AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23104


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23104.t1 MTR_7g111280 95.305 426 12 3 1 425 1 419 0.0 843
MS.gene23104.t1 MTR_1g085070 72.706 425 91 5 1 424 1 401 0.0 629
MS.gene23104.t1 MTR_7g110900 71.390 367 105 0 59 425 49 415 0.0 589
MS.gene23104.t1 MTR_7g110900 71.585 366 104 0 59 424 49 414 0.0 586
MS.gene23104.t1 MTR_1g085620 69.430 386 116 1 41 424 17 402 0.0 584
MS.gene23104.t1 MTR_4g124320 65.023 426 130 2 3 425 12 421 0.0 582
MS.gene23104.t1 MTR_1g085620 71.380 297 85 0 128 424 1 297 9.63e-168 473
MS.gene23104.t1 MTR_8g072010 51.733 375 177 2 52 424 19 391 3.04e-148 427
MS.gene23104.t1 MTR_8g072000 51.771 367 175 1 60 424 26 392 4.30e-146 421
MS.gene23104.t1 MTR_8g072000 51.771 367 175 1 60 424 57 423 1.77e-145 421
MS.gene23104.t1 MTR_1g101000 53.930 369 165 3 60 423 37 405 1.17e-144 418
MS.gene23104.t1 MTR_1g101000 53.930 369 165 3 60 423 37 405 2.61e-144 418
MS.gene23104.t1 MTR_4g124320 64.194 310 92 2 3 309 12 305 3.38e-144 414
MS.gene23104.t1 MTR_1g101020 53.659 369 166 3 60 423 37 405 1.95e-142 412
MS.gene23104.t1 MTR_7g060760 50.409 367 176 2 61 425 56 418 7.31e-139 404
MS.gene23104.t1 MTR_5g042650 50.137 365 176 2 61 423 28 388 5.50e-137 398
MS.gene23104.t1 MTR_1g101000 52.819 337 154 3 60 391 37 373 5.43e-126 370
MS.gene23104.t1 MTR_1g036590 60.000 80 32 0 243 322 271 350 1.95e-24 104
MS.gene23104.t1 MTR_7g006750 50.000 94 47 0 201 294 467 560 3.32e-23 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23104.t1 AT3G05910 67.866 417 128 2 8 424 4 414 0.0 619
MS.gene23104.t1 AT5G26670 68.706 425 122 3 1 424 1 415 0.0 613
MS.gene23104.t1 AT1G57590 73.352 364 97 0 61 424 79 442 0.0 590
MS.gene23104.t1 AT3G62060 61.916 428 142 4 4 424 5 418 0.0 567
MS.gene23104.t1 AT3G62060 61.916 428 142 4 4 424 5 418 0.0 566
MS.gene23104.t1 AT2G46930 60.714 420 147 3 5 424 14 415 0.0 556
MS.gene23104.t1 AT5G26670 72.391 297 82 0 128 424 1 297 3.20e-169 476
MS.gene23104.t1 AT5G26670 72.391 297 82 0 128 424 1 297 3.20e-169 476
MS.gene23104.t1 AT5G26670 72.391 297 82 0 128 424 1 297 3.20e-169 476
MS.gene23104.t1 AT1G09550 59.128 367 146 2 40 403 17 382 3.84e-163 464
MS.gene23104.t1 AT4G19420 54.377 377 170 1 51 425 14 390 4.29e-156 447
MS.gene23104.t1 AT4G19420 54.377 377 170 1 51 425 14 390 4.29e-156 447
MS.gene23104.t1 AT5G23870 54.076 368 163 4 62 423 35 402 6.51e-150 432
MS.gene23104.t1 AT5G23870 54.076 368 163 4 62 423 35 402 6.51e-150 432
MS.gene23104.t1 AT5G23870 54.076 368 163 4 62 423 35 402 8.68e-150 432
MS.gene23104.t1 AT5G23870 54.076 368 163 4 62 423 35 402 1.10e-149 432
MS.gene23104.t1 AT4G19420 50.000 412 169 2 51 425 14 425 1.20e-149 432
MS.gene23104.t1 AT3G05910 64.725 309 103 2 8 316 4 306 4.75e-149 426
MS.gene23104.t1 AT3G09410 47.307 427 207 4 2 425 16 427 7.63e-144 417
MS.gene23104.t1 AT3G09405 45.606 421 202 4 2 419 13 409 4.48e-136 396
MS.gene23104.t1 AT5G45280 49.307 361 180 2 62 419 24 384 6.70e-135 393
MS.gene23104.t1 AT4G19410 49.030 361 181 2 62 419 24 384 1.64e-134 392
MS.gene23104.t1 AT4G19410 49.128 344 173 1 62 403 24 367 2.30e-127 378
MS.gene23104.t1 AT3G09410 51.796 334 158 1 61 391 60 393 1.60e-125 369
MS.gene23104.t1 AT5G45280 52.128 282 133 1 62 341 24 305 4.02e-109 326
MS.gene23104.t1 AT3G09405 49.175 303 149 2 120 419 2 302 3.20e-108 322
MS.gene23104.t1 AT4G19420 56.522 230 98 1 51 278 14 243 2.77e-90 276

Find 105 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATCACCAACTTGGTTTA+TGG 0.071657 7.1:+4209101 MS.gene23104:CDS
