Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071608.t1 | XP_003629259.1 | 88.4 | 404 | 43 | 2 | 1 | 401 | 1 | 403 | 3.10E-161 | 578.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071608.t1 | Q94K80 | 32.7 | 367 | 204 | 12 | 46 | 400 | 101 | 436 | 1.2e-17 | 92.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071608.t1 | G7LB62 | 88.4 | 404 | 43 | 2 | 1 | 401 | 1 | 403 | 2.2e-161 | 578.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04995 | MS.gene071608 | 0.802099 | 6.59E-49 | -1.69E-46 |
| MS.gene050750 | MS.gene071608 | -0.807612 | 4.64E-50 | -1.69E-46 |
| MS.gene050953 | MS.gene071608 | -0.807089 | 5.99E-50 | -1.69E-46 |
| MS.gene052176 | MS.gene071608 | -0.826366 | 2.82E-54 | -1.69E-46 |
| MS.gene052309 | MS.gene071608 | 0.862333 | 5.46E-64 | -1.69E-46 |
| MS.gene052358 | MS.gene071608 | 0.902407 | 1.00E-78 | -1.69E-46 |
| MS.gene052361 | MS.gene071608 | 0.817806 | 2.72E-52 | -1.69E-46 |
| MS.gene052965 | MS.gene071608 | 0.837735 | 4.36E-57 | -1.69E-46 |
| MS.gene053298 | MS.gene071608 | -0.803953 | 2.73E-49 | -1.69E-46 |
| MS.gene054405 | MS.gene071608 | -0.804494 | 2.10E-49 | -1.69E-46 |
| MS.gene055784 | MS.gene071608 | 0.826012 | 3.43E-54 | -1.69E-46 |
| MS.gene056091 | MS.gene071608 | -0.811508 | 6.76E-51 | -1.69E-46 |
| MS.gene056969 | MS.gene071608 | 0.80526 | 1.45E-49 | -1.69E-46 |
| MS.gene057079 | MS.gene071608 | -0.831191 | 1.92E-55 | -1.69E-46 |
| MS.gene05954 | MS.gene071608 | -0.839284 | 1.74E-57 | -1.69E-46 |
| MS.gene060572 | MS.gene071608 | -0.831095 | 2.03E-55 | -1.69E-46 |
| MS.gene060634 | MS.gene071608 | 0.813102 | 3.03E-51 | -1.69E-46 |
| MS.gene061040 | MS.gene071608 | 0.886387 | 3.58E-72 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071608.t1 | MTR_8g075120 | 94.307 | 404 | 19 | 2 | 1 | 401 | 1 | 403 | 0.0 | 679 |
| MS.gene071608.t1 | MTR_5g022790 | 44.470 | 434 | 179 | 17 | 4 | 400 | 15 | 423 | 6.06e-88 | 280 |
| MS.gene071608.t1 | MTR_5g022790 | 48.822 | 297 | 114 | 11 | 126 | 400 | 8 | 288 | 2.73e-75 | 239 |
| MS.gene071608.t1 | MTR_5g022790 | 48.822 | 297 | 114 | 11 | 126 | 400 | 8 | 288 | 5.03e-74 | 240 |
| MS.gene071608.t1 | MTR_1g025920 | 38.298 | 423 | 198 | 18 | 17 | 407 | 91 | 482 | 8.56e-49 | 173 |
| MS.gene071608.t1 | MTR_1g025920 | 38.702 | 416 | 192 | 18 | 17 | 400 | 91 | 475 | 2.14e-48 | 172 |
| MS.gene071608.t1 | MTR_3g114450 | 33.596 | 381 | 177 | 17 | 59 | 399 | 88 | 432 | 8.51e-34 | 131 |
| MS.gene071608.t1 | MTR_3g114340 | 34.324 | 370 | 164 | 19 | 69 | 399 | 33 | 362 | 3.88e-30 | 120 |
| MS.gene071608.t1 | MTR_3g114450 | 31.755 | 359 | 169 | 17 | 59 | 377 | 88 | 410 | 2.17e-23 | 101 |
| MS.gene071608.t1 | MTR_5g088200 | 45.161 | 93 | 50 | 1 | 310 | 401 | 290 | 382 | 6.12e-17 | 83.6 |
| MS.gene071608.t1 | MTR_7g117595 | 35.455 | 110 | 69 | 1 | 299 | 406 | 80 | 189 | 6.74e-13 | 70.1 |
| MS.gene071608.t1 | MTR_7g117595 | 35.455 | 110 | 69 | 1 | 299 | 406 | 80 | 189 | 8.87e-13 | 70.1 |
| MS.gene071608.t1 | MTR_7g117595 | 35.455 | 110 | 69 | 1 | 299 | 406 | 80 | 189 | 8.72e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071608.t1 | AT4G35890 | 35.052 | 388 | 191 | 16 | 37 | 400 | 86 | 436 | 7.33e-44 | 160 |
| MS.gene071608.t1 | AT4G35890 | 33.699 | 365 | 181 | 16 | 37 | 377 | 86 | 413 | 2.51e-36 | 137 |
| MS.gene071608.t1 | AT5G66100 | 32.918 | 401 | 193 | 18 | 26 | 400 | 52 | 402 | 9.79e-33 | 128 |
