS.gene071096.t1 | AT1G44760 | 38.012 | 171 | 87 | 4 | 66 | 236 | 133 | 284 | 4.17e-30 | 113 |
MS.gene071096.t1 | AT4G13450 | 27.885 | 208 | 111 | 6 | 66 | 236 | 14 | 219 | 1.41e-17 | 79.0 |
MS.gene071096.t1 | AT1G48960 | 30.488 | 164 | 99 | 6 | 67 | 230 | 5 | 153 | 1.76e-14 | 70.5 |
Find 41 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGCCATACAATGTGCATTT+TGG | 0.179754 | 5.1:-34911930 | None:intergenic |
AGAAGAAAGAGTAAGAAAAT+TGG | 0.268808 | 5.1:+34911961 | MS.gene071096:CDS |
AAGACAAGGCGTGGCACTTT+TGG | 0.275641 | 5.1:+34911816 | MS.gene071096:CDS |
TGCCCATTGCAAAGCACCTT+TGG | 0.367782 | 5.1:-34911025 | None:intergenic |
TACTCACACTGTTCAGAATC+AGG | 0.397968 | 5.1:+34911050 | MS.gene071096:CDS |
TATCCAAAATGCACATTGTA+TGG | 0.401167 | 5.1:+34911927 | MS.gene071096:CDS |
TCATGCTTGGCTTGTATAGT+TGG | 0.420901 | 5.1:-34910862 | None:intergenic |
AAGAGAGGAGCAAGGTTACC+AGG | 0.459111 | 5.1:+34910796 | MS.gene071096:CDS |
CTGGCAATAGAGTCACTGGT+GGG | 0.465505 | 5.1:+34911890 | MS.gene071096:CDS |
AGCCAAAGGTGCTTTGCAAT+GGG | 0.470225 | 5.1:+34911023 | MS.gene071096:CDS |
AAGCCAAAGGTGCTTTGCAA+TGG | 0.482336 | 5.1:+34911022 | MS.gene071096:CDS |
AGAAAGAGTAAGAAAATTGG+AGG | 0.492506 | 5.1:+34911964 | MS.gene071096:CDS |
TGATGATGAAGCTACTAGTA+AGG | 0.513401 | 5.1:+34911224 | MS.gene071096:CDS |
AGTAACAGAAGGGAAAGAAA+AGG | 0.525585 | 5.1:+34911768 | MS.gene071096:CDS |
AACAAGGGTCAGTAGTTAGT+AGG | 0.536437 | 5.1:+34910968 | MS.gene071096:CDS |
GTAACAGAAGGGAAAGAAAA+GGG | 0.538384 | 5.1:+34911769 | MS.gene071096:CDS |
TGGGCTGGCAATAGAGTCAC+TGG | 0.549351 | 5.1:+34911886 | MS.gene071096:CDS |
GGCGAACGCACCCTCGCATG+TGG | 0.550940 | 5.1:-34910841 | None:intergenic |
AAACCTTGTTTAGAATTCGA+AGG | 0.560200 | 5.1:-34911102 | None:intergenic |
TCGAATTAGGCCACATGCGA+GGG | 0.562880 | 5.1:+34910831 | MS.gene071096:CDS |
TTTGACGATGGTGTGAAACA+AGG | 0.566437 | 5.1:+34910952 | MS.gene071096:CDS |
GAAGCAAGTTCATAAGCCCT+TGG | 0.570979 | 5.1:-34911255 | None:intergenic |
TTCCAAAACATGGGCAAGAG+AGG | 0.576269 | 5.1:+34910781 | None:intergenic |
CGTCTTCTAATGATGTGGGC+TGG | 0.577564 | 5.1:+34911871 | MS.gene071096:CDS |
CATTAGAAGACGCCATGTTG+TGG | 0.577627 | 5.1:-34911860 | None:intergenic |
ATTGAGATTGCAGTAACAGA+AGG | 0.585136 | 5.1:+34911757 | MS.gene071096:CDS |
CAATAGAGTCACTGGTGGGG+TGG | 0.587431 | 5.1:+34911894 | MS.gene071096:CDS |
CATGGCGTCTTCTAATGATG+TGG | 0.588320 | 5.1:+34911866 | MS.gene071096:CDS |
GAAAGAGTAAGAAAATTGGA+GGG | 0.591657 | 5.1:+34911965 | MS.gene071096:CDS |
ATCGAATTAGGCCACATGCG+AGG | 0.593025 | 5.1:+34910830 | MS.gene071096:CDS |
TTGACGATGGTGTGAAACAA+GGG | 0.607583 | 5.1:+34910953 | MS.gene071096:CDS |
TTGAGATTGCAGTAACAGAA+GGG | 0.610661 | 5.1:+34911758 | MS.gene071096:CDS |
GCTGGCAATAGAGTCACTGG+TGG | 0.614214 | 5.1:+34911889 | MS.gene071096:CDS |