AATTCAGAGGACAGCGAATT+TGG 0.187648 7.1:+4210259 MS.gene23104:CDS
GCTAATCAGGCTCTTCTTTC+CGG 0.191020 7.1:+4210324 MS.gene23104:CDS
ATACATCACCTTGCAGAAAT+TGG 0.207626 7.1:-4211376 None:intergenic
CAGACAATTCTCCGGTTATT+AGG 0.224305 7.1:+4211618 MS.gene23104:CDS
AATGGAAGATTTGATGTTAA+AGG 0.242008 7.1:+4210290 MS.gene23104:CDS
TGTGATGGTGGCTCATTTAC+TGG 0.246928 7.1:+4209872 MS.gene23104:CDS
TACCATTTGCATCGTGGATA+TGG 0.251407 7.1:+4209389 MS.gene23104:CDS
TTGGTTTATGGGTTTGAATT+AGG 0.260228 7.1:+4209113 MS.gene23104:CDS
TATGGGTTTGAATTAGGATA+TGG 0.270691 7.1:+4209119 MS.gene23104:CDS
TTATCACCAACTTGGTTTAT+GGG 0.298292 7.1:+4209102 MS.gene23104:CDS
TCAATACTGCTTATGATTCA+TGG 0.299224 7.1:+4211017 MS.gene23104:CDS
TGAAGAACTCTTTCTGTTAG+AGG 0.300195 7.1:+4209172 MS.gene23104:CDS
CAGTTGGCTTGTTAATTTAG+AGG 0.330535 7.1:+4209424 MS.gene23104:CDS
AATTATAGGATTGATATATC+TGG 0.336116 7.1:+4210567 MS.gene23104:intron
TAGCAGCTGCATTGTGGATA+AGG 0.344441 7.1:-4209256 None:intergenic
ATGGAAGATTTGATGTTAAA+GGG 0.348581 7.1:+4210291 MS.gene23104:CDS
CACTTCACTTTAGTAGTCCT+TGG 0.363666 7.1:-4210405 None:intergenic
CCTTGCAGAAATTGGATTTG+TGG 0.382065 7.1:-4211368 None:intergenic
TTCACCTTGTTCCTAATAAC+CGG 0.384001 7.1:-4211629 None:intergenic
TGATAATACATGTCACCATT+TGG 0.393033 7.1:+4211876 MS.gene23104:CDS
CAGCAGATCCCCATGGCTAT+TGG 0.396660 7.1:+4211309 MS.gene23104:CDS
CTTCTTTCCGGATGTTCAGC+GGG 0.402249 7.1:+4210336 MS.gene23104:CDS
ATTCAGAGGACAGCGAATTT+GGG 0.404061 7.1:+4210260 MS.gene23104:CDS
CAACACCACTGTACATATTC+CGG 0.405411 7.1:-4210602 None:intergenic
TTACTAAGTATTCCTGTGAA+TGG 0.407702 7.1:-4209690 None:intergenic
ATGTATCTTGCCTCTCGGTT+TGG 0.417685 7.1:-4211589 None:intergenic
AGCAGCTGCATTGTGGATAA+GGG 0.417871 7.1:-4209255 None:intergenic
GCATCCTTTCTTGAGGGTAA+TGG 0.436523 7.1:+4209209 MS.gene23104:CDS
TAGGTAATTGCTTTAGCTGT+TGG 0.437321 7.1:+4211799 MS.gene23104:intron
TTGGTTTCTTGCAGTGTGCT+TGG 0.438110 7.1:+4209349 MS.gene23104:intron
AATATGTACAGTGGTGTTGT+AGG 0.448233 7.1:+4210606 MS.gene23104:CDS
TAGGCCACCCGCTGAACATC+CGG 0.448568 7.1:-4210343 None:intergenic
GCGAATTTGGGCAGCTGCAA+TGG 0.455500 7.1:+4210272 MS.gene23104:CDS
TACTGGAGATGGTGAAGATC+AGG 0.456973 7.1:+4209889 MS.gene23104:CDS
TTTCTTGCAGTGTGCTTGGA+TGG 0.462046 7.1:+4209353 MS.gene23104:intron
TTGCTTTAGCTGTTGGAGAC+TGG 0.466598 7.1:+4211806 MS.gene23104:CDS
GTCTCTTGAATACAGGGTTC+AGG 0.466892 7.1:+4211486 MS.gene23104:intron
AATAAACCTGAAGAAAATCC+AGG 0.477981 7.1:+4209711 MS.gene23104:CDS
ATCCACAATGCAGCTGCTAA+AGG 0.480879 7.1:+4209260 MS.gene23104:CDS
GTGAAGTGTCTTAGCGATGC+AGG 0.481043 7.1:+4210420 MS.gene23104:CDS
ATTTCCATTACCCTCAAGAA+AGG 0.487996 7.1:-4209213 None:intergenic
TTCTCAAGATCAAACAAGAA+TGG 0.489491 7.1:+4211536 MS.gene23104:CDS
TTGCATCGTGGATATGGATC+AGG 0.495342 7.1:+4209395 MS.gene23104:CDS
AATTTCGAGGTCTCTTTCCA+AGG 0.497114 7.1:+4210388 MS.gene23104:CDS
ATCATCATTATACATGGAAA+AGG 0.501178 7.1:+4209662 MS.gene23104:CDS
TGGCTCAACTGAAAACCAAA+TGG 0.503838 7.1:-4211891 None:intergenic
CTCCTTTAGCAGCTGCATTG+TGG 0.510189 7.1:-4209262 None:intergenic
TGCATTCATGCCAATAGCCA+TGG 0.510756 7.1:-4211319 None:intergenic
ATCCATATCCACGATGCAAA+TGG 0.517887 7.1:-4209391 None:intergenic
CATGCAGCATCCTTTCTTGA+GGG 0.518276 7.1:+4209203 MS.gene23104:CDS
ATACACTGTGATGAATTTCG+AGG 0.519543 7.1:+4210375 MS.gene23104:CDS
ACCCAGAAAAGTTTAGCCAT+TGG 0.528435 7.1:-4209059 None:intergenic
TAGCCATGGGGATCTGCTGA+TGG 0.530490 7.1:-4211305 None:intergenic
AGGACTTGTTATCACCAACT+TGG 0.533797 7.1:+4209094 MS.gene23104:CDS
CCACGATGCAAATGGTAACC+AGG 0.545374 7.1:-4209383 None:intergenic
GCATTCATGCCAATAGCCAT+GGG 0.548266 7.1:-4211318 None:intergenic