| MS.gene071608.t1 | AT5G66100 | 30.341 | 323 | 158 | 17 | 49 | 345 | 66 | 347 | 3.90e-11 | 64.3 |
Find 0 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTACTATTTTTTGATT+TGG | - | 54942:12615-12634 | MS.gene071608:CDS | 10.0% |
| !!! | ATTGTAATTTTTTTAAATAG+GGG | + | 54942:12327-12346 | MS.gene071608:intergenic | 10.0% |
| !! | ATAAAATTAGAAAATATGAG+TGG | - | 54942:12696-12715 | MS.gene071608:CDS | 15.0% |
| !! | ATTCAATAACAATTTGTATT+AGG | - | 54942:12256-12275 | MS.gene071608:intron | 15.0% |
| !! | CAAAACAATAAAATGAAAAT+TGG | + | 54942:11868-11887 | MS.gene071608:intergenic | 15.0% |
| !! | GATAATATCAATTATAATGT+GGG | - | 54942:12911-12930 | MS.gene071608:intron | 15.0% |
| !! | TCAAAAGATTATTAATACAA+AGG | + | 54942:12580-12599 | MS.gene071608:intergenic | 15.0% |
| !! | TGATAATATCAATTATAATG+TGG | - | 54942:12910-12929 | MS.gene071608:intron | 15.0% |
| !! | TTTAATTAAATCTTTGACAT+GGG | - | 54942:12068-12087 | MS.gene071608:CDS | 15.0% |
| !!! | AATCTGTTACTTTTATTTTT+AGG | - | 54942:13169-13188 | MS.gene071608:CDS | 15.0% |
| !!! | ATCTGTTACTTTTATTTTTA+GGG | - | 54942:13170-13189 | MS.gene071608:CDS | 15.0% |
| !!! | CTTTTCTTAAACAATTTTAA+TGG | - | 54942:13359-13378 | MS.gene071608:CDS | 15.0% |
| !!! | GTATTAATAATCTTTTGATA+TGG | - | 54942:12582-12601 | MS.gene071608:CDS | 15.0% |
| !!! | TTGTAATTTTTTTAAATAGG+GGG | + | 54942:12326-12345 | MS.gene071608:intergenic | 15.0% |
| !!! | TTTTGTCATTTTTTTTCATA+GGG | - | 54942:12502-12521 | MS.gene071608:CDS | 15.0% |
| !! | AAAAATATTGCAGAAGATAT+CGG | + | 54942:11761-11780 | MS.gene071608:intergenic | 20.0% |
| !! | AATAAATAAGCAACTAAAGT+GGG | + | 54942:10822-10841 | MS.gene071608:intergenic | 20.0% |
| !! | ATTCAATAAAGTAAGTTGTT+TGG | - | 54942:12027-12046 | MS.gene071608:intron | 20.0% |
| !! | GCATATAACTGAAATATATT+TGG | - | 54942:10932-10951 | MS.gene071608:intron | 20.0% |
| !! | GTTTAATTAAATCTTTGACA+TGG | - | 54942:12067-12086 | MS.gene071608:CDS | 20.0% |
| !! | TAATAAATAAGCAACTAAAG+TGG | + | 54942:10823-10842 | MS.gene071608:intergenic | 20.0% |
| !!! | AATATATTTGGAATTGTTAC+TGG | - | 54942:10944-10963 | MS.gene071608:intron | 20.0% |
| !!! | ATTTTTAGGGTGATAAAATA+AGG | - | 54942:13183-13202 | MS.gene071608:CDS | 20.0% |
| !!! | CTTTTGTCATTTTTTTTCAT+AGG | - | 54942:12501-12520 | MS.gene071608:CDS | 20.0% |
| !!! | GCTCATAATAGAAATTTTAA+CGG | - | 54942:11460-11479 | MS.gene071608:intron | 20.0% |
| !!! | TTCCTTTATTTATCAAGTTA+GGG | - | 54942:10875-10894 | MS.gene071608:CDS | 20.0% |
| !!! | TTTGTCATTTTTTTTCATAG+GGG | - | 54942:12503-12522 | MS.gene071608:CDS | 20.0% |
| !!! | TTTTAATGGAGAATATTGTT+CGG | - | 54942:13373-13392 | MS.gene071608:CDS | 20.0% |
| ! | AAATTAGAAAATATGAGTGG+AGG | - | 54942:12699-12718 | MS.gene071608:CDS | 25.0% |
| ! | AACCCTAACTTGATAAATAA+AGG | + | 54942:10880-10899 | MS.gene071608:intergenic | 25.0% |
| ! | AAGTGAAAATCAAAAGGATT+TGG | + | 54942:12807-12826 | MS.gene071608:intergenic | 25.0% |
| ! | AATCCTGCTATTAAATTTAG+AGG | + | 54942:12010-12029 | MS.gene071608:intergenic | 25.0% |
| ! | ATCATATTTCCCTTATGTTA+GGG | - | 54942:12444-12463 | MS.gene071608:CDS | 25.0% |
| ! | GATCTGGAAACAAATAAAAA+TGG | - | 54942:13296-13315 | MS.gene071608:CDS | 25.0% |
| ! | GTACTAAATTAGAATGTTTG+TGG | + | 54942:13088-13107 | MS.gene071608:intergenic | 25.0% |
| ! | GTGAAAAAGTGAAAATCAAA+AGG | + | 54942:12813-12832 | MS.gene071608:intergenic | 25.0% |
