Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071539.t1 | XP_024632100.1 | 59.3 | 509 | 84 | 13 | 1 | 398 | 1 | 497 | 1.50E-139 | 506.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071539.t1 | Q9LJE5 | 33.2 | 256 | 94 | 7 | 186 | 372 | 355 | 602 | 1.4e-26 | 122.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071539.t1 | G7IT77 | 59.3 | 506 | 83 | 13 | 4 | 398 | 88 | 581 | 4.4e-138 | 500.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene55918 | MS.gene071539 | PPI |
| MS.gene68609 | MS.gene071539 | PPI |
| MS.gene071539 | MS.gene00083 | PPI |
| MS.gene67868 | MS.gene071539 | PPI |
| MS.gene26804 | MS.gene071539 | PPI |
| MS.gene030136 | MS.gene071539 | PPI |
| MS.gene058307 | MS.gene071539 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071539.t1 | MTR_2g063460 | 58.717 | 499 | 83 | 13 | 11 | 398 | 95 | 581 | 1.45e-167 | 482 |
| MS.gene071539.t1 | MTR_2g063460 | 58.717 | 499 | 83 | 13 | 11 | 398 | 93 | 579 | 2.64e-167 | 481 |
| MS.gene071539.t1 | MTR_2g032660 | 38.095 | 231 | 82 | 6 | 206 | 379 | 311 | 537 | 7.95e-38 | 145 |
| MS.gene071539.t1 | MTR_2g005840 | 30.526 | 380 | 193 | 11 | 54 | 370 | 42 | 413 | 5.36e-37 | 140 |
| MS.gene071539.t1 | MTR_2g005840 | 30.526 | 380 | 193 | 11 | 54 | 370 | 73 | 444 | 7.17e-37 | 140 |
| MS.gene071539.t1 | MTR_4g123630 | 37.668 | 223 | 79 | 6 | 208 | 374 | 280 | 498 | 1.63e-35 | 138 |
| MS.gene071539.t1 | MTR_4g005110 | 38.428 | 229 | 77 | 7 | 202 | 374 | 337 | 557 | 2.88e-34 | 134 |
| MS.gene071539.t1 | MTR_8g088390 | 33.333 | 237 | 85 | 6 | 202 | 372 | 352 | 581 | 3.45e-28 | 117 |
| MS.gene071539.t1 | MTR_8g088390 | 33.333 | 237 | 85 | 6 | 202 | 372 | 287 | 516 | 4.38e-28 | 116 |
| MS.gene071539.t1 | MTR_7g085500 | 30.000 | 260 | 95 | 9 | 186 | 374 | 347 | 590 | 1.81e-25 | 108 |
| MS.gene071539.t1 | MTR_6g032970 | 28.777 | 278 | 119 | 8 | 169 | 374 | 294 | 564 | 4.62e-25 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071539.t1 | AT1G79270 | 39.576 | 283 | 101 | 10 | 144 | 370 | 200 | 468 | 1.11e-47 | 170 |
| MS.gene071539.t1 | AT1G79270 | 39.576 | 283 | 101 | 10 | 144 | 370 | 200 | 468 | 1.11e-47 | 170 |
| MS.gene071539.t1 | AT1G79270 | 39.576 | 283 | 101 | 10 | 144 | 370 | 200 | 468 | 1.11e-47 | 170 |
| MS.gene071539.t1 | AT1G79270 | 39.576 | 283 | 101 | 10 | 144 | 370 | 215 | 483 | 1.66e-47 | 170 |
| MS.gene071539.t1 | AT3G13060 | 33.775 | 302 | 121 | 9 | 162 | 393 | 269 | 561 | 4.51e-38 | 145 |
| MS.gene071539.t1 | AT3G13060 | 33.775 | 302 | 121 | 9 | 162 | 393 | 269 | 561 | 4.51e-38 | 145 |
| MS.gene071539.t1 | AT3G13060 | 33.775 | 302 | 121 | 9 | 162 | 393 | 291 | 583 | 4.53e-38 | 145 |
| MS.gene071539.t1 | AT3G13060 | 33.775 | 302 | 121 | 9 | 162 | 393 | 281 | 573 | 5.01e-38 | 145 |
| MS.gene071539.t1 | AT3G13460 | 33.203 | 256 | 94 | 7 | 186 | 372 | 355 | 602 | 1.85e-31 | 126 |
| MS.gene071539.t1 | AT3G13460 | 33.203 | 256 | 94 | 7 | 186 | 372 | 352 | 599 | 2.06e-31 | 126 |
| MS.gene071539.t1 | AT3G13460 | 33.203 | 256 | 94 | 7 | 186 | 372 | 354 | 601 | 2.11e-31 | 126 |
| MS.gene071539.t1 | AT1G48110 | 33.191 | 235 | 96 | 5 | 202 | 379 | 262 | 492 | 1.26e-30 | 124 |
| MS.gene071539.t1 | AT1G48110 | 33.191 | 235 | 96 | 5 | 202 | 379 | 262 | 492 | 1.26e-30 | 124 |
| MS.gene071539.t1 | AT1G09810 | 35.242 | 227 | 86 | 6 | 201 | 372 | 156 | 376 | 1.75e-30 | 122 |
| MS.gene071539.t1 | AT1G55500 | 35.156 | 256 | 85 | 10 | 190 | 372 | 327 | 574 | 1.84e-30 | 123 |