TATCTGGCGAGCGCACCCTC+CGG 0.549827 7.1:+4210583 MS.gene23104:CDS
GTAAAGCTTCGTTATTGTGA+TGG 0.550885 7.1:+4209857 MS.gene23104:CDS
CAGTGGTGTTGTAGGGATGC+AGG 0.553790 7.1:+4210614 MS.gene23104:CDS
TGCTTGGATGGAACATTACC+TGG 0.558834 7.1:+4209365 MS.gene23104:CDS
TTCAAACCCATAAACCAAGT+TGG 0.559248 7.1:-4209108 None:intergenic
AATGCAGCTGCTAAAGGAGC+AGG 0.563358 7.1:+4209266 MS.gene23104:CDS
AAACCGAGAGGCAAGATACA+TGG 0.565165 7.1:+4211591 MS.gene23104:CDS
GCGTGGATCATCATTATACA+TGG 0.565339 7.1:+4209656 MS.gene23104:CDS
TACTGCTTATGATTCATGGC+AGG 0.565480 7.1:+4211021 MS.gene23104:CDS
TCTTCTTTCCGGATGTTCAG+CGG 0.565522 7.1:+4210335 MS.gene23104:CDS
GTGGCCTTGTGCATTTAGCA+TGG 0.567737 7.1:-4211349 None:intergenic
GTGTTTATCGCAAGAAAACA+CGG 0.570483 7.1:+4209634 MS.gene23104:CDS
ACATGCAGCATCCTTTCTTG+AGG 0.576567 7.1:+4209202 MS.gene23104:CDS
CACAGTGTATAATAGTAGCT+AGG 0.579094 7.1:-4210362 None:intergenic
GGTGGCTCATTTACTGGAGA+TGG 0.581728 7.1:+4209878 MS.gene23104:CDS
TCTAACTGTCATCAGGGAGG+TGG 0.582270 7.1:+4209588 MS.gene23104:intron
ACACTGGCAATCAAATTCTG+AGG 0.583315 7.1:-4210974 None:intergenic
ATGATTATGATTACCGAGGT+AGG 0.584023 7.1:-4210809 None:intergenic
CATGTATTATCACAAGGGTA+AGG 0.587582 7.1:-4211865 None:intergenic
ATGGATCAGGAGCAAACAGT+TGG 0.589134 7.1:+4209408 MS.gene23104:CDS
CACTGGCAATCAAATTCTGA+GGG 0.591267 7.1:-4210973 None:intergenic
CTTTCCGGATGTTCAGCGGG+TGG 0.596559 7.1:+4210339 MS.gene23104:CDS
GAAAAGGAGATACCATTCAC+AGG 0.596897 7.1:+4209678 MS.gene23104:CDS
AAACCATGTATCTTGCCTCT+CGG 0.596928 7.1:-4211594 None:intergenic
AAGCTTCGTTATTGTGATGG+TGG 0.600562 7.1:+4209860 MS.gene23104:CDS
TGGTGACATGTATTATCACA+AGG 0.608610 7.1:-4211871 None:intergenic
TGAAGTGTCTTAGCGATGCA+GGG 0.608865 7.1:+4210421 MS.gene23104:CDS
CCTGGTTACCATTTGCATCG+TGG 0.609738 7.1:+4209383 MS.gene23104:CDS
TGATTACCGAGGTAGGATCA+AGG 0.612410 7.1:-4210802 None:intergenic
ATATGTACAGTGGTGTTGTA+GGG 0.613917 7.1:+4210607 MS.gene23104:CDS
CCATGGGGATCTGCTGATGG+AGG 0.617825 7.1:-4211302 None:intergenic
ACTGTCATCAGGGAGGTGGA+TGG 0.626588 7.1:+4209592 MS.gene23104:intron
AGGGTGAGTCCTACGAGCAG+AGG 0.626989 7.1:-4209236 None:intergenic
TTCTCCGGTTATTAGGAACA+AGG 0.636482 7.1:+4211625 MS.gene23104:CDS
CACCACTGTACATATTCCGG+AGG 0.638914 7.1:-4210599 None:intergenic
AATGGAAATCCTCTGCTCGT+AGG 0.640827 7.1:+4209227 MS.gene23104:CDS
CCTCCATCAGCAGATCCCCA+TGG 0.647413 7.1:+4211302 MS.gene23104:CDS
CCACAAATCCAATTTCTGCA+AGG 0.649408 7.1:+4211368 MS.gene23104:CDS
TAATCACCTTGATCCTACCT+CGG 0.661838 7.1:+4210796 MS.gene23104:CDS
GAAGCAGAACTGCAATTCAG+AGG 0.664323 7.1:+4210246 MS.gene23104:CDS
ACCACTGTACATATTCCGGA+GGG 0.680732 7.1:-4210598 None:intergenic
TATCGCAAGAAAACACGGCG+TGG 0.683797 7.1:+4209639 MS.gene23104:CDS
AGGTGATTAGTACAAATCTG+TGG 0.684849 7.1:-4210782 None:intergenic
TCGCTCACTGCCAAACCGAG+AGG 0.692246 7.1:+4211579 MS.gene23104:CDS
TAAACCATGCTAAATGCACA+AGG 0.692567 7.1:+4211345 MS.gene23104:CDS
GGTGACATGTATTATCACAA+GGG 0.699950 7.1:-4211870 None:intergenic
ACCCTCCGGAATATGTACAG+TGG 0.725020 7.1:+4210597 MS.gene23104:CDS
CATTCATGCCAATAGCCATG+GGG 0.744235 7.1:-4211317 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATGTAAAATTTGATATTT+TGG + chr7.1:4210001-4210020 MS.gene23104:intron 10.0%
!!! ATTAATTTTTTTTGTAATGA+TGG - chr7.1:4210514-4210533 None:intergenic 10.0%
!!! TATGTAAAATTTGATATTTT+GGG + chr7.1:4210002-4210021 MS.gene23104:intron 10.0%
!!! TTAGAAATAATTAAAGTTTT+AGG + chr7.1:4209562-4209581 MS.gene23104:intron 10.0%
!! AAATAGTTTATATTCTTTCA+TGG + chr7.1:4210674-4210693 MS.gene23104:intron 15.0%