| ! | TAGAAGAACAATCATAAAAG+AGG | + | 54942:12664-12683 | MS.gene071608:intergenic | 25.0% |
| ! | TGACATAATCAATTTATCGT+TGG | - | 54942:12142-12161 | MS.gene071608:CDS | 25.0% |
| !! | GTTCCTTTATTTATCAAGTT+AGG | - | 54942:10874-10893 | MS.gene071608:CDS | 25.0% |
| !! | TTAATCAATATCTTTTACCC+TGG | - | 54942:12186-12205 | MS.gene071608:intron | 25.0% |
| !! | TTGTTTGGTGATAATTGATT+TGG | - | 54942:12042-12061 | MS.gene071608:CDS | 25.0% |
| !!! | AAAATCGCAACTTTTTGAAA+CGG | + | 54942:12301-12320 | MS.gene071608:intergenic | 25.0% |
| !!! | AATGCATTTTTTTGTCTCTT+AGG | - | 54942:12963-12982 | MS.gene071608:intron | 25.0% |
| !!! | TGTTTTGAGTGTTGATTTTA+GGG | - | 54942:11064-11083 | MS.gene071608:intron | 25.0% |
| !!! | TTGTCATTTTTTTTCATAGG+GGG | - | 54942:12504-12523 | MS.gene071608:CDS | 25.0% |
| !!! | TTGTTTTGAGTGTTGATTTT+AGG | - | 54942:11063-11082 | MS.gene071608:intron | 25.0% |
| !!! | TTTCTGTTTTTGTTATGTTG+TGG | - | 54942:11022-11041 | MS.gene071608:intron | 25.0% |
| ACAAATAAAAATGGTGCATC+TGG | - | 54942:13305-13324 | MS.gene071608:CDS | 30.0% | |
| CAACTCATCAGAAAACTTAT+CGG | - | 54942:11161-11180 | MS.gene071608:intron | 30.0% | |
| GAATATCCAAAACATTGATC+TGG | - | 54942:13280-13299 | MS.gene071608:CDS | 30.0% | |
| GATCATATTTCCCTTATGTT+AGG | - | 54942:12443-12462 | MS.gene071608:CDS | 30.0% | |
| GTTCCTCTAAATTTAATAGC+AGG | - | 54942:12004-12023 | MS.gene071608:intron | 30.0% | |
| TCATATTTCCCTTATGTTAG+GGG | - | 54942:12445-12464 | MS.gene071608:CDS | 30.0% | |
| TCGCAACTTCTTAAAACTTA+AGG | - | 54942:12535-12554 | MS.gene071608:CDS | 30.0% | |
| TGACAACATTCAGATTGTAT+TGG | - | 54942:12999-13018 | MS.gene071608:intron | 30.0% | |
| TTAACGGTAGAGACAATTAT+AGG | - | 54942:11476-11495 | MS.gene071608:intron | 30.0% | |
| TTCAGGTAACGTTTATCTAT+TGG | - | 54942:11836-11855 | MS.gene071608:intron | 30.0% | |
| ! | GTTTCAAAAAGTTGCGATTT+TGG | - | 54942:12300-12319 | MS.gene071608:CDS | 30.0% |
| ! | TTGTTTCCAGATCAATGTTT+TGG | + | 54942:13289-13308 | MS.gene071608:intergenic | 30.0% |
| ! | TTTAGGGTGATAAAATAAGG+AGG | - | 54942:13186-13205 | MS.gene071608:CDS | 30.0% |
| !!! | AAATCGCAACTTTTTGAAAC+GGG | + | 54942:12300-12319 | MS.gene071608:intergenic | 30.0% |
| !!! | AACTTTTTTGCGAAGATAAG+GGG | - | 54942:12414-12433 | MS.gene071608:CDS | 30.0% |
| !!! | CAACTTTTTTGCGAAGATAA+GGG | - | 54942:12413-12432 | MS.gene071608:CDS | 30.0% |
| !!! | GTTTTAAGAAGTTGCGATTT+TGG | + | 54942:12532-12551 | MS.gene071608:intergenic | 30.0% |
| !!! | TGTCATTTTTTTTCATAGGG+GGG | - | 54942:12505-12524 | MS.gene071608:CDS | 30.0% |
| AACAACGATCTTCAAATCCA+GGG | + | 54942:12206-12225 | MS.gene071607:intergenic | 35.0% | |
| AATTCAAACACGTCTTCCAA+TGG | - | 54942:11190-11209 | MS.gene071608:intron | 35.0% | |
| ACAAACTGTGGAACAAATCT+TGG | + | 54942:11505-11524 | MS.gene071608:intergenic | 35.0% | |
| ACCAGATTGACTACTATTTC+AGG | - | 54942:11819-11838 | MS.gene071608:intron | 35.0% | |
| ACCTGAAATAGTAGTCAATC+TGG | + | 54942:11823-11842 | MS.gene071608:intergenic | 35.0% | |
| AGAGCATATTTCCCTAAACA+GGG | - | 54942:12474-12493 | MS.gene071608:CDS | 35.0% | |
| ATAAAATAAGGAGGCGGAAT+TGG | - | 54942:13195-13214 | MS.gene071608:CDS | 35.0% | |
| CAATCATAACTCTGCTCAAA+TGG | - | 54942:11276-11295 | MS.gene071608:intron | 35.0% | |
| CATATTTCCCTTATGTTAGG+GGG | - | 54942:12446-12465 | MS.gene071608:CDS | 35.0% | |