AAGCCTTCGAATTCTAAACA+AGG | 0.615497 | 5.1:+34911099 | MS.gene071096:CDS |
TGGCAATAGAGTCACTGGTG+GGG | 0.616318 | 5.1:+34911891 | MS.gene071096:CDS |
ATGGCGTCTTCTAATGATGT+GGG | 0.632260 | 5.1:+34911867 | MS.gene071096:CDS |
CTAGTAAGGAGACAGATCCA+AGG | 0.637212 | 5.1:+34911238 | MS.gene071096:CDS |
TAGTAAGGAGACAGATCCAA+GGG | 0.640856 | 5.1:+34911239 | MS.gene071096:CDS |
TGCGAAGAGAAATTTGACGA+TGG | 0.691085 | 5.1:+34910940 | MS.gene071096:CDS |
ACATGGGCAAGAGAGGAGCA+AGG | 0.696922 | 5.1:+34910788 | None:intergenic |
TTGTAATCTGAAAATGCCTG+AGG | 0.734520 | 5.1:+34911293 | MS.gene071096:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTACTTAAAATTATTTCAA+AGG | - | chr5.1:34911524-34911543 | None:intergenic | 10.0% |
!! | CAATATAATGTAAATAAACA+AGG | + | chr5.1:34911622-34911641 | MS.gene071096:intron | 15.0% |
!!! | TATAAATCTAAATTTTCAGA+TGG | - | chr5.1:34911345-34911364 | None:intergenic | 15.0% |
!! | AAGGTTAAATGTTAAAATCT+CGG | - | chr5.1:34911505-34911524 | None:intergenic | 20.0% |
!! | ATCATCATACAAAGAATTTA+AGG | - | chr5.1:34911595-34911614 | None:intergenic | 20.0% |
! | AAAACATACAATGATATCAG+TGG | - | chr5.1:34911134-34911153 | None:intergenic | 25.0% |
! | AGAAGAAAGAGTAAGAAAAT+TGG | + | chr5.1:34911961-34911980 | MS.gene071096:CDS | 25.0% |
! | CAAGTATGATTCATTCAATA+TGG | + | chr5.1:34911194-34911213 | MS.gene071096:intron | 25.0% |
! | TGGATGGAATTTATTACATT+TGG | - | chr5.1:34911652-34911671 | None:intergenic | 25.0% |
!! | GTATGTTTTCTCTTCAAATT+TGG | + | chr5.1:34911145-34911164 | MS.gene071096:intron | 25.0% |
!! | TATATTGTCACTTACTTACA+TGG | - | chr5.1:34911672-34911691 | None:intergenic | 25.0% |
AATCTCAATTTGTACCTATC+AGG | - | chr5.1:34911746-34911765 | None:intergenic | 30.0% | |
ACTGTATATATGATCCTGAT+AGG | + | chr5.1:34911729-34911748 | MS.gene071096:intron | 30.0% | |
AGAAAGAGTAAGAAAATTGG+AGG | + | chr5.1:34911964-34911983 | MS.gene071096:CDS | 30.0% | |
GAAAGAGTAAGAAAATTGGA+GGG | + | chr5.1:34911965-34911984 | MS.gene071096:CDS | 30.0% | |
TATCCAAAATGCACATTGTA+TGG | + | chr5.1:34911927-34911946 | MS.gene071096:CDS | 30.0% | |
TTCATTTGGTACCATTGTTT+AGG | + | chr5.1:34911440-34911459 | MS.gene071096:intron | 30.0% | |
TTTAACACCCTGAAAAATAG+AGG | + | chr5.1:34911392-34911411 | MS.gene071096:intron | 30.0% | |
! | AAACCTTGTTTAGAATTCGA+AGG | - | chr5.1:34911105-34911124 | None:intergenic | 30.0% |
! | CTAAGCGTCATAAAGATTTT+TGG | + | chr5.1:34912001-34912020 | MS.gene071096:CDS | 30.0% |
! | GTTTTTGCTTGAATCGAATT+AGG | + | chr5.1:34910818-34910837 | MS.gene071096:CDS | 30.0% |
!! | ATCATCACTTTTATCATGCT+TGG | - | chr5.1:34910878-34910897 | None:intergenic | 30.0% |
!!! | TCATAAAGATTTTTGGCTCT+TGG | + | chr5.1:34912008-34912027 | MS.gene071096:CDS | 30.0% |