!! AATGAAATGATTAAATGTAT+CGG + chr7.1:4211172-4211191 MS.gene23104:intron 15.0%
!! ACATTTAATCATTTCATTAT+CGG - chr7.1:4211170-4211189 None:intergenic 15.0%
!! ATAAACTATTTGTAATAAGT+TGG - chr7.1:4210665-4210684 None:intergenic 15.0%
!! ATGTAAAAATTAATTACACT+AGG + chr7.1:4209921-4209940 MS.gene23104:intron 15.0%
!! CAAAAATATTTAATATTGAG+AGG - chr7.1:4209332-4209351 None:intergenic 15.0%
!! TTATTACTATATTATTCAGT+TGG + chr7.1:4211448-4211467 MS.gene23104:intron 15.0%
!!! CTCTCAATATTAAATATTTT+TGG + chr7.1:4209330-4209349 MS.gene23104:intron 15.0%
!!! TTGCTTTTTTAATTTGTTAT+AGG + chr7.1:4209772-4209791 MS.gene23104:intron 15.0%
!! AAATAATAGTATATGAGATG+TGG + chr7.1:4211097-4211116 MS.gene23104:intron 20.0%
!! AATTATAGGATTGATATATC+TGG + chr7.1:4210567-4210586 MS.gene23104:intron 20.0%
!! AATTGAATGAAAATTAAACC+TGG - chr7.1:4209732-4209751 None:intergenic 20.0%
!! ATATTTAATATTGAGAGGAA+AGG - chr7.1:4209327-4209346 None:intergenic 20.0%
!! TTTGTTTGCATTGAAATTAT+AGG + chr7.1:4210553-4210572 MS.gene23104:intron 20.0%
!!! AATTTGCAGATTTTTTCAAT+TGG + chr7.1:4209828-4209847 MS.gene23104:intron 20.0%
!!! AGTTAACTTTTATGCAAAAA+AGG - chr7.1:4210066-4210085 None:intergenic 20.0%
!!! TCTTTTCTTTTCTTTTCTTT+TGG + chr7.1:4209476-4209495 MS.gene23104:intron 20.0%
! AATATCCTAAGTTTGTCAAT+TGG + chr7.1:4211046-4211065 MS.gene23104:intron 25.0%
! AATGGAAGATTTGATGTTAA+AGG + chr7.1:4210290-4210309 MS.gene23104:CDS 25.0%
! ATCATCATTATACATGGAAA+AGG + chr7.1:4209662-4209681 MS.gene23104:CDS 25.0%
! ATGGAAGATTTGATGTTAAA+GGG + chr7.1:4210291-4210310 MS.gene23104:CDS 25.0%
! ATTATTTGTTTGATCACTGT+AGG + chr7.1:4210742-4210761 MS.gene23104:intron 25.0%
! TGAAAAAGGAGTAATAAAAC+AGG - chr7.1:4210944-4210963 None:intergenic 25.0%
!! ATTTTCAGTTAATTATGCCA+TGG - chr7.1:4209540-4209559 None:intergenic 25.0%
!! TACATACATTGACTAAATGT+AGG + chr7.1:4211780-4211799 MS.gene23104:intron 25.0%
!! TTTTATGCAAAAAAGGATAC+AGG - chr7.1:4210059-4210078 None:intergenic 25.0%
!! TTTTGTAATGATGGTAGAAA+TGG - chr7.1:4210505-4210524 None:intergenic 25.0%
!!! TAGAGGTATTTCTTCTTATT+TGG + chr7.1:4209441-4209460 MS.gene23104:intron 25.0%
!!! TTCAGTTTTGTCAAATAGTT+AGG + chr7.1:4210843-4210862 MS.gene23104:intron 25.0%
AACATTGGACACTATACTAA+CGG + chr7.1:4211130-4211149 MS.gene23104:intron 30.0%
AATAAACCTGAAGAAAATCC+AGG + chr7.1:4209711-4209730 MS.gene23104:CDS 30.0%
ACATGGTTGTAACATTTGTA+AGG + chr7.1:4210709-4210728 MS.gene23104:intron 30.0%
AGGTTGTATTGTTTGTTTGT+AGG - chr7.1:4209297-4209316 None:intergenic 30.0%
ATCAATGATTATGATTACCG+AGG - chr7.1:4210816-4210835 None:intergenic 30.0%
TATGGGTTTGAATTAGGATA+TGG + chr7.1:4209119-4209138 MS.gene23104:CDS 30.0%
TCAATACTGCTTATGATTCA+TGG + chr7.1:4211017-4211036 MS.gene23104:CDS 30.0%
TGATAATACATGTCACCATT+TGG + chr7.1:4211876-4211895 MS.gene23104:CDS 30.0%
TTACTAAGTATTCCTGTGAA+TGG - chr7.1:4209693-4209712 None:intergenic 30.0%
TTATCACCAACTTGGTTTAT+GGG + chr7.1:4209102-4209121 MS.gene23104:CDS 30.0%
TTCTCAAGATCAAACAAGAA+TGG + chr7.1:4211536-4211555 MS.gene23104:CDS 30.0%
TTGGTTTATGGGTTTGAATT+AGG + chr7.1:4209113-4209132 MS.gene23104:CDS 30.0%
TTTAATATTGAGAGGAAAGG+TGG - chr7.1:4209324-4209343 None:intergenic 30.0%
! ATTAAACCTGGATTTTCTTC+AGG - chr7.1:4209720-4209739 None:intergenic 30.0%
! CATGGCTATGTTATTTAACA+TGG + chr7.1:4210692-4210711 MS.gene23104:intron 30.0%
! CTTTATTTACGTATGTTGTC+TGG + chr7.1:4210215-4210234 MS.gene23104:intron 30.0%
AAAAAGTGGTGTTCTAACAC+TGG - chr7.1:4210993-4211012 None:intergenic 35.0%
AATGATGGTAGAAATGGCAT+TGG - chr7.1:4210499-4210518 None:intergenic 35.0%
AGGATTTCTAACTGTCATCA+GGG + chr7.1:4209582-4209601 MS.gene23104:intron 35.0%