| CTAACGCTTCAAATGATGTA+TGG | - | 54942:11689-11708 | MS.gene071608:intron | 35.0% | |
| GAAAAAAATACCTGCGATTG+AGG | + | 54942:10798-10817 | MS.gene071608:intergenic | 35.0% | |
| TATCCATATGAGCCCATATA+AGG | + | 54942:11589-11608 | MS.gene071608:intergenic | 35.0% | |
| TCACAGTTTCATAACGTCAA+TGG | - | 54942:13230-13249 | MS.gene071608:CDS | 35.0% | |
| TTAGTATGCAACTCAGAATC+CGG | + | 54942:11791-11810 | MS.gene071608:intergenic | 35.0% | |
| TTGAGCAGAGTTATGATTGT+GGG | + | 54942:11275-11294 | MS.gene071608:intergenic | 35.0% | |
| TTTGAGCAGAGTTATGATTG+TGG | + | 54942:11276-11295 | MS.gene071608:intergenic | 35.0% | |
| ! | AAGAGCATATTTCCCTAAAC+AGG | - | 54942:12473-12492 | MS.gene071608:CDS | 35.0% |
| ! | CATACATCATTTGAAGCGTT+AGG | + | 54942:11691-11710 | MS.gene071608:intergenic | 35.0% |
| ! | CGATAAGTTTTCTGATGAGT+TGG | + | 54942:11163-11182 | MS.gene071608:intergenic | 35.0% |
| ! | GATTTGTTCCACAGTTTGTA+AGG | - | 54942:11506-11525 | MS.gene071608:intron | 35.0% |
| ! | TAGTATTGGGCATGATTAGT+AGG | + | 54942:11541-11560 | MS.gene071608:intergenic | 35.0% |
| !!! | GCAACTTTTTTGCGAAGATA+AGG | - | 54942:12412-12431 | MS.gene071608:CDS | 35.0% |
| !!! | GTCATTTTTTTTCATAGGGG+GGG | - | 54942:12506-12525 | MS.gene071608:CDS | 35.0% |
| !!! | TGCAATATTTTTTCCACCTC+CGG | - | 54942:11769-11788 | MS.gene071608:intron | 35.0% |
| AAGAGGAACATGGATGATCA+GGG | - | 54942:11977-11996 | MS.gene071608:intron | 40.0% | |
| AAGCAAGTTAAGGATACTGC+AGG | - | 54942:11115-11134 | MS.gene071608:intron | 40.0% | |
| AAGGTCGATAAATCCAAGGA+AGG | + | 54942:10774-10793 | MS.gene071608:intergenic | 40.0% | |
| ACAAAAGTGACCCCTGTTTA+GGG | + | 54942:12488-12507 | MS.gene071608:intergenic | 40.0% | |
| AGGGTGATAAAATAAGGAGG+CGG | - | 54942:13189-13208 | MS.gene071608:CDS | 40.0% | |
| ATGGGCTCATATGGATATCA+TGG | - | 54942:11592-11611 | MS.gene071608:intron | 40.0% | |
| CAACAACGATCTTCAAATCC+AGG | + | 54942:12207-12226 | MS.gene071608:intergenic | 40.0% | |
| CACATACTTGAAGAGGAACA+TGG | - | 54942:11967-11986 | MS.gene071608:intron | 40.0% | |
| CATATGAGCCCATATAAGGT+GGG | + | 54942:11585-11604 | MS.gene071608:intergenic | 40.0% | |
| GAGCATATTTCCCTAAACAG+GGG | - | 54942:12475-12494 | MS.gene071608:CDS | 40.0% | |
| GTCTGCTTCCAGAGTTAAAA+TGG | + | 54942:11408-11427 | MS.gene071608:intergenic | 40.0% | |
| TATTGGGCATGATTAGTAGG+CGG | + | 54942:11538-11557 | MS.gene071608:intergenic | 40.0% | |
| TCACTGCAAAAGACAAGTTG+TGG | + | 54942:11929-11948 | MS.gene071608:intergenic | 40.0% | |
| TGGAGAATATTGTTCGGATG+AGG | - | 54942:13379-13398 | MS.gene071608:CDS | 40.0% | |
| TTCATCTGTTGTTGAAGTGC+AGG | - | 54942:13035-13054 | MS.gene071608:intron | 40.0% | |
| ! | CTTTTGACCCCCTAACATAA+GGG | + | 54942:12456-12475 | MS.gene071608:intergenic | 40.0% |
| ! | GAAGATATCGGTTGCACAAA+CGG | + | 54942:11749-11768 | MS.gene071608:intergenic | 40.0% |
| ! | TCTTTTGACCCCCTAACATA+AGG | + | 54942:12457-12476 | MS.gene071608:intergenic | 40.0% |
| !! | GTATCCTTAACTTGCTTCTG+AGG | + | 54942:11112-11131 | MS.gene071608:intergenic | 40.0% |
| !!! | GAGTGTTGATTTTAGGGTAC+TGG | - | 54942:11070-11089 | MS.gene071608:intron | 40.0% |
| !!! | GGTTCTCACCATTTTAACTC+TGG | - | 54942:11397-11416 | MS.gene071608:intron | 40.0% |
| !!! | TCAGCAATTTTGGGACGAAA+GGG | + | 54942:12356-12375 | MS.gene071608:intergenic | 40.0% |