| MS.gene071539.t1 | AT1G09810 | 35.242 | 227 | 86 | 6 | 201 | 372 | 175 | 395 | 1.85e-30 | 122 |
| MS.gene071539.t1 | AT1G09810 | 35.242 | 227 | 86 | 6 | 201 | 372 | 133 | 353 | 1.86e-30 | 121 |
| MS.gene071539.t1 | AT1G55500 | 33.594 | 256 | 89 | 8 | 190 | 372 | 327 | 574 | 1.98e-30 | 123 |
| MS.gene071539.t1 | AT1G55500 | 33.594 | 256 | 89 | 8 | 190 | 372 | 314 | 561 | 2.32e-30 | 123 |
| MS.gene071539.t1 | AT1G55500 | 35.156 | 256 | 85 | 10 | 190 | 372 | 327 | 574 | 2.52e-30 | 123 |
| MS.gene071539.t1 | AT3G17330 | 33.333 | 228 | 91 | 5 | 209 | 379 | 116 | 339 | 2.56e-30 | 122 |
| MS.gene071539.t1 | AT1G55500 | 33.594 | 256 | 89 | 8 | 190 | 372 | 284 | 531 | 2.66e-30 | 122 |
| MS.gene071539.t1 | AT1G55500 | 33.594 | 256 | 89 | 8 | 190 | 372 | 271 | 518 | 2.99e-30 | 122 |
| MS.gene071539.t1 | AT3G17330 | 33.333 | 228 | 91 | 5 | 209 | 379 | 218 | 441 | 5.15e-30 | 122 |
| MS.gene071539.t1 | AT3G17330 | 33.333 | 228 | 91 | 5 | 209 | 379 | 218 | 441 | 5.15e-30 | 122 |
| MS.gene071539.t1 | AT1G27960 | 35.808 | 229 | 92 | 8 | 206 | 387 | 215 | 435 | 1.46e-29 | 119 |
| MS.gene071539.t1 | AT1G27960 | 35.808 | 229 | 92 | 8 | 206 | 387 | 289 | 509 | 4.25e-29 | 119 |
| MS.gene071539.t1 | AT5G58190 | 34.579 | 214 | 82 | 6 | 230 | 398 | 313 | 513 | 1.02e-28 | 118 |
| MS.gene071539.t1 | AT5G58190 | 34.579 | 214 | 82 | 6 | 230 | 398 | 312 | 512 | 1.03e-28 | 117 |
| MS.gene071539.t1 | AT5G61020 | 31.915 | 235 | 90 | 7 | 206 | 377 | 197 | 424 | 5.77e-28 | 115 |
| MS.gene071539.t1 | AT5G61020 | 31.915 | 235 | 90 | 7 | 206 | 377 | 199 | 426 | 6.09e-28 | 115 |
| MS.gene071539.t1 | AT3G13060 | 34.928 | 209 | 96 | 7 | 162 | 339 | 291 | 490 | 5.33e-27 | 113 |
| MS.gene071539.t1 | AT3G03950 | 29.091 | 275 | 119 | 10 | 156 | 374 | 149 | 403 | 7.65e-25 | 105 |
| MS.gene071539.t1 | AT3G03950 | 29.091 | 275 | 119 | 10 | 156 | 374 | 150 | 404 | 8.27e-25 | 105 |
| MS.gene071539.t1 | AT3G03950 | 29.091 | 275 | 119 | 10 | 156 | 374 | 153 | 407 | 9.38e-25 | 105 |
| MS.gene071539.t1 | AT3G13060 | 30.588 | 170 | 80 | 6 | 162 | 300 | 291 | 453 | 1.06e-11 | 66.6 |
Find 0 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAAATGAAAAGTAAGAA+GGG | - | 14996:14159-14178 | MS.gene071539:intergenic | 15.0% |
| !! | GAAAATAACATGTTAATAAA+AGG | + | 14996:11711-11730 | MS.gene071539:intron | 15.0% |
| !! | TAATTGTAACACAATTAAAA+AGG | - | 14996:14133-14152 | MS.gene071539:intergenic | 15.0% |
| !! | TATATAAATGAAAAGTAAGA+AGG | - | 14996:14160-14179 | MS.gene071539:intergenic | 15.0% |
| !!! | AATTTTTGTTGGTTTTATTT+AGG | + | 14996:11930-11949 | MS.gene071539:intron | 15.0% |
| !!! | GTAAATATCTAAATTTTTGT+TGG | + | 14996:11919-11938 | MS.gene071539:intron | 15.0% |
| !!! | TCTTTGCTTATATATAATTT+TGG | + | 14996:14355-14374 | MS.gene071539:intron | 15.0% |
| !!! | TTGAATTCTGAAATAAATTT+GGG | + | 14996:11670-11689 | MS.gene071539:intron | 15.0% |
| !!! | TTTCTCTTTCTAAAATTATA+AGG | - | 14996:12505-12524 | MS.gene071539:intergenic | 15.0% |
| !!! | TTTGAATTCTGAAATAAATT+TGG | + | 14996:11669-11688 | MS.gene071539:intron | 15.0% |
| !! | AAACAATAGTTAAAACAGAA+CGG | - | 14996:12410-12429 | MS.gene071539:intergenic | 20.0% |
| !! | ACGACTTCTAAATAAATTAT+TGG | - | 14996:14103-14122 | MS.gene071539:intergenic | 20.0% |
| !! | AGTAGAAAAATAAAGGAATT+GGG | - | 14996:14055-14074 | MS.gene071539:intergenic | 20.0% |
| !! | ATAAGTCAAAAAAGAATTCA+TGG | - | 14996:13836-13855 | MS.gene071539:intergenic | 20.0% |
| !! | ATGAGTAGATTATGAAAATT+TGG | - | 14996:14188-14207 | MS.gene071539:intergenic | 20.0% |