AGGTGATTAGTACAAATCTG+TGG - chr7.1:4210785-4210804 None:intergenic 35.0%
ATACACTGTGATGAATTTCG+AGG + chr7.1:4210375-4210394 MS.gene23104:CDS 35.0%
ATACATCACCTTGCAGAAAT+TGG - chr7.1:4211379-4211398 None:intergenic 35.0%
ATGAGCAACAATAACATGAG+AGG - chr7.1:4209804-4209823 None:intergenic 35.0%
ATGATTATGATTACCGAGGT+AGG - chr7.1:4210812-4210831 None:intergenic 35.0%
ATTTCCATTACCCTCAAGAA+AGG - chr7.1:4209216-4209235 None:intergenic 35.0%
CAAAAAAGGATACAGGTCTA+CGG - chr7.1:4210052-4210071 None:intergenic 35.0%
CAAGTCATGTATCTCAACAA+TGG - chr7.1:4210151-4210170 None:intergenic 35.0%
CACAGTGTATAATAGTAGCT+AGG - chr7.1:4210365-4210384 None:intergenic 35.0%
CATGTATTATCACAAGGGTA+AGG - chr7.1:4211868-4211887 None:intergenic 35.0%
CTTGACTGAATCTGATAACA+AGG - chr7.1:4211275-4211294 None:intergenic 35.0%
GACTACCAATTGACAAACTT+AGG - chr7.1:4211054-4211073 None:intergenic 35.0%
GGTGACATGTATTATCACAA+GGG - chr7.1:4211873-4211892 None:intergenic 35.0%
GTAAAGCTTCGTTATTGTGA+TGG + chr7.1:4209857-4209876 MS.gene23104:CDS 35.0%
GTGTTTATCGCAAGAAAACA+CGG + chr7.1:4209634-4209653 MS.gene23104:CDS 35.0%
GTTATCACCAACTTGGTTTA+TGG + chr7.1:4209101-4209120 MS.gene23104:CDS 35.0%
TAAACCATGCTAAATGCACA+AGG + chr7.1:4211345-4211364 MS.gene23104:CDS 35.0%
TAGGATTTCTAACTGTCATC+AGG + chr7.1:4209581-4209600 MS.gene23104:intron 35.0%
TAGGTAATTGCTTTAGCTGT+TGG + chr7.1:4211799-4211818 MS.gene23104:intron 35.0%
TGAAGAACTCTTTCTGTTAG+AGG + chr7.1:4209172-4209191 MS.gene23104:CDS 35.0%
TGGTATTCTTGTGATTAGTG+TGG - chr7.1:4210645-4210664 None:intergenic 35.0%
TGGTGACATGTATTATCACA+AGG - chr7.1:4211874-4211893 None:intergenic 35.0%
TGTAACATGCATATATGCCA+TGG + chr7.1:4209520-4209539 MS.gene23104:intron 35.0%
TTAGTACCATTCATTGCAAG+TGG + chr7.1:4211404-4211423 MS.gene23104:intron 35.0%
TTCAAACCCATAAACCAAGT+TGG - chr7.1:4209111-4209130 None:intergenic 35.0%
TTCACCTTGTTCCTAATAAC+CGG - chr7.1:4211632-4211651 None:intergenic 35.0%
! ATGGTTTTCAGACAATTCTC+CGG + chr7.1:4211610-4211629 MS.gene23104:CDS 35.0%
! GCAGTATTGAGAAGAAAAAG+TGG - chr7.1:4211007-4211026 None:intergenic 35.0%
! TTCTGGGTTTTCATTGCAAT+AGG + chr7.1:4209074-4209093 MS.gene23104:CDS 35.0%
! TTTTCTCCACTTGCAATGAA+TGG - chr7.1:4211413-4211432 None:intergenic 35.0%
!! AATATGTACAGTGGTGTTGT+AGG + chr7.1:4210606-4210625 MS.gene23104:CDS 35.0%
!! ATATGTACAGTGGTGTTGTA+GGG + chr7.1:4210607-4210626 MS.gene23104:CDS 35.0%
!! CAGTTGGCTTGTTAATTTAG+AGG + chr7.1:4209424-4209443 MS.gene23104:CDS 35.0%
!!! TTTTGATCGAGAAGGTGTTA+AGG + chr7.1:4211831-4211850 MS.gene23104:CDS 35.0%
AAACCATGTATCTTGCCTCT+CGG - chr7.1:4211597-4211616 None:intergenic 40.0%
AAGCTTCGTTATTGTGATGG+TGG + chr7.1:4209860-4209879 MS.gene23104:CDS 40.0%
AATTCAGAGGACAGCGAATT+TGG + chr7.1:4210259-4210278 MS.gene23104:CDS 40.0%
AATTTCGAGGTCTCTTTCCA+AGG + chr7.1:4210388-4210407 MS.gene23104:CDS 40.0%
ACACTGGCAATCAAATTCTG+AGG - chr7.1:4210977-4210996 None:intergenic 40.0%
AGCAGAAACTTGTAAGAGCA+AGG + chr7.1:4210104-4210123 MS.gene23104:intron 40.0%
ATCCATATCCACGATGCAAA+TGG - chr7.1:4209394-4209413 None:intergenic 40.0%
ATTCAGAGGACAGCGAATTT+GGG + chr7.1:4210260-4210279 MS.gene23104:CDS 40.0%
ATTTCTAACTGTCATCAGGG+AGG + chr7.1:4209585-4209604 MS.gene23104:intron 40.0%
CAACACCACTGTACATATTC+CGG - chr7.1:4210605-4210624 None:intergenic 40.0%
CACTGGCAATCAAATTCTGA+GGG - chr7.1:4210976-4210995 None:intergenic 40.0%
CACTTCACTTTAGTAGTCCT+TGG - chr7.1:4210408-4210427 None:intergenic 40.0%
CAGACAATTCTCCGGTTATT+AGG + chr7.1:4211618-4211637 MS.gene23104:CDS 40.0%
CCACAAATCCAATTTCTGCA+AGG + chr7.1:4211368-4211387 MS.gene23104:CDS 40.0%