| AAATACCTGCGATTGAGGCA+AGG | + | 54942:10793-10812 | MS.gene071607:intergenic | 45.0% | |
| AATTCATCCAGGAACCGGAA+TGG | - | 54942:11349-11368 | MS.gene071608:intron | 45.0% | |
| AGGCAAGGTCGATAAATCCA+AGG | + | 54942:10778-10797 | MS.gene071608:intergenic | 45.0% | |
| ATGGAACATCTACCAAGAGC+TGG | - | 54942:11295-11314 | MS.gene071608:intron | 45.0% | |
| CCACCAATCCCACCTTATAT+GGG | - | 54942:11574-11593 | MS.gene071608:intron | 45.0% | |
| CCACCTTATATGGGCTCATA+TGG | - | 54942:11583-11602 | MS.gene071608:intron | 45.0% | |
| CCATATGAGCCCATATAAGG+TGG | + | 54942:11586-11605 | MS.gene071608:intergenic | 45.0% | |
| CTCTCCTCAGAAGCAAGTTA+AGG | - | 54942:11105-11124 | MS.gene071608:intron | 45.0% | |
| GAAGACATCGACAACACTTC+CGG | - | 54942:10600-10619 | MS.gene071608:intron | 45.0% | |
| GAAGAGGAACATGGATGATC+AGG | - | 54942:11976-11995 | MS.gene071608:intron | 45.0% | |
| GAAGGTTTCACCAATTCCTG+TGG | + | 54942:10756-10775 | MS.gene071608:intergenic | 45.0% | |
| GAATATTGTTCGGATGAGGC+AGG | - | 54942:13383-13402 | MS.gene071608:CDS | 45.0% | |
| GACAAAAGTGACCCCTGTTT+AGG | + | 54942:12489-12508 | MS.gene071608:intergenic | 45.0% | |
| GCAACGACACATACTTGAAG+AGG | - | 54942:11960-11979 | MS.gene071608:intron | 45.0% | |
| GGAATTGGTGAAACCTTCCT+TGG | - | 54942:10758-10777 | MS.gene071608:intron | 45.0% | |
| TCAAACACGTCTTCCAATGG+AGG | - | 54942:11193-11212 | MS.gene071608:intron | 45.0% | |
| TCCGGTTCCTGGATGAATTT+CGG | + | 54942:11348-11367 | MS.gene071608:intergenic | 45.0% | |
| TGCACAAACGGTACACTTCT+CGG | + | 54942:11737-11756 | MS.gene071608:intergenic | 45.0% | |
| TTGGAGGGTTTACTCCAAAC+AGG | + | 54942:10636-10655 | MS.gene071608:intergenic | 45.0% | |
| ! | GCGACTATGACCCCTTTTTA+GGG | + | 54942:12394-12413 | MS.gene071608:intergenic | 45.0% |
| ! | GGCGTCTTCTCAGCAATTTT+GGG | + | 54942:12365-12384 | MS.gene071608:intergenic | 45.0% |
| ! | TGCGACTATGACCCCTTTTT+AGG | + | 54942:12395-12414 | MS.gene071608:intergenic | 45.0% |
| ! | TGGCGTCTTCTCAGCAATTT+TGG | + | 54942:12366-12385 | MS.gene071608:intergenic | 45.0% |
| !! | TTGGCGGATTCAGATAAAGC+AGG | + | 54942:10696-10715 | MS.gene071608:intergenic | 45.0% |
| !!! | CAGCAATTTTGGGACGAAAG+GGG | + | 54942:12355-12374 | MS.gene071608:intergenic | 45.0% |
| !!! | CTCAGCAATTTTGGGACGAA+AGG | + | 54942:12357-12376 | MS.gene071608:intergenic | 45.0% |
| !!! | AAATTGTAATTTTTTTAAAT+AGG | + | 54942:12329-12348 | MS.gene071608:intergenic | 5.0% |
| !!! | AATTGTAATTTTTTTAAATA+GGG | + | 54942:12328-12347 | MS.gene071608:intergenic | 5.0% |
| !!! | ATTTAAAAAAATTACAATTT+TGG | - | 54942:12329-12348 | MS.gene071608:CDS | 5.0% |
| ACAAACGGTACACTTCTCGG+AGG | + | 54942:11734-11753 | MS.gene071608:intergenic | 50.0% | |
| ACGCCACGTGTCCCTAAAAA+GGG | - | 54942:12380-12399 | MS.gene071608:CDS | 50.0% | |
| ATCTGAATCCGCCAAAGCTC+CGG | - | 54942:10701-10720 | MS.gene071608:intron | 50.0% | |
| CATTCCAGTCCTGATTTCCG+CGG | + | 54942:11441-11460 | MS.gene071608:intergenic | 50.0% | |
| CCAAACAGGTCTCTTACCAC+CGG | + | 54942:10622-10641 | MS.gene071608:intergenic | 50.0% | |
| CCCATATAAGGTGGGATTGG+TGG | + | 54942:11577-11596 | MS.gene071608:intergenic | 50.0% | |
| GAACATGGATGATCAGGGCT+GGG | - | 54942:11982-12001 | MS.gene071608:intron | 50.0% | |
| GAGCCCATATAAGGTGGGAT+TGG | + | 54942:11580-11599 | MS.gene071608:intergenic | 50.0% | |
| GAGTTATGATTGTGGGACCC+TGG | + | 54942:11268-11287 | MS.gene071608:intergenic | 50.0% | |