AAGCCTTCGAATTCTAAACA+AGG | + | chr5.1:34911099-34911118 | MS.gene071096:CDS | 35.0% | |
AGAAAAGGGACCAAAAATAG+TGG | + | chr5.1:34911783-34911802 | MS.gene071096:CDS | 35.0% | |
AGTAACAGAAGGGAAAGAAA+AGG | + | chr5.1:34911768-34911787 | MS.gene071096:CDS | 35.0% | |
ATTCGATTCAAGCAAAAACC+TGG | - | chr5.1:34910817-34910836 | None:intergenic | 35.0% | |
ATTGAGATTGCAGTAACAGA+AGG | + | chr5.1:34911757-34911776 | MS.gene071096:CDS | 35.0% | |
CTAGTGAGTTACACTTCATT+TGG | + | chr5.1:34911426-34911445 | MS.gene071096:intron | 35.0% | |
GTAACAGAAGGGAAAGAAAA+GGG | + | chr5.1:34911769-34911788 | MS.gene071096:CDS | 35.0% | |
TTGAGATTGCAGTAACAGAA+GGG | + | chr5.1:34911758-34911777 | MS.gene071096:CDS | 35.0% | |
TTGTAATCTGAAAATGCCTG+AGG | + | chr5.1:34911293-34911312 | MS.gene071096:CDS | 35.0% | |
! | TCAGATGGTAGCATAGTTTT+AGG | - | chr5.1:34911330-34911349 | None:intergenic | 35.0% |
! | TGATGATGAAGCTACTAGTA+AGG | + | chr5.1:34911224-34911243 | MS.gene071096:CDS | 35.0% |
! | TTGCCATACAATGTGCATTT+TGG | - | chr5.1:34911933-34911952 | None:intergenic | 35.0% |
! | TTGTCACTTACTTACATGGA+TGG | - | chr5.1:34911668-34911687 | None:intergenic | 35.0% |
! | TTTGCTTCCTCCACTATTTT+TGG | - | chr5.1:34911796-34911815 | None:intergenic | 35.0% |
!! | TCACACTCCTCTATTTTTCA+GGG | - | chr5.1:34911402-34911421 | None:intergenic | 35.0% |
!!! | GATTCTAGTTTTGAAGCCAA+AGG | + | chr5.1:34911009-34911028 | MS.gene071096:CDS | 35.0% |
AAAGGGACCAAAAATAGTGG+AGG | + | chr5.1:34911786-34911805 | MS.gene071096:CDS | 40.0% | |
AACAAGGGTCAGTAGTTAGT+AGG | + | chr5.1:34910968-34910987 | MS.gene071096:CDS | 40.0% | |
AGAAAAAGAGGTCCACAACA+TGG | + | chr5.1:34911848-34911867 | MS.gene071096:CDS | 40.0% | |
ATGGCGTCTTCTAATGATGT+GGG | + | chr5.1:34911867-34911886 | MS.gene071096:CDS | 40.0% | |
TACTCACACTGTTCAGAATC+AGG | + | chr5.1:34911050-34911069 | MS.gene071096:CDS | 40.0% | |
TAGTAAGGAGACAGATCCAA+GGG | + | chr5.1:34911239-34911258 | MS.gene071096:CDS | 40.0% | |
TCGCGATACAACCTAAACAA+TGG | - | chr5.1:34911454-34911473 | None:intergenic | 40.0% | |
TGCGAAGAGAAATTTGACGA+TGG | + | chr5.1:34910940-34910959 | MS.gene071096:CDS | 40.0% | |
TTGACGATGGTGTGAAACAA+GGG | + | chr5.1:34910953-34910972 | MS.gene071096:CDS | 40.0% | |
TTTGACGATGGTGTGAAACA+AGG | + | chr5.1:34910952-34910971 | MS.gene071096:CDS | 40.0% | |
!! | CTCACACTCCTCTATTTTTC+AGG | - | chr5.1:34911403-34911422 | None:intergenic | 40.0% |
!! | TCATGCTTGGCTTGTATAGT+TGG | - | chr5.1:34910865-34910884 | None:intergenic | 40.0% |
CATGGCGTCTTCTAATGATG+TGG | + | chr5.1:34911866-34911885 | MS.gene071096:CDS | 45.0% | |
CATTAGAAGACGCCATGTTG+TGG | - | chr5.1:34911863-34911882 | None:intergenic | 45.0% | |
CTAGTAAGGAGACAGATCCA+AGG | + | chr5.1:34911238-34911257 | MS.gene071096:CDS | 45.0% | |