CCTTGCAGAAATTGGATTTG+TGG - chr7.1:4211371-4211390 None:intergenic 40.0%
GAAAAGGAGATACCATTCAC+AGG + chr7.1:4209678-4209697 MS.gene23104:CDS 40.0%
GACTGAATCTGATAACAAGG+AGG - chr7.1:4211272-4211291 None:intergenic 40.0%
GAGGGAAGAAACACTGAAAA+AGG - chr7.1:4210958-4210977 None:intergenic 40.0%
GCGTGGATCATCATTATACA+TGG + chr7.1:4209656-4209675 MS.gene23104:CDS 40.0%
TAATCACCTTGATCCTACCT+CGG + chr7.1:4210796-4210815 MS.gene23104:CDS 40.0%
TACCATTTGCATCGTGGATA+TGG + chr7.1:4209389-4209408 MS.gene23104:CDS 40.0%
TACTGCTTATGATTCATGGC+AGG + chr7.1:4211021-4211040 MS.gene23104:CDS 40.0%
TAGGTAACTGACTGACAAAC+TGG + chr7.1:4209940-4209959 MS.gene23104:intron 40.0%
TGAACCCTGTATTCAAGAGA+CGG - chr7.1:4211487-4211506 None:intergenic 40.0%
TGTGGCAGTAACACAAACAT+TGG + chr7.1:4211115-4211134 MS.gene23104:intron 40.0%
TTCTCCGGTTATTAGGAACA+AGG + chr7.1:4211625-4211644 MS.gene23104:CDS 40.0%
! GGGAATGCATTTTGCTAATC+AGG + chr7.1:4210311-4210330 MS.gene23104:CDS 40.0%
!! AGGACTTGTTATCACCAACT+TGG + chr7.1:4209094-4209113 MS.gene23104:CDS 40.0%
!!! GACTGGTATTTTGATCGAGA+AGG + chr7.1:4211823-4211842 MS.gene23104:CDS 40.0%
AAACCGAGAGGCAAGATACA+TGG + chr7.1:4211591-4211610 MS.gene23104:CDS 45.0%
AATGGAAATCCTCTGCTCGT+AGG + chr7.1:4209227-4209246 MS.gene23104:CDS 45.0%
ACATGCAGCATCCTTTCTTG+AGG + chr7.1:4209202-4209221 MS.gene23104:CDS 45.0%
ACCACTGTACATATTCCGGA+GGG - chr7.1:4210601-4210620 None:intergenic 45.0%
AGCAGCTGCATTGTGGATAA+GGG - chr7.1:4209258-4209277 None:intergenic 45.0%
AGTGTCGTGTCAATGCTACA+TGG + chr7.1:4211203-4211222 MS.gene23104:intron 45.0%
ATCCACAATGCAGCTGCTAA+AGG + chr7.1:4209260-4209279 MS.gene23104:CDS 45.0%
ATGGATCAGGAGCAAACAGT+TGG + chr7.1:4209408-4209427 MS.gene23104:CDS 45.0%
ATGTATCTTGCCTCTCGGTT+TGG - chr7.1:4211592-4211611 None:intergenic 45.0%
CATGCAGCATCCTTTCTTGA+GGG + chr7.1:4209203-4209222 MS.gene23104:CDS 45.0%
CATTCATGCCAATAGCCATG+GGG - chr7.1:4211320-4211339 None:intergenic 45.0%
GAAGCAGAACTGCAATTCAG+AGG + chr7.1:4210246-4210265 MS.gene23104:CDS 45.0%
GCATCCTTTCTTGAGGGTAA+TGG + chr7.1:4209209-4209228 MS.gene23104:CDS 45.0%
GCATTCATGCCAATAGCCAT+GGG - chr7.1:4211321-4211340 None:intergenic 45.0%
GCTAATCAGGCTCTTCTTTC+CGG + chr7.1:4210324-4210343 MS.gene23104:CDS 45.0%
GTCTCTTGAATACAGGGTTC+AGG + chr7.1:4211486-4211505 MS.gene23104:intron 45.0%
TACTGGAGATGGTGAAGATC+AGG + chr7.1:4209889-4209908 MS.gene23104:CDS 45.0%
TAGCAGCTGCATTGTGGATA+AGG - chr7.1:4209259-4209278 None:intergenic 45.0%
TCTTCTTTCCGGATGTTCAG+CGG + chr7.1:4210335-4210354 MS.gene23104:CDS 45.0%
TGATTACCGAGGTAGGATCA+AGG - chr7.1:4210805-4210824 None:intergenic 45.0%
TGCATTCATGCCAATAGCCA+TGG - chr7.1:4211322-4211341 None:intergenic 45.0%
TGCTTGGATGGAACATTACC+TGG + chr7.1:4209365-4209384 MS.gene23104:CDS 45.0%
TTCGCCGTCTCTTGAATACA+GGG + chr7.1:4211480-4211499 MS.gene23104:intron 45.0%
TTGAGAGGAAAGGTGGAGAA+AGG - chr7.1:4209317-4209336 None:intergenic 45.0%
TTGCATCGTGGATATGGATC+AGG + chr7.1:4209395-4209414 MS.gene23104:CDS 45.0%
TTGCTTTAGCTGTTGGAGAC+TGG + chr7.1:4211806-4211825 MS.gene23104:CDS 45.0%
TTGGTTTCTTGCAGTGTGCT+TGG + chr7.1:4209349-4209368 MS.gene23104:intron 45.0%
TTTCGCCGTCTCTTGAATAC+AGG + chr7.1:4211479-4211498 MS.gene23104:intron 45.0%
TTTCTTGCAGTGTGCTTGGA+TGG + chr7.1:4209353-4209372 MS.gene23104:intron 45.0%
! TGAAGTGTCTTAGCGATGCA+GGG + chr7.1:4210421-4210440 MS.gene23104:CDS 45.0%
!! TGTGATGGTGGCTCATTTAC+TGG + chr7.1:4209872-4209891 MS.gene23104:CDS 45.0%
AATGCAGCTGCTAAAGGAGC+AGG + chr7.1:4209266-4209285 MS.gene23104:CDS 50.0%
ACCCTCCGGAATATGTACAG+TGG + chr7.1:4210597-4210616 MS.gene23104:CDS 50.0%