| GCCACCAATCCCACCTTATA+TGG | - | 54942:11573-11592 | MS.gene071608:intron | 50.0% | |
| GCCGAAATTCATCCAGGAAC+CGG | - | 54942:11344-11363 | MS.gene071608:intron | 50.0% | |
| GGTTTCACCAATTCCTGTGG+TGG | + | 54942:10753-10772 | MS.gene071608:intergenic | 50.0% | |
| GTATGCAACTCAGAATCCGG+AGG | + | 54942:11788-11807 | MS.gene071608:intergenic | 50.0% | |
| GTATGGTCCACCTTTGCATG+TGG | - | 54942:11706-11725 | MS.gene071608:intron | 50.0% | |
| TATGATTGTGGGACCCTGGT+GGG | + | 54942:11264-11283 | MS.gene071608:intergenic | 50.0% | |
| TGACGGCGATGAATGAGGTA+CGG | + | 54942:10526-10545 | MS.gene071608:intergenic | 50.0% | |
| TTATGATTGTGGGACCCTGG+TGG | + | 54942:11265-11284 | MS.gene071608:intergenic | 50.0% | |
| TTGGGCACAAATCCAGCTCT+TGG | + | 54942:11310-11329 | MS.gene071608:intergenic | 50.0% | |
| ! | AACAATCTGGCTCCAAGGTG+CGG | + | 54942:10484-10503 | MS.gene071608:intergenic | 50.0% |
| ! | ACCAATTCCTGTGGTGGTGA+TGG | + | 54942:10747-10766 | MS.gene071608:intergenic | 50.0% |
| ! | CTCCAATGCTGCTGCTTCTT+CGG | - | 54942:10650-10669 | MS.gene071608:intron | 50.0% |
| ! | GAAGAAGCAGCAGCATTGGA+GGG | + | 54942:10651-10670 | MS.gene071608:intergenic | 50.0% |
| !! | AATTCCTGTGGTGGTGATGG+CGG | + | 54942:10744-10763 | MS.gene071608:intergenic | 50.0% |
| ATCGACCTTGCCTCAATCGC+AGG | - | 54942:10785-10804 | MS.gene071608:intron | 55.0% | |
| CCACAAATGTCTGCGCCTCA+AGG | - | 54942:11226-11245 | MS.gene071608:intron | 55.0% | |
| CCGGTGGTAAGAGACCTGTT+TGG | - | 54942:10619-10638 | MS.gene071608:intron | 55.0% | |
| CCTTGAGGCGCAGACATTTG+TGG | + | 54942:11229-11248 | MS.gene071608:intergenic | 55.0% | |
| CGCCACGTGTCCCTAAAAAG+GGG | - | 54942:12381-12400 | MS.gene071608:CDS | 55.0% | |
| CTGGATGAATTTCGGCGCTG+AGG | + | 54942:11340-11359 | MS.gene071608:intergenic | 55.0% | |
| GACATCGACAACACTTCCGG+TGG | - | 54942:10603-10622 | MS.gene071608:intron | 55.0% | |
| GACCGAAGAAGCAGCAGCAT+TGG | + | 54942:10655-10674 | MS.gene071608:intergenic | 55.0% | |
| GACGCCACGTGTCCCTAAAA+AGG | - | 54942:12379-12398 | MS.gene071608:CDS | 55.0% | |
| GCATGATTAGTAGGCGGTGG+AGG | + | 54942:11532-11551 | MS.gene071608:intergenic | 55.0% | |
| GCCATCACCACCACAGGAAT+TGG | - | 54942:10743-10762 | MS.gene071608:intron | 55.0% | |
| GGAACATGGATGATCAGGGC+TGG | - | 54942:11981-12000 | MS.gene071608:intron | 55.0% | |
| GGGACAGCAACGAAACCTTG+AGG | + | 54942:11244-11263 | MS.gene071608:intergenic | 55.0% | |
| GGTGGAGGCCTTACAAACTG+TGG | + | 54942:11517-11536 | MS.gene071608:intergenic | 55.0% | |
| GTTGTAGACCACCGCCATTC+CGG | + | 54942:11366-11385 | MS.gene071608:intergenic | 55.0% | |
| GTTTCGTTGCTGTCCCACCA+GGG | - | 54942:11248-11267 | MS.gene071608:intron | 55.0% | |
| TCATCCAGGAACCGGAATGG+CGG | - | 54942:11352-11371 | MS.gene071608:intron | 55.0% | |
| TGAGGCGCAGACATTTGTGG+CGG | + | 54942:11226-11245 | MS.gene071608:intergenic | 55.0% | |
| TGATCAGGACCGCGGAAATC+AGG | - | 54942:11429-11448 | MS.gene071608:intron | 55.0% | |
| TGCAACTCAGAATCCGGAGG+TGG | + | 54942:11785-11804 | MS.gene071608:intergenic | 55.0% | |
| TGGGCATGATTAGTAGGCGG+TGG | + | 54942:11535-11554 | MS.gene071608:intergenic | 55.0% | |
| TGTTCGGATGAGGCAGGAAG+CGG | - | 54942:13389-13408 | MS.gene071608:CDS | 55.0% | |
| ! | CAGTGGCGGGGGATAGTATT+GGG | + | 54942:11554-11573 | MS.gene071608:intergenic | 55.0% |
| ! | CGAAGAAGCAGCAGCATTGG+AGG | + | 54942:10652-10671 | MS.gene071608:intergenic | 55.0% |