| !! | CAAAAACTAAAGAAATGAAA+GGG | - | 14996:14327-14346 | MS.gene071539:intergenic | 20.0% |
| !! | CGACTTCTAAATAAATTATT+GGG | - | 14996:14102-14121 | MS.gene071539:intergenic | 20.0% |
| !! | GATATATTCTAAATAGTTTG+TGG | + | 14996:12599-12618 | MS.gene071539:intron | 20.0% |
| !! | TAGTAGAAAAATAAAGGAAT+TGG | - | 14996:14056-14075 | MS.gene071539:intergenic | 20.0% |
| !! | TGAGTAGATTATGAAAATTT+GGG | - | 14996:14187-14206 | MS.gene071539:intergenic | 20.0% |
| !! | TTTATTTCAGAATTCAAATG+TGG | - | 14996:11667-11686 | MS.gene071539:intergenic | 20.0% |
| !! | TTTGCTCATTTATTTATCTT+AGG | + | 14996:13204-13223 | MS.gene071539:intron | 20.0% |
| !!! | ATTCCTTTATTTTTCTACTA+TGG | + | 14996:14056-14075 | MS.gene071539:intron | 20.0% |
| !!! | ATTCTTTTTTGACTTATTGA+TGG | + | 14996:13839-13858 | MS.gene071539:intron | 20.0% |
| !!! | ATTTTAGAAAGAGAAATAAG+TGG | + | 14996:12509-12528 | MS.gene071539:intron | 20.0% |
| !!! | TCATGATAATTGTGTTATTA+TGG | + | 14996:11392-11411 | MS.gene071539:intron | 20.0% |
| !!! | TTGCTTATATATAATTTTGG+TGG | + | 14996:14358-14377 | MS.gene071539:intron | 20.0% |
| ! | AAAATCAAAACCTGTACATT+GGG | - | 14996:13738-13757 | MS.gene071539:intergenic | 25.0% |
| ! | AAAATCAAGGATATTATGTC+CGG | + | 14996:11304-11323 | MS.gene071539:CDS | 25.0% |
| ! | AACTATATATTGAACTGTTG+GGG | + | 14996:12532-12551 | MS.gene071539:intron | 25.0% |
| ! | AACTCCAAATTATTCCAAAA+AGG | - | 14996:13970-13989 | MS.gene071539:intergenic | 25.0% |
| ! | AAGATACAGAAGAAATAACT+AGG | - | 14996:13535-13554 | MS.gene071539:intergenic | 25.0% |
| ! | ACTCCAAATTATTCCAAAAA+GGG | - | 14996:13969-13988 | MS.gene071539:intergenic | 25.0% |
| ! | ATGAGCAAATAAACACAAAA+CGG | - | 14996:13193-13212 | MS.gene071539:intergenic | 25.0% |
| ! | CAACCATAGTAGAAAAATAA+AGG | - | 14996:14062-14081 | MS.gene071539:intergenic | 25.0% |
| ! | GAACTATATATTGAACTGTT+GGG | + | 14996:12531-12550 | MS.gene071539:intron | 25.0% |
| ! | GCAAAAACTAAAGAAATGAA+AGG | - | 14996:14328-14347 | MS.gene071539:intergenic | 25.0% |
| ! | GCATTTATTAATGTTGTGAA+CGG | - | 14996:13917-13936 | MS.gene071539:intergenic | 25.0% |
| ! | GTTGAAGAAACATCTAATAT+TGG | - | 14996:12335-12354 | MS.gene071539:intergenic | 25.0% |
| ! | TAAAATCAAAACCTGTACAT+TGG | - | 14996:13739-13758 | MS.gene071539:intergenic | 25.0% |
| ! | TAACATTCAAGGAAAAAAGT+GGG | + | 14996:11812-11831 | MS.gene071539:intron | 25.0% |
| ! | TAAGCATATATCTTCAGAAA+GGG | + | 14996:11595-11614 | MS.gene071539:intron | 25.0% |
| ! | TATTGCATTACACATGAAAA+TGG | + | 14996:11743-11762 | MS.gene071539:intron | 25.0% |
| ! | TCAGATTCAAGTATTTATAC+AGG | - | 14996:11480-11499 | MS.gene071539:intergenic | 25.0% |
| ! | TGTAACACAATTAAAAAGGT+GGG | - | 14996:14129-14148 | MS.gene071539:intergenic | 25.0% |
| ! | TTAAGCATATATCTTCAGAA+AGG | + | 14996:11594-11613 | MS.gene071539:intron | 25.0% |
| ! | TTGTAACACAATTAAAAAGG+TGG | - | 14996:14130-14149 | MS.gene071539:intergenic | 25.0% |
| !! | AAGTTTTCTACATACAATCA+AGG | + | 14996:12695-12714 | MS.gene071539:CDS | 25.0% |
| !! | AGTTTTCTACATACAATCAA+GGG | + | 14996:12696-12715 | MS.gene071539:CDS | 25.0% |
| !! | TTTAGAATAGTTTGTCAACT+AGG | - | 14996:13939-13958 | MS.gene071539:intergenic | 25.0% |
| !!! | ATACCCTTTTTGGAATAATT+TGG | + | 14996:13963-13982 | MS.gene071539:intron | 25.0% |
| !!! | TTCTGAAATAAATTTGGGAT+TGG | + | 14996:11675-11694 | MS.gene071539:intron | 25.0% |
| !!! | TTTTGATAATTGTTGAGTTC+AGG | + | 14996:13249-13268 | MS.gene071539:intron | 25.0% |