CACCACTGTACATATTCCGG+AGG - chr7.1:4210602-4210621 None:intergenic 50.0%
CCACGATGCAAATGGTAACC+AGG - chr7.1:4209386-4209405 None:intergenic 50.0%
CCTGGTTACCATTTGCATCG+TGG + chr7.1:4209383-4209402 MS.gene23104:CDS 50.0%
CGTATGTTGTCTGGTGAGAC+AGG + chr7.1:4210224-4210243 MS.gene23104:intron 50.0%
CTCCTTTAGCAGCTGCATTG+TGG - chr7.1:4209265-4209284 None:intergenic 50.0%
CTTCTTTCCGGATGTTCAGC+GGG + chr7.1:4210336-4210355 MS.gene23104:CDS 50.0%
GGTGGCTCATTTACTGGAGA+TGG + chr7.1:4209878-4209897 MS.gene23104:CDS 50.0%
TATCGCAAGAAAACACGGCG+TGG + chr7.1:4209639-4209658 MS.gene23104:CDS 50.0%
TCTAACTGTCATCAGGGAGG+TGG + chr7.1:4209588-4209607 MS.gene23104:intron 50.0%
! GTGAAGTGTCTTAGCGATGC+AGG + chr7.1:4210420-4210439 MS.gene23104:CDS 50.0%
!! GTGGCCTTGTGCATTTAGCA+TGG - chr7.1:4211352-4211371 None:intergenic 50.0%
ACTGTCATCAGGGAGGTGGA+TGG + chr7.1:4209592-4209611 MS.gene23104:intron 55.0%
CAGCAGATCCCCATGGCTAT+TGG + chr7.1:4211309-4211328 MS.gene23104:CDS 55.0%
GCGAATTTGGGCAGCTGCAA+TGG + chr7.1:4210272-4210291 MS.gene23104:CDS 55.0%
TAGCCATGGGGATCTGCTGA+TGG - chr7.1:4211308-4211327 None:intergenic 55.0%
!! CAGTGGTGTTGTAGGGATGC+AGG + chr7.1:4210614-4210633 MS.gene23104:CDS 55.0%
AGGGTGAGTCCTACGAGCAG+AGG - chr7.1:4209239-4209258 None:intergenic 60.0%
CCATGGGGATCTGCTGATGG+AGG - chr7.1:4211305-4211324 None:intergenic 60.0%
CCTCCATCAGCAGATCCCCA+TGG + chr7.1:4211302-4211321 MS.gene23104:CDS 60.0%
CTTTCCGGATGTTCAGCGGG+TGG + chr7.1:4210339-4210358 MS.gene23104:CDS 60.0%
TAGGCCACCCGCTGAACATC+CGG - chr7.1:4210346-4210365 None:intergenic 60.0%
TCGCTCACTGCCAAACCGAG+AGG + chr7.1:4211579-4211598 MS.gene23104:CDS 60.0%
TATCTGGCGAGCGCACCCTC+CGG + chr7.1:4210583-4210602 MS.gene23104:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 4209062 4211909 4209062 ID=MS.gene23104
chr7.1 mRNA 4209062 4211909 4209062 ID=MS.gene23104.t1;Parent=MS.gene23104
chr7.1 exon 4209062 4209287 4209062 ID=MS.gene23104.t1.exon1;Parent=MS.gene23104.t1
chr7.1 CDS 4209062 4209287 4209062 ID=cds.MS.gene23104.t1;Parent=MS.gene23104.t1
chr7.1 exon 4209363 4209445 4209363 ID=MS.gene23104.t1.exon2;Parent=MS.gene23104.t1
chr7.1 CDS 4209363 4209445 4209363 ID=cds.MS.gene23104.t1;Parent=MS.gene23104.t1
chr7.1 exon 4209603 4209732 4209603 ID=MS.gene23104.t1.exon3;Parent=MS.gene23104.t1
chr7.1 CDS 4209603 4209732 4209603 ID=cds.MS.gene23104.t1;Parent=MS.gene23104.t1
chr7.1 exon 4209837 4209910 4209837 ID=MS.gene23104.t1.exon4;Parent=MS.gene23104.t1
chr7.1 CDS 4209837 4209910 4209837 ID=cds.MS.gene23104.t1;Parent=MS.gene23104.t1
chr7.1 exon 4210246 4210457 4210246 ID=MS.gene23104.t1.exon5;Parent=MS.gene23104.t1
chr7.1 CDS 4210246 4210457 4210246 ID=cds.MS.gene23104.t1;Parent=MS.gene23104.t1
chr7.1 exon 4210575 4210635 4210575 ID=MS.gene23104.t1.exon6;Parent=MS.gene23104.t1
chr7.1 CDS 4210575 4210635 4210575 ID=cds.MS.gene23104.t1;Parent=MS.gene23104.t1
chr7.1 exon 4210764 4210817 4210764 ID=MS.gene23104.t1.exon7;Parent=MS.gene23104.t1
chr7.1 CDS 4210764 4210817 4210764 ID=cds.MS.gene23104.t1;Parent=MS.gene23104.t1
chr7.1 exon 4210965 4211042 4210965 ID=MS.gene23104.t1.exon8;Parent=MS.gene23104.t1
chr7.1 CDS 4210965 4211042 4210965 ID=cds.MS.gene23104.t1;Parent=MS.gene23104.t1
chr7.1 exon 4211284 4211389 4211284 ID=MS.gene23104.t1.exon9;Parent=MS.gene23104.t1
chr7.1 CDS 4211284 4211389 4211284 ID=cds.MS.gene23104.t1;Parent=MS.gene23104.t1
chr7.1 exon 4211501 4211646 4211501 ID=MS.gene23104.t1.exon10;Parent=MS.gene23104.t1
chr7.1 CDS 4211501 4211646 4211501 ID=cds.MS.gene23104.t1;Parent=MS.gene23104.t1