| ! | CTCAGCGCCGAAATTCATCC+AGG | - | 54942:11338-11357 | MS.gene071608:intron | 55.0% |
| ! | CTCTGGAAGCAGACGTGATC+AGG | - | 54942:11414-11433 | MS.gene071608:intron | 55.0% |
| ! | GAGGCAACAATCTGGCTCCA+AGG | + | 54942:10489-10508 | MS.gene071608:intergenic | 55.0% |
| ! | TAAGGTGGGATTGGTGGCAG+TGG | + | 54942:11571-11590 | MS.gene071608:intergenic | 55.0% |
| ! | TGCTGCTGCTTCTTCGGTCA+TGG | - | 54942:10656-10675 | MS.gene071608:intron | 55.0% |
| !! | CGGTCATGGATGCTGACTCA+TGG | - | 54942:10670-10689 | MS.gene071608:intron | 55.0% |
| !! | GACCCCTTTTTAGGGACACG+TGG | + | 54942:12386-12405 | MS.gene071608:intergenic | 55.0% |
| AGCAGACGTGATCAGGACCG+CGG | - | 54942:11421-11440 | MS.gene071608:intron | 60.0% | |
| AGGACCGCGGAAATCAGGAC+TGG | - | 54942:11434-11453 | MS.gene071608:intron | 60.0% | |
| ATGAGGTACGGCGGAAGCAG+CGG | + | 54942:10514-10533 | MS.gene071608:intergenic | 60.0% | |
| CACTTTCGCCGTCACTGAGG+CGG | - | 54942:10575-10594 | MS.gene071608:intron | 60.0% | |
| CAGACATTTGTGGCGGCTGG+CGG | + | 54942:11219-11238 | MS.gene071608:intergenic | 60.0% | |
| CAGCGGTGGAGGCAACAATC+TGG | + | 54942:10497-10516 | MS.gene071608:intergenic | 60.0% | |
| CGACACTTTCGCCGTCACTG+AGG | - | 54942:10572-10591 | MS.gene071608:intron | 60.0% | |
| CGGCGATGAATGAGGTACGG+CGG | + | 54942:10523-10542 | MS.gene071608:intergenic | 60.0% | |
| CTCGGAGGCTCCACATGCAA+AGG | + | 54942:11719-11738 | MS.gene071608:intergenic | 60.0% | |
| GAGGAAGGAGGAGGAGGTGA+CGG | + | 54942:10543-10562 | MS.gene071608:intergenic | 60.0% | |
| GGAGGCTCCACATGCAAAGG+TGG | + | 54942:11716-11735 | MS.gene071608:intergenic | 60.0% | |
| GGTCTACAACCACGCGGAGA+TGG | - | 54942:11376-11395 | MS.gene071608:intron | 60.0% | |
| GGTTTCGTTGCTGTCCCACC+AGG | - | 54942:11247-11266 | MS.gene071608:intron | 60.0% | |
| GTTCGGATGAGGCAGGAAGC+GGG | - | 54942:13390-13409 | MS.gene071608:CDS | 60.0% | |
| TGGCGATTTCGCCGGAGCTT+TGG | + | 54942:10715-10734 | MS.gene071608:intergenic | 60.0% | |
| TGGTGAGAACCATCTCCGCG+TGG | + | 54942:11388-11407 | MS.gene071608:intergenic | 60.0% | |
| ! | AATCTGGCTCCAAGGTGCGG+CGG | + | 54942:10481-10500 | MS.gene071608:intergenic | 60.0% |
| ! | CGATTTCGCCGGAGCTTTGG+CGG | + | 54942:10712-10731 | MS.gene071608:intergenic | 60.0% |
| ! | CGGCGCTGAGGCTGATCATT+GGG | + | 54942:11328-11347 | MS.gene071608:intergenic | 60.0% |
| ! | GCAGTGGCGGGGGATAGTAT+TGG | + | 54942:11555-11574 | MS.gene071608:intergenic | 60.0% |
| ! | GGAGGTGACGGCGATGAATG+AGG | + | 54942:10531-10550 | MS.gene071608:intergenic | 60.0% |
| ! | TCGGCGCTGAGGCTGATCAT+TGG | + | 54942:11329-11348 | MS.gene071608:intergenic | 60.0% |
| !! | GACGGCGAAAGTGTCGACAG+CGG | + | 54942:10568-10587 | MS.gene071608:intergenic | 60.0% |
| ACCACCGCCATCACCACCAC+AGG | - | 54942:10737-10756 | MS.gene071608:intron | 65.0% | |
| ACCACCGCCATTCCGGTTCC+TGG | + | 54942:11359-11378 | MS.gene071608:intergenic | 65.0% | |
| GCGCAGACATTTGTGGCGGC+TGG | + | 54942:11222-11241 | MS.gene071608:intergenic | 65.0% | |
| GGCGGTGGTCTACAACCACG+CGG | - | 54942:11370-11389 | MS.gene071608:intron | 65.0% | |
| GTCTTCCGCCGCCTCAGTGA+CGG | + | 54942:10586-10605 | MS.gene071608:intergenic | 65.0% | |
| TCCAGGAACCGGAATGGCGG+TGG | - | 54942:11355-11374 | MS.gene071608:intron | 65.0% | |
| TTTCGCCGTCACTGAGGCGG+CGG | - | 54942:10578-10597 | MS.gene071608:intron | 65.0% | |