| !!! | TTTTGGAATAATTTGGAGTT+GGG | + | 14996:13970-13989 | MS.gene071539:intron | 25.0% |
| !!! | TTTTTGGAATAATTTGGAGT+TGG | + | 14996:13969-13988 | MS.gene071539:intron | 25.0% |
| AAATCAAGGATATTATGTCC+GGG | + | 14996:11305-11324 | MS.gene071539:CDS | 30.0% | |
| AGGGAATCGTTATAATGAAT+TGG | + | 14996:12188-12207 | MS.gene071539:CDS | 30.0% | |
| ATGTTCTTTACAACCAACTT+AGG | - | 14996:14453-14472 | MS.gene071539:intergenic | 30.0% | |
| CAACCACAATTATGCAAAAA+TGG | - | 14996:13887-13906 | MS.gene071539:intergenic | 30.0% | |
| GAAGAAACATCTAATATTGG+TGG | - | 14996:12332-12351 | MS.gene071539:intergenic | 30.0% | |
| GGAACTATATATTGAACTGT+TGG | + | 14996:12530-12549 | MS.gene071539:intron | 30.0% | |
| GTAACATTCAAGGAAAAAAG+TGG | + | 14996:11811-11830 | MS.gene071539:intron | 30.0% | |
| TACCGAAAAGAAAAGGAATA+CGG | - | 14996:13130-13149 | MS.gene071539:intergenic | 30.0% | |
| TCACAAACAACATGAAACAA+TGG | - | 14996:11541-11560 | MS.gene071539:intergenic | 30.0% | |
| TCATATTTGGTTGGAAAATC+AGG | - | 14996:12952-12971 | MS.gene071539:intergenic | 30.0% | |
| TCTGATAATTGCATTGCATT+AGG | + | 14996:11495-11514 | MS.gene071539:intron | 30.0% | |
| TGAGCAAATAAACACAAAAC+GGG | - | 14996:13192-13211 | MS.gene071539:intergenic | 30.0% | |
| TGCTTTCATATTAGGAAAGT+TGG | - | 14996:12745-12764 | MS.gene071539:intergenic | 30.0% | |
| TTAGTAAGAAGTAAGACCTT+TGG | - | 14996:13783-13802 | MS.gene071539:intergenic | 30.0% | |
| ! | AAGAAATGAAAGGGTTTGTT+CGG | - | 14996:14318-14337 | MS.gene071539:intergenic | 30.0% |
| ! | AAGTTGGTTGTAAAGAACAT+GGG | + | 14996:14453-14472 | MS.gene071539:CDS | 30.0% |
| ! | CATTTTTGCATAATTGTGGT+TGG | + | 14996:13885-13904 | MS.gene071539:intron | 30.0% |
| ! | GAAAAGTGCATGATCATATT+TGG | - | 14996:12965-12984 | MS.gene071539:intergenic | 30.0% |
| ! | TCTAAACTTGATACCCTTTT+TGG | + | 14996:13953-13972 | MS.gene071539:intron | 30.0% |
| !! | AAATAGTTTGTGGTGTTTTC+AGG | + | 14996:12609-12628 | MS.gene071539:intron | 30.0% |
| !! | ATTAGGAAAGTTGGTTTGAT+AGG | - | 14996:12736-12755 | MS.gene071539:intergenic | 30.0% |
| !! | GTACTTGTTGCTTTCATATT+AGG | - | 14996:12753-12772 | MS.gene071539:intergenic | 30.0% |
| !! | TAAGTTGGTTGTAAAGAACA+TGG | + | 14996:14452-14471 | MS.gene071539:CDS | 30.0% |
| !! | TTAGGAAAGTTGGTTTGATA+GGG | - | 14996:12735-12754 | MS.gene071539:intergenic | 30.0% |
| !!! | AATTTGGGATTGGCTAATTT+TGG | + | 14996:11685-11704 | MS.gene071539:intron | 30.0% |
| !!! | CTTCTTTTTTACTCGAAACT+CGG | + | 14996:14244-14263 | MS.gene071539:intron | 30.0% |
| !!! | CTTTTTTCCTTGAATGTTAC+AGG | - | 14996:11811-11830 | MS.gene071539:intergenic | 30.0% |
| AAATAGTAGAGACACTCAAG+AGG | + | 14996:13462-13481 | MS.gene071539:intron | 35.0% | |
| AATTGACCAGATATGCAACA+AGG | - | 14996:11439-11458 | MS.gene071539:intergenic | 35.0% | |
| ACCGAAAAGAAAAGGAATAC+GGG | - | 14996:13129-13148 | MS.gene071539:intergenic | 35.0% | |
| ACTTCCATCTACATACTCAT+GGG | + | 14996:12134-12153 | MS.gene071539:CDS | 35.0% | |
| AGTGCATGATCATATTTGGT+TGG | - | 14996:12961-12980 | MS.gene071539:intergenic | 35.0% | |
| AGTTGCTCACTATTAGATGA+GGG | - | 14996:12289-12308 | MS.gene071539:intergenic | 35.0% | |
| ATAAGGTAGAATATAGCCAG+GGG | - | 14996:12106-12125 | MS.gene071539:intergenic | 35.0% | |
| ATACAATCAAGGGAAAGAGT+GGG | + | 14996:12706-12725 | MS.gene071539:intron | 35.0% | |
| ATATTCCAAATCCTCAGCTA+CGG | + | 14996:13401-13420 | MS.gene071539:intron | 35.0% | |