chr7.1 exon 4211802 4211909 4211802 ID=MS.gene23104.t1.exon11;Parent=MS.gene23104.t1
chr7.1 CDS 4211802 4211909 4211802 ID=cds.MS.gene23104.t1;Parent=MS.gene23104.t1
Gene Sequence

>MS.gene23104

ATGGCTAAACTTTTCTGGGTTTTCATTGCAATAGGACTTGTTATCACCAACTTGGTTTATGGGTTTGAATTAGGATATGGTCAACAACATGATCACTTCTTCAATGAAACTGAAGAACTCTTTCTGTTAGAGGCTCATGAACATGCAGCATCCTTTCTTGAGGGTAATGGAAATCCTCTGCTCGTAGGACTCACCCTTATCCACAATGCAGCTGCTAAAGGAGCAGGTACTACCTACAAACAAACAATACAACCTTTCTCCACCTTTCCTCTCAATATTAAATATTTTTGGTTTCTTGCAGTGTGCTTGGATGGAACATTACCTGGTTACCATTTGCATCGTGGATATGGATCAGGAGCAAACAGTTGGCTTGTTAATTTAGAGGTATTTCTTCTTATTTGGTTGATGAACTTTTCTTTTCTTTTCTTTTCTTTTGGTATTTCTTCAAAAGCATTTCTTGTAACATGCATATATGCCATGGCATAATTAACTGAAAATATTTAGAAATAATTAAAGTTTTAGGATTTCTAACTGTCATCAGGGAGGTGGATGGTGCAACAATGTCAGAACATGTGTTTATCGCAAGAAAACACGGCGTGGATCATCATTATACATGGAAAAGGAGATACCATTCACAGGAATACTTAGTAATAAACCTGAAGAAAATCCAGGTTTAATTTTCATTCAATTTATCTATTTATATTTCATTTTTGCTTTTTTAATTTGTTATAGGCAATAGCCTCTCATGTTATTGTTGCTCATATTTAATTTGCAGATTTTTTCAATTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGGCTCATTTACTGGAGATGGTGAAGATCAGGTACTATTAGATGTAAAAATTAATTACACTAGGTAACTGACTGACAAACTGGCGTAATTAATTAAATAGTGTAACTAACTTTTACATTTAATATGTAAAATTTGATATTTTGGGTTCTTCAAATGATACTTGTTTATACCGTAGACCTGTATCCTTTTTTGCATAAAAGTTAACTTTTGAGACTCAATTTTATAGCAGAAACTTGTAAGAGCAAGGTATAAAAGAGAAAAAATAACACCATTGTTGAGATACATGACTTGAACTTACTTGACATTCATTCATGTGATGAAATGAGTATTTACTACTTTATTTACGTATGTTGTCTGGTGAGACAGGAAGCAGAACTGCAATTCAGAGGACAGCGAATTTGGGCAGCTGCAATGGAAGATTTGATGTTAAAGGGAATGCATTTTGCTAATCAGGCTCTTCTTTCCGGATGTTCAGCGGGTGGCCTAGCTACTATTATACACTGTGATGAATTTCGAGGTCTCTTTCCAAGGACTACTAAAGTGAAGTGTCTTAGCGATGCAGGGTTGTTTCTTGATTCGTAAGCAACAAACAAACAAACTGCATTATTTCATGCTTCCAATGCCATTTCTACCATCATTACAAAAAAAATTAATCTTTAGTTAGTTGTTAATTTTTGTTTGCATTGAAATTATAGGATTGATATATCTGGCGAGCGCACCCTCCGGAATATGTACAGTGGTGTTGTAGGGATGCAGGTAACGCCACACTAATCACAAGAATACCAACTTATTACAAATAGTTTATATTCTTTCATGGCTATGTTATTTAACATGGTTGTAACATTTGTAAGGCATGCTGAGAATTATTTGTTTGATCACTGTAGGAAGCACAGAAGAATCTACCACAGATTTGTACTAATCACCTTGATCCTACCTCGGTAATCATAATCATTGATAATTGATTTCAGTTTTGTCAAATAGTTAGGAGTGTTAGTTTCATTTGAAAGAACAAAAAATTGATTTCTCTGCTAATACTTGCTTATAACTTGAACTTTCAGTGACCTGTTTTATTACTCCTTTTTCAGTGTTTCTTCCCTCAGAATTTGATTGCCAGTGTTAGAACACCACTTTTTCTTCTCAATACTGCTTATGATTCATGGCAGGTAAATATCCTAAGTTTGTCAATTGGTAGTCTTTAGTTTTTACTTGTGATAAATAAATAATAGTATATGAGATGTGGCAGTAACACAAACATTGGACACTATACTAACGGCTAACACATAGACACCGATAATGAAATGATTAAATGTATCGGTACGTGTCAGTGTCGTGTCAATGCTACATGGTAGTGATCATTACATTATTGTTTGTTCTAAACGATTGCATTTTCCTCCTTGTTATCAGATTCAGTCAAGTTTAGCTCCTCCATCAGCAGATCCCCATGGCTATTGGCATGAATGCAGATTAAACCATGCTAAATGCACAAGGCCACAAATCCAATTTCTGCAAGGTGATGTATAAGAATTAGTACCATTCATTGCAAGTGGAGAAAAATATTCAATAACTTATTATTACTATATTATTCAGTTGGTTAACACATTTCGCCGTCTCTTGAATACAGGGTTCAGGACTCATATGTTGAATTCTATTAAAGACTTCTCAAGATCAAACAAGAATGGATTGTTTATCAATTCGTGTTTCGCTCACTGCCAAACCGAGAGGCAAGATACATGGTTTTCAGACAATTCTCCGGTTATTAGGAACAAGGTGAACATTGCAGTTTCACTTATGTTGTTTTAAGTAATAGTTAAATAAAACAAAATGTACACAATAATTGAACTAGAATTTCTTACAATACTCTATAATATAAAGATATTTTTGTATCTAATCTAATAATATGTACATACATTGACTAAATGTAGGTAATTGCTTTAGCTGTTGGAGACTGGTATTTTGATCGAGAAGGTGTTAAGGTCATTGATTGTCCTTACCCTTGTGATAATACATGTCACCATTTGGTTTTCAGTTGA

Protein sequence

>MS.gene23104.t1

MAKLFWVFIAIGLVITNLVYGFELGYGQQHDHFFNETEELFLLEAHEHAASFLEGNGNPLLVGLTLIHNAAAKGAVCLDGTLPGYHLHRGYGSGANSWLVNLEGGGWCNNVRTCVYRKKTRRGSSLYMEKEIPFTGILSNKPEENPDFFNWNRVKLRYCDGGSFTGDGEDQEAELQFRGQRIWAAAMEDLMLKGMHFANQALLSGCSAGGLATIIHCDEFRGLFPRTTKVKCLSDAGLFLDSIDISGERTLRNMYSGVVGMQEAQKNLPQICTNHLDPTSCFFPQNLIASVRTPLFLLNTAYDSWQIQSSLAPPSADPHGYWHECRLNHAKCTRPQIQFLQGFRTHMLNSIKDFSRSNKNGLFINSCFAHCQTERQDTWFSDNSPVIRNKVIALAVGDWYFDREGVKVIDCPYPCDNTCHHLVFS