AlfalfaGEDB | MS.gene071096

M. sativa cultivar XinJiangDaYe / MS.gene071096

KEGG: -
GO: -
PFAM: PF00582.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071096.t1	XP_003614248.1	98.7	236	3	0	1	236	1	236	3.40E-128	467.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071096.t1	G7JY47	98.7	236	3	0	1	236	1	236	2.4e-128	467.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049821	MS.gene071096	0.801802	7.58E-49	-1.69E-46
MS.gene050838	MS.gene071096	0.813784	2.15E-51	-1.69E-46
MS.gene051328	MS.gene071096	0.805709	1.17E-49	-1.69E-46
MS.gene051719	MS.gene071096	0.834182	3.48E-56	-1.69E-46
MS.gene051720	MS.gene071096	0.835075	2.07E-56	-1.69E-46
MS.gene052133	MS.gene071096	0.826505	2.62E-54	-1.69E-46
MS.gene052516	MS.gene071096	0.827727	1.33E-54	-1.69E-46
MS.gene052732	MS.gene071096	0.830464	2.89E-55	-1.69E-46
MS.gene053144	MS.gene071096	0.846452	2.15E-59	-1.69E-46
MS.gene053171	MS.gene071096	0.800307	1.53E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071096.t1	MTR_5g047050	98.729	236	3	0	1	236	1	236	1.01e-177	487
MS.gene071096.t1	MTR_4g109880	47.598	229	109	4	9	236	4	222	9.18e-66	203
MS.gene071096.t1	MTR_3g072390	35.976	164	92	4	74	236	73	224	2.54e-24	97.1
MS.gene071096.t1	MTR_8g088230	27.803	223	104	7	66	236	17	234	1.59e-19	84.3
MS.gene071096.t1	MTR_2g055760	32.143	140	84	3	79	216	16	146	2.64e-14	69.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071096.t1	AT1G69080	44.309	246	104	5	1	236	1	223	1.70e-64	200
MS.gene071096.t1	AT2G03720	54.913	173	72	5	66	236	64	232	5.66e-59	186
MS.gene071096.t1	AT2G03720	55.030	169	70	5	70	236	1	165	1.25e-57	181
MS.gene071096.t1	AT1G69080	41.463	246	97	6	1	236	1	209	3.67e-55	176
MS.gene071096.t1	AT5G17390	49.133	173	79	4	68	236	118	285	1.64e-51	169
MS.gene071096.t1	AT3G03290	46.243	173	84	4	68	236	107	274	7.95e-48	159
MS.gene071096.t1	AT1G44760	38.012	171	87	4	66	236	62	213	9.00e-31	113
MS.gene071096.t1	AT1G44760	38.012	171	87	4	66	236	133	284	4.17e-30	113
MS.gene071096.t1	AT4G13450	27.885	208	111	6	66	236	14	219	1.41e-17	79.0
MS.gene071096.t1	AT1G48960	30.488	164	99	6	67	230	5	153	1.76e-14	70.5

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Find 41 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTGTTTAGAATTCGA+AGG	0.560200	5.1:-34911102	None:intergenic
AACAAGGGTCAGTAGTTAGT+AGG	0.536437	5.1:+34910968	MS.gene071096:CDS
AAGACAAGGCGTGGCACTTT+TGG	0.275641	5.1:+34911816	MS.gene071096:CDS
AAGAGAGGAGCAAGGTTACC+AGG	0.459111	5.1:+34910796	MS.gene071096:CDS
AAGCCAAAGGTGCTTTGCAA+TGG	0.482336	5.1:+34911022	MS.gene071096:CDS
AAGCCTTCGAATTCTAAACA+AGG	0.615497	5.1:+34911099	MS.gene071096:CDS
ACATGGGCAAGAGAGGAGCA+AGG	0.696922	5.1:+34910788	None:intergenic
AGAAAGAGTAAGAAAATTGG+AGG	0.492506	5.1:+34911964	MS.gene071096:CDS
AGAAGAAAGAGTAAGAAAAT+TGG	0.268808	5.1:+34911961	MS.gene071096:CDS
AGCCAAAGGTGCTTTGCAAT+GGG	0.470225	5.1:+34911023	MS.gene071096:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCTCAATTTGTACCTATC+AGG	-	chr5.1:34911746-34911765	None:intergenic	30.0%
ACTGTATATATGATCCTGAT+AGG	+	chr5.1:34911729-34911748	MS.gene071096:intron	30.0%
AGAAAGAGTAAGAAAATTGG+AGG	+	chr5.1:34911964-34911983	MS.gene071096:CDS	30.0%
GAAAGAGTAAGAAAATTGGA+GGG	+	chr5.1:34911965-34911984	MS.gene071096:CDS	30.0%
TATCCAAAATGCACATTGTA+TGG	+	chr5.1:34911927-34911946	MS.gene071096:CDS	30.0%
TTCATTTGGTACCATTGTTT+AGG	+	chr5.1:34911440-34911459	MS.gene071096:intron	30.0%
TTTAACACCCTGAAAAATAG+AGG	+	chr5.1:34911392-34911411	MS.gene071096:intron	30.0%
AAGCCTTCGAATTCTAAACA+AGG	+	chr5.1:34911099-34911118	MS.gene071096:CDS	35.0%
AGAAAAGGGACCAAAAATAG+TGG	+	chr5.1:34911783-34911802	MS.gene071096:CDS	35.0%
AGTAACAGAAGGGAAAGAAA+AGG	+	chr5.1:34911768-34911787	MS.gene071096:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	34910790	34912035	34910790	ID=MS.gene071096
chr5.1	mRNA	34910790	34912035	34910790	ID=MS.gene071096.t1;Parent=MS.gene071096
chr5.1	exon	34910790	34911120	34910790	ID=MS.gene071096.t1.exon1;Parent=MS.gene071096.t1
chr5.1	CDS	34910790	34911120	34910790	ID=cds.MS.gene071096.t1;Parent=MS.gene071096.t1
chr5.1	exon	34911220	34911314	34911220	ID=MS.gene071096.t1.exon2;Parent=MS.gene071096.t1
chr5.1	CDS	34911220	34911314	34911220	ID=cds.MS.gene071096.t1;Parent=MS.gene071096.t1
chr5.1	exon	34911751	34912035	34911751	ID=MS.gene071096.t1.exon3;Parent=MS.gene071096.t1
chr5.1	CDS	34911751	34912035	34911751	ID=cds.MS.gene071096.t1;Parent=MS.gene071096.t1