| ! | GGTGGGATTGGTGGCAGTGG+CGG | + | 54942:11568-11587 | MS.gene071608:intergenic | 65.0% |
| ! | GTGGGATTGGTGGCAGTGGC+GGG | + | 54942:11567-11586 | MS.gene071608:intergenic | 65.0% |
| ! | TGGGATTGGTGGCAGTGGCG+GGG | + | 54942:11566-11585 | MS.gene071608:intergenic | 65.0% |
| !! | GAAAGTGTCGACAGCGGCGG+AGG | + | 54942:10562-10581 | MS.gene071608:intergenic | 65.0% |
| !! | GGCGAAAGTGTCGACAGCGG+CGG | + | 54942:10565-10584 | MS.gene071608:intergenic | 65.0% |
| !! | GGCGGGAGAGGAAGCGTTCA+TGG | + | 54942:10460-10479 | MS.gene071608:intergenic | 65.0% |
| !! | GGTGGTGGTGGCGATTTCGC+CGG | + | 54942:10723-10742 | MS.gene071608:intergenic | 65.0% |
| !! | TCCTGTGGTGGTGATGGCGG+TGG | + | 54942:10741-10760 | MS.gene071608:intergenic | 65.0% |
| !! | TGTGGTGGTGATGGCGGTGG+TGG | + | 54942:10738-10757 | MS.gene071608:intergenic | 65.0% |
| ACAGCGGCGGAGGAAGGAGG+AGG | + | 54942:10552-10571 | MS.gene071608:intergenic | 70.0% | |
| AGGTACGGCGGAAGCAGCGG+TGG | + | 54942:10511-10530 | MS.gene071608:intergenic | 70.0% | |
| TACGGCGGAAGCAGCGGTGG+AGG | + | 54942:10508-10527 | MS.gene071608:intergenic | 70.0% | |
| TCGACAGCGGCGGAGGAAGG+AGG | + | 54942:10555-10574 | MS.gene071608:intergenic | 70.0% | |
| ! | GGGATTGGTGGCAGTGGCGG+GGG | + | 54942:11565-11584 | MS.gene071608:intergenic | 70.0% |
| ! | GTGTCGACAGCGGCGGAGGA+AGG | + | 54942:10558-10577 | MS.gene071608:intergenic | 70.0% |
| !! | GGTGGTGATGGCGGTGGTGG+TGG | + | 54942:10735-10754 | MS.gene071608:intergenic | 70.0% |
| CTGGCTCCAAGGTGCGGCGG+CGG | + | 54942:10478-10497 | MS.gene071608:intergenic | 75.0% | |
| GCGGCGGAGGAAGGAGGAGG+AGG | + | 54942:10549-10568 | MS.gene071608:intergenic | 75.0% | |
| TGGCGGCTGGCGGCCTCCAT+TGG | + | 54942:11209-11228 | MS.gene071608:intergenic | 75.0% | |
| TGGCTCCAAGGTGCGGCGGC+GGG | + | 54942:10477-10496 | MS.gene071608:intergenic | 75.0% | |
| ! | CCAAGGTGCGGCGGCGGGAG+AGG | + | 54942:10472-10491 | MS.gene071608:intergenic | 80.0% |
| ! | CCTCTCCCGCCGCCGCACCT+TGG | - | 54942:10469-10488 | MS.gene071608:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 54942 | gene | 10453 | 13428 | 10453 | ID=MS.gene071608 |
| 54942 | mRNA | 10453 | 13428 | 10453 | ID=MS.gene071608.t1;Parent=MS.gene071608 |
| 54942 | exon | 13075 | 13428 | 13075 | ID=MS.gene071608.t1.exon1;Parent=MS.gene071608.t1 |
| 54942 | CDS | 13075 | 13428 | 13075 | ID=cds.MS.gene071608.t1;Parent=MS.gene071608.t1 |
| 54942 | exon | 12268 | 12796 | 12268 | ID=MS.gene071608.t1.exon2;Parent=MS.gene071608.t1 |
| 54942 | CDS | 12268 | 12796 | 12268 | ID=cds.MS.gene071608.t1;Parent=MS.gene071608.t1 |
| 54942 | exon | 12041 | 12194 | 12041 | ID=MS.gene071608.t1.exon3;Parent=MS.gene071608.t1 |
| 54942 | CDS | 12041 | 12194 | 12041 | ID=cds.MS.gene071608.t1;Parent=MS.gene071608.t1 |
| 54942 | exon | 11845 | 11935 | 11845 | ID=MS.gene071608.t1.exon4;Parent=MS.gene071608.t1 |
| 54942 | CDS | 11845 | 11935 | 11845 | ID=cds.MS.gene071608.t1;Parent=MS.gene071608.t1 |
| 54942 | exon | 10825 | 10896 | 10825 | ID=MS.gene071608.t1.exon5;Parent=MS.gene071608.t1 |
| 54942 | CDS | 10825 | 10896 | 10825 | ID=cds.MS.gene071608.t1;Parent=MS.gene071608.t1 |
| 54942 | exon | 10453 | 10476 | 10453 | ID=MS.gene071608.t1.exon6;Parent=MS.gene071608.t1 |
| 54942 | CDS | 10453 | 10476 | 10453 | ID=cds.MS.gene071608.t1;Parent=MS.gene071608.t1 |
| Gene Sequence |
| Protein sequence |