| ATTTGGTTGGAAAATCAGGA+AGG | - | 14996:12948-12967 | MS.gene071539:intergenic | 35.0% | |
| CAATAGTTAAAACAGAACGG+AGG | - | 14996:12407-12426 | MS.gene071539:intergenic | 35.0% | |
| CATAAGGTAGAATATAGCCA+GGG | - | 14996:12107-12126 | MS.gene071539:intergenic | 35.0% | |
| CATATCAGCTGTAAAGAACA+TGG | + | 14996:14422-14441 | MS.gene071539:CDS | 35.0% | |
| CCTAGAACAGTTAATGCAAA+AGG | + | 14996:12848-12867 | MS.gene071539:intron | 35.0% | |
| GATAGCATACCGAAAAGAAA+AGG | - | 14996:13137-13156 | MS.gene071539:intergenic | 35.0% | |
| GTACCTTGTTCTTATTCCAA+AGG | + | 14996:13764-13783 | MS.gene071539:intron | 35.0% | |
| GTATGTAGAAAACTTTGCGA+CGG | - | 14996:12690-12709 | MS.gene071539:intergenic | 35.0% | |
| TACTTCCATCTACATACTCA+TGG | + | 14996:12133-12152 | MS.gene071539:CDS | 35.0% | |
| TATGAAAGCAACAAGTACCA+AGG | + | 14996:12755-12774 | MS.gene071539:intron | 35.0% | |
| TATGGAGAGCAAGAAAATCA+AGG | + | 14996:11291-11310 | MS.gene071539:CDS | 35.0% | |
| TATGTAGAAAACTTTGCGAC+GGG | - | 14996:12689-12708 | MS.gene071539:intergenic | 35.0% | |
| TCACTTAATGAGCAGAATCA+AGG | + | 14996:12824-12843 | MS.gene071539:CDS | 35.0% | |
| TTGAGCATTTCAATACCTTG+CGG | - | 14996:13606-13625 | MS.gene071539:intergenic | 35.0% | |
| ! | AGTGGATTCACACAAAAGTA+TGG | + | 14996:13319-13338 | MS.gene071539:CDS | 35.0% |
| ! | ATGTTGATCTGTCCTGATTT+TGG | - | 14996:12923-12942 | MS.gene071539:intergenic | 35.0% |
| ! | CACACAAAAGTATGGATTTC+TGG | + | 14996:13327-13346 | MS.gene071539:CDS | 35.0% |
| ! | CCTTTTGCATTAACTGTTCT+AGG | - | 14996:12851-12870 | MS.gene071539:intergenic | 35.0% |
| ! | GTGTCTCTACTATTTGTTAC+AGG | - | 14996:13457-13476 | MS.gene071539:intergenic | 35.0% |
| ! | TCCCGTATTCCTTTTCTTTT+CGG | + | 14996:13125-13144 | MS.gene071539:CDS | 35.0% |
| ! | TTAAACTCTGGAGGTAATTC+TGG | + | 14996:12875-12894 | MS.gene071539:intron | 35.0% |
| ! | TTTTGCATAATTGTGGTTGG+AGG | + | 14996:13888-13907 | MS.gene071539:intron | 35.0% |
| !! | AAAGGTACTTTAAACTCTGG+AGG | + | 14996:12866-12885 | MS.gene071539:intron | 35.0% |
| !! | AGACCTTTGGAATAAGAACA+AGG | - | 14996:13770-13789 | MS.gene071539:intergenic | 35.0% |
| !! | ATTTCTGGCAGCAAGATAAA+TGG | + | 14996:13342-13361 | MS.gene071539:CDS | 35.0% |
| !! | CTATGGTTGATGTGTTCTTT+TGG | + | 14996:14073-14092 | MS.gene071539:intron | 35.0% |
| !! | GCAAAAGGTACTTTAAACTC+TGG | + | 14996:12863-12882 | MS.gene071539:intron | 35.0% |
| !! | GGACCATTTTTGCATAATTG+TGG | + | 14996:13881-13900 | MS.gene071539:intron | 35.0% |
| !! | TAGGAAAGTTGGTTTGATAG+GGG | - | 14996:12734-12753 | MS.gene071539:intergenic | 35.0% |
| !! | TTGATATGTGCCATTTGACA+GGG | - | 14996:13379-13398 | MS.gene071539:intergenic | 35.0% |
| !! | TTTGATATGTGCCATTTGAC+AGG | - | 14996:13380-13399 | MS.gene071539:intergenic | 35.0% |
| !!! | ACAGGTTATGGTGGATTTTA+TGG | + | 14996:11273-11292 | MS.gene071539:CDS | 35.0% |
| AAACAGAACGGAGGAAAGTA+AGG | - | 14996:12398-12417 | None:intergenic | 40.0% | |
| AAACAGATCGATCTACCACT+CGG | - | 14996:12223-12242 | None:intergenic | 40.0% | |
| AAACCTGTACATTGGGTATG+TGG | - | 14996:13731-13750 | None:intergenic | 40.0% | |
| AAAGCAACAAGTACCAAGGA+TGG | + | 14996:12759-12778 | MS.gene071539:intron | 40.0% | |
| AAGCAACAAGTACCAAGGAT+GGG | + | 14996:12760-12779 | MS.gene071539:intron | 40.0% | |
| ACGGATATTTCCCTGTCAAA+TGG | + | 14996:13366-13385 | MS.gene071539:intron | 40.0% | |
| AGCAACTCATCAGAAGTGAA+GGG | + | 14996:12302-12321 | MS.gene071539:CDS | 40.0% | |