GAAGCAAGTTCATAAGCCCT+TGG | - | chr5.1:34911258-34911277 | None:intergenic | 45.0% | |
GTGGAGGAAGCAAAAAGACA+AGG | + | chr5.1:34911802-34911821 | MS.gene071096:CDS | 45.0% | |
TTAGGAGCTAAACTCACCTC+AGG | - | chr5.1:34911312-34911331 | None:intergenic | 45.0% | |
!! | AAGCCAAAGGTGCTTTGCAA+TGG | + | chr5.1:34911022-34911041 | MS.gene071096:CDS | 45.0% |
!! | AGCCAAAGGTGCTTTGCAAT+GGG | + | chr5.1:34911023-34911042 | MS.gene071096:CDS | 45.0% |
!!! | TGGTTTTGGGGCAGAAAAAG+AGG | + | chr5.1:34911836-34911855 | MS.gene071096:CDS | 45.0% |
AAGAGAGGAGCAAGGTTACC+AGG | + | chr5.1:34910796-34910815 | MS.gene071096:CDS | 50.0% | |
ATCGAATTAGGCCACATGCG+AGG | + | chr5.1:34910830-34910849 | MS.gene071096:CDS | 50.0% | |
CGTCTTCTAATGATGTGGGC+TGG | + | chr5.1:34911871-34911890 | MS.gene071096:CDS | 50.0% | |
CTGGCAATAGAGTCACTGGT+GGG | + | chr5.1:34911890-34911909 | MS.gene071096:CDS | 50.0% | |
GGAAGCAAAAAGACAAGGCG+TGG | + | chr5.1:34911807-34911826 | MS.gene071096:CDS | 50.0% | |
TCGAATTAGGCCACATGCGA+GGG | + | chr5.1:34910831-34910850 | MS.gene071096:CDS | 50.0% | |
TGGCAATAGAGTCACTGGTG+GGG | + | chr5.1:34911891-34911910 | MS.gene071096:CDS | 50.0% | |
! | AAGACAAGGCGTGGCACTTT+TGG | + | chr5.1:34911816-34911835 | MS.gene071096:CDS | 50.0% |
! | TGCCCATTGCAAAGCACCTT+TGG | - | chr5.1:34911028-34911047 | None:intergenic | 50.0% |
!!! | AGGCGTGGCACTTTTGGTTT+TGG | + | chr5.1:34911822-34911841 | MS.gene071096:CDS | 50.0% |
!!! | GCGTGGCACTTTTGGTTTTG+GGG | + | chr5.1:34911824-34911843 | MS.gene071096:CDS | 50.0% |
!!! | GGCGTGGCACTTTTGGTTTT+GGG | + | chr5.1:34911823-34911842 | MS.gene071096:CDS | 50.0% |
CAATAGAGTCACTGGTGGGG+TGG | + | chr5.1:34911894-34911913 | MS.gene071096:CDS | 55.0% | |
GCTGGCAATAGAGTCACTGG+TGG | + | chr5.1:34911889-34911908 | MS.gene071096:CDS | 55.0% | |
!! | TGGGCTGGCAATAGAGTCAC+TGG | + | chr5.1:34911886-34911905 | MS.gene071096:CDS | 55.0% |
GGCGAACGCACCCTCGCATG+TGG | - | chr5.1:34910844-34910863 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 34910790 | 34912035 | 34910790 | ID=MS.gene071096 |
chr5.1 | mRNA | 34910790 | 34912035 | 34910790 | ID=MS.gene071096.t1;Parent=MS.gene071096 |
chr5.1 | exon | 34910790 | 34911120 | 34910790 | ID=MS.gene071096.t1.exon1;Parent=MS.gene071096.t1 |
chr5.1 | CDS | 34910790 | 34911120 | 34910790 | ID=cds.MS.gene071096.t1;Parent=MS.gene071096.t1 |
chr5.1 | exon | 34911220 | 34911314 | 34911220 | ID=MS.gene071096.t1.exon2;Parent=MS.gene071096.t1 |
chr5.1 | CDS | 34911220 | 34911314 | 34911220 | ID=cds.MS.gene071096.t1;Parent=MS.gene071096.t1 |
chr5.1 | exon | 34911751 | 34912035 | 34911751 | ID=MS.gene071096.t1.exon3;Parent=MS.gene071096.t1 |
chr5.1 | CDS | 34911751 | 34912035 | 34911751 | ID=cds.MS.gene071096.t1;Parent=MS.gene071096.t1 |
Gene Sequence |
Protein sequence |