Gene Sequence

>MS.gene071096

ATGGGCAAGAGAGGAGCAAGGTTACCAGGTTTTTGCTTGAATCGAATTAGGCCACATGCGAGGGTGCGTTCGCCAACTATACAAGCCAAGCATGATAAAAGTGATGATGCTAAAATTGATCAGAAAATTACTGAGAATTCATGCAGTGTTTGCGAAGAGAAATTTGACGATGGTGTGAAACAAGGGTCAGTAGTTAGTAGGAAGATTATGATTGTGATTGATTCTAGTTTTGAAGCCAAAGGTGCTTTGCAATGGGCACTTACTCACACTGTTCAGAATCAGGATACTATAGTTCTTCTTCATGTCATGAAGCCTTCGAATTCTAAACAAGGTTTGTGAAACCACTGATATCATTGTATGTTTTCTCTTCAAATTTGGCTTATTTTTTTGTGATTGAAACATATCAAGTATGATTCATTCAATATGGCAGAAACTGATGATGAAGCTACTAGTAAGGAGACAGATCCAAGGGCTTATGAACTTGCTTCATCTTTCAAGAATATTTGTAATCTGAAAATGCCTGAGGTGAGTTTAGCTCCTAAAACTATGCTACCATCTGAAAATTTAGATTTATATCTAAGAGTAATGCTAGCAACATACATTTTAACACCCTGAAAAATAGAGGAGTGTGAGTGACTAGTGAGTTACACTTCATTTGGTACCATTGTTTAGGTTGTATCGCGATGTATTTTATCTGATATTCTACATTTTTCCGAGATTTTAACATTTAACCTTTGAAATAATTTTAAGTAAATTTGTTAAAATTCTAGTTCTAGATTGTGAATATCAATCAACATTAAATCCTTAAATTCTTTGTATGATGATGTTGAGACAATATAATGTAAATAAACAAGGCATGCCAAATGTAATAAATTCCATCCATGTAAGTAAGTGACAATATATTTTACTTTATATGAAATGTAATAATTAAATGTTGAGACTGTATATATGATCCTGATAGGTACAAATTGAGATTGCAGTAACAGAAGGGAAAGAAAAGGGACCAAAAATAGTGGAGGAAGCAAAAAGACAAGGCGTGGCACTTTTGGTTTTGGGGCAGAAAAAGAGGTCCACAACATGGCGTCTTCTAATGATGTGGGCTGGCAATAGAGTCACTGGTGGGGTGGTAGAGTATTGTATCCAAAATGCACATTGTATGGCAATTGCTGTGAGAAGAAAGAGTAAGAAAATTGGAGGGTATATGATTACTACTAAGCGTCATAAAGATTTTTGGCTCTTGGCTTGA

Protein sequence

>MS.gene071096.t1

MGKRGARLPGFCLNRIRPHARVRSPTIQAKHDKSDDAKIDQKITENSCSVCEEKFDDGVKQGSVVSRKIMIVIDSSFEAKGALQWALTHTVQNQDTIVLLHVMKPSNSKQETDDEATSKETDPRAYELASSFKNICNLKMPEVQIEIAVTEGKEKGPKIVEEAKRQGVALLVLGQKKRSTTWRLLMMWAGNRVTGGVVEYCIQNAHCMAIAVRRKSKKIGGYMITTKRHKDFWLLA