| AGGTCATGCAAGCAGATAAT+GGG | + | 14996:11950-11969 | MS.gene071539:intron | 40.0% | |
| ATCAGCTGTAAAGAACATGG+AGG | + | 14996:14425-14444 | MS.gene071539:CDS | 40.0% | |
| ATCCTGTAAGTTTCTTGAGC+TGG | + | 14996:11351-11370 | MS.gene071539:intron | 40.0% | |
| CAGAATCGAATGGAAGAGAA+AGG | + | 14996:13093-13112 | MS.gene071539:CDS | 40.0% | |
| CATACAATCAAGGGAAAGAG+TGG | + | 14996:12705-12724 | MS.gene071539:intron | 40.0% | |
| CATTCAGATGCAATGCCAAA+GGG | + | 14996:12656-12675 | MS.gene071539:CDS | 40.0% | |
| CCATAAGGTAGAATATAGCC+AGG | - | 14996:12108-12127 | MS.gene071539:intergenic | 40.0% | |
| CCCAATTGGTTGTTGAAAGA+CGG | - | 14996:12080-12099 | MS.gene071539:intergenic | 40.0% | |
| CCGTCTTTCAACAACCAATT+GGG | + | 14996:12077-12096 | MS.gene071539:intron | 40.0% | |
| CCTGGCTATATTCTACCTTA+TGG | + | 14996:12105-12124 | MS.gene071539:intron | 40.0% | |
| CTCTGTTCTGTTAAGACCTA+CGG | + | 14996:13166-13185 | MS.gene071539:intron | 40.0% | |
| CTGATGTCCTGTAACATTCA+AGG | + | 14996:11801-11820 | MS.gene071539:intron | 40.0% | |
| CTTAGACAGCGACAAATAAC+AGG | - | 14996:12439-12458 | MS.gene071539:intergenic | 40.0% | |
| GAAGACTTAACAAGTGCACT+TGG | + | 14996:14390-14409 | MS.gene071539:CDS | 40.0% | |
| GAAGCTGAAACTCAGAAACA+AGG | + | 14996:12793-12812 | MS.gene071539:CDS | 40.0% | |
| GAATCCCATGAGTATGTAGA+TGG | - | 14996:12141-12160 | MS.gene071539:intergenic | 40.0% | |
| GAGTTGCTCACTATTAGATG+AGG | - | 14996:12290-12309 | MS.gene071539:intergenic | 40.0% | |
| GATGGAAGTAACTCACCATA+AGG | - | 14996:12123-12142 | MS.gene071539:intergenic | 40.0% | |
| GCTTGTGATCATTATTCTCG+AGG | - | 14996:13435-13454 | MS.gene071539:intergenic | 40.0% | |
| GTACACCTAATGGCAATAAG+AGG | + | 14996:13046-13065 | MS.gene071539:CDS | 40.0% | |
| GTTTCTTGAGCTGGTGTTTA+TGG | + | 14996:11360-11379 | MS.gene071539:intron | 40.0% | |
| TAGGTCATGCAAGCAGATAA+TGG | + | 14996:11949-11968 | MS.gene071539:intron | 40.0% | |
| TCAATGGTGACACCAAAATC+AGG | + | 14996:12908-12927 | MS.gene071539:CDS | 40.0% | |
| TCCGTCTTTCAACAACCAAT+TGG | + | 14996:12076-12095 | MS.gene071539:intron | 40.0% | |
| TGGCAGCAAGATAAATGGAA+CGG | + | 14996:13347-13366 | MS.gene071539:CDS | 40.0% | |
| TGTATCGAGAACATCGATAG+TGG | + | 14996:13641-13660 | MS.gene071539:CDS | 40.0% | |
| TTGCATCTGAATGGAGAAAC+AGG | - | 14996:12649-12668 | MS.gene071539:intergenic | 40.0% | |
| TTGGTTGTAAAGAACATGGG+AGG | + | 14996:14456-14475 | MS.gene071539:CDS | 40.0% | |
| ! | AATGAAAGGGTTTGTTCGGT+TGG | - | 14996:14314-14333 | MS.gene071539:intergenic | 40.0% |
| ! | AGAGCATCAAGTACGATGTT+GGG | + | 14996:13020-13039 | MS.gene071539:CDS | 40.0% |
| ! | CTGTTATTTGTCGCTGTCTA+AGG | + | 14996:12437-12456 | MS.gene071539:intron | 40.0% |
| ! | GGTTCCTGTTTTGCTTGTTT+TGG | - | 14996:12377-12396 | MS.gene071539:intergenic | 40.0% |
| ! | TAGAGCATCAAGTACGATGT+TGG | + | 14996:13019-13038 | MS.gene071539:CDS | 40.0% |
| ! | TAGTTGCCTTGTTGCATATC+TGG | + | 14996:11430-11449 | MS.gene071539:intron | 40.0% |
| ! | TTTTTACGAAACCCGTCAGA+AGG | + | 14996:13674-13693 | MS.gene071539:CDS | 40.0% |
| !! | GATTCTTTGAGACACATGCA+TGG | - | 14996:11567-11586 | MS.gene071539:intergenic | 40.0% |
| !! | TGTTTTCAGGCATCCATTTC+TGG | + | 14996:12622-12641 | MS.gene071539:intron | 40.0% |
| !! | TTCTGGAGTAAGAGTGTCAA+TGG | + | 14996:12892-12911 | MS.gene071539:intron | 40.0% |
| !! | TTTGTTCGGTTGGACTAGTT+TGG | - | 14996:14304-14323 | MS.gene071539:intergenic | 40.0% |
| ACCACACAAGATGTAGCACA+AGG | + | 14996:12168-12187 | MS.gene071539:CDS | 45.0% | |
| AGGACATCAGAGATGATGTC+GGG | - | 14996:11791-11810 | MS.gene071539:intergenic | 45.0% | |
| AGGATAATATGCCGTAGCTG+AGG | - | 14996:13415-13434 | MS.gene071539:intergenic | 45.0% | |
| ATAAACACAAAACGGGCCGT+AGG | - | 14996:13185-13204 | MS.gene071539:intergenic | 45.0% | |
| ATACTTCCTGTGAACACACC+TGG | + | 14996:12019-12038 | MS.gene071539:CDS | 45.0% | |
| ATATGCCGTAGCTGAGGATT+TGG | - | 14996:13409-13428 | MS.gene071539:intergenic | 45.0% | |
| ATCCACTCGTCCAATCATCT+CGG | - | 14996:13306-13325 | MS.gene071539:intergenic | 45.0% | |
| ATGCCACATACCCAATGTAC+AGG | + | 14996:13725-13744 | MS.gene071539:intron | 45.0% | |
| CACCAGCTCAAGAAACTTAC+AGG | - | 14996:11356-11375 | MS.gene071539:intergenic | 45.0% | |
| CAGGACATCAGAGATGATGT+CGG | - | 14996:11792-11811 | MS.gene071539:intergenic | 45.0% | |
| CCACACAAGATGTAGCACAA+GGG | + | 14996:12169-12188 | MS.gene071539:CDS | 45.0% | |
| CCAGCCAAAACAAGCAAAAC+AGG | + | 14996:12370-12389 | MS.gene071539:CDS | 45.0% | |
| CCATTCAGATGCAATGCCAA+AGG | + | 14996:12655-12674 | MS.gene071539:CDS | 45.0% | |
| CCTTTGGCATTGCATCTGAA+TGG | - | 14996:12658-12677 | MS.gene071539:intergenic | 45.0% | |
| CTGATATCCTGGCATGAGAT+AGG | - | 14996:11985-12004 | MS.gene071539:intergenic | 45.0% | |
| CTTATGTCCTATCTCATGCC+AGG | + | 14996:11975-11994 | MS.gene071539:CDS | 45.0% | |
| GAACATGGAGGATCCTAAGT+TGG | + | 14996:14437-14456 | MS.gene071539:CDS | 45.0% | |
| GAGCAACTCATCAGAAGTGA+AGG | + | 14996:12301-12320 | MS.gene071539:CDS | 45.0% | |
| GGATGAGTGCATGTGATTGT+GGG | + | 14996:13860-13879 | MS.gene071539:intron | 45.0% | |
| GTACATTGGGTATGTGGCAT+CGG | - | 14996:13725-13744 | MS.gene071539:intergenic | 45.0% | |
| TACCTTGCGGAAACTGAATC+TGG | - | 14996:13593-13612 | MS.gene071539:intergenic | 45.0% | |
| TCAGGATGCACAGAATCGAA+TGG | + | 14996:13083-13102 | MS.gene071539:CDS | 45.0% | |
| TCGAGCCTCTTATTGCCATT+AGG | - | 14996:13054-13073 | MS.gene071539:intergenic | 45.0% | |
| TCTCAGTACTAACCCATCCT+TGG | - | 14996:12775-12794 | MS.gene071539:intergenic | 45.0% | |
| TCTCTTGCATGACCTTCTGA+CGG | - | 14996:13689-13708 | MS.gene071539:intergenic | 45.0% | |
| TGAACTGTTGGGGATTTCGT+AGG | + | 14996:12542-12561 | MS.gene071539:intron | 45.0% | |
| TGGAGAAACAGGACCAGAAA+TGG | - | 14996:12638-12657 | MS.gene071539:intergenic | 45.0% | |
| TGGATGAGTGCATGTGATTG+TGG | + | 14996:13859-13878 | MS.gene071539:intron | 45.0% | |
| TTCCAGATTCAGTTTCCGCA+AGG | + | 14996:13588-13607 | MS.gene071539:intron | 45.0% | |
| ! | ACGCTAGTGGTCAACTTTTG+TGG | + | 14996:13275-13294 | MS.gene071539:CDS | 45.0% |
| !!! | CCTGTTTTGCTTGTTTTGGC+TGG | - | 14996:12373-12392 | MS.gene071539:intergenic | 45.0% |
| AAATCCATAGCATCAGCGCC+CGG | - | 14996:11326-11345 | MS.gene071539:intergenic | 50.0% | |
| ACAACCAATTGGGTATCCCC+TGG | + | 14996:12087-12106 | MS.gene071539:intron | 50.0% | |
| ATAGCCAGGGGATACCCAAT+TGG | - | 14996:12094-12113 | MS.gene071539:intergenic | 50.0% | |
| CAGGAGGGTAAACCTGATAC+TGG | - | 14996:12054-12073 | MS.gene071539:intergenic | 50.0% | |
| CAGTATCAGGTTTACCCTCC+TGG | + | 14996:12052-12071 | MS.gene071539:CDS | 50.0% | |
| CCCTTGTGCTACATCTTGTG+TGG | - | 14996:12172-12191 | MS.gene071539:intergenic | 50.0% | |
| CTCATGCCAGGATATCAGAC+TGG | + | 14996:11987-12006 | MS.gene071539:CDS | 50.0% | |
| CTCTTGCATGACCTTCTGAC+GGG | - | 14996:13688-13707 | MS.gene071539:intergenic | 50.0% | |
| GAGGCTCGACAATGCATTTC+AGG | + | 14996:13065-13084 | MS.gene071539:CDS | 50.0% | |
| GAGTAGCCAGTCTGATATCC+TGG | - | 14996:11996-12015 | MS.gene071539:intergenic | 50.0% | |
| GGTTGTTGAAAGACGGAACC+AGG | - | 14996:12073-12092 | MS.gene071539:intergenic | 50.0% | |
| GTTGAAAGACGGAACCAGGA+GGG | - | 14996:12069-12088 | MS.gene071539:intergenic | 50.0% | |
| GTTTCTTCGCAGAGTCGTAC+TGG | + | 14996:12239-12258 | MS.gene071539:intron | 50.0% | |
| TGAGTTCAGGTCAACGCTAG+TGG | + | 14996:13262-13281 | MS.gene071539:intron | 50.0% | |
| TGATACTGGACATCGACACC+AGG | - | 14996:12040-12059 | MS.gene071539:intergenic | 50.0% | |
| TGTGGAGTAGCCGAGATGAT+TGG | + | 14996:13293-13312 | MS.gene071539:CDS | 50.0% | |
| TGTTGAAAGACGGAACCAGG+AGG | - | 14996:12070-12089 | MS.gene071539:intergenic | 50.0% | |
| TGTTGGGCGAGTACACCTAA+TGG | + | 14996:13036-13055 | MS.gene071539:CDS | 50.0% | |
| !! | TGGTGTCGATGTCCAGTATC+AGG | + | 14996:12039-12058 | MS.gene071539:CDS | 50.0% |
| AATTGGCCACGTACACCGAG+TGG | + | 14996:12205-12224 | MS.gene071539:intron | 55.0% | |
| AGCCGAGATGATTGGACGAG+TGG | + | 14996:13301-13320 | MS.gene071539:CDS | 55.0% | |
| GCGACGGGAAAAGAACCCTT+TGG | - | 14996:12674-12693 | MS.gene071539:intergenic | 55.0% | |
| TCGACACCAGGTGTGTTCAC+AGG | - | 14996:12028-12047 | MS.gene071539:intergenic | 55.0% | |
| !! | GATCTACCACTCGGTGTACG+TGG | - | 14996:12214-12233 | MS.gene071539:intergenic | 55.0% |
| !! | ATGTCCGGGCGCTGATGCTA+TGG | + | 14996:11319-11338 | MS.gene071539:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 14996 | gene | 11267 | 14485 | 11267 | ID=MS.gene071539 |
| 14996 | mRNA | 11267 | 14485 | 11267 | ID=MS.gene071539.t1;Parent=MS.gene071539 |
| 14996 | exon | 11267 | 11355 | 11267 | ID=MS.gene071539.t1.exon1;Parent=MS.gene071539.t1 |
| 14996 | CDS | 11267 | 11355 | 11267 | ID=cds.MS.gene071539.t1;Parent=MS.gene071539.t1 |
| 14996 | exon | 11952 | 12078 | 11952 | ID=MS.gene071539.t1.exon2;Parent=MS.gene071539.t1 |
| 14996 | CDS | 11952 | 12078 | 11952 | ID=cds.MS.gene071539.t1;Parent=MS.gene071539.t1 |
| 14996 | exon | 12132 | 12223 | 12132 | ID=MS.gene071539.t1.exon3;Parent=MS.gene071539.t1 |
| 14996 | CDS | 12132 | 12223 | 12132 | ID=cds.MS.gene071539.t1;Parent=MS.gene071539.t1 |
| 14996 | exon | 12253 | 12408 | 12253 | ID=MS.gene071539.t1.exon4;Parent=MS.gene071539.t1 |
| 14996 | CDS | 12253 | 12408 | 12253 | ID=cds.MS.gene071539.t1;Parent=MS.gene071539.t1 |
| 14996 | exon | 12631 | 12723 | 12631 | ID=MS.gene071539.t1.exon5;Parent=MS.gene071539.t1 |
| 14996 | CDS | 12631 | 12723 | 12631 | ID=cds.MS.gene071539.t1;Parent=MS.gene071539.t1 |
| 14996 | exon | 12763 | 12856 | 12763 | ID=MS.gene071539.t1.exon6;Parent=MS.gene071539.t1 |
| 14996 | CDS | 12763 | 12856 | 12763 | ID=cds.MS.gene071539.t1;Parent=MS.gene071539.t1 |
| 14996 | exon | 12904 | 13146 | 12904 | ID=MS.gene071539.t1.exon7;Parent=MS.gene071539.t1 |
| 14996 | CDS | 12904 | 13146 | 12904 | ID=cds.MS.gene071539.t1;Parent=MS.gene071539.t1 |
| 14996 | exon | 13266 | 13379 | 13266 | ID=MS.gene071539.t1.exon8;Parent=MS.gene071539.t1 |
| 14996 | CDS | 13266 | 13379 | 13266 | ID=cds.MS.gene071539.t1;Parent=MS.gene071539.t1 |
| 14996 | exon | 13594 | 13695 | 13594 | ID=MS.gene071539.t1.exon9;Parent=MS.gene071539.t1 |
| 14996 | CDS | 13594 | 13695 | 13594 | ID=cds.MS.gene071539.t1;Parent=MS.gene071539.t1 |
| 14996 | exon | 14384 | 14485 | 14384 | ID=MS.gene071539.t1.exon10;Parent=MS.gene071539.t1 |
| 14996 | CDS | 14384 | 14485 | 14384 | ID=cds.MS.gene071539.t1;Parent=MS.gene071539.t1 |
| Gene Sequence |
| Protein sequence